Psyllid ID: psy11350

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
Protein Sequence
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK
Secondary Structure (PSIPRED)
cccccEEEEEEcccEEEEEccHHHHHHHHHccccccccccEEEccccccEEEEEcHHHHHHHHHHEEEEEEcccccEEEEEccccEEEEEEccccccEEEEcccccccEEEEEEEccccEEEEccccccEEEccccccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccccccEEEEEcccccEEEEEccccccEEEccccccccEEEEEEcccccEEEEcccccEEEEccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEcccccccccEEEccccccEEEEEEcccccEEEEEccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccEEEEEEcccEEEEEEcccccEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHcccccEEccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEccccccEEEEcHHHHcccccccEEEEEEEcccccEEEEEEccccEEEEEHHHcEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEccc
Coil and Loop (DISEMBL)
MSDDEDVIYVKkqntvhygslEEQERKRLAankdvdddqekytnvhtsnvymEIDDEMAKDKQALLQEFERRKKARhvnvstddnQVKLNLRQlgepiclfgeEYSLAKAKERLAKAKehlhipeatRTARNQELQKHLTSLSIYCsqvgdtrpisycsfspdsqhvATASWSGlcklwtvpecelvqtfrghdcnvgaiefhplpsegavcslascaqdgsvklwsldkdtplanleghepfrvsrikfhpsgrflgtccwdhswrldtplanleghepfrvsrikfhpsgrflgtccwdhswrlwdlnqgqevlhqeghgkpvycmsfqgdgsvvatggldafgrvwdlrtGRCIMFLEGHLksvfsvdfspdgyhlatgsednavKIWDLRKRRLLKWCTqllpnsigvTSLLTDLYIDVLESLNPGIGNIISSALkeqvepiplllDIQKLTFKFDSDLHAMVLNQK
Flexible Loop (DISEMBL)
msddedviyvkkqntvhygsleeqeRKRLaankdvdddqekytnvhtsnvymeidDEMAKDKQALLQEFErrkkarhvnvstddnqvklnLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHlatgsednavkIWDLRKRRLLKWCTqllpnsigvTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK
Low Complexity Region (SEG)
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSlakakerlakakeHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK
Disordered region (IsUnstruct)
*******IYV****************************************************************************VKLNLRQLGEPICLFGEEYSLAKA**************************KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMV****
Disordered Region (DISOPRED)
*SDDEDVIYVKKQNTVHYGSLEEQE*******************VHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ*
Disordered Region (DISEMBL)
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK
Disordered Region (DISPRO)
****EDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDDEDVIYVKKQNTVHYGSxxxxxxxxxxxxxxxxxxxxxYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	471	2.2.26 [Sep-21-2011]
O43172	522	U4/U6 small nuclear ribon	yes	N/A	0.615	0.555	0.501	3e-76
Q3MHE2	521	U4/U6 small nuclear ribon	yes	N/A	0.615	0.556	0.501	4e-76
Q9DAW6	521	U4/U6 small nuclear ribon	yes	N/A	0.615	0.556	0.501	4e-76
Q5NVD0	521	U4/U6 small nuclear ribon	yes	N/A	0.615	0.556	0.498	1e-75
O22212	554	U4/U6 small nuclear ribon	yes	N/A	0.524	0.445	0.385	2e-52
Q9UTC7	462	Uncharacterized WD repeat	yes	N/A	0.541	0.551	0.375	4e-52
P20053	465	U4/U6 small nuclear ribon	yes	N/A	0.532	0.539	0.378	2e-46
Q8YRI1	1526	Uncharacterized WD repeat	no	N/A	0.526	0.162	0.319	1e-32
Q00808	1356	Vegetative incompatibilit	no	N/A	0.577	0.200	0.325	2e-31
Q8YTC2	1258	Uncharacterized WD repeat	no	N/A	0.583	0.218	0.323	4e-31

>sp|O43172|PRP4_HUMAN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2

 Score =  286 bits (731), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/301 (50%), Positives = 193/301 (64%), Gaps = 11/301 (3%)

Query: 100 LFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCS 159
           L+   YSL +A +RL +A+ H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC 
Sbjct: 179 LWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCH 238

Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLAS 216
           FSP+S+ +ATA WSGLCKLW+VP+C L+ T RGH+ NVGAI FHP  +   +    +LAS
Sbjct: 239 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLAS 298

Query: 217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTP 271
           CA DGSVKLWSLD D P+A++EGH   RV+R+ +HPSGRFLGT C+D SWRL        
Sbjct: 299 CAADGSVKLWSLDSDEPVADIEGHT-VRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEE 357

Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ 331
           + + EGH    V  I FH  G   GT   D   R+WDL  G+ ++  EGH K +Y ++F 
Sbjct: 358 ILHQEGHS-MGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFS 416

Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKI 390
            +G  +ATG  D   +VWDLR  RC+  +  H   V  V F P  G  L TG+ DN  KI
Sbjct: 417 PNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKI 476

Query: 391 W 391
           W
Sbjct: 477 W 477

Involved in pre-mRNA splicing.
Homo sapiens (taxid: 9606)

>sp|Q3MHE2|PRP4_BOVIN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1

 Score =  285 bits (730), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/301 (50%), Positives = 193/301 (64%), Gaps = 11/301 (3%)

Query: 100 LFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCS 159
           L+   YSL +A +RL +A+ H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC 
Sbjct: 178 LWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCH 237

Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLAS 216
           FSP+S+ +ATA WSGLCKLW+VP+C L+ T RGH+ NVGAI FHP  +   +    +LAS
Sbjct: 238 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 297

Query: 217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTP 271
           CA DGSVKLWSLD D P+A++EGH   RV+R+ +HPSGRFLGT C+D SWRL        
Sbjct: 298 CAADGSVKLWSLDSDEPVADIEGHT-VRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEE 356

Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ 331
           + + EGH    V  I FH  G   GT   D   R+WDL  G+ ++  EGH K +Y ++F 
Sbjct: 357 ILHQEGHS-MGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFS 415

Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKI 390
            +G  +ATG  D   +VWDLR  RC+  +  H   V  V F P  G  L TG+ DN  KI
Sbjct: 416 PNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKI 475

Query: 391 W 391
           W
Sbjct: 476 W 476

Involved in pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|Q9DAW6|PRP4_MOUSE U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1

 Score =  285 bits (730), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/301 (50%), Positives = 193/301 (64%), Gaps = 11/301 (3%)

Query: 100 LFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCS 159
           L+   YSL +A +RL +A+ H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC 
Sbjct: 178 LWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCH 237

Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLAS 216
           FSP+S+ +ATA WSGLCKLW+VP+C L+ T RGH+ NVGAI FHP  +   +    +LAS
Sbjct: 238 FSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 297

Query: 217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTP 271
           CA DGSVKLWSLD D P+A++EGH   RV+R+ +HPSGRFLGT C+D SWRL        
Sbjct: 298 CAADGSVKLWSLDSDEPVADIEGH-TVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEE 356

Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ 331
           + + EGH    V  I FH  G   GT   D   R+WDL  G+ ++  EGH K +Y ++F 
Sbjct: 357 ILHQEGHS-MGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFS 415

Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKI 390
            +G  +ATG  D   +VWDLR  RC+  +  H   V  V F P  G  L TG+ DN  KI
Sbjct: 416 PNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKI 475

Query: 391 W 391
           W
Sbjct: 476 W 476

Involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q5NVD0|PRP4_PONAB U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1

 Score =  284 bits (727), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/301 (49%), Positives = 192/301 (63%), Gaps = 11/301 (3%)

Query: 100 LFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCS 159
           L+   YSL +A +RL +A+ H  IPE TR ++ QEL K L SL+ +CSQ+GD RPISYC 
Sbjct: 178 LWIANYSLPRAMKRLEEARLHKEIPETTRASQMQELHKSLRSLNNFCSQIGDDRPISYCH 237

Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLAS 216
           FSP+S+ +ATA WSGLCKLW+VP+C L+ T RGH+ NVGAI FHP  +   +    +LAS
Sbjct: 238 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 297

Query: 217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTP 271
           CA DGSVKLWSLD D P+A++EGH   RV+R+ +HPSGRFLGT C+D SWRL        
Sbjct: 298 CAADGSVKLWSLDSDEPVADIEGH-TVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEE 356

Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ 331
           + + EGH    V  I FH  G   GT   D   R+WDL  G+ ++  EGH K +Y ++F 
Sbjct: 357 ILHQEGHS-MGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFS 415

Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKI 390
            +G  +ATG  D   +VWDLR  RC+  +  H   V  V F P  G  L TG+ DN  KI
Sbjct: 416 PNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKI 475

Query: 391 W 391
           W
Sbjct: 476 W 476

Involved in pre-mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 164/301 (54%), Gaps = 54/301 (17%)

Query: 104 EYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPD 163
           ++S+ +A  R+ +AK     P+    A  +   KH   +++ CS  GD RP++ CSFS D
Sbjct: 207 KFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRD 266

Query: 164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV 223
                                             G I             LA+C+  G  
Sbjct: 267 ----------------------------------GKI-------------LATCSLSGVT 279

Query: 224 KLWSLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLD-TPLANLEGH 278
           KLW + + T  +A L+ H+  R + + F P    L T   D +   W+ D T L   EGH
Sbjct: 280 KLWEMPQVTNTIAVLKDHKE-RATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGH 338

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
              R++R+ FHPSG++LGT  +D +WRLWD+N G E+L QEGH + VY ++FQ DG++ A
Sbjct: 339 LD-RLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           + GLD+  RVWDLRTGR I+  +GH+K VFSV+FSP+GYHLA+G EDN  +IWDLR R+ 
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS 457

Query: 399 L 399
           L
Sbjct: 458 L 458

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTC7|YIDC_SCHPO Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.12 PE=4 SV=1

 Score =  206 bits (524), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/298 (37%), Positives = 159/298 (53%), Gaps = 43/298 (14%)

Query: 105 YSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDS 164
           YSL KAK RL K +E   IP        +   +HL    +  SQ+G  RPI+   FS + 
Sbjct: 125 YSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEHLQKAELMGSQIGGERPIAIVRFSNNG 184

Query: 165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL----PSEGAVCSLASCAQD 220
            H A+ SW G  K+W       VQ FRGH   V  ++++PL     ++    +LA+ A D
Sbjct: 185 NHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAAD 244

Query: 221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP 280
            +V LW   + TPL  LEGH   RV R+ FHPSG +L +  +D +W              
Sbjct: 245 NTVCLWKASQSTPLLRLEGHLA-RVGRVAFHPSGDYLVSASFDTTW-------------- 289

Query: 281 FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG 340
                                   RLWD++ G E+L QEGH + ++ ++ Q DGS+V++G
Sbjct: 290 ------------------------RLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSG 325

Query: 341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           G DA GR+WDLR+G+ IM L+ H++ + ++ +SP+GY LAT S D+ VKIWDLRK  L
Sbjct: 326 GNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSL 383

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P20053|PRP4_YEAST U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP4 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 164/296 (55%), Gaps = 45/296 (15%)

Query: 105 YSLAKAKERLAKAKEHLHIPEATRT---ARNQELQKHLTSLSIYCSQVGDTRPISYCSFS 161
           YSL ++++RL K  E  H    TR    +R  ELQ+ + +L +  SQ+  T+PIS  S S
Sbjct: 127 YSLERSRKRLQKEMER-HQKFNTRQELLSRRTELQR-MANLELAGSQLVSTKPISAVSLS 184

Query: 162 PDSQHVATASWSGLCKLWTVPECE-LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD 220
            D   VAT SW+G  ++      + L Q    H   +GAI++HP  +      + SCA+D
Sbjct: 185 TDDMVVATGSWAGDLQVLNSQTLQPLTQKLDSHVGKIGAIDWHPDSNN----QMISCAED 240

Query: 221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP 280
           G      L K+   +N EG               R LG               +L GHE 
Sbjct: 241 G------LIKNFQYSNEEG-------------GLRLLG---------------DLVGHER 266

Query: 281 FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG 340
            R+S +K+HPSG+F+G+   D +WRLWD +  QE+L QEGH K V+ +SFQ DGS+V +G
Sbjct: 267 -RISDVKYHPSGKFIGSASHDMTWRLWDASTHQELLLQEGHDKGVFSLSFQCDGSLVCSG 325

Query: 341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR 396
           G+D+   +WD+R+G  +M L GH K +++V +SP+GY +ATG  D  + +WD+RKR
Sbjct: 326 GMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQVATGGGDGIINVWDIRKR 381

Involved in RNA splicing. Is required for the association of U4/U6 snRNP with U5 snRNP in an early step of spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 12/260 (4%)

Query: 146  CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL 205
            C+  G T  ++   F+PD   +A+ S     +LW +   + + TF+GH   V ++ F+P 
Sbjct: 1236 CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP- 1294

Query: 206  PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS 265
              +G++  LAS + D +V+LW +     L   +GH  + VS + F P G  L +   D +
Sbjct: 1295 --DGSM--LASGSGDQTVRLWEISSSKCLHTFQGHTSW-VSSVTFSPDGTMLASGSDDQT 1349

Query: 266  WRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG 320
             RL        L    GH  + V  + F P G  L +   D + RLW ++ G+ +   +G
Sbjct: 1350 VRLWSISSGECLYTFLGHTNW-VGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQG 1408

Query: 321  HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
            H   V  + F  DG+++A+G  D   R+W++ +G C+  L GH+ SV SV FS DG  LA
Sbjct: 1409 HNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILA 1468

Query: 381  TGSEDNAVKIWDLRKRRLLK 400
            +GS+D  +K+WD++    +K
Sbjct: 1469 SGSDDETIKLWDVKTGECIK 1488

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 138/292 (47%), Gaps = 20/292 (6%)

Query: 124  PEATRTARNQE--LQKHLTSLSIYCSQV--GDTRPISYCSFSPDSQHVATASWSGLCKLW 179
            P+  R A   +    K   + S  C+Q   G    +   +FSPD Q VA+ S     K+W
Sbjct: 935  PDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIW 994

Query: 180  TVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG 239
                    QT  GH  +V ++ F P   +G    +AS + D ++K+W     T    LEG
Sbjct: 995  DTASGTCTQTLEGHGGSVWSVAFSP---DGQ--RVASGSDDKTIKIWDTASGTCTQTLEG 1049

Query: 240  HEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRF 294
            H  + V  + F P G+ + +   DH+ ++      T    LEGH    V  + F P G+ 
Sbjct: 1050 HGGW-VQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGD-SVWSVAFSPDGQR 1107

Query: 295  LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG 354
            + +   D + ++WD   G      EGHG  V+ ++F  DG  VA+G +D   ++WD  +G
Sbjct: 1108 VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167

Query: 355  RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL 406
             C   LEGH   V SV FSPDG  +A+GS D  +KIWD         CTQ L
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGT----CTQTL 1215

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 150/306 (49%), Gaps = 31/306 (10%)

Query: 137  KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCN 196
            K+++SL       G T  I   +FSPDSQ +A+AS     +LW +   +  Q    H   
Sbjct: 969  KYISSLE------GHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDW 1022

Query: 197  VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF 256
            V A+ FHP   +G +  +A+ + D +VKLW++     L  L  H   ++  + + P G+ 
Sbjct: 1023 VYAVVFHP---QGKI--IATGSADCTVKLWNISTGQCLKTLSEHSD-KILGMAWSPDGQL 1076

Query: 257  LGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ 311
            L +   D S RL        +  L GH   RV    F P+G  + TC  D + ++WD  Q
Sbjct: 1077 LASASADQSVRLWDCCTGRCVGILRGHSN-RVYSAIFSPNGEIIATCSTDQTVKIWDWQQ 1135

Query: 312  GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD 371
            G+ +    GH   V+ ++F  DG ++A+   D   R+WD+ TG+C     GH   V SV 
Sbjct: 1136 GKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVA 1195

Query: 372  FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL--------PNSIGVTSLLTDLYIDV 423
            FSPDG  +A+GS+D  V+IW+++       C Q+L         N  GVT  LT   I  
Sbjct: 1196 FSPDGEVVASGSQDQTVRIWNVKTGE----CLQILRAKRLYEGMNITGVTG-LTKATIFT 1250

Query: 424  LESLNP 429
            L++L  
Sbjct: 1251 LQALGA 1256

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
193666990	507	PREDICTED: u4/U6 small nuclear ribonucle	0.794	0.737	0.520	1e-131
350413006	525	PREDICTED: U4/U6 small nuclear ribonucle	0.806	0.723	0.495	1e-129
340708706	525	PREDICTED: u4/U6 small nuclear ribonucle	0.806	0.723	0.495	1e-129
48116262	525	PREDICTED: u4/U6 small nuclear ribonucle	0.806	0.723	0.493	1e-125
380028595	525	PREDICTED: U4/U6 small nuclear ribonucle	0.806	0.723	0.493	1e-125
242023811	509	U4/U6 small nuclear ribonucleoprotein Pr	0.789	0.730	0.482	1e-124
189234886	511	PREDICTED: similar to wd-repeat protein	0.766	0.706	0.510	1e-124
383856641	525	PREDICTED: U4/U6 small nuclear ribonucle	0.806	0.723	0.495	1e-121
332372646	507	unknown [Dendroctonus ponderosae]	0.764	0.710	0.497	1e-118
307194495	523	U4/U6 small nuclear ribonucleoprotein Pr	0.794	0.715	0.477	1e-118

>gi|193666990|ref|XP_001949663.1| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4-like [Acyrthosiphon pisum]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/480 (52%), Positives = 307/480 (63%), Gaps = 106/480 (22%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT---NVHTSNVYMEIDDE 57
           MSDDE++ YVKKQ T+HYGSLE+QER RL++    ++D E      N++ SN Y +++D 
Sbjct: 1   MSDDEEITYVKKQKTIHYGSLEDQERIRLSSLAFTENDGEPKVVGGNINVSNEYFDLEDA 60

Query: 58  MAKDKQALLQEFERRKKARHVNVSTDDNQVKLN-------------------------LR 92
           ++KDKQALL+EFER+KKARHV VSTDD++VK N                         L 
Sbjct: 61  ISKDKQALLEEFERKKKARHVQVSTDDDEVKKNLRKLGQAICLFGEGPAERRNRLRELLS 120

Query: 93  QLGEPIC---------------------------------LFGEEYSLAKAKERLAKAKE 119
           ++GE +                                  L+  EYSL ++  RL K +E
Sbjct: 121 RVGEDVVAKKPEEEREKRQQIKDQDTTWYHEGPPSLLDARLYMAEYSLLRSHIRLEKLRE 180

Query: 120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
              IPE+T TAR Q+L K+ TSLSIYCSQ+GDTRPISYC FSPDS+ +AT+SWSGLCKLW
Sbjct: 181 EASIPESTLTARLQDLHKYTTSLSIYCSQIGDTRPISYCRFSPDSKFIATSSWSGLCKLW 240

Query: 180 TVPECELVQTFRGHDCNVGAIEFHPLPSEGA-VCSLASCAQDGSVKLWSLD--KDTPLAN 236
           +VP+C LVQTFRGH+CNV +I F+P       VC L SCA DGSVKLWS+D  K+ P+A+
Sbjct: 241 SVPDCSLVQTFRGHNCNVCSITFNPHAGTAENVCDLVSCASDGSVKLWSMDSKKEEPVAD 300

Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG 296
           LEGH PFRVSR  FHPSGRFLGTCC+D+SW                              
Sbjct: 301 LEGHAPFRVSRADFHPSGRFLGTCCFDNSW------------------------------ 330

Query: 297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC 356
                   RLWDL QG+EVLHQEGH KPVYCMSFQ DGS+VATGGLDAFGRVWDLRTGRC
Sbjct: 331 --------RLWDLEQGEEVLHQEGHCKPVYCMSFQCDGSIVATGGLDAFGRVWDLRTGRC 382

Query: 357 IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLL 416
           IMF+EGHLKS++S+DFSP+GY +ATGSEDN  +IWD+RKR     C   +P  + + S L
Sbjct: 383 IMFMEGHLKSIYSIDFSPNGYQMATGSEDNTCRIWDVRKRS----CLYTIPAHMSLVSGL 438

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413006|ref|XP_003489846.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Bombus impatiens]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/507 (49%), Positives = 308/507 (60%), Gaps = 127/507 (25%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------------VHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RL A  +  ++++  TN             +H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLVAVAESAEEEKTTTNLGDNASATATLGNIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLR--------------- 92
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLR               
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLDEPICLFGEGPAD 120

Query: 93  ---QLGEPICLFGEE-----------------------------------------YSLA 108
              +L E +   GE+                                         YSL 
Sbjct: 121 RRTRLRELLANLGEDAIKKKHEEEEKPSHPIERDTETTWYHEGPDSLQIARSWIATYSLP 180

Query: 109 KAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVA 168
           +AK RL KA++ L +P ATRTAR QEL K L +L+IYCSQ+GDTRPIS+C FSP+S+ +A
Sbjct: 181 RAKARLGKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKLLA 240

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---------EGAVCSLASCAQ 219
           TASWSGLCK+W+VP+C L++T +GH CNVG I FHP  +          G  C LASCA 
Sbjct: 241 TASWSGLCKIWSVPDCTLLRTLKGHTCNVGCIVFHPKATITEEVVGEKSGQTCVLASCAS 300

Query: 220 DGSVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
           DG+VKLWS    + PLA +EGHEP RVSR+ FHPSGRFLGTCC+D SW            
Sbjct: 301 DGTVKLWSGGSGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASW------------ 348

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
                                     RLWDL Q  EVLHQEGH + V+C+SFQGDGSV A
Sbjct: 349 --------------------------RLWDLEQQAEVLHQEGHARAVHCISFQGDGSVSA 382

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           TGG D+FGRVWDLRTGRCIMF+EGHLKS+F +DFSP+G+H+AT SEDN  KIWDLRKR  
Sbjct: 383 TGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNGFHIATASEDNTSKIWDLRKRS- 441

Query: 399 LKWCTQLLPNSIGVTSLLTDLYIDVLE 425
              C   +P     T+LL+D+    +E
Sbjct: 442 ---CVYTIPAH---TNLLSDVKYQRIE 462

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708706|ref|XP_003392963.1| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4-like [Bombus terrestris]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/507 (49%), Positives = 308/507 (60%), Gaps = 127/507 (25%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------------VHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RL A  +  ++++  TN             +H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLVAVAESSEEEKNITNLGDNANATATLGNIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLR--------------- 92
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLR               
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLDEPICLFGEGPAD 120

Query: 93  ---QLGEPICLFGEE-----------------------------------------YSLA 108
              +L E +   GE+                                         YSL 
Sbjct: 121 RRTRLRELLANLGEDAIKKKHEEEEKPSHPIERDTETTWYHEGPDSLQIARSWIATYSLP 180

Query: 109 KAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVA 168
           +AK RL KA++ L +P ATRTAR QEL K L +L+IYCSQ+GDTRPIS+C FSP+S+ +A
Sbjct: 181 RAKARLGKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKLLA 240

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---------EGAVCSLASCAQ 219
           TASWSGLCK+W+VP+C L++T +GH CNVG I FHP  +          G  C LASCA 
Sbjct: 241 TASWSGLCKIWSVPDCTLLRTLKGHTCNVGCIVFHPKATITEEVVGEKSGQTCVLASCAS 300

Query: 220 DGSVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
           DG+VKLWS    + PLA +EGHEP RVSR+ FHPSGRFLGTCC+D SW            
Sbjct: 301 DGTVKLWSGGSGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASW------------ 348

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
                                     RLWDL Q  EVLHQEGH + V+C+SFQGDGSV A
Sbjct: 349 --------------------------RLWDLEQQAEVLHQEGHARAVHCISFQGDGSVSA 382

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           TGG D+FGRVWDLRTGRCIMF+EGHLKS+F +DFSP+G+H+AT SEDN  KIWDLRKR  
Sbjct: 383 TGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNGFHIATASEDNTSKIWDLRKRS- 441

Query: 399 LKWCTQLLPNSIGVTSLLTDLYIDVLE 425
              C   +P     T+LL+D+    +E
Sbjct: 442 ---CVYTIP---AHTNLLSDVKYQRIE 462

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48116262|ref|XP_393186.1| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4 [Apis mellifera]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/507 (49%), Positives = 308/507 (60%), Gaps = 127/507 (25%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT-------------NVHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +  ++++  T             N+H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAAVAESSEEEKDTTTLGDNVNTVATLANIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYS- 106
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLRQLGEPICLFGE  + 
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKRNLRQLGEPICLFGEGPAD 120

Query: 107 -LAKAKERLAKAKE-------------------------HLHIPEATRTARN-------- 132
              + +E LA   E                         +   PE+ + AR+        
Sbjct: 121 RRTRLRELLANLGEDAIKKKHEEEEKPSHPIERDTETTWYHEGPESLQIARSWIATYSLP 180

Query: 133 ----------QELQ--------------KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVA 168
                     Q+L+              K L +L+IYCSQ+GDTRPIS+C FSP+S+ +A
Sbjct: 181 RAKARLDKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKVLA 240

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---------EGAVCSLASCAQ 219
           TASWSGLCKLW+VP+C L++T +GH CNVG I FHP  +          G  C LASCA 
Sbjct: 241 TASWSGLCKLWSVPDCTLLRTLKGHTCNVGCIVFHPKATITEEVVGERAGQTCVLASCAS 300

Query: 220 DGSVKLWSLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
           DG+VKLWS    + PLA +EGHEP RVSR+ FHPSGRFLGTCC+D SW            
Sbjct: 301 DGTVKLWSGGFGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASW------------ 348

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
                                     RLWDL Q  EVLHQEGH + V+C+SFQGDGSV A
Sbjct: 349 --------------------------RLWDLEQQAEVLHQEGHARAVHCISFQGDGSVSA 382

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           TGG D+FGRVWDLRTGRCIMF+EGHLKS+F +DFSP+G+H+AT SEDN  KIWDLRKR  
Sbjct: 383 TGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNGFHIATASEDNTCKIWDLRKRS- 441

Query: 399 LKWCTQLLPNSIGVTSLLTDLYIDVLE 425
              C   +P     T+LL+D+    +E
Sbjct: 442 ---CVYTIPAH---TNLLSDVKYQRIE 462

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028595|ref|XP_003697980.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Apis florea]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/507 (49%), Positives = 308/507 (60%), Gaps = 127/507 (25%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT-------------NVHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +  ++++  T             N+H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAAVAESSEEEKDTTTLGDNVNNVATLANIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYS- 106
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLRQLGEPICLFGE  + 
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKRNLRQLGEPICLFGEGPAD 120

Query: 107 -LAKAKERLAKAKE-------------------------HLHIPEATRTARN-------- 132
              + +E LA   E                         +   PE+ + AR+        
Sbjct: 121 RRTRLRELLANLGEDAIKKKHEEEEKPSHPIERDTETTWYHEGPESLQIARSWIATYSLP 180

Query: 133 ----------QELQ--------------KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVA 168
                     Q+L+              K L +L+IYCSQ+GDTRPIS+C FSP+S+ +A
Sbjct: 181 RAKARLDKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKVLA 240

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---------EGAVCSLASCAQ 219
           TASWSGLCKLW+VP+C L++T +GH CNVG I FHP  +          G  C LASCA 
Sbjct: 241 TASWSGLCKLWSVPDCTLLRTLKGHTCNVGCIVFHPKATIAEEVVGERTGQTCVLASCAS 300

Query: 220 DGSVKLWSLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
           DG+VKLWS    + PLA +EGHEP RVSR+ FHPSGRFLGTCC+D SW            
Sbjct: 301 DGTVKLWSGGFGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASW------------ 348

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
                                     RLWDL Q  EVLHQEGH + V+C+SFQGDGSV A
Sbjct: 349 --------------------------RLWDLEQQAEVLHQEGHARAVHCISFQGDGSVSA 382

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           TGG D+FGRVWDLRTGRCIMF+EGHLKS+F +DFSP+G+H+AT SEDN  KIWDLRKR  
Sbjct: 383 TGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNGFHIATASEDNTCKIWDLRKRS- 441

Query: 399 LKWCTQLLPNSIGVTSLLTDLYIDVLE 425
              C   +P     T+LL+D+    +E
Sbjct: 442 ---CVYTIPAH---TNLLSDVKYQRIE 462

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023811|ref|XP_002432324.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Pediculus humanus corporis] gi|212517747|gb|EEB19586.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Pediculus humanus corporis]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/479 (48%), Positives = 303/479 (63%), Gaps = 107/479 (22%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT----NVHTSNVYMEIDD 56
           MSDDE++IYVK+   +HYGSLEEQER +L  +   D D++  +    N+H S+ YM+I+D
Sbjct: 1   MSDDEEIIYVKRPKKIHYGSLEEQERAKLLESLKDDADKDAGSLLSGNIHISDEYMDIED 60

Query: 57  EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLN-------------------------L 91
           E++KD+ ALL+EFERRK+AR ++VSTDD+QVK N                         L
Sbjct: 61  EVSKDRAALLEEFERRKRARQIHVSTDDDQVKKNLRQLGEPICLFGEGPADRRSRLRDLL 120

Query: 92  RQLGE----------------------------PICLFGEE-----YSLAKAKERLAKAK 118
            +LGE                            P+ L         YSL +A++R+ +AK
Sbjct: 121 SKLGEDAIQRKQVEEETRIQQEKDQESTWYHEGPMALRTARLWIAVYSLPRAQKRIEEAK 180

Query: 119 EHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKL 178
                 + +RTAR  E+ K + +++I+ SQ+GDTRPIS+C FSP+S+++ATASWSGLCKL
Sbjct: 181 MRAQQSDTSRTARRNEVHKKIQAVTIFASQIGDTRPISFCQFSPNSEYLATASWSGLCKL 240

Query: 179 WTVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLA 235
           W+VP+CEL++T++GH+CNVGAI FHP+ +       CSLASCA DG+VKLWSL+ D P+ 
Sbjct: 241 WSVPKCELIKTYKGHNCNVGAIVFHPMATLEERNNSCSLASCASDGTVKLWSLENDEPIK 300

Query: 236 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL 295
           ++EGH P+RVS++ FHPSGRFLGTCC+D SW                             
Sbjct: 301 DIEGHAPYRVSKLAFHPSGRFLGTCCYDSSW----------------------------- 331

Query: 296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR 355
                    RLWDL+ GQEVLHQEGH KPV+C+SFQ DGSV A+GGLDAF RVWDLRTGR
Sbjct: 332 ---------RLWDLSIGQEVLHQEGHCKPVHCLSFQNDGSVAASGGLDAFARVWDLRTGR 382

Query: 356 CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTS 414
           CIMF+EGHLKS++S+DFSPD Y +ATGSEDN  KIWDLRKR     C   +P  + + S
Sbjct: 383 CIMFMEGHLKSIYSIDFSPDCYQVATGSEDNTCKIWDLRKRE----CVYTIPAHMNLIS 437

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234886|ref|XP_974218.2| PREDICTED: similar to wd-repeat protein [Tribolium castaneum] gi|270001442|gb|EEZ97889.1| hypothetical protein TcasGA2_TC000271 [Tribolium castaneum]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/466 (51%), Positives = 284/466 (60%), Gaps = 105/466 (22%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------VHTSNVYME 53
           MSDDED  YVKK   +HYGSLEE ER RLAA    DD  EK  +       VH S  YME
Sbjct: 1   MSDDEDAPYVKKTKNIHYGSLEEAERARLAAGDGNDDSNEKAESTSANPPQVHISTEYME 60

Query: 54  IDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQ------------------LG 95
           ++D M++DKQALL+EFERR+KAR +NVSTDD +VK NLRQ                  L 
Sbjct: 61  LEDAMSRDKQALLEEFERRRKARSINVSTDDAEVKRNLRQLGEPICLFGEGPADRRSRLR 120

Query: 96  EPICLFGEE---------------------------------------YSLAKAKERLAK 116
           E +   GE+                                       YSL +AK RL +
Sbjct: 121 EILSRIGEDAVIRREAEEERKNFEKDLETTWYHEGPESLRIARLWIAHYSLPRAKARLEE 180

Query: 117 AKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLC 176
           A++   +  ATRTA+ QE+QK L  +SIY SQ+GD+RPI+YC FSPDS+ +ATA WSGLC
Sbjct: 181 ARKAKDLSTATRTAKKQEIQKKLQIMSIYSSQIGDSRPIAYCQFSPDSKLLATAGWSGLC 240

Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHP---LPSEGAVCSLASCAQDGSVKLWSLDKDTP 233
           K+W+VP+C L QT +GH CN  AI FHP   +  E  +C++ASCA DGSVKLW    + P
Sbjct: 241 KVWSVPDCTLKQTLKGHACNASAIIFHPRATISQEENICNMASCAADGSVKLWDFQSEEP 300

Query: 234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGR 293
           +A++EGH P RVSR+ FHPSGRFLGTCC+D SW                           
Sbjct: 301 IADIEGHMPHRVSRLGFHPSGRFLGTCCFDCSW--------------------------- 333

Query: 294 FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
                      RLWDL Q  EVLHQEGH KPVYC+SFQ DGSV ATGGLD+FGRVWDLRT
Sbjct: 334 -----------RLWDLQQCTEVLHQEGHVKPVYCISFQIDGSVCATGGLDSFGRVWDLRT 382

Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
           GRCIMF+E HLK+V  +DFSPDGYH+AT SEDN  KIWDLRKR +L
Sbjct: 383 GRCIMFMESHLKAVLGIDFSPDGYHIATSSEDNTCKIWDLRKRSVL 428

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856641|ref|XP_003703816.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Megachile rotundata]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/507 (49%), Positives = 308/507 (60%), Gaps = 127/507 (25%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------------VHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +  ++++  TN             +H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAAAAESSEEEKDSTNLGDSINATITLANIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLR--------------- 92
           SN YME++DEM+K++QALL+EFER+KKAR +NVSTDD++VK NLR               
Sbjct: 61  SNEYMELEDEMSKNRQALLEEFERKKKARQINVSTDDSEVKKNLRQLGEPICLFGEGPAD 120

Query: 93  ---QLGEPICLFGEE-----------------------------------------YSLA 108
              +L E +   GE+                                         YSL 
Sbjct: 121 RRTRLRELLANLGEDAIKKKHEEDEKPLHATERDTETTWYHEGPESLQIARSWIAAYSLP 180

Query: 109 KAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVA 168
           +AK RL KA++ L +P ATRTAR QEL K L +L+IYCSQ+GDTRPIS+C FSP+S+ +A
Sbjct: 181 RAKARLDKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKMLA 240

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---------EGAVCSLASCAQ 219
           TASWSGLCKLW+VP+C L++T +GH CNVG I FHP  +          G  C LASCA 
Sbjct: 241 TASWSGLCKLWSVPDCTLLRTLKGHTCNVGCIVFHPKATITEEVVGNKAGQTCVLASCAS 300

Query: 220 DGSVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
           DGSVKLWS    + PLA +EGHEP RVSR+ FHPSGRFLGTCC+D SW            
Sbjct: 301 DGSVKLWSGGSGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASW------------ 348

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
                                     RLWDL Q  EVLHQEGH + V+C+SFQ DGSV A
Sbjct: 349 --------------------------RLWDLEQQAEVLHQEGHARAVHCISFQCDGSVSA 382

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           TGG D+FGRVWDLRTGRCIMF+EGHLKS+F +DFSP+G+H+AT SEDN  KIWDLRKR  
Sbjct: 383 TGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNGFHIATASEDNTCKIWDLRKRS- 441

Query: 399 LKWCTQLLPNSIGVTSLLTDLYIDVLE 425
              C   +P     T+LL+D+    +E
Sbjct: 442 ---CVYTIP---AHTNLLSDVKYQRIE 462

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372646|gb|AEE61465.1| unknown [Dendroctonus ponderosae]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/466 (49%), Positives = 287/466 (61%), Gaps = 106/466 (22%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKD--VDDDQEKYTNV-----HTSNVYME 53
           MSDDE V Y KK  T+HYGSLE+ ER RL    D    D  +  + V       +N YME
Sbjct: 1   MSDDE-VSYAKKIKTIHYGSLEDAERARLENTHDDGKSDTSDSDSGVPPPQHEGNNEYME 59

Query: 54  IDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLN----------------------- 90
           +++ M++DKQALL+EFERRKKAR +NVSTDD +VK N                       
Sbjct: 60  LEEAMSRDKQALLEEFERRKKARSINVSTDDGEVKRNLRQLGEPICLFGEGPAERRSRLR 119

Query: 91  --LRQLGEPICLFGE--------------------------------EYSLAKAKERLAK 116
             L +LGE   +  E                                +YSL +AK RLA+
Sbjct: 120 DILSRLGEDSVIRREAEEERKLYEKDQEQTWYHEGPESLRIARLWLADYSLPRAKARLAE 179

Query: 117 AKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLC 176
           A+  + +P  T+TA+ QELQK L  ++I+ SQ+GD RPISYC+FSP+S+ +ATASWSGLC
Sbjct: 180 ARSLMELPATTKTAKFQELQKKLQQMAIHSSQIGDNRPISYCTFSPNSKLLATASWSGLC 239

Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHP---LPSEGAVCSLASCAQDGSVKLWSLDKDTP 233
           K+W+VP+CEL QT +GH CNVGAI FHP   +     VC++ASCA DGSVKLW L  + P
Sbjct: 240 KVWSVPDCELKQTLKGHACNVGAIVFHPKATISQPENVCNMASCAADGSVKLWDLKGEEP 299

Query: 234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGR 293
           +A++EGH P RVSRI FHPSGRFLGTCC+D+SW                           
Sbjct: 300 IADIEGHIPHRVSRISFHPSGRFLGTCCFDNSW--------------------------- 332

Query: 294 FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
                      RLWDL Q  EVLHQEGH KPVYCMSFQ DGSV A+GGLD+FGRVWDLRT
Sbjct: 333 -----------RLWDLEQCTEVLHQEGHVKPVYCMSFQTDGSVCASGGLDSFGRVWDLRT 381

Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
           GRCIMF+EGHLK+++ +DFS +GY++AT SEDN+ KIWDLRKR  L
Sbjct: 382 GRCIMFMEGHLKAIYGIDFSSNGYNIATASEDNSCKIWDLRKRASL 427

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194495|gb|EFN76787.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Harpegnathos saltator]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/501 (47%), Positives = 293/501 (58%), Gaps = 127/501 (25%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT-------------NVHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +V D ++  T             NVH 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERTRLAAAVEVTDGEKDVTTTDDITNASISAGNVHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFE------------------------------------- 70
           SN YME+++EM+KD+QALL+EFE                                     
Sbjct: 61  SNEYMELEEEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPAD 120

Query: 71  RRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEE----------------------YSLA 108
           RR + R +  S  ++ +K    +  +P  +   +                      YSL 
Sbjct: 121 RRTRLRELLASVGEDAIKKKHEEEEKPSHIIERDTENTWYHEGPDSLQIARSWIASYSLP 180

Query: 109 KAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVA 168
           +AK RL +A+  L +P ATRTAR QEL K L +LSIYCSQ+GDTRPIS+C FSP+SQ + 
Sbjct: 181 RAKARLERARLDLELPAATRTARRQELLKKLQALSIYCSQIGDTRPISFCQFSPNSQILV 240

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---------EGAVCSLASCAQ 219
           TASWSGLCKLW+VP+C L++T +GH CNVG I FHP  +          G  C LASCA 
Sbjct: 241 TASWSGLCKLWSVPDCTLLRTLKGHACNVGCIVFHPKATITEDVIGENAGQTCVLASCAT 300

Query: 220 DGSVKLWS-LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
           DG+VKLWS  + + PLA +EGHEP RVSRI FHPSGRFLGTCC D SW            
Sbjct: 301 DGTVKLWSGGNGEEPLAEVEGHEPNRVSRIAFHPSGRFLGTCCHDSSW------------ 348

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA 338
                                     RLWDL Q  EVLHQEGH +PV+C+SFQ DGSV A
Sbjct: 349 --------------------------RLWDLEQQAEVLHQEGHARPVHCISFQCDGSVCA 382

Query: 339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
           TGG D+FGRVWDLRTGRCIMF+EGHL+S+F +DFSP+G+H+AT SEDN  KIWDLRKR  
Sbjct: 383 TGGHDSFGRVWDLRTGRCIMFMEGHLRSIFGIDFSPNGFHIATASEDNTCKIWDLRKRT- 441

Query: 399 LKWCTQLLPNSIGVTSLLTDL 419
              C   +P     T+LL+D+
Sbjct: 442 ---CIYTIPAH---TNLLSDV 456

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	471
ZFIN|ZDB-GENE-030131-5143	507	prpf4 "PRP4 pre-mRNA processin	0.566	0.526	0.528	1.3e-92
RGD|1311303	521	Prpf4 "PRP4 pre-mRNA processin	0.573	0.518	0.512	1.5e-89
UNIPROTKB|O43172	522	PRPF4 "U4/U6 small nuclear rib	0.573	0.517	0.508	1.5e-89
UNIPROTKB|F1NNQ9	521	PRPF4 "Uncharacterized protein	0.566	0.512	0.517	1.9e-89
UNIPROTKB|F1PZB0	537	PRPF4 "Uncharacterized protein	0.573	0.502	0.508	2.4e-89
UNIPROTKB|I3LDL8	539	PRPF4 "Uncharacterized protein	0.573	0.500	0.508	2.4e-89
UNIPROTKB|Q3MHE2	521	PRPF4 "U4/U6 small nuclear rib	0.573	0.518	0.508	3e-89
MGI|MGI:1917302	521	Prpf4 "PRP4 pre-mRNA processin	0.573	0.518	0.508	3e-89
FB|FBgn0036733	553	U4-U6-60K "U4-U6 small nuclear	0.802	0.683	0.367	1.4e-66
WB|WBGene00007972	496	prp-4 [Caenorhabditis elegans	0.564	0.536	0.351	3.8e-56

ZFIN|ZDB-GENE-030131-5143 prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 748 (268.4 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
 Identities = 147/278 (52%), Positives = 187/278 (67%)

Query:   123 IPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP 182
             IPE+TRT + QEL K+L +++ +CSQ+GD RPISYC FSP+S+ + TASWSGLCKLW VP
Sbjct:   187 IPESTRTIKQQELHKNLRNVNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLCKLWKVP 246

Query:   183 ECELVQTFRGHDCNVGAIEFHP---LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG 239
             +C L++T RGH+ NVGAI FHP   L  E +  ++ASCA DGSVKLWSLD D P+A++EG
Sbjct:   247 DCTLIRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEPIADIEG 306

Query:   240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRF 294
             H   RV+R+ +HPSGRFLGT C+DHSWRL        + + EGH    V  + FHP G  
Sbjct:   307 HS-MRVARVTWHPSGRFLGTTCYDHSWRLWDLEVQEEILHQEGHSK-GVHDLHFHPDGSL 364

Query:   295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG 354
              GT   D   R+WDL  G+ V+  EGH K +Y ++F  +G  VATG  D   +VWDLR  
Sbjct:   365 AGTGGLDSFARVWDLRTGRCVMFLEGHIKEIYSINFSPNGFHVATGSGDNACKVWDLRQR 424

Query:   355 RCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             RCI  +  H   V SV F P DG++L TG+ DN  KIW
Sbjct:   425 RCIYTIPAHQNLVSSVKFQPNDGHYLLTGAYDNTAKIW 462

GO:0008380 "RNA splicing" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

RGD|1311303 Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 709 (254.6 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 144/281 (51%), Positives = 180/281 (64%)

Query:   120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC FSP+S+ +ATA WSGLCKLW
Sbjct:   198 HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLW 257

Query:   180 TVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
             +VP+C L+ T RGH+ NVGAI FHP  +   +    +LASCA DGSVKLWSLD D P+A+
Sbjct:   258 SVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVAD 317

Query:   237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
             +EGH   RV+R+ +HPSGRFLGT C+D SWRL        + + EGH    V  I FH  
Sbjct:   318 IEGHT-VRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHS-MGVYDIAFHQD 375

Query:   292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
             G   GT   D   R+WDL  G+ ++  EGH K +Y +SF  +G  +ATG  D   +VWDL
Sbjct:   376 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNGYHIATGSGDNTCKVWDL 435

Query:   352 RTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             R  RC+  +  H   V  V F P  G  L TG+ DN  KIW
Sbjct:   436 RQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIW 476

GO:0005634 "nucleus" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA;ISO

GO:0071001 "U4/U6 snRNP" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|O43172 PRPF4 "U4/U6 small nuclear ribonucleoprotein Prp4" [Homo sapiens (taxid:9606)]

 Score = 707 (253.9 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 143/281 (50%), Positives = 180/281 (64%)

Query:   120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC FSP+S+ +ATA WSGLCKLW
Sbjct:   199 HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLW 258

Query:   180 TVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
             +VP+C L+ T RGH+ NVGAI FHP  +   +    +LASCA DGSVKLWSLD D P+A+
Sbjct:   259 SVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVAD 318

Query:   237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
             +EGH   RV+R+ +HPSGRFLGT C+D SWRL        + + EGH    V  I FH  
Sbjct:   319 IEGHT-VRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHS-MGVYDIAFHQD 376

Query:   292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
             G   GT   D   R+WDL  G+ ++  EGH K +Y ++F  +G  +ATG  D   +VWDL
Sbjct:   377 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDL 436

Query:   352 RTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             R  RC+  +  H   V  V F P  G  L TG+ DN  KIW
Sbjct:   437 RQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 477

GO:0016607 "nuclear speck" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=NAS

GO:0005681 "spliceosomal complex" evidence=IC;NAS

GO:0008380 "RNA splicing" evidence=NAS;TAS

GO:0006396 "RNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0015030 "Cajal body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0071001 "U4/U6 snRNP" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1NNQ9 PRPF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 713 (256.0 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
 Identities = 144/278 (51%), Positives = 181/278 (65%)

Query:   123 IPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP 182
             IPEATRT++ QEL K L SL+ +CSQ+GD RP+SYC FSP+S+ +ATA WSGLCKLW+VP
Sbjct:   201 IPEATRTSQRQELHKSLRSLNNFCSQIGDDRPLSYCHFSPNSKLLATACWSGLCKLWSVP 260

Query:   183 ECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLANLEG 239
             +C LV T RGH  NVGAI FHP  +   +    +LASCA DGSVKLWSL+ D P+A++EG
Sbjct:   261 DCNLVHTLRGHSTNVGAIVFHPKATVSLDKKDVNLASCAADGSVKLWSLESDEPVADIEG 320

Query:   240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRF 294
             H   RV+R+ +HPSGRFLGT C+DHSWRL        + + EGH    V  I FH  G  
Sbjct:   321 HS-MRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSK-GVYDIAFHTDGSL 378

Query:   295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG 354
              GT   D   R+WDL  G+ ++  EGH K +Y ++F  +G  VATG  D   +VWDLR  
Sbjct:   379 AGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGLNFSPNGYHVATGSGDNTCKVWDLRQR 438

Query:   355 RCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIW 391
             +CI  +  H   V  V F P+ G  L TG+ DN  KIW
Sbjct:   439 KCIYTIPAHQNLVTGVKFEPNHGNFLLTGAYDNTAKIW 476

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0071001 "U4/U6 snRNP" evidence=IEA

UNIPROTKB|F1PZB0 PRPF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 707 (253.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
 Identities = 143/281 (50%), Positives = 180/281 (64%)

Query:   120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC FSP+S+ +ATA WSGLCKLW
Sbjct:   214 HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLW 273

Query:   180 TVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
             +VP+C L+ T RGH+ NVGAI FHP  +   +    +LASCA DGSVKLWSLD D P+A+
Sbjct:   274 SVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVAD 333

Query:   237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
             +EGH   RV+R+ +HPSGRFLGT C+D SWRL        + + EGH    V  I FH  
Sbjct:   334 IEGHT-VRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHS-MGVYDIAFHQD 391

Query:   292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
             G   GT   D   R+WDL  G+ ++  EGH K +Y ++F  +G  +ATG  D   +VWDL
Sbjct:   392 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDL 451

Query:   352 RTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             R  RC+  +  H   V  V F P  G  L TG+ DN  KIW
Sbjct:   452 RQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 492

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|I3LDL8 PRPF4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 707 (253.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
 Identities = 143/281 (50%), Positives = 180/281 (64%)

Query:   120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC FSP+S+ +ATA WSGLCKLW
Sbjct:   216 HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLW 275

Query:   180 TVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
             +VP+C L+ T RGH+ NVGAI FHP  +   +    +LASCA DGSVKLWSLD D P+A+
Sbjct:   276 SVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVAD 335

Query:   237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
             +EGH   RV+R+ +HPSGRFLGT C+D SWRL        + + EGH    V  I FH  
Sbjct:   336 IEGHT-VRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHS-MGVYDIAFHQD 393

Query:   292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
             G   GT   D   R+WDL  G+ ++  EGH K +Y ++F  +G  +ATG  D   +VWDL
Sbjct:   394 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDL 453

Query:   352 RTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             R  RC+  +  H   V  V F P  G  L TG+ DN  KIW
Sbjct:   454 RQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 494

GO:0071001 "U4/U6 snRNP" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|Q3MHE2 PRPF4 "U4/U6 small nuclear ribonucleoprotein Prp4" [Bos taurus (taxid:9913)]

 Score = 707 (253.9 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 143/281 (50%), Positives = 180/281 (64%)

Query:   120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC FSP+S+ +ATA WSGLCKLW
Sbjct:   198 HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLW 257

Query:   180 TVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
             +VP+C L+ T RGH+ NVGAI FHP  +   +    +LASCA DGSVKLWSLD D P+A+
Sbjct:   258 SVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVAD 317

Query:   237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
             +EGH   RV+R+ +HPSGRFLGT C+D SWRL        + + EGH    V  I FH  
Sbjct:   318 IEGHT-VRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHS-MGVYDIAFHQD 375

Query:   292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
             G   GT   D   R+WDL  G+ ++  EGH K +Y ++F  +G  +ATG  D   +VWDL
Sbjct:   376 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDL 435

Query:   352 RTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             R  RC+  +  H   V  V F P  G  L TG+ DN  KIW
Sbjct:   436 RQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 476

GO:0016607 "nuclear speck" evidence=IEA

GO:0071001 "U4/U6 snRNP" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

MGI|MGI:1917302 Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 706 (253.6 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 143/281 (50%), Positives = 180/281 (64%)

Query:   120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             H  IPE TRT++ QEL K L SL+ +CSQ+GD RPISYC FSP+S+ +ATA WSGLCKLW
Sbjct:   198 HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLW 257

Query:   180 TVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
             +VP+C L+ T RGH+ NVGAI FHP  +   +    +LASCA DGSVKLWSLD D P+A+
Sbjct:   258 SVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVAD 317

Query:   237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPS 291
             +EGH   RV+R+ +HPSGRFLGT C+D SWRL        + + EGH    V  I FH  
Sbjct:   318 IEGHT-VRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHS-MGVYDIAFHQD 375

Query:   292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
             G   GT   D   R+WDL  G+ ++  EGH K +Y ++F  +G  +ATG  D   +VWDL
Sbjct:   376 GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDL 435

Query:   352 RTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIW 391
             R  RC+  +  H   V  V F P  G  L TG+ DN  KIW
Sbjct:   436 RQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIW 476

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISO

GO:0071001 "U4/U6 snRNP" evidence=ISO

FB|FBgn0036733 U4-U6-60K "U4-U6 small nuclear riboprotein factor 60K" [Drosophila melanogaster (taxid:7227)]

 Score = 579 (208.9 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 148/403 (36%), Positives = 209/403 (51%)

Query:    21 LEEQERKRLAANKDVD-DDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVN 79
             LEE ERK+ A   +V  DD E  +N+   N  +    E   +++  L+E         +N
Sbjct:   116 LEEFERKKRARQINVSTDDTEIKSNLRQLNEPICYFGEGPAERRRRLKELLAGLGENAIN 175

Query:    80 VST-DDNQVKLNLRQLGE-------P----IC-LFGEEYSXXXXXXXXXXXXXHLHIPEA 126
                 +D + K   R+  +       P    I  L+  +YS              L +P A
Sbjct:   176 KRQYEDEERKQQQREQDQATWYHEGPDSLRIARLWLADYSLPRAKDRLVRAREALEVPSA 235

Query:   127 TRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL 186
              R  R  E+QK L SL+  CSQVGDTRP+S  +FS DS  + T+SWSGLCKLW+VP+CEL
Sbjct:   236 ARAGRMVEMQKKLQSLAPLCSQVGDTRPVSSAAFSEDSSLLLTSSWSGLCKLWSVPDCEL 295

Query:   187 VQTFRGHDCNVGAIEFHP--LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
              QT RGH   VG +   P     E  V ++AS   DG+VKLW  + +  +A++ GH P R
Sbjct:   296 KQTLRGHASYVGGVALRPGVKADEENVVAMASGGHDGAVKLWGFNNEESIADITGHMPHR 355

Query:   245 VSRIKFHPSGRFLGTCCWDHSWRL-D----TPLANLEGH-EPFRVSRIKFHPSGRFLGTC 298
             VS++ FHPSGRFL T C+D SWRL D    T + + EGH +P  V  + +H  G  L T 
Sbjct:   356 VSKVAFHPSGRFLATACYDSSWRLWDLEQKTEVLHQEGHAKP--VHCLSYHSDGSVLVTG 413

Query:   299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM 358
               D   R+WDL  G+ ++  EGH   V+ + F  +G  +ATG  D   ++WDLR  + + 
Sbjct:   414 GLDAFGRVWDLRTGRCIMFLEGHLGAVFGVDFSPNGFHIATGSQDNTCKIWDLRRRQPVY 473

Query:   359 FLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKRRLLK 400
              +  H   +  V +  + G  L T S D+  KIW  +  + LK
Sbjct:   474 TIPAHTNLISDVKYQQECGSFLVTCSYDSTTKIWSNKTWQPLK 516

GO:0005688 "U6 snRNP" evidence=ISS

GO:0005687 "U4 snRNP" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0030621 "U4 snRNA binding" evidence=IDA

GO:0017070 "U6 snRNA binding" evidence=IDA

WB|WBGene00007972 prp-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 465 (168.7 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 97/276 (35%), Positives = 147/276 (53%)

Query:   124 PEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE 183
             P   +    QE  K +  ++++ SQV DTRP+++C FS DS+H+ TA WSG   +W   +
Sbjct:   176 PAHEKALARQEAHKWVQQINLHASQVADTRPVAFCEFSADSEHIVTAGWSGSVAVWKREQ 235

Query:   184 CELVQTFRGHDCNVGAIEFHP---LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH 240
             C     F GH    G   FHP     ++ +  ++ SC+ DG+V LWSL +++P+  LE H
Sbjct:   236 CAQEIKFIGHSSQAGCARFHPGAFTQNDYSSLNVVSCSYDGTVLLWSLSQESPIGELEQH 295

Query:   241 EPFRVSRIKFHPSGRFLGTCCWDHSWRL-D-TPLANL---EGHEPFRVSRIKFHPSGRFL 295
              P RVS++ FHP+G  L T C+D +WR+ D T    L   EGH    V+ + FHP G   
Sbjct:   296 -PQRVSKVAFHPNGHHLATACFDSTWRMYDLTTKKELLYQEGHSK-SVADVAFHPDGSVA 353

Query:   296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR 355
              T   D   R+WD+  G+ ++  +GH K ++ + +  +G  + TG  D   +VWDLR  R
Sbjct:   354 LTGGHDCYGRVWDMRTGRCIMFLDGHTKEIHSVEWMPNGYEMITGSSDNSMKVWDLRMRR 413

Query:   356 CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
                 +  H   V  V     G +L + S D  +K+W
Sbjct:   414 NTYTMPAHTSVVTRVRADAAGQYLVSASFDCTLKMW 449

GO:0008380 "RNA splicing" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43172	PRP4_HUMAN	No assigned EC number	0.5016	0.6157	0.5555	yes	N/A
Q9DAW6	PRP4_MOUSE	No assigned EC number	0.5016	0.6157	0.5566	yes	N/A
Q3MHE2	PRP4_BOVIN	No assigned EC number	0.5016	0.6157	0.5566	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	471
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-56
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-55
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-52
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-24
smart00320	40	smart00320, WD40, WD40 repeats	9e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-08
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-05
smart00500	44	smart00500, SFM, Splicing Factor Motif, present in	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
pfam08799	30	pfam08799, PRP4, pre-mRNA processing factor 4 (PRP	9e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.002
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.002
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  189 bits (481), Expect = 1e-56
 Identities = 87/259 (33%), Positives = 134/259 (51%), Gaps = 12/259 (4%)

Query: 139 LTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVG 198
           L +  +  +  G T P+   + S D  ++A+ S     +LW +   E V+T  GH   V 
Sbjct: 38  LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 199 AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLG 258
           ++ F P         L+S ++D ++K+W ++    L  L GH  + V+ + F P G F+ 
Sbjct: 98  SVAFSPDGR-----ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-VNSVAFSPDGTFVA 151

Query: 259 TCCWDHS---WRLDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
           +   D +   W L T   +A L GH    V+ + F P G  L +   D + +LWDL+ G+
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGE-VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210

Query: 314 EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS 373
            +    GH   V  ++F  DG ++A+G  D   RVWDLRTG C+  L GH  SV S+ +S
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270

Query: 374 PDGYHLATGSEDNAVKIWD 392
           PDG  LA+GS D  ++IWD
Sbjct: 271 PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  186 bits (473), Expect = 2e-55
 Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 21/279 (7%)

Query: 154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
            ++  +FSPD + +AT S  G  K+W +   EL++T +GH   V  +             
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-----DGTY 65

Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----- 268
           LAS + D +++LW L+    +  L GH    VS + F P GR L +   D + ++     
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHT-SYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124

Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
              L  L GH  + V+ + F P G F+ +   D + +LWDL  G+ V    GH   V  +
Sbjct: 125 GKCLTTLRGHTDW-VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV 388
           +F  DG  + +   D   ++WDL TG+C+  L GH   V SV FSPDGY LA+GSED  +
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

Query: 389 KIWDLRKRRLLK---------WCTQLLPNSIGVTSLLTD 418
           ++WDLR    ++               P+   + S   D
Sbjct: 244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  178 bits (453), Expect = 2e-52
 Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 12/223 (5%)

Query: 186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRV 245
           L +T +GH   V  + F P         LA+ + DG++K+W L+    L  L+GH    V
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-----LLATGSGDGTIKVWDLETGELLRTLKGHTGP-V 54

Query: 246 SRIKFHPSGRFLGTCCWDHS---WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCW 300
             +     G +L +   D +   W L+T   +  L GH    VS + F P GR L +   
Sbjct: 55  RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT-SYVSSVAFSPDGRILSSSSR 113

Query: 301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL 360
           D + ++WD+  G+ +    GH   V  ++F  DG+ VA+   D   ++WDLRTG+C+  L
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173

Query: 361 EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT 403
            GH   V SV FSPDG  L + S D  +K+WDL   + L    
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  137 bits (344), Expect = 2e-35
 Identities = 94/262 (35%), Positives = 134/262 (51%), Gaps = 19/262 (7%)

Query: 150 GDTRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
           G +  ++  +FSPD + +A+ S   G  KLW +   + + T  GH   V ++ F P    
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG- 211

Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLAN-LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR 267
                +AS + DG+++LW L     L + L GH    VS   F P G  L +   D + R
Sbjct: 212 ---LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS--SFSPDGSLLASGSSDGTIR 266

Query: 268 L------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG--QEVLHQE 319
           L       + L  L GH    V  + F P G+ L +   D + RLWDL  G     L  +
Sbjct: 267 LWDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 320 GHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
           GH  PV  +SF  DGS++ +GG  D   R+WDLRTG+ +  LEGH  +V SV FSPDG  
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRV 384

Query: 379 LATGSEDNAVKIWDLRKRRLLK 400
           +++GS D  V++WDL    LL+
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLR 406

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  128 bits (321), Expect = 2e-32
 Identities = 103/333 (30%), Positives = 155/333 (46%), Gaps = 18/333 (5%)

Query: 146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTV-PECELVQTFRG-HDCNVGAIEFH 203
               G    I+  +FSPD + + + S  G  KLW +    +L+++  G HD +V  +   
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 204 PLPSEGAVCSLASCAQDGSVKLWSLDKDT-PLANLEGHEPFRVSRIKFHPSGRFL-GTCC 261
               +G    LAS + DG+VKLW L      +  LEGH    V+ + F P G+ L     
Sbjct: 119 S--PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-SVTSLAFSPDGKLLASGSS 175

Query: 262 WDHS---WRLDT--PLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLWDLNQGQEV 315
            D +   W L T  PL+ L GH    VS + F P G   + +   D + RLWDL+ G+ +
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAGHTDP-VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Query: 316 -LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFS 373
                GH   V   SF  DGS++A+G  D   R+WDLR+    +  L GH  SV SV FS
Sbjct: 235 RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 374 PDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP-NSIGVTSLLTDLYIDVLESLNPGIG 432
           PDG  LA+GS D  V++WDL   +LL   T       +   S   D  + V    + G  
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 433 NIISSALKEQVEPIPLLLDIQKLTFKFDSDLHA 465
            +      + ++ +    ++  ++F  D  + +
Sbjct: 354 RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVS 386

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  126 bits (317), Expect = 7e-32
 Identities = 96/268 (35%), Positives = 136/268 (50%), Gaps = 20/268 (7%)

Query: 139 LTSLSIYCSQVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQ-TFRGHDCN 196
           L +     +  G T P+S  +FSPD    +A+ S  G  +LW +   +L++ T  GH  +
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-D 243

Query: 197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD-TPLANLEGHEPFRVSRIKFHPSGR 255
                F P  S      LAS + DG+++LW L    + L  L GH    V  + F P G+
Sbjct: 244 SVVSSFSPDGS-----LLASGSSDGTIRLWDLRSSSSLLRTLSGHS-SSVLSVAFSPDGK 297

Query: 256 FLGTCCWDHS---WRLDTP----LANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLW 307
            L +   D +   W L+T        L+GHE   VS + F P G   +     D + RLW
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV 367
           DL  G+ +   EGH   V  +SF  DG VV++G  D   R+WDL TG  +  L+GH   V
Sbjct: 357 DLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415

Query: 368 FSVDFSPDGYHLATGSEDNAVKIWDLRK 395
            S+DFSPDG  LA+GS DN +++WDL+ 
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (259), Expect = 4e-24
 Identities = 80/237 (33%), Positives = 112/237 (47%), Gaps = 25/237 (10%)

Query: 159 SFSPDSQHVATASWSGLCKLWTVPEC-ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
           SFSPD   +A+ S  G  +LW +     L++T  GH  +V ++ F P         LAS 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-----LLASG 302

Query: 218 AQDGSVKLWSLD--KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----WRLDTP 271
           + DG+V+LW L+  K      L+GHE   VS + F P G  L +   D      W L T 
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ 331
                      V  + F P GR + +   D + RLWDL+ G  + + +GH   V  + F 
Sbjct: 362 KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421

Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV 388
            DG  +A+G  D   R+WDL+T            S+ SV FSPDG  LA+ S D +V
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKT------------SLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 353 TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           +G  +  L+GH   V SV FSPDG +LA+GS+D  +K+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           G+ +  L+GH   V SV FSPDG  LA+GS+D  V++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 9/169 (5%)

Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           +  +    SG  L     D    L DL+         GH   +  ++F  DG ++ +G  
Sbjct: 30  LLSLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSS 85

Query: 343 DAFGRVWDLRTGRCI--MFLEGHLKSVFSVDF-SPDGYHLAT--GSEDNAVKIWDLRKRR 397
           D   ++WDL  G  +       H  SV  +   SPDG  +     S D  VK+WDL    
Sbjct: 86  DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145

Query: 398 LLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPI 446
            L    +    S+   +   D  +    S   G   +      + +  +
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.2 bits (114), Expect = 9e-06
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
             ++    C  S     VA++++ G+ ++W V   +LV   + H+  V +I++    S  
Sbjct: 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDY----SSA 586

Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF-HPSGRFLGTCCWDHS-WR 267
               LAS + DGSVKLWS+++   +  ++      +  ++F   SGR L     DH  + 
Sbjct: 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKA--NICCVQFPSESGRSLAFGSADHKVYY 644

Query: 268 LD-----TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN 310
            D      PL  + GH    VS ++F  S   + +   D++ +LWDL+
Sbjct: 645 YDLRNPKLPLCTMIGHSK-TVSYVRFVDSSTLVSSST-DNTLKLWDLS 690

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD 308
             L  L+GH    V+ + F P G++L +   D + +LWD
Sbjct: 3   ELLKTLKGHT-GPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD 308
             L  L+GH    V+ + F P G  L +   D + R+WD
Sbjct: 2   KLLRTLKGHT-GPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 310 NQGQEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF 368
           N    ++H +GH K V  +SF     +V+A+ G D    VWD+  G+ +  ++ H   + 
Sbjct: 113 NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172

Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRK 395
           S++++ DG  L T S+D  + I D R 
Sbjct: 173 SLEWNLDGSLLCTTSKDKKLNIIDPRD 199

Length = 493

>gnl|CDD|128776 smart00500, SFM, Splicing Factor Motif, present in Prp18 and Pr04

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 82  TDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAK 116
             D++V   LR+LGEPI LFGE     + ++RL +
Sbjct: 1   LPDSEVIRRLRELGEPITLFGE--DDQERRQRLRQ 33

Length = 44

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD 350
           G+ +   +GH  PV  ++F  DG+++A+G  D   RVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|204069 pfam08799, PRP4, pre-mRNA processing factor 4 (PRP4) like

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 87  VKLNLRQLGEPICLFGE 103
           V   LR+LGEPI LFGE
Sbjct: 1   VIRRLRELGEPITLFGE 17

This small domain is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. Length = 30

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 311 QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD 350
            G+ +   +GH  PV  ++F  DG  +A+G  D   ++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLW 179
           G T P++  +FSPD   +A+ S  G  ++W
Sbjct: 9   GHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 18/150 (12%)

Query: 149 VGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPECELVQT-------FRGHDCNVGAI 200
           +G   PI   +F+P D Q + TAS  G    W +PE  L Q         +GH   VG +
Sbjct: 72  LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV 131

Query: 201 EFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC 260
            FHP     A+  LAS   D  V +W +++   +  ++ H    ++ ++++  G  L T 
Sbjct: 132 SFHP----SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTT 186

Query: 261 CWDHSWRLDTP-----LANLEGHEPFRVSR 285
             D    +  P     ++++E H   +  R
Sbjct: 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLW 179
           G T P++  +FSPD +++A+ S  G  KLW
Sbjct: 10  GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS 227
           EL++T +GH   V ++ F P         LAS + DG++KLW 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKY-----LASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 184 CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS 227
            +L++T +GH   V ++ F P  +      LAS + DG+V++W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNL-----LASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD-GSVVATGGLDAFGRVWDLRTGR---C 356
           D S +LW +NQG  +   +     + C+ F  + G  +A G  D     +DLR  +   C
Sbjct: 597 DGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC 655

Query: 357 IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL 393
            M   GH K+V  V F  D   L + S DN +K+WDL
Sbjct: 656 TMI--GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF-SPDGYHLATGSEDNAVKIWDL 393
           S VA+   +   +VWD+   + +  ++ H K V+S+D+ S D   LA+GS+D +VK+W +
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605

Query: 394 RK 395
            +
Sbjct: 606 NQ 607

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSF-QGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH 363
           ++WD+ + Q V   + H K V+ + +   D +++A+G  D   ++W +  G  I    G 
Sbjct: 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI----GT 613

Query: 364 LKS---VFSVDFSPD-GYHLATGSEDNAVKIWDLRKRRLLKWCTQL 405
           +K+   +  V F  + G  LA GS D+ V  +DLR  + L  CT +
Sbjct: 614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMI 658

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	471
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0263|consensus	707		100.0
KOG0273|consensus	524		100.0
KOG0286|consensus	343		100.0
KOG0295|consensus	406		100.0
KOG0284|consensus	464		100.0
KOG0279|consensus	315		100.0
KOG0291|consensus	893		100.0
KOG0315|consensus	311		100.0
KOG0286|consensus	343		100.0
KOG0276|consensus	794		100.0
KOG0265|consensus	338		100.0
KOG0295|consensus	406		100.0
KOG0285|consensus	460		100.0
KOG0318|consensus	603		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263|consensus	707		100.0
KOG0291|consensus	893		100.0
KOG0282|consensus	503		100.0
KOG0273|consensus	524		100.0
KOG0293|consensus	519		100.0
KOG0316|consensus	307		100.0
KOG0306|consensus	888		100.0
KOG0318|consensus	603		100.0
KOG0284|consensus	464		100.0
KOG0643|consensus	327		100.0
KOG0645|consensus	312		100.0
KOG0266|consensus	456		100.0
KOG0281|consensus	499		100.0
KOG1407|consensus	313		100.0
KOG0315|consensus	311		100.0
KOG0266|consensus	456		100.0
KOG0319|consensus	775		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0296|consensus	399		100.0
KOG0313|consensus	423		100.0
KOG0319|consensus	775		100.0
KOG0265|consensus	338		100.0
KOG0292|consensus	1202		100.0
KOG0283|consensus	712		99.98
KOG0645|consensus	312		99.98
KOG0275|consensus	508		99.98
KOG0296|consensus	399		99.98
KOG0299|consensus	479		99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0281|consensus	499		99.97
KOG0276|consensus	794		99.97
KOG0640|consensus	430		99.97
KOG0292|consensus	1202		99.97
KOG0278|consensus	334		99.97
PTZ00420	568	coronin; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0289|consensus	506		99.97
KOG0285|consensus	460		99.97
KOG0274|consensus	537		99.96
KOG1446|consensus	311		99.96
KOG0305|consensus	484		99.96
KOG0277|consensus	311		99.96
KOG0306|consensus	888		99.96
KOG0288|consensus	459		99.96
KOG0313|consensus	423		99.96
KOG0294|consensus	362		99.96
KOG1036|consensus	323		99.96
KOG0973|consensus	942		99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0772|consensus	641		99.96
KOG0288|consensus	459		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG2096|consensus	420		99.96
KOG1407|consensus	313		99.96
KOG0268|consensus	433		99.96
KOG0973|consensus	942		99.96
KOG0316|consensus	307		99.96
KOG0274|consensus	537		99.96
KOG0310|consensus	487		99.95
KOG0310|consensus	487		99.95
KOG0282|consensus	503		99.95
KOG0643|consensus	327		99.95
KOG0301|consensus	745		99.95
KOG0300|consensus	481		99.95
KOG0277|consensus	311		99.95
KOG0308|consensus	735		99.95
KOG0647|consensus	347		99.95
KOG1539|consensus	910		99.95
KOG0305|consensus	484		99.95
KOG0267|consensus	825		99.95
KOG0289|consensus	506		99.95
KOG1332|consensus	299		99.94
KOG0275|consensus	508		99.94
KOG0641|consensus	350		99.94
KOG0646|consensus	476		99.94
KOG2055|consensus	514		99.94
KOG0641|consensus	350		99.94
KOG1446|consensus	311		99.94
KOG0293|consensus	519		99.94
KOG0264|consensus	422		99.94
KOG0299|consensus	479		99.94
KOG0264|consensus	422		99.93
KOG1273|consensus	405		99.93
KOG1274|consensus	933		99.93
KOG0640|consensus	430		99.93
KOG0278|consensus	334		99.93
KOG2048|consensus	691		99.93
KOG1408|consensus	1080		99.93
KOG2445|consensus	361		99.93
KOG0301|consensus	745		99.93
KOG0772|consensus	641		99.93
KOG0269|consensus	839		99.93
KOG0283|consensus	712		99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG4283|consensus	397		99.93
KOG0294|consensus	362		99.92
KOG0302|consensus	440		99.92
KOG0267|consensus	825		99.92
KOG0647|consensus	347		99.92
KOG0268|consensus	433		99.92
KOG1408|consensus	1080		99.92
KOG1063|consensus	764		99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2106|consensus	626		99.91
KOG0308|consensus	735		99.91
KOG1063|consensus	764		99.91
KOG0270|consensus	463		99.91
KOG1445|consensus	1012		99.91
KOG0300|consensus	481		99.91
KOG0639|consensus	705		99.9
KOG4328|consensus	498		99.9
KOG0650|consensus	733		99.9
KOG1036|consensus	323		99.89
KOG2919|consensus	406		99.89
KOG0639|consensus	705		99.89
KOG1539|consensus	910		99.89
KOG2055|consensus	514		99.89
KOG2106|consensus	626		99.89
KOG0269|consensus	839		99.88
KOG1332|consensus	299		99.88
KOG0321|consensus	720		99.87
KOG0302|consensus	440		99.87
KOG2048|consensus	691		99.87
KOG0646|consensus	476		99.87
KOG4378|consensus	673		99.87
KOG0642|consensus	577		99.86
KOG1538|consensus	1081		99.86
KOG0307|consensus	1049		99.86
KOG4328|consensus	498		99.85
KOG0303|consensus	472		99.85
KOG2096|consensus	420		99.85
KOG0322|consensus	323		99.85
KOG1274|consensus	933		99.84
KOG1273|consensus	405		99.84
KOG0290|consensus	364		99.84
KOG1034|consensus	385		99.83
KOG4283|consensus	397		99.82
KOG1007|consensus	370		99.82
KOG1587|consensus	555		99.82
KOG0321|consensus	720		99.82
KOG0644|consensus	1113		99.81
KOG2445|consensus	361		99.81
KOG0771|consensus	398		99.81
KOG1009|consensus	434		99.81
KOG0270|consensus	463		99.8
KOG0303|consensus	472		99.8
KOG1963|consensus	792		99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1034|consensus	385		99.8
KOG1188|consensus	376		99.8
KOG0649|consensus	325		99.79
KOG4378|consensus	673		99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG4227|consensus	609		99.78
KOG1272|consensus	545		99.78
KOG1963|consensus	792		99.78
KOG1587|consensus	555		99.78
KOG1524|consensus	737		99.77
KOG2919|consensus	406		99.77
KOG0307|consensus	1049		99.77
KOG1310|consensus	758		99.76
KOG2394|consensus	636		99.76
KOG0642|consensus	577		99.76
KOG4497|consensus	447		99.75
KOG0650|consensus	733		99.75
KOG1523|consensus	361		99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG1009|consensus	434		99.74
KOG2110|consensus	391		99.73
KOG1007|consensus	370		99.73
KOG1445|consensus	1012		99.73
KOG1524|consensus	737		99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG3881|consensus	412		99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG2139|consensus	445		99.71
KOG1517|consensus	1387		99.69
KOG0290|consensus	364		99.69
KOG2321|consensus	703		99.67
KOG2111|consensus	346		99.67
KOG1523|consensus	361		99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG1334|consensus	559		99.66
KOG1354|consensus	433		99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
KOG1517|consensus	1387		99.65
KOG2110|consensus	391		99.64
KOG1188|consensus	376		99.63
KOG0771|consensus	398		99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG2321|consensus	703		99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG2394|consensus	636		99.6
KOG1538|consensus	1081		99.59
KOG0644|consensus	1113		99.59
KOG1272|consensus	545		99.59
KOG0322|consensus	323		99.59
KOG0649|consensus	325		99.59
KOG1240|consensus	1431		99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG4497|consensus	447		99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.56
KOG2139|consensus	445		99.55
KOG1310|consensus	758		99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
KOG1240|consensus	1431		99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.5
KOG4227|consensus	609		99.5
KOG2111|consensus	346		99.5
KOG4547|consensus	541		99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
KOG0974|consensus	967		99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
KOG2315|consensus	566		99.43
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
KOG3881|consensus	412		99.4
KOG2314|consensus	698		99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
KOG1832|consensus	1516		99.37
KOG0280|consensus	339		99.37
PRK00178	430	tolB translocation protein TolB; Provisional	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
KOG1409|consensus	404		99.32
KOG1064|consensus	2439		99.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.32
KOG1064|consensus	2439		99.31
KOG4190|consensus	1034		99.3
KOG1409|consensus	404		99.3
KOG1334|consensus	559		99.29
KOG0280|consensus	339		99.29
KOG1912|consensus	1062		99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG0974|consensus	967		99.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.2
KOG2041|consensus	1189		99.18
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.16
KOG4547|consensus	541		99.16
KOG4532|consensus	344		99.15
KOG1354|consensus	433		99.13
KOG3914|consensus	390		99.12
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
KOG2314|consensus	698		99.11
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.09
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
KOG2695|consensus	425		99.04
KOG2041|consensus	1189		99.04
KOG2315|consensus	566		99.03
KOG0309|consensus	1081		99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.01
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
KOG2114|consensus	933		98.98
KOG4532|consensus	344		98.97
KOG3914|consensus	390		98.96
KOG4190|consensus	1034		98.95
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.89
KOG1912|consensus	1062		98.88
KOG1645|consensus	463		98.84
KOG4714|consensus	319		98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.81
KOG0309|consensus	1081		98.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.78
KOG0882|consensus	558		98.75
KOG4714|consensus	319		98.72
KOG2695|consensus	425		98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.66
KOG2066|consensus	846		98.66
KOG0882|consensus	558		98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.64
KOG1275|consensus	1118		98.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.62
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.56
KOG1275|consensus	1118		98.55
KOG1920|consensus	1265		98.53
KOG2066|consensus	846		98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.47
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.38
KOG2114|consensus	933		98.33
KOG4649|consensus	354		98.31
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.3
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PRK02888	635	nitrous-oxide reductase; Validated	98.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
KOG3621|consensus	726		98.19
KOG4649|consensus	354		98.18
KOG1008|consensus	783		98.18
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.17
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.17
KOG3617|consensus	1416		98.14
KOG1832|consensus	1516		98.13
KOG1645|consensus	463		98.11
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.06
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.03
KOG1920|consensus	1265		98.01
COG3391	381	Uncharacterized conserved protein [Function unknow	97.99
COG3391	381	Uncharacterized conserved protein [Function unknow	97.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.98
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.91
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.89
KOG4640|consensus	665		97.89
KOG3617|consensus	1416		97.88
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.85
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.84
KOG3621|consensus	726		97.81
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.8
KOG4640|consensus	665		97.8
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.76
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.68
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.67
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.54
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.5
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.4
PRK13616	591	lipoprotein LpqB; Provisional	97.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.38
KOG1008|consensus	783		97.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.36
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.35
KOG4441|consensus	571		97.34
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.31
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.26
PHA02713	557	hypothetical protein; Provisional	97.23
KOG2395|consensus	644		97.21
KOG2079|consensus	1206		97.18
KOG2444|consensus	238		97.18
PRK10115	686	protease 2; Provisional	97.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.13
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.09
smart00500	44	SFM Splicing Factor Motif, present in Prp18 and Pr	97.05
PRK13616	591	lipoprotein LpqB; Provisional	97.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.0
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.94
KOG4499|consensus	310		96.89
KOG2395|consensus	644		96.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.85
PF08799	30	PRP4: pre-mRNA processing factor 4 (PRP4) like; In	96.84
KOG2079|consensus	1206		96.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.7
PHA03098	534	kelch-like protein; Provisional	96.66
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.6
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.52
KOG4499|consensus	310		96.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.4
KOG2444|consensus	238		96.38
PRK10115	686	protease 2; Provisional	96.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.19
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.12
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.11
PHA02790	480	Kelch-like protein; Provisional	95.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.84
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.69
PRK13684	334	Ycf48-like protein; Provisional	95.65
PHA02713	557	hypothetical protein; Provisional	95.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.57
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.5
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.37
KOG3630|consensus	1405		95.28
KOG3630|consensus	1405		95.24
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.16
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.14
KOG1916|consensus	1283		94.97
KOG1897|consensus	1096		94.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.88
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.55
KOG4441|consensus	571		94.46
KOG2280|consensus	829		94.37
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.25
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.18
KOG1897|consensus	1096		94.02
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.89
KOG1916|consensus	1283		93.87
COG5167	776	VID27 Protein involved in vacuole import and degra	93.79
KOG1898|consensus	1205		93.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.69
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.59
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.44
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.41
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.38
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.29
KOG1900|consensus	1311		93.1
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.01
KOG4460|consensus	741		92.92
KOG2377|consensus	657		92.86
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.81
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.79
PHA03098	534	kelch-like protein; Provisional	92.68
COG5167	776	VID27 Protein involved in vacuole import and degra	92.48
PRK13684	334	Ycf48-like protein; Provisional	92.43
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.22
KOG2247|consensus	615		92.11
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.97
KOG1983|consensus	993		91.6
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	91.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.19
KOG2247|consensus	615		91.07
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.04
KOG4659|consensus	1899		91.0
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	90.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.39
PHA02790	480	Kelch-like protein; Provisional	90.2
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	89.99
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	89.87
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.38
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.28
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.25
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.18
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.1
KOG2063|consensus	877		89.06
KOG4460|consensus	741		88.9
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.1
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.02
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.0
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.86
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.84
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.45
COG3292	671	Predicted periplasmic ligand-binding sensor domain	87.24
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.15
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	86.6
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.6
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.41
KOG2377|consensus	657		86.27
KOG1900|consensus	1311		86.24
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.1
KOG3616|consensus	1636		85.83
KOG2280|consensus	829		85.34
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.52
PLN02153	341	epithiospecifier protein	83.9
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.16
PLN02193	470	nitrile-specifier protein	83.12
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.12
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.35
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.24
COG1770	682	PtrB Protease II [Amino acid transport and metabol	82.2
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.03
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.83
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	81.52
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	80.45

>KOG0272|consensus

Probab=100.00  E-value=6.2e-61  Score=424.70  Aligned_cols=368  Identities=46%  Similarity=0.751  Sum_probs=336.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHhCCCcccccc----------------------------
Q psy11350         52 MEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGE----------------------------  103 (471)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~----------------------------  103 (471)
                      +|.+....+++.+++++++++++++.+.+|++|.+||..|+.+++|+++|+|                            
T Consensus        18 ~e~~~q~~~~~a~~l~e~e~r~ra~~l~vpteD~evr~~Lr~l~ePi~~fgE~~~~RR~RL~~lL~~~~~~l~~~~~~d~   97 (459)
T KOG0272|consen   18 SEGSTQNERRQAALLAEFERRRRARLLKVPTEDSEVRSPLRALKEPITLFGEDALARRQRLRELLSVASEDLLKDKLEDE   97 (459)
T ss_pred             hhhhhhhHHHHHHHHHHhhHHhhHHHhcCCccHHHHHHHHHHhCCCCcccCCCHHHHHHHHHHHHHHhhHhhhhcccccc
Confidence            4444455678889999999999999999999999999999999999999999                            


Q ss_pred             -----------------------------cccHHHHHHHHHHHHhhcCCCcchhhhhhHHHHhhccccceeeeeecCCcC
Q psy11350        104 -----------------------------EYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRP  154 (471)
Q Consensus       104 -----------------------------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~  154 (471)
                                                   .||+++++.|+..+++....|...+....+...+++..+.+.+++.|.++|
T Consensus        98 ~~k~~~e~~~~~~y~~gp~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rP  177 (459)
T KOG0272|consen   98 VNKKEDEEDESTWYHEGPVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRP  177 (459)
T ss_pred             ccchhhhhcccceeccCCHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCc
Confidence                                         899999999999999999999998888888999999999999999999999


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCC-CCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLP-SEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      |..+.||+|++.||||+++|.++||+.+++..+.+|.+|...|.++.|+|.. ..    .++||+.||++++|++.+..+
T Consensus       178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~----~lat~s~Dgtvklw~~~~e~~  253 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDL----NLATASADGTVKLWKLSQETP  253 (459)
T ss_pred             ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcc----ceeeeccCCceeeeccCCCcc
Confidence            9999999999999999999999999999999999999999999999999983 32    599999999999999999999


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-----ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      +..+.+|.. .|..++|+|+|+++++++.|.+|++|...     ....+| ...|.+++|+|||..+++|+.|..-+|||
T Consensus       254 l~~l~gH~~-RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  254 LQDLEGHLA-RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             hhhhhcchh-hheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCCceeeccCccchhheee
Confidence            999999986 99999999999999999999999887543     345677 55899999999999999999999999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC-CCCEEEEEeCCCc
Q psy11350        309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNA  387 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~  387 (471)
                      ++++.++..+.+|..+|.+++|+|+|..|+||+.|++++|||++..+++.++.+|..-|+.+.|+| .|++|+|++.|++
T Consensus       332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t  411 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT  411 (459)
T ss_pred             cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999 7899999999999


Q ss_pred             EEEEECCCccchheecccCC---------Cccceeeccccceeeeec
Q psy11350        388 VKIWDLRKRRLLKWCTQLLP---------NSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       388 i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~~  425 (471)
                      ++||..++..+++++..+..         ..-.+.+.+.|..+.+|.
T Consensus       412 ~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  412 VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999998876644         333455555555555553

>KOG0271|consensus

Probab=100.00  E-value=4.6e-43  Score=307.36  Aligned_cols=311  Identities=23%  Similarity=0.333  Sum_probs=258.1

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      .....++.||..+|.|++|+|+|.+|++|+.|.++++||+.+..+..+.++|...|.|++|+|++.     .|++|+.||
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-----~iASG~~dg  179 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-----KIASGSKDG  179 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-----hhhccccCC
Confidence            344556789999999999999999999999999999999999999999999999999999999999     699999999


Q ss_pred             cEEEEeCCCCccee-eecCCCCcceEEEEECC-----CCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECC
Q psy11350        222 SVKLWSLDKDTPLA-NLEGHEPFRVSRIKFHP-----SGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       222 ~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~  290 (471)
                      +|++||..+|+++. .+.+|.. .|++++|.|     .++++++++.||.+++|.     .+..+.+| ..+|+|+.|--
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K-~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VTCvrwGG  257 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKK-WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVTCVRWGG  257 (480)
T ss_pred             eEEEecCCCCCcccccccCccc-ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceEEEEEcC
Confidence            99999999998765 5777777 999999965     678999999999987764     44567788 66899999975


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEe-----------CCCC------------------------
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ-----------GDGS------------------------  335 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------~d~~------------------------  335 (471)
                      + .+|++|+.|++|++|+...|.+.+.+.+|...|+.++.+           |.+.                        
T Consensus       258 ~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  258 E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence            4 489999999999999999999999999999999999877           2233                        


Q ss_pred             -EEEEEeCCCeEEEEeCCC-CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC------
Q psy11350        336 -VVATGGLDAFGRVWDLRT-GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP------  407 (471)
Q Consensus       336 -~l~t~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------  407 (471)
                       .|++|+.|.++.+|+-.. .+++..+.+|..-|+.+.||||++++|++|-|..|++||.++|+.+.+|..+..      
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA  416 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence             499999999999998654 458889999999999999999999999999999999999999999998875533      


Q ss_pred             ---CccceeeccccceeeeecccCCCcccccchhhhcccccce-eeecccceeeeecCCeEEEeecCC
Q psy11350        408 ---NSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIP-LLLDIQKLTFKFDSDLHAMVLNQK  471 (471)
Q Consensus       408 ---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~fs~dg~~lA~~~~~~  471 (471)
                         ..-.+++.+.|..+.+|+......           ...++ ....+-.+.++|||+..|-...+|
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl-----------~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKL-----------KQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeee-----------cccCCCCCceEEEEEecCCCceeecCCCce
Confidence               222444455555555555433321           22223 233456778999999887665543

>KOG0271|consensus

Probab=100.00  E-value=5.7e-42  Score=300.51  Aligned_cols=274  Identities=26%  Similarity=0.457  Sum_probs=238.2

Q ss_pred             cchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE-EEeecCCCCEEEEEEe
Q psy11350        125 EATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELV-QTFRGHDCNVGAIEFH  203 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~  203 (471)
                      ..+.+.|.|++....+    ..+.+||...|.|++|+|||+.||+|+.||+|++||.++|+.+ ..+.+|...|++++|.
T Consensus       134 sGD~TvR~WD~~TeTp----~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawe  209 (480)
T KOG0271|consen  134 SGDTTVRLWDLDTETP----LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWE  209 (480)
T ss_pred             CCCceEEeeccCCCCc----ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeec
Confidence            3455667777654333    3467899999999999999999999999999999999988765 5789999999999999


Q ss_pred             eCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCC
Q psy11350        204 PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGH  278 (471)
Q Consensus       204 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~  278 (471)
                      |-.......+|++++.||+|+|||+..+.++..+.+|.. +|+|+.|--+ .+|++++.|+++++|..     ...+.+|
T Consensus       210 p~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGH  287 (480)
T KOG0271|consen  210 PLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGH  287 (480)
T ss_pred             ccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhccc
Confidence            865443334799999999999999999999999999998 9999999754 48899999999888653     4467777


Q ss_pred             CCcceEEEEEC-----------CCCC-------------------------EEEEEecCCeEEEEECCCC-cEEEEeeCC
Q psy11350        279 EPFRVSRIKFH-----------PSGR-------------------------FLGTCCWDHSWRLWDLNQG-QEVLHQEGH  321 (471)
Q Consensus       279 ~~~~v~~l~~~-----------~~~~-------------------------~l~~~~~dg~i~iwd~~~~-~~~~~~~~~  321 (471)
                       ...|+.++.+           |.++                         .|++|+.|.++.+|+.... +++....+|
T Consensus       288 -ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH  366 (480)
T KOG0271|consen  288 -AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH  366 (480)
T ss_pred             -chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence             5578888766           3333                         4999999999999997654 578889999


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhe
Q psy11350        322 GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       322 ~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      ..-|+.+.||||++++++++.|..|++||-++|+.+.+|.||.++|+.++|+.|.++|++||.|.++++||++++++..-
T Consensus       367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D  446 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD  446 (480)
T ss_pred             hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eccc
Q psy11350        402 CTQL  405 (471)
Q Consensus       402 ~~~~  405 (471)
                      ++.+
T Consensus       447 LpGh  450 (480)
T KOG0271|consen  447 LPGH  450 (480)
T ss_pred             CCCC
Confidence            7754

>KOG0272|consensus

Probab=100.00  E-value=1.2e-41  Score=302.22  Aligned_cols=246  Identities=30%  Similarity=0.502  Sum_probs=231.2

Q ss_pred             cccceeeeeecCCcCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPD--SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      +.++..+.+.||+..|.++.|+|.  +..||||+.||++++|++.+..++..+.+|...|..++|+|+|.     +|+|+
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~-----~L~Ta  279 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGK-----FLGTA  279 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCc-----eeeec
Confidence            345788899999999999999997  56899999999999999999899999999999999999999999     89999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe---EEecc--ccccccCCCCcceEEEEECCCC
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDT--PLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~---~~~~~--~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      +.|.+-++||+.++..+....+|.. .|.+++|.|||..+++|+.|..   |++.+  .+..+.+| ..+|.+|+|+|+|
T Consensus       280 sfD~tWRlWD~~tk~ElL~QEGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsPNG  357 (459)
T KOG0272|consen  280 SFDSTWRLWDLETKSELLLQEGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSPNG  357 (459)
T ss_pred             ccccchhhcccccchhhHhhccccc-ccceeEecCCCceeeccCccchhheeecccCcEEEEeccc-ccceeeEeECCCc
Confidence            9999999999999999999999988 9999999999999999999987   55543  45567887 5589999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      ..||+|+.|++++|||++..+.+.++.+|..-|+.+.|+| .|.+|+|++.|++++||..+++.+++++.||.+.|.+++
T Consensus       358 y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D  437 (459)
T KOG0272|consen  358 YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD  437 (459)
T ss_pred             eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE
Confidence            9999999999999999999999999999999999999999 788999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEE
Q psy11350        372 FSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      ++||+.+++|++.|.++++|.
T Consensus       438 is~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 ISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eccCCceEEEeccCceeeecc
Confidence            999999999999999999995

>KOG0279|consensus

Probab=100.00  E-value=2e-38  Score=267.71  Aligned_cols=254  Identities=24%  Similarity=0.410  Sum_probs=227.9

Q ss_pred             cceeeeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCC-----CCceEEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVP-----ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      +.+..++.||++.|+.++..+. ...|++++.|.++.+|++.     .|.+++.+.+|...|..+..+++++     +.+
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-----~al   79 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-----FAL   79 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-----eEE
Confidence            4456788999999999999987 4678899999999999874     4778999999999999999999999     799


Q ss_pred             EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc----cccCCC-CcceEEEEECC
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA----NLEGHE-PFRVSRIKFHP  290 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~----~~~~~~-~~~v~~l~~~~  290 (471)
                      +++.|+++++||+.+++....|.+|.. .|.+++|++|.+.|++|+.|.++.+|....    ++.... ...|.|+.|+|
T Consensus        80 S~swD~~lrlWDl~~g~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   80 SASWDGTLRLWDLATGESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             eccccceEEEEEecCCcEEEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence            999999999999999999999999998 899999999999999999999988875433    233332 56899999999


Q ss_pred             C--CCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE
Q psy11350        291 S--GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF  368 (471)
Q Consensus       291 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  368 (471)
                      +  ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+.++. |...|.
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~  237 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVN  237 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEe
Confidence            7  6799999999999999999999999999999999999999999999999999999999999999988876 789999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +++|+|+...|+.+. +..|+|||+.++.++..+.
T Consensus       238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELK  271 (315)
T ss_pred             eEEecCCceeEeecc-CCceEEEeccchhhhhhcc
Confidence            999999977666654 5569999999999988765

>KOG0263|consensus

Probab=100.00  E-value=1.7e-39  Score=310.02  Aligned_cols=241  Identities=34%  Similarity=0.588  Sum_probs=222.6

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-------------------------------ceEEEeecCCCCEEEE
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPEC-------------------------------ELVQTFRGHDCNVGAI  200 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~-------------------------------~~~~~~~~h~~~v~~l  200 (471)
                      ...++|+.|++|+++||.|..|..|++|.+...                               ....++.+|.++|...
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            457999999999999999999999999987521                               1234577999999999


Q ss_pred             EEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccc
Q psy11350        201 EFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANL  275 (471)
Q Consensus       201 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~  275 (471)
                      .|+|+..     +|++|+.|+++++|.+.+..++-.+++|.. +|+++.|+|.|-||++++.|++.++|.     +.+.+
T Consensus       458 sFsPd~r-----fLlScSED~svRLWsl~t~s~~V~y~GH~~-PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  458 SFSPDRR-----FLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-PVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             eeccccc-----ceeeccCCcceeeeecccceeEEEecCCCc-ceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            9999998     799999999999999999999999998887 999999999999999999999977764     56677


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                      .+| -..|.|+.|+|+.+|+++||.|.+|++||+.+|..++.+.||.++|++++|||+|++|++|+.||.|.+||+.+++
T Consensus       532 agh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  532 AGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             ccc-ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence            888 4579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        356 CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      .+..+.+|.+.|.++.|+.+|..||+||.|++|++||+......
T Consensus       611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  611 LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999999999999999999999999999999999765443

>KOG0273|consensus

Probab=100.00  E-value=9.1e-38  Score=281.10  Aligned_cols=244  Identities=25%  Similarity=0.494  Sum_probs=221.3

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      .+..|++++|+.+|..||+|+.||.++||+. +|..+.++..|.++|.++.|+..+.     +|++++.||++.+||..+
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~-----yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT-----YILSGGVDGTTILWDAHT  307 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC-----EEEeccCCccEEEEeccC
Confidence            4578999999999999999999999999994 6888999999999999999999998     899999999999999999


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-----ccccccccCCCCcceEEEEECCCCCEEEEEecCCeEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR  305 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  305 (471)
                      +.....+..+.. +..++.|-.+ ..|++++.|+.+.+     ..|..++.+| .++|.++.|+|.+.+|++++.|++++
T Consensus       308 g~~~q~f~~~s~-~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH-~g~V~alk~n~tg~LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  308 GTVKQQFEFHSA-PALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGH-HGEVNALKWNPTGSLLASCSDDGTLK  384 (524)
T ss_pred             ceEEEeeeeccC-CccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecc-cCceEEEEECCCCceEEEecCCCeeE
Confidence            999888888775 4456667544 45777888887655     5678889997 66899999999999999999999999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEeCCC---------CEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDG---------SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~---------~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      ||.+........+..|...|+.+.|+|+|         ..+++++.|++|++||+..+.++++|..|..+|++++|+|+|
T Consensus       385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g  464 (524)
T KOG0273|consen  385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG  464 (524)
T ss_pred             eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence            99999999999999999999999999964         479999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheec
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|+|+|+.||.|.+|+++++++++...
T Consensus       465 ~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  465 RYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             cEEEecCCCCeeEeccccchheeEeec
Confidence            999999999999999999999887654

>KOG0286|consensus

Probab=100.00  E-value=1.6e-36  Score=257.80  Aligned_cols=254  Identities=24%  Similarity=0.336  Sum_probs=226.5

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .....++||.+.|.++.|++|+++|++++.||.+.|||.-+...++.+......|..++|+|.++     +++.|+.|+.
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~-----~VAcGGLdN~  120 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN-----FVACGGLDNK  120 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC-----eEEecCcCce
Confidence            34467889999999999999999999999999999999999999999988899999999999998     7999999999


Q ss_pred             EEEEeCCCC------cceeeecCCCCcceEEEEECCCCCEEEEEeCCCe---EEeccc--cccccCCCCcceEEEEECC-
Q psy11350        223 VKLWSLDKD------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDTP--LANLEGHEPFRVSRIKFHP-  290 (471)
Q Consensus       223 i~iwd~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~---~~~~~~--~~~~~~~~~~~v~~l~~~~-  290 (471)
                      ..||++.+.      .....+.+|.. .+.++.|.+ ...|++++.|.+   |++.+.  ...+.+| .+.|.++.++| 
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtg-ylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH-~gDV~slsl~p~  197 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTG-YLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGH-TGDVMSLSLSPS  197 (343)
T ss_pred             eEEEecccccccccceeeeeecCccc-eeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCC-cccEEEEecCCC
Confidence            999999754      23455778877 899999988 567788888887   666443  4567788 66899999999 


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc--cCcCEE
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG--HLKSVF  368 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~  368 (471)
                      +++.|++|+.|++.++||++.+.+++.|.+|...|++++|.|+|.-+++|+.|++.++||++..+.+..+..  -..+|+
T Consensus       198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  198 DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT  277 (343)
T ss_pred             CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence            999999999999999999999999999999999999999999999999999999999999999988887763  235799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +++||..|++|++|..|.++.+||.-+++.+-.+..
T Consensus       278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G  313 (343)
T KOG0286|consen  278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG  313 (343)
T ss_pred             eEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence            999999999999999999999999998888776653

>KOG0295|consensus

Probab=100.00  E-value=5.3e-37  Score=267.94  Aligned_cols=260  Identities=27%  Similarity=0.492  Sum_probs=239.1

Q ss_pred             hhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        137 KHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       137 ~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      .+.+++++...+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|...|..|+|+..|.     ++++
T Consensus        93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk-----~l~t  167 (406)
T KOG0295|consen   93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGK-----YLAT  167 (406)
T ss_pred             hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCcc-----EEEe
Confidence            36667777778889999999999999999999999999999999999999999999999999999999998     8999


Q ss_pred             EeCCCcEEEEeCCC-CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECC
Q psy11350        217 CAQDGSVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       217 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~  290 (471)
                      ++.|-.+++||..+ .++++...+|.. .|.++.|-|.|.+|++++.|.++..|.     .+.++.+| ...|..+..+.
T Consensus       168 cSsDl~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~  245 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQ  245 (406)
T ss_pred             cCCccchhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecC
Confidence            99999999999876 467777777776 899999999999999999999976653     45677888 44899999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCC---------------CCEEEEEeCCCeEEEEeCCCCe
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD---------------GSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d---------------~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                      ||..+++++.|.+|++|-+.++++...+..|..+|-+++|-|.               +.++++++.|++|++||+.++.
T Consensus       246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~  325 (406)
T KOG0295|consen  246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM  325 (406)
T ss_pred             CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence            9999999999999999999999998999999999999999663               2589999999999999999999


Q ss_pred             eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        356 CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++.++.+|...|..++|+|.|+||+++.+|+++++||++++++++++.
T Consensus       326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            999999999999999999999999999999999999999999999887

>KOG0284|consensus

Probab=100.00  E-value=2.6e-37  Score=273.52  Aligned_cols=247  Identities=22%  Similarity=0.401  Sum_probs=222.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .-..+|..+.|.|+|+.|++|+..|.+.+|+..+......++.|..+|.++.|++++.     .++||+.+|.|++|+..
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~-----wmiSgD~gG~iKyWqpn  168 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT-----WMISGDKGGMIKYWQPN  168 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC-----EEEEcCCCceEEecccc
Confidence            3456899999999999999999999999999866665566779999999999999998     79999999999999974


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                       ...++.+..+....|.+++|+|+...|++++.|+++.+|..     ...+.+| ...|.+++|+|....+++++.|..|
T Consensus       169 -mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksvdWHP~kgLiasgskDnlV  246 (464)
T KOG0284|consen  169 -MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSVDWHPTKGLIASGSKDNLV  246 (464)
T ss_pred             -hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCcceeccCCccceeEEccCCcee
Confidence             45566666776569999999999999999999999888643     3456777 6689999999999999999999999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC-CCCEEEEEe
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGS  383 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s  383 (471)
                      ++||.+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.++++|...|+++.|+| ...+|.+|+
T Consensus       247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg  326 (464)
T KOG0284|consen  247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG  326 (464)
T ss_pred             EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 667899999


Q ss_pred             CCCcEEEEECCCccchheec
Q psy11350        384 EDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~  403 (471)
                      .||.|..|.+...+++..+.
T Consensus       327 ~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  327 SDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             CCCceEEEeccccccccCCC
Confidence            99999999998666665444

>KOG0279|consensus

Probab=100.00  E-value=2.7e-35  Score=248.79  Aligned_cols=242  Identities=23%  Similarity=0.391  Sum_probs=207.3

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...+.||+..|+.+..++||++.+++++|+++++||+.+++..+.|.+|...|.+++|+|++.     .+++|+.|.+|+
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-----qivSGSrDkTik  130 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-----QIVSGSRDKTIK  130 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-----eeecCCCcceee
Confidence            456789999999999999999999999999999999999999999999999999999999998     699999999999


Q ss_pred             EEeCCCCcceeeecCCC-CcceEEEEECCC--CCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEE
Q psy11350        225 LWSLDKDTPLANLEGHE-PFRVSRIKFHPS--GRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      +|++..+ +..++.... ..-|.++.|+|+  ..+|++++.|+++++|..     ...+.+| ...++.++++|||...+
T Consensus       131 lwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  131 LWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             eeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEEEEECCCCCEEe
Confidence            9998544 444444332 448999999999  789999999999877653     3345666 56799999999999999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc----c-----CcCE
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG----H-----LKSV  367 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v  367 (471)
                      +|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+..    .     ....
T Consensus       209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c  286 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC  286 (315)
T ss_pred             cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence            99999999999999999877665 78999999999986555554 566699999999988776642    1     2235


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        368 FSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       368 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .+++|++||..|++|-.|+.|++|.+..
T Consensus       287 lslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  287 LSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            6789999999999999999999998753

>KOG0291|consensus

Probab=100.00  E-value=1.3e-34  Score=274.47  Aligned_cols=256  Identities=27%  Similarity=0.459  Sum_probs=225.9

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.||...++|+++||||+++|||+.||.|+|||...|-|..+|..|++.|+++.|+..+.     .+++.+.||+|
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-----~llssSLDGtV  416 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-----VLLSSSLDGTV  416 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-----EEEEeecCCeE
Confidence            3456789999999999999999999999999999999999999999999999999999999998     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe----EEe--ccccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----WRL--DTPLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~----~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      +.||+...+..++|..+.+....+++..|.|..+.+|+.|.-    |.+  ......+.+| .++|.+++|+|.+..|++
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccCeEEe
Confidence            999999999999999999889999999999999999999875    333  3445678888 779999999999999999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc---------------
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG---------------  362 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------------  362 (471)
                      ++.|.+|++||+-..........+...+..++|.|||+.|++++.||.|.+||...+..+.++.+               
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t  575 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT  575 (893)
T ss_pred             ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence            99999999999866533333334677899999999999999999999999999987766644432               


Q ss_pred             -----cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        363 -----HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       363 -----h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                           .....+.+++++||.++++||..+.|++||+.++-+++.+...
T Consensus       576 a~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS  623 (893)
T KOG0291|consen  576 AENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS  623 (893)
T ss_pred             hhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence                 2356899999999999999999999999999999998877543

>KOG0315|consensus

Probab=100.00  E-value=2.4e-34  Score=239.20  Aligned_cols=270  Identities=21%  Similarity=0.289  Sum_probs=229.2

Q ss_pred             hhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEee
Q psy11350        127 TRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~  204 (471)
                      +.++|.|+.....-    +.+.....+.|+.+.+.|+++.||+|+ ...|++||+.+++  ++.+|.+|...|+++.|..
T Consensus        19 DhTIRfWqa~tG~C----~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   19 DHTIRFWQALTGIC----SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             cceeeeeehhcCeE----EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence            44556665544332    223334467899999999999999998 7799999998764  6889999999999999999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc-----ccCCC
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN-----LEGHE  279 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~-----~~~~~  279 (471)
                      ++.     .+++|+.||+++|||++...+.+.+...  .+|+++..+|+...+++|..+|.+++|.....     +....
T Consensus        94 dgr-----WMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   94 DGR-----WMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             cCe-----EEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            999     7999999999999999987666666655  38999999999999999999999777654433     33333


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCC------cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG------QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      ...|.++...|+|.+++.+...|+.++|++-..      +++..++.|.+.+..+.+|||+++|++++.|.+++||+.++
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            457999999999999999999999999998654      35667889999999999999999999999999999999988


Q ss_pred             C-eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCC
Q psy11350        354 G-RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPN  408 (471)
Q Consensus       354 ~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  408 (471)
                      . +.-..+.+|...+..++||.||.||+||+.|+.+++||+..++.+.....++..
T Consensus       247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence            7 666788899999999999999999999999999999999999988776655543

>KOG0286|consensus

Probab=100.00  E-value=2e-34  Score=245.04  Aligned_cols=234  Identities=25%  Similarity=0.420  Sum_probs=214.7

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      .+..|..++|+|.|+++|.|+-|+...||++.+.      +..+.+.+|.+.+.|+.|.+++.      |++++.|.+..
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~------ilT~SGD~TCa  169 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH------ILTGSGDMTCA  169 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc------eEecCCCceEE
Confidence            5678999999999999999999999999999854      45567899999999999999775      99999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEec-----cccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      +||+++++.+..|.+|.. .|.++.++| +++.+++|+-|+...+|     .....+.+| ...|.++.|.|+|.-|++|
T Consensus       170 lWDie~g~~~~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  170 LWDIETGQQTQVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             EEEcccceEEEEecCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEccCCCeeeec
Confidence            999999999999999998 999999999 99999999999984443     346678888 6689999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      +.|++.++||++..+.+..+..  -..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|...|.++..+|||
T Consensus       248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG  327 (343)
T KOG0286|consen  248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG  327 (343)
T ss_pred             CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence            9999999999999888877653  34689999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEE
Q psy11350        377 YHLATGSEDNAVKIWD  392 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd  392 (471)
                      .-++|||.|.+++||.
T Consensus       328 ~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  328 MAVATGSWDSTLRIWA  343 (343)
T ss_pred             cEEEecchhHheeecC
Confidence            9999999999999994

>KOG0276|consensus

Probab=100.00  E-value=8.2e-35  Score=270.29  Aligned_cols=247  Identities=24%  Similarity=0.440  Sum_probs=231.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .|+..|.++.|+|....++++-.+|.|.|||.++...++.+....-||.+..|.+..+     .+++|+.|..|+||+..
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn-----Wiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN-----WIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc-----eEEEecCCceEEEEecc
Confidence            4889999999999999999999999999999999999999999899999999999888     69999999999999999


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe------ccccccccCCCCcceEEEEECC-CCCEEEEEecCC
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL------DTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDH  302 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~------~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg  302 (471)
                      +++.++.|..|.+ .|.+++.+|...++++++.|-.+++      |.....+.+| ..-|.+++|+| |.+.|++++.|+
T Consensus        86 t~ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   86 TGEKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             cceeeEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeeccc
Confidence            9999999999998 8999999999999999999998666      4567788999 55799999999 677999999999


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  380 (471)
                      +|++|.+.+..+..++++|...|+|++|-+  |..+|++|+.|.+|+|||..+..|++++.||...|..+.|+|.-.+++
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence            999999999999999999999999999988  446999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCccchheec
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      |||.||+++||+..+-++..++.
T Consensus       244 sgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             EecCCccEEEecCcceehhhhhh
Confidence            99999999999999888776553

>KOG0265|consensus

Probab=100.00  E-value=4.8e-34  Score=243.59  Aligned_cols=253  Identities=23%  Similarity=0.416  Sum_probs=220.3

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTV-PECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+.||++.|..+.|+|+|.+||+|+.|..|.+|++ ...+-...+++|.+.|..+.|.+++.     .+++++.|.+|+.
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s-----~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS-----HILSCGTDKTVRG  116 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC-----EEEEecCCceEEE
Confidence            35699999999999999999999999999999995 45667778899999999999999998     6999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEecccc---ccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      ||+++|+++..++.|.. -++++.-+.-|. ++.+++.|++++++...   .......+..++++.|..++..+.+|+-|
T Consensus       117 wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             Eecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence            99999999999999987 788888655565 55677888887765433   22222235679999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC----eeEEEecccCc----CEEEEEEc
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG----RCIMFLEGHLK----SVFSVDFS  373 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~h~~----~v~~~~~s  373 (471)
                      +.|++||++.+.....+.||..+|+.+..+|+|.++.+-++|.++++||++-.    +++..+.+|..    ....++|+
T Consensus       196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence            99999999999999999999999999999999999999999999999999843    56777877643    46678999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        374 PDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       374 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      |++..+.+|+.|..+++||....+.++.++.+
T Consensus       276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh  307 (338)
T KOG0265|consen  276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGH  307 (338)
T ss_pred             CCCCccccccccceEEEeecccccEEEEcCCc
Confidence            99999999999999999999998888877644

>KOG0295|consensus

Probab=100.00  E-value=1.3e-34  Score=252.97  Aligned_cols=243  Identities=29%  Similarity=0.500  Sum_probs=224.5

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE-CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ...++||+..|..++|+..|++||+++.|-.+++||..+ .++++.+.+|...|.+++|-|.+.     ++++++.|.+|
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-----~ilS~srD~ti  217 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-----HILSCSRDNTI  217 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC-----eeeecccccce
Confidence            446679999999999999999999999999999999987 577888889999999999999997     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCC-------
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPS-------  291 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~-------  291 (471)
                      +.|++.++.++.++.+|.. -|..+..+.||..+++++.|..+++|..     ...+..| ..+|.+++|.|.       
T Consensus       218 k~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~  295 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSIS  295 (406)
T ss_pred             eEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchh
Confidence            9999999999999999998 8999999999999999999999777532     4456666 668999999773       


Q ss_pred             --------CCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc
Q psy11350        292 --------GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH  363 (471)
Q Consensus       292 --------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h  363 (471)
                              ++++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++++|+.++..|
T Consensus       296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             hccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence                    258999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ..-|++++|+.+-.+++||+-|.++++|..+
T Consensus       376 ~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  376 EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             cceeEEEecCCCCceEEeccccceeeeeecC
Confidence            9999999999999999999999999999753

>KOG0285|consensus

Probab=100.00  E-value=2.6e-34  Score=250.42  Aligned_cols=254  Identities=23%  Similarity=0.368  Sum_probs=234.0

Q ss_pred             ccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        141 SLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       141 ~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      +..++..+.||.+.|.|+++.|-+.++++|+.|++|+|||+.+|++..++.+|...|..+++++...     |+++++.|
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp-----YlFs~ged  214 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP-----YLFSAGED  214 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc-----eEEEecCC
Confidence            3456667789999999999999999999999999999999999999999999999999999999988     89999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCCEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +.|+.||++.++.+..+.+|-. .|.+++.+|.-..|++|+.|.++++|.     .+..+.+| ..+|..+.+.|-...+
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dpqv  292 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDPQV  292 (460)
T ss_pred             CeeEEEechhhhhHHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCCce
Confidence            9999999999999999999987 899999999999999999999966653     45567888 6689999999988899


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ++|+.|++|++||++.++....+..|...|.+++.+|....+++++.|. |+-|++..|..+..+.+|+.-|++++...|
T Consensus       293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD  371 (460)
T KOG0285|consen  293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSD  371 (460)
T ss_pred             EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccC
Confidence            9999999999999999999999999999999999999999999998775 899999999999999999999999999877


Q ss_pred             CCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                       .++++|+++|.+.+||.+++...+.+.
T Consensus       372 -~v~~~G~dng~~~fwdwksg~nyQ~~~  398 (460)
T KOG0285|consen  372 -GVLVSGGDNGSIMFWDWKSGHNYQRGQ  398 (460)
T ss_pred             -ceEEEcCCceEEEEEecCcCccccccc
Confidence             578899999999999999997766553

>KOG0318|consensus

Probab=100.00  E-value=3.7e-33  Score=254.63  Aligned_cols=265  Identities=18%  Similarity=0.278  Sum_probs=217.2

Q ss_pred             cccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee---cCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR---GHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      ++|....+++.|+.-|.|+.|+|||.++|+++.||.|.+||-.+|+.+..+.   +|++.|.+|+|+|++.     .+++
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-----~~~T  252 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-----QFLT  252 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----eEEE
Confidence            3566677888999999999999999999999999999999999999999998   8999999999999998     6999


Q ss_pred             EeCCCcEEEEeCCCCcceeeec-------------------------------------------CCCCcceEEEEECCC
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLE-------------------------------------------GHEPFRVSRIKFHPS  253 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~-------------------------------------------~~~~~~v~~~~~s~~  253 (471)
                      ++.|.+++|||+.+++++.++.                                           +|.. .|+++..+|+
T Consensus       253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d  331 (603)
T KOG0318|consen  253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPD  331 (603)
T ss_pred             ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCC
Confidence            9999999999998765444333                                           3333 7999999999


Q ss_pred             CCEEEEEeCCCeEEecccc---c-cc--cCC-------------------------------------------------
Q psy11350        254 GRFLGTCCWDHSWRLDTPL---A-NL--EGH-------------------------------------------------  278 (471)
Q Consensus       254 ~~~i~~~~~d~~~~~~~~~---~-~~--~~~-------------------------------------------------  278 (471)
                      +++|++|+.||.+.-|...   . .+  ..|                                                 
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l  411 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL  411 (603)
T ss_pred             CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence            9999999999873331000   0 00  000                                                 


Q ss_pred             ------------------------------CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEeeCCCCCeE
Q psy11350        279 ------------------------------EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE--VLHQEGHGKPVY  326 (471)
Q Consensus       279 ------------------------------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~  326 (471)
                                                    ......+++++|+++.+++|+.||.|+||.+.....  ......|.++|+
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT  491 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence                                          001356889999999999999999999999987653  334667999999


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE-EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        327 CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM-FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       327 ~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +++||||+.+|++|...+.+.+||+.+.+... .+.-|...|.+++|+|+..++||||-|-+|.||++++....-.+...
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA  571 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA  571 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc
Confidence            99999999999999999999999999886533 33349999999999999999999999999999999877655455555


Q ss_pred             CCCcc
Q psy11350        406 LPNSI  410 (471)
Q Consensus       406 ~~~~~  410 (471)
                      ++..+
T Consensus       572 H~~gV  576 (603)
T KOG0318|consen  572 HLGGV  576 (603)
T ss_pred             cccCc
Confidence            54443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.4e-33  Score=256.78  Aligned_cols=250  Identities=35%  Similarity=0.625  Sum_probs=222.3

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+.+|..+|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|++.     .+++++.||.|++|
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~~~~i~i~   78 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT-----YLASGSSDKTIRLW   78 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC-----EEEEEcCCCeEEEE
Confidence            4568999999999999999999999999999999999888888899999999999999986     79999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      ++.+++....+..+.. .+.++.|++++.++++++.++.+.++..     ...+..| ...+.++.|+|++.++++++.+
T Consensus        79 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          79 DLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             EcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCcCCEEEEEcCC
Confidence            9998888888877765 8999999999999998888888666433     2333444 5579999999999999988889


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      +.|++||+++++.+..+..|...+.+++|+|+++.+++++.++.|++||+++++.+..+..|...+.++.|+|++.++++
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence            99999999999888888899999999999999999999999999999999999999888889999999999999899999


Q ss_pred             EeCCCcEEEEECCCccchheec
Q psy11350        382 GSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++.||.|++||+.+++++..+.
T Consensus       237 ~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         237 GSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             EcCCCcEEEEEcCCceeEEEcc
Confidence            8889999999999877665443

>KOG0263|consensus

Probab=100.00  E-value=3.3e-34  Score=273.99  Aligned_cols=203  Identities=32%  Similarity=0.593  Sum_probs=191.7

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ...++.||++||..+.|+|+.++|++++.|+++++|.+.+..++-.+++|..||+.+.|+|.|-     +++|++.|++-
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-----YFatas~D~tA  517 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-----YFATASHDQTA  517 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-----EEEecCCCcee
Confidence            3345889999999999999999999999999999999999999999999999999999999987     89999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ++|......+++.+.+|.. .|.|+.|+|+..|+++|+.|.++++|.     .++.+.+| ..+|.+++|+|+|++|++|
T Consensus       518 rLWs~d~~~PlRifaghls-DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLS-DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             eeeecccCCchhhhccccc-ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEeec
Confidence            9999999999999999987 899999999999999999999977754     46678887 7799999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      +.||.|.+||+.+++.+..+.+|.+.|+++.|+.||..|++|+.|++|++||+..
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999999999999999999999999999999999999999999864

>KOG0291|consensus

Probab=100.00  E-value=2.3e-32  Score=259.17  Aligned_cols=328  Identities=20%  Similarity=0.292  Sum_probs=266.2

Q ss_pred             hccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        138 HLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       138 ~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      .+.++.......||-..|+++.|+.|.++|++|+.|-+++||.+...+-  ...+.+|...|.+.-|..+..     -++
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~-----~l~  205 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL-----DLY  205 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc-----eEE
Confidence            5667888888999999999999999999999999999999999986655  667789999999999988887     499


Q ss_pred             EEeCCCcEEEEeCCC-----------------------Ccc-e---------eeecCCCCcceEEEEECCCCCEEEEEeC
Q psy11350        216 SCAQDGSVKLWSLDK-----------------------DTP-L---------ANLEGHEPFRVSRIKFHPSGRFLGTCCW  262 (471)
Q Consensus       216 s~~~dg~i~iwd~~~-----------------------~~~-~---------~~~~~~~~~~v~~~~~s~~~~~i~~~~~  262 (471)
                      +.+.||.+.+|....                       ++. .         +.+-......+++.+|++..+.++++-.
T Consensus       206 tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs  285 (893)
T KOG0291|consen  206 TVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS  285 (893)
T ss_pred             EEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec
Confidence            999999999998751                       111 0         1111222357999999999999999999


Q ss_pred             CCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecC-CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCE
Q psy11350        263 DHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSV  336 (471)
Q Consensus       263 d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  336 (471)
                      .|.+.+...     +..+... ..+|..++|+..|.+||.|+.. |.+-||+.++...+..+++|...+++++++|||++
T Consensus       286 sG~f~LyelP~f~lih~LSis-~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~  364 (893)
T KOG0291|consen  286 SGEFGLYELPDFNLIHSLSIS-DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQL  364 (893)
T ss_pred             CCeeEEEecCCceEEEEeecc-cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcE
Confidence            998766332     2222222 3479999999999999998865 89999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeecc
Q psy11350        337 VATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLL  416 (471)
Q Consensus       337 l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  416 (471)
                      ++||+.||.|+|||..++-|+.+|..|+..|+.+.|+..|+.+++.|-||+|+.||+...+..+++..+.|.....+++-
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777655555554


Q ss_pred             ccceeeeecccCCCcccccchhhhccccccee-eecccceeeeecCCeEEEeecCC
Q psy11350        417 TDLYIDVLESLNPGIGNIISSALKEQVEPIPL-LLDIQKLTFKFDSDLHAMVLNQK  471 (471)
Q Consensus       417 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~fs~dg~~lA~~~~~~  471 (471)
                      ..+.+.+....+.=...+++-..++.+..+.. ..++..|+|+|+|..||..+=+|
T Consensus       445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            44444443333332333444444444444443 34688999999999999887543

>KOG0282|consensus

Probab=100.00  E-value=7.4e-35  Score=263.38  Aligned_cols=245  Identities=25%  Similarity=0.381  Sum_probs=211.9

Q ss_pred             cccceeeeeecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCC-CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPE-CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      -+-...+++.||+..|+++.|.| .+.+|++|+.|+.|+||++.+ ++++++|.+|..+|..++|++.+.     .++++
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-----~fLS~  276 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-----SFLSA  276 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----eeeee
Confidence            34455678899999999999999 889999999999999999976 899999999999999999999998     69999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCC-CEEEEEeCCCeEEec-----cccccccCCCCcceEEEEECCC
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~  291 (471)
                      +.|+.|++||+++|+++..+....  .+.++.|+|++ +.+++|+.|+.+..|     ..+..+..| -+.|..+.|-++
T Consensus       277 sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~~i~F~~~  353 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAILDITFVDE  353 (503)
T ss_pred             ecceeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhheeeeEEccC
Confidence            999999999999999999987665  78999999999 788899999884443     234445555 568999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEE----------------------------------------------EeeCCC--C
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVL----------------------------------------------HQEGHG--K  323 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------------~~~~~~--~  323 (471)
                      |+++++++.|++++||+.+.+-++.                                              .+.+|.  +
T Consensus       354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG  433 (503)
T ss_pred             CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence            9999999999999999987532111                                              123443  3


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q psy11350        324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWD  392 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd  392 (471)
                      .-..+.|||||.+|++|+.||.+.+||.++.+.+..+++|.+++..+.|+|. ...+|||+.||.|++||
T Consensus       434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            3457899999999999999999999999999999999999999999999994 56899999999999996

>KOG0273|consensus

Probab=100.00  E-value=1e-32  Score=248.70  Aligned_cols=239  Identities=23%  Similarity=0.500  Sum_probs=220.5

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ++.-|++||.++.|+.+|+||++++.||++.+||..++...+.+.-|..+-..|.|-.+..      +++++.||.|+|+
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~------F~ts~td~~i~V~  344 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE------FATSSTDGCIHVC  344 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce------EeecCCCceEEEE
Confidence            4557999999999999999999999999999999999999999999988877899988875      9999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCC---------
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSG---------  292 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~---------  292 (471)
                      .+....++.++.+|.. .|.++.|.|.|..+++++.|+++++|..     ...+..| ...|..+.|+|.|         
T Consensus       345 kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~  422 (524)
T KOG0273|consen  345 KVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMN  422 (524)
T ss_pred             EecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCC
Confidence            9999999999999887 9999999999999999999999888763     3456666 4479999999965         


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      ..+++++.|++|++||+..+.++..+..|..+|++++|+|+|+++++|+.||.|.+|+.++++.++.+.+ .+.|..++|
T Consensus       423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~W  501 (524)
T KOG0273|consen  423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCW  501 (524)
T ss_pred             ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEE
Confidence            3699999999999999999999999999999999999999999999999999999999999999999875 467999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECC
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +.+|.+|..+-.||.+++.|++
T Consensus       502 n~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  502 NAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999986

>KOG0293|consensus

Probab=100.00  E-value=9.1e-34  Score=251.33  Aligned_cols=248  Identities=25%  Similarity=0.368  Sum_probs=203.3

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC---ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      ....+..|+..|+-+.||++|+|||+++.|.+..+|.+...   +..+++.+|..+|..+.|+|+..     +|++|+.|
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-----yLlaCg~~  290 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-----YLLACGFD  290 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-----eEEecCch
Confidence            34556789999999999999999999999999999998543   45778889999999999999998     79999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc----ccccCC------------------
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL----ANLEGH------------------  278 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~----~~~~~~------------------  278 (471)
                      ..+.+||+.+|.....+....+..+.+++|.|||..+++|+.|+.+..+...    ....+-                  
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVL  370 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEE
Confidence            9999999999999998887766799999999999999999998874432111    011111                  


Q ss_pred             -----------------------CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCC--eEEEEEeC-
Q psy11350        279 -----------------------EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP--VYCMSFQG-  332 (471)
Q Consensus       279 -----------------------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~-  332 (471)
                                             ...+|++++.+.+++++++.-.+..+++||++..+.+..+.||...  +-.-+|-- 
T Consensus       371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence                                   1224666777777777777767777777777777777777787644  44445654 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc
Q psy11350        333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       333 d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +..++++|+.|+.|+||+..+|+++..+.||...|++++|+| +..++|+||+||+|+||.....
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            558999999999999999999999999999999999999999 6678999999999999987643

>KOG0316|consensus

Probab=100.00  E-value=5.5e-33  Score=229.26  Aligned_cols=249  Identities=22%  Similarity=0.340  Sum_probs=220.0

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+.+|.++|.++.|+-||+|.++++.|.+|++||+..|.+++++.+|...|..++.+.++.     .+++|+.|..+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-----kf~s~GgDk~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-----KFASCGGDKAVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-----ccccCCCCceEEE
Confidence            34568999999999999999999999999999999999999999999999999999999988     5999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-------cccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-------LANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ||+.+|+.+..+.+|.. .|+.+.|+.+...+++|+.|..++.|..       +..+... ...|.++..+  +..|++|
T Consensus        86 wDV~TGkv~Rr~rgH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EEcccCeeeeecccccc-eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEec--ccEEEee
Confidence            99999999999999998 9999999999999999999999888643       3333333 4468888775  5679999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE--EEEEcCCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF--SVDFSPDG  376 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~~~~sp~~  376 (471)
                      +.||+++.||++.|+......  ..||++++|++|++..++++.|+++++.|-.+|+.+..+++|...-+  ..+++...
T Consensus       162 S~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd  239 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD  239 (307)
T ss_pred             ccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence            999999999999998765554  46899999999999999999999999999999999999999987644  44566667


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .++++|+.||.|.+||+.....+..+..+
T Consensus       240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~  268 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWDLVDETQISKLSVV  268 (307)
T ss_pred             eeEEeccCCceEEEEEeccceeeeeeccC
Confidence            89999999999999999998887766543

>KOG0306|consensus

Probab=100.00  E-value=7.6e-33  Score=262.30  Aligned_cols=275  Identities=21%  Similarity=0.270  Sum_probs=246.6

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ....||...|.++++|.+...+++|+ .+.|+||+..+.++++++..  +.+.+..|.|.+.     ++++|...|.+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~-----~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDR-----YIVLGTKNGELQV  438 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCc-----eEEEeccCCceEE
Confidence            34569999999999999988888887 88999999999999999974  4889999999988     7999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc----------------CCCCcceEEEEEC
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE----------------GHEPFRVSRIKFH  289 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~----------------~~~~~~v~~l~~~  289 (471)
                      ||+.+...+..++.|.+ .+++++.+||+..+++|+.|.++.+|.......                -..+..|.|+.+|
T Consensus       439 fdlaS~~l~Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             EEeehhhhhhhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence            99999999999998887 999999999999999999999977753211111                1123469999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEE
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS  369 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  369 (471)
                      |||++|+++--|++++||-+.+.+....+.||.-||.|+.++||+++++||+.|.+|+||-++-|.|..++.+|...|.+
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC---------CCccceeeccccceeeeecccCC
Q psy11350        370 VDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL---------PNSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       370 ~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      +.|.|....+++||.|+.|+-||-.+.+.++.+..++         |++..+++.+.|.++++|.....
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            9999999999999999999999999999988776654         56667788888899999987664

>KOG0318|consensus

Probab=100.00  E-value=1.4e-31  Score=244.32  Aligned_cols=274  Identities=22%  Similarity=0.352  Sum_probs=221.3

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-  220 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-  220 (471)
                      ....+.+|..+++-..|||.|-|+|+|...|.|+|||....+  +..+++...++|..|+|++++..     |+..+.. 
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~R-----I~avGEGr  125 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKR-----IAAVGEGR  125 (603)
T ss_pred             ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcE-----EEEEecCc
Confidence            344556899999999999999999999999999999986533  33466777899999999999984     5554432 


Q ss_pred             ---CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEecc-c----cccccCCCCcceEEEEECCC
Q psy11350        221 ---GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDT-P----LANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       221 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~-~----~~~~~~~~~~~v~~l~~~~~  291 (471)
                         |.+.+||  +|..+..+.+|.. .|.++.|-|... .+++|+.|+.+.+.. +    ...+..| ..-|.++.|+||
T Consensus       126 erfg~~F~~D--SG~SvGei~GhSr-~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H-skFV~~VRysPD  201 (603)
T KOG0318|consen  126 ERFGHVFLWD--SGNSVGEITGHSR-RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREH-SKFVNCVRYSPD  201 (603)
T ss_pred             cceeEEEEec--CCCccceeeccce-eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccc-ccceeeEEECCC
Confidence               3456666  7888999999988 899999999887 689999999977733 2    2234455 446999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEEee---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE----------
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVLHQE---GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM----------  358 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~----------  358 (471)
                      |.+|++++.||+|.+||-.+++.+..+.   +|.+.|.+++|+||++.+++++.|.+++|||+.+.+++.          
T Consensus       202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence            9999999999999999999999999887   899999999999999999999999999999988654432          


Q ss_pred             ---------------------------------EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        359 ---------------------------------FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       359 ---------------------------------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                                                       .+.||...|+++..+|++.+|++|+.||.|.-|+..++..-+.....
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~  361 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG  361 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence                                             24689999999999999999999999999999999888655432222


Q ss_pred             CCC---------ccceeeccccceeeeecc
Q psy11350        406 LPN---------SIGVTSLLTDLYIDVLES  426 (471)
Q Consensus       406 ~~~---------~~~~~~~~~d~~~~~~~~  426 (471)
                      +.+         ...+.++..|..+.+...
T Consensus       362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  362 HTNQIKGMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             ccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence            221         134555566666665544

>KOG0284|consensus

Probab=100.00  E-value=1.7e-34  Score=255.62  Aligned_cols=244  Identities=25%  Similarity=0.461  Sum_probs=216.6

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      +.....+.+|..+|.++.|+++|.++++|+.+|.|++|+.. ...++.+..|. ..|.+++|+|...     .+++++.|
T Consensus       128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDs-----kF~t~SdD  201 (464)
T KOG0284|consen  128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDS-----KFLTCSDD  201 (464)
T ss_pred             eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCc-----eeEEecCC
Confidence            44444567899999999999999999999999999999964 45555555554 8999999999777     69999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      |+|+|||....+....+.+|.- .|.++.|+|....|++++.|..+.+|.+     +.++.+| +..|..+.|+|++++|
T Consensus       202 g~ikiWdf~~~kee~vL~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~N~L  279 (464)
T KOG0284|consen  202 GTIKIWDFRMPKEERVLRGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNGNWL  279 (464)
T ss_pred             CeEEEEeccCCchhheeccCCC-CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCCCee
Confidence            9999999988888888877765 8999999999999999999999888654     5566677 6689999999999999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEEEEc
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFS  373 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s  373 (471)
                      ++++.|..++++|+++.+.++.+.+|...|+++.|+| ...+|.+|+.||.|..|.+...+++..+. +|...|.+++|+
T Consensus       280 lt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  280 LTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH  359 (464)
T ss_pred             EEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc
Confidence            9999999999999999999999999999999999999 67799999999999999998666665554 799999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEC
Q psy11350        374 PDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       374 p~~~~l~s~s~dg~i~iwd~  393 (471)
                      |=|.+|++|+.|.++++|.-
T Consensus       360 PlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  360 PLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccceeEeecCCCcceeeecc
Confidence            99999999999999999975

>KOG0643|consensus

Probab=100.00  E-value=1.5e-32  Score=230.83  Aligned_cols=241  Identities=21%  Similarity=0.351  Sum_probs=211.6

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+.||.+|++-+.|+.+|.+|++++.|.+..||-..+|+.+.++.+|.+.|+|+....+..     .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~-----~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK-----HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc-----eeeeccccceeEEE
Confidence            4679999999999999999999999999999999989999999999999999999998888     69999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--------EEec---------cccccccCCCCcceEEEEEC
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--------WRLD---------TPLANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--------~~~~---------~~~~~~~~~~~~~v~~l~~~  289 (471)
                      |+.+|+++..++...  +|..+.|+++|++++.+..+..        +++.         .|...+..+ ...++.+-|.
T Consensus        80 Dv~tGk~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg  156 (327)
T KOG0643|consen   80 DVETGKQLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWG  156 (327)
T ss_pred             EcCCCcEEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeec
Confidence            999999999988766  7999999999999998876532        2222         233444445 4579999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCc-EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE---------
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF---------  359 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~---------  359 (471)
                      |-+.+|++|..||.|.+||+++++ .+.....|...|+.++++||..++++++.|.+-++||+++-+++++         
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~  236 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNT  236 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccc
Confidence            999999999999999999999985 4555678999999999999999999999999999999886443332         


Q ss_pred             ----------------------------------------------ecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        360 ----------------------------------------------LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       360 ----------------------------------------------~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                                                                    +++|-++|++++|+|+|+..++|+.||.|++.-+
T Consensus       237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence                                                          3678999999999999999999999999999866


Q ss_pred             CC
Q psy11350        394 RK  395 (471)
Q Consensus       394 ~~  395 (471)
                      ..
T Consensus       317 d~  318 (327)
T KOG0643|consen  317 DS  318 (327)
T ss_pred             cc
Confidence            54

>KOG0645|consensus

Probab=100.00  E-value=1.6e-31  Score=225.12  Aligned_cols=279  Identities=21%  Similarity=0.313  Sum_probs=217.6

Q ss_pred             cceeeeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCC---ceEEEe-ecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPEC---ELVQTF-RGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~---~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      +-....+.||++.|..++|+|- |..||+|+.|..|++|+...+   .+...+ .+|+..|..++|+|.++     +|++
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-----~La~   78 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-----YLAS   78 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-----EEEE
Confidence            3456678899999999999998 889999999999999998743   333333 27999999999999999     8999


Q ss_pred             EeCCCcEEEEeCCCC--cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE
Q psy11350        217 CAQDGSVKLWSLDKD--TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      ++.|.++.||.-..+  +++..+.+|.                                       ..|.+++|+++|++
T Consensus        79 aSFD~t~~Iw~k~~~efecv~~lEGHE---------------------------------------nEVK~Vaws~sG~~  119 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGEFECVATLEGHE---------------------------------------NEVKCVAWSASGNY  119 (312)
T ss_pred             eeccceEEEeecCCCceeEEeeeeccc---------------------------------------cceeEEEEcCCCCE
Confidence            999999999986533  3444444443                                       37999999999999


Q ss_pred             EEEEecCCeEEEEECCCC---cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC---CCeeEEEecccCcCEE
Q psy11350        295 LGTCCWDHSWRLWDLNQG---QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR---TGRCIMFLEGHLKSVF  368 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~---~~~~~~~~~~h~~~v~  368 (471)
                      ||+++.|..|-||.+..+   .+...+++|...|..+.|+|...+|++++.|++|++|+-.   ...+++++.+|...|.
T Consensus       120 LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW  199 (312)
T KOG0645|consen  120 LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVW  199 (312)
T ss_pred             EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEE
Confidence            999999999999998754   4667789999999999999999999999999999999865   3378999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCc------cchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcc
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKR------RLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQ  442 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  442 (471)
                      +++|+|.|..|++++.|++|+||-+.+.      ..++.++=   ....+.+...|..|.++..........+....+. 
T Consensus       200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W---~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-  275 (312)
T KOG0645|consen  200 SLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPW---DNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-  275 (312)
T ss_pred             EEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeee---cccceEeccCCCEEEEEEecCCCCCchHHHHHhh-
Confidence            9999999999999999999999985532      11221111   1346677778888887776643222222211111 


Q ss_pred             cccceeeecccceeeeec-CCeEEEeecC
Q psy11350        443 VEPIPLLLDIQKLTFKFD-SDLHAMVLNQ  470 (471)
Q Consensus       443 ~~~~~~~~~~~~l~fs~d-g~~lA~~~~~  470 (471)
                        .-....+++.++++|. +..|+.++++
T Consensus       276 --~~aHe~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  276 --EGAHEVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             --hcccccccceEEEcCCCCCceeecCCC
Confidence              1122337889999995 6777777664

>KOG0266|consensus

Probab=100.00  E-value=6.7e-32  Score=264.49  Aligned_cols=255  Identities=29%  Similarity=0.535  Sum_probs=226.9

Q ss_pred             eeeeecC-CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        145 YCSQVGD-TRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       145 ~~~~~gh-~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ...+.+| ...|.++.|+|+|++|++++.++.+++|++.+.+  ..+.+.+|...|..++|+|++.     ++++++.|+
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-----~l~s~s~D~  225 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-----YLLSGSDDK  225 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-----EEEEecCCc
Confidence            4455455 8999999999999999999999999999998777  7778889999999999999998     799999999


Q ss_pred             cEEEEeC-CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCCEE
Q psy11350        222 SVKLWSL-DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       222 ~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +|+|||+ ..+..+..+.+|.. .|++++|+|+|+.+++|+.|+++++|.     +...+.+| ...|++++|++++++|
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~-~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHST-YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDGNLL  303 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCC-ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCCCEE
Confidence            9999999 55588899999988 899999999999999999999977754     45567788 5589999999999999


Q ss_pred             EEEecCCeEEEEECCCCc--EEEEeeCCCCC--eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC---EE
Q psy11350        296 GTCCWDHSWRLWDLNQGQ--EVLHQEGHGKP--VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS---VF  368 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~---v~  368 (471)
                      ++++.|+.|++||+.++.  ++..+.++..+  +++++|+|++.++++++.|+.+++||+..+.++..+.+|...   +.
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF  383 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence            999999999999999998  56677666555  999999999999999999999999999999999999999875   34


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                      +...++.+.++++|+.|+.|++||+.++..+..+..+.
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence            44557789999999999999999999998888777663

>KOG0281|consensus

Probab=100.00  E-value=7.4e-34  Score=246.74  Aligned_cols=261  Identities=22%  Similarity=0.437  Sum_probs=221.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .....|.|+.+  |...+++|..|++|+|||..+..+...+.||++.|.|+.|...       ++++|+.|.+|++||++
T Consensus       195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-------viisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-------VIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             ccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-------EEEecCCCceEEEEecc
Confidence            35678999988  5578999999999999999999999999999999999999654       79999999999999999


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc--------cccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP--------LANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      +++++.++.+|.. .|..+.|+  ..++++++.|.++.+|..        ...+.+| ...|..+.|+  .+++++++.|
T Consensus       266 tge~l~tlihHce-aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  266 TGEPLNTLIHHCE-AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             CCchhhHHhhhcc-eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccc--cceEEEecCC
Confidence            9999999999887 88888886  569999999998655432        3346777 5579999996  4699999999


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      .+|++|++.+++.++++.+|...|-|+.+  .|+++++|+.|.+|++||+..|.++..+.||..-|.++.|  |.+.+++
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS  415 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS  415 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence            99999999999999999999999999887  6899999999999999999999999999999999999999  5688999


Q ss_pred             EeCCCcEEEEECCCccch---------heecccCC-------CccceeeccccceeeeecccCC
Q psy11350        382 GSEDNAVKIWDLRKRRLL---------KWCTQLLP-------NSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~~~~---------~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      |+.||+|+|||+..+...         .++..+..       ....+++.+.|..|.+|+..+.
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence            999999999999876432         22222221       2345666667777777776654

>KOG1407|consensus

Probab=100.00  E-value=3e-32  Score=228.23  Aligned_cols=251  Identities=20%  Similarity=0.317  Sum_probs=217.8

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE--EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ--TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      .+.+|...|.+++|+.+|..|++|+.|+++.+|++...+...  ..++|.+.|-.++|+|..++    .+++++.|.+|+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d----~~atas~dk~ir   90 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPD----LFATASGDKTIR   90 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCc----ceEEecCCceEE
Confidence            345799999999999999999999999999999998765443  45689999999999998876    899999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe---ccccccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      +||++++++...+....  .-.-+.|+|+|.+++++..|..+.+   .+....-.......+..++|+.++.+|+..+..
T Consensus        91 ~wd~r~~k~~~~i~~~~--eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKG--ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EEEeccCcEEEEeeccC--cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            99999999998877655  3456899999999999999887544   222222222224468889999888888777778


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      |+|.|......+++..+..|.....||.|+|+|+++|+|+.|..+.+||+..--|+..+..+.-+|..+.||.||++||+
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence            99999999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCccchheec
Q psy11350        382 GSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ||.|..|-|=++.+|..+..++
T Consensus       249 aSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  249 ASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             cCccceEEeEecccCCeEEEee
Confidence            9999999999999998877554

>KOG0315|consensus

Probab=100.00  E-value=1.6e-31  Score=222.41  Aligned_cols=266  Identities=20%  Similarity=0.260  Sum_probs=216.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc--ceeeecCCCC
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT--PLANLEGHEP  242 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~  242 (471)
                      -+|+++++|.+|++|...+|.+.++++...+.|+.+...|++.     .|++++. ..|++||++++.  ++.++.+|..
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~-----~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK-----DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK   84 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc-----hhhhccC-CeeEEEEccCCCCCceeEEeccCC
Confidence            4799999999999999999999999998899999999999998     4666664 689999998775  6888999987


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEeccc---cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Q psy11350        243 FRVSRIKFHPSGRFLGTCCWDHSWRLDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE  319 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  319 (471)
                       .|+.+.|..+|+.+++|+.||++++|..   ...-.-....+|+++..+|+...|++|..+|.|++||+....+...+.
T Consensus        85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence             8999999999999999999999777543   222222235689999999999999999999999999999887666554


Q ss_pred             C-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC------eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        320 G-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG------RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       320 ~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      + ...+|.++...|||++|+.+...|+.++|++-..      .++..++.|.+.+..+.+|||+++|+++|.|.+++||+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence            3 4568999999999999999999999999998654      46677889999999999999999999999999999999


Q ss_pred             CCCc-cchheeccc---------CCCccceeeccccceeeeecccCCCcccccch
Q psy11350        393 LRKR-RLLKWCTQL---------LPNSIGVTSLLTDLYIDVLESLNPGIGNIISS  437 (471)
Q Consensus       393 ~~~~-~~~~~~~~~---------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  437 (471)
                      .+.. +.-..+..+         +..+..+++.++|...++|..........+.+
T Consensus       244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence            9887 333333322         23344555556666666666555544444433

>KOG0266|consensus

Probab=100.00  E-value=9.8e-32  Score=263.32  Aligned_cols=243  Identities=27%  Similarity=0.523  Sum_probs=219.8

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTV-PECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ..+.+|...|.+++|+|+++++++|+.|++|+|||+ ..+..++++++|...|++++|+|.++     ++++|+.|++|+
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-----~i~Sgs~D~tvr  271 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-----LLVSGSDDGTVR  271 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-----EEEEecCCCcEE
Confidence            344799999999999999999999999999999999 56689999999999999999999996     899999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-------ccccCCCCc-ceEEEEECCCCCEEE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-------ANLEGHEPF-RVSRIKFHPSGRFLG  296 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-------~~~~~~~~~-~v~~l~~~~~~~~l~  296 (471)
                      |||+.+++++..+.+|.. .|++++|++++.++++++.|+.+++|...       ..+..+... .++.+.|+|++.+++
T Consensus       272 iWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence            999999999999999998 99999999999999999999997775432       344555444 699999999999999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCC---eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-CcCEEEEEE
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKP---VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-LKSVFSVDF  372 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~  372 (471)
                      +++.|+.+++||+..+..+..+.+|...   +.+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|
T Consensus       351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS  430 (456)
T ss_pred             EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence            9999999999999999999999998875   444555779999999999999999999999999999999 899999999


Q ss_pred             cCCCCEEEEEe--CCCcEEEEECC
Q psy11350        373 SPDGYHLATGS--EDNAVKIWDLR  394 (471)
Q Consensus       373 sp~~~~l~s~s--~dg~i~iwd~~  394 (471)
                      +|..+++++++  .|+.+++|..+
T Consensus       431 ~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  431 HPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCCcCeeeecCcCCCceEEEecCC
Confidence            99999999998  78999999764

>KOG0319|consensus

Probab=100.00  E-value=1.2e-31  Score=253.93  Aligned_cols=279  Identities=23%  Similarity=0.343  Sum_probs=237.2

Q ss_pred             ccceeeeeecCCcCeEEEEE-ecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        141 SLSIYCSQVGDTRPISYCSF-SPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       141 ~~~~~~~~~gh~~~V~~~~~-s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .+.+...+.|-...|..|+| .|+.++||.++..+.+++|++.+..+. .+.+|+..|.++.....+.     +|+||+.
T Consensus       312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~-----llat~sK  385 (775)
T KOG0319|consen  312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGD-----LLATGSK  385 (775)
T ss_pred             ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCc-----EEEEecC
Confidence            34455566788999999996 577899999999999999999887766 7899999999999555554     8999999


Q ss_pred             CCcEEEEeCCCCc----ceeeecCCCCcceEEEEECCCC-CEEEEEeCCCeEEeccccc--------------cccCCCC
Q psy11350        220 DGSVKLWSLDKDT----PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLDTPLA--------------NLEGHEP  280 (471)
Q Consensus       220 dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~~~~~--------------~~~~~~~  280 (471)
                      |.++++|.++.+.    ++....+|.. .|.+++++..+ .+|++++.|+++++|....              ....| .
T Consensus       386 D~svilWr~~~~~~~~~~~a~~~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH-d  463 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCVAQANGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH-D  463 (775)
T ss_pred             CceEEEEEecCCcchhhhhhhhccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh-c
Confidence            9999999885443    4555667776 89999997765 4889999999988765443              22344 4


Q ss_pred             cceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        281 FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       281 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      ..|++++++|+.+.+|+||.|.+.+||+++..+....+.||...|.++.|+|..+.++|+|.|++|+||.+.++.|+++|
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~  543 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF  543 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC---------Cccceeeccccceeeeeccc
Q psy11350        361 EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP---------NSIGVTSLLTDLYIDVLESL  427 (471)
Q Consensus       361 ~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~~~~  427 (471)
                      .||...|..+.|..+|..|+||+.||-|++|+++++.++.++..+..         ....+.+...|..+.+|.--
T Consensus       544 eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  544 EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            99999999999999999999999999999999999999998876643         23344555667777777643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.6e-31  Score=275.40  Aligned_cols=243  Identities=22%  Similarity=0.294  Sum_probs=205.8

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----c----eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC----E----LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----~----~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      +.+|...|++++|+|+|++||+|+.|+.|+||++.+.    .    ....+. +...|.+++|+|....    +|++++.
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~----~las~~~  553 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKS----QVASSNF  553 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCC----EEEEEeC
Confidence            3459999999999999999999999999999997531    1    122333 3568999999986443    7999999


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEecccc-----ccccCCCCcceEEEEEC-CCC
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTPL-----ANLEGHEPFRVSRIKFH-PSG  292 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~-~~~  292 (471)
                      ||+|++||+.+++.+..+..|.. .|++++|+| ++.+|++|+.|+.+++|...     ..+..  ...+.++.|+ +++
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~g  630 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFPSESG  630 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEeCCCC
Confidence            99999999999999988988876 899999997 78999999999997776532     22332  2368999995 578


Q ss_pred             CEEEEEecCCeEEEEECCCCc-EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC------CeeEEEecccCc
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT------GRCIMFLEGHLK  365 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~------~~~~~~~~~h~~  365 (471)
                      .+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|+.|++||++.      ..++..+.+|..
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~  709 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN  709 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence            999999999999999998765 567788999999999997 778999999999999999974      357788999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      .+.+++|+|++.+|++|+.||.|++|+.....++
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            9999999999999999999999999998766544

>KOG0296|consensus

Probab=100.00  E-value=4.3e-31  Score=231.22  Aligned_cols=314  Identities=20%  Similarity=0.228  Sum_probs=244.5

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .++.+|+.+|.+++.+|+.++++||+.|..-.||++.++.....+.+|+..|+++.|+.++.     +|+||+.+|.|+|
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt-----lLATGdmsG~v~v  132 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT-----LLATGDMSGKVLV  132 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce-----EEEecCCCccEEE
Confidence            35568999999999999999999999999999999999999999999999999999999998     8999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe---EEecc--ccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~---~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      |...++.....+...-. .+.-+.|+|.+..+++|+.||.   |++..  ..+.+.+| ..++++=.|.|+|+.++++..
T Consensus       133 ~~~stg~~~~~~~~e~~-dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVE-DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             EEcccCceEEEeecccC-ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCCceEEEEec
Confidence            99999988877763333 7888999999999999999999   33333  23456676 668999999999999999999


Q ss_pred             CCeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec--------ccCcCEEEEE
Q psy11350        301 DHSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE--------GHLKSVFSVD  371 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~~~  371 (471)
                      ||+|++||+.+++++..+.+ ...+.+++.++..+..++.|+.++.+++-+..+|+.+....        .+...+.++.
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            99999999999999888763 34567889999999999999999999999998998877665        3444555665


Q ss_pred             EcC---CCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhccccccee
Q psy11350        372 FSP---DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPL  448 (471)
Q Consensus       372 ~sp---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (471)
                      +.|   .=.+.|+|+-||+|.|||+...++.+.+....+    ++.+.+.+.-.++.....+..+.+....+.....+..
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~----V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG----VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCc----eEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence            555   456789999999999999998888776654333    3333333322233322223333333222222222221


Q ss_pred             -eecccceeeeecCCeEEEeecC
Q psy11350        449 -LLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       449 -~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                       ...+..++.+|+++.+.+++.+
T Consensus       367 H~~~Il~f~ls~~~~~vvT~s~D  389 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLVVTVSDD  389 (399)
T ss_pred             CchheeEEEEcCCCcEEEEecCC
Confidence             2346677888888888887765

>KOG0313|consensus

Probab=100.00  E-value=3.6e-31  Score=232.74  Aligned_cols=266  Identities=27%  Similarity=0.458  Sum_probs=220.5

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      -|...|+++...  ++.+++|++||.+++||. .|+...++.+|.++|.+++|.-.+..  .+.|++++.|.++++|.++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~--~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSS--SCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCc--cceEEEecCCceEEEEEec
Confidence            489999999887  689999999999999995 68999999999999999998765542  2369999999999999987


Q ss_pred             CCcc----eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc------------------------------ccccc
Q psy11350        230 KDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT------------------------------PLANL  275 (471)
Q Consensus       230 ~~~~----~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~------------------------------~~~~~  275 (471)
                      .+..    +..-.+|.. .|.++...++|..+++|+.|..+.+|.                              ++..+
T Consensus       178 ~~~~~~~~~~~~~GHk~-~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  178 VGENKVKALKVCRGHKR-SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             CchhhhhHHhHhccccc-ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            7653    233346666 899999999999999999999876643                              33445


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                      .+| ..+|.++.|++ ...+++++.|.+|+.||+.+++....+.+ ...++++.++|...+|++|+.|..|++||.+++.
T Consensus       257 ~GH-t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~  333 (423)
T KOG0313|consen  257 EGH-TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD  333 (423)
T ss_pred             ccc-ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence            666 55899999998 67899999999999999999998888774 5678999999999999999999999999999763


Q ss_pred             ---eEEEecccCcCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc-chheecccCC--------Cccceeeccccceee
Q psy11350        356 ---CIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRR-LLKWCTQLLP--------NSIGVTSLLTDLYID  422 (471)
Q Consensus       356 ---~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~--------~~~~~~~~~~d~~~~  422 (471)
                         ..++|.+|.+.|.++.|+| +..+|++|+.||++++||+++.+ +++.+..+..        .+..+++...|..++
T Consensus       334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLR  413 (423)
T ss_pred             CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEE
Confidence               4567889999999999999 45678999999999999999988 8888876632        233444445555444


Q ss_pred             ee
Q psy11350        423 VL  424 (471)
Q Consensus       423 ~~  424 (471)
                      +.
T Consensus       414 i~  415 (423)
T KOG0313|consen  414 IF  415 (423)
T ss_pred             Ee
Confidence            43

>KOG0319|consensus

Probab=100.00  E-value=6e-32  Score=256.06  Aligned_cols=242  Identities=24%  Similarity=0.402  Sum_probs=213.0

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC----ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .+.||+..|.++....+|.+|+||+.|.++++|.++++    -++....+|.+.|.+++++..+..    +|+++|.|++
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~as----ffvsvS~D~t  435 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGAS----FFVSVSQDCT  435 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCcc----EEEEecCCce
Confidence            56799999999997777899999999999999987433    344566799999999999776654    8999999999


Q ss_pred             EEEEeCCCCcc-----e----eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEE
Q psy11350        223 VKLWSLDKDTP-----L----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKF  288 (471)
Q Consensus       223 i~iwd~~~~~~-----~----~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~  288 (471)
                      +++|++...+.     .    .....|.. .|++++++|+.+.|++|+.|.+..+|.     ....+.+| ...|+++.|
T Consensus       436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdK-dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~F  513 (775)
T KOG0319|consen  436 LKLWDLPKSKETAFPIVLTCRYTERAHDK-DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSF  513 (775)
T ss_pred             EEEecCCCcccccccceehhhHHHHhhcc-cccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEe
Confidence            99999865211     1    11224444 899999999999999999999966653     34567888 557999999


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF  368 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  368 (471)
                      +|..+.++++|.|++|+||.+.+..++.++.||...|..+.|-.+|+.|++++.||.|++|++.++.|+.++.+|+..|.
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +++.+|.+..++||+.||.|.+|.=.
T Consensus       594 aL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  594 ALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             EEeecCccceeEecCCCeEEEEeecC
Confidence            99999999999999999999999643

>KOG0265|consensus

Probab=100.00  E-value=2.4e-31  Score=227.09  Aligned_cols=250  Identities=21%  Similarity=0.336  Sum_probs=220.3

Q ss_pred             HhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        136 QKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       136 ~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      ++.......+..+.||++.|..+.|.+|++.|++++.|.+|+.||+++|+.++.+++|...|+.+.-+..+..    ++.
T Consensus        74 Wnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~----lv~  149 (338)
T KOG0265|consen   74 WNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQ----LVC  149 (338)
T ss_pred             EeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCe----EEE
Confidence            3445566777888899999999999999999999999999999999999999999999999999985555543    788


Q ss_pred             EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECC
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~  290 (471)
                      +++.||+++|||+++..+++++....  .++++.|..++..+.+|+-|+.+++|.+     ...+.+| ...|+.+..+|
T Consensus       150 SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~  226 (338)
T KOG0265|consen  150 SGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSR  226 (338)
T ss_pred             ecCCCceEEEEeecccchhhccccce--eEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEecc
Confidence            99999999999999998888876554  7999999999999999999987777655     4457788 66899999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCC----cEEEEeeCCC----CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQG----QEVLHQEGHG----KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~----~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      +|.++.+-+.|.++++||++..    +++..+.+|.    .....++|+|++..+.+|+.|..+++||..+...+..+.|
T Consensus       227 ~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG  306 (338)
T KOG0265|consen  227 YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG  306 (338)
T ss_pred             CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC
Confidence            9999999999999999999753    4567777654    3356789999999999999999999999988899999999


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       363 h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      |.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus       307 h~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  307 HYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            999999999999999999999999998743

>KOG0292|consensus

Probab=100.00  E-value=2.6e-31  Score=255.87  Aligned_cols=248  Identities=25%  Similarity=0.435  Sum_probs=224.3

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      ..+..|..++|+|....++++-.+|.|.+||..-+.++..|..|.++|..++|+|..+     +++||+.|..|++|+..
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-----lFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-----LFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-----eEEecCCccEEEEEecc
Confidence            3567889999999999999999999999999999999999999999999999999999     89999999999999999


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec-----cccccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +.+++.++.+|.+ .|..+.|++.-.+|++++.|.++++|     +.+..+.+| ...|.|..|+|....++++|-|.+|
T Consensus        82 ~rrclftL~GHlD-YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLD-YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             cceehhhhccccc-eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccceEEEecccceE
Confidence            9999999999998 89999999999999999999997775     456778888 5579999999999999999999999


Q ss_pred             EEEECCCCc-----------------------------EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe
Q psy11350        305 RLWDLNQGQ-----------------------------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       305 ~iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                      ++||+...+                             ....+.||...|+-++|+|.-.++++|+.|..|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            999985210                             113467999999999999999999999999999999986543


Q ss_pred             --eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        356 --CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       356 --~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                        .+-+..+|.+.|.++-|+|...+++|.|.|++|+|||+.+.+.++++..
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR  290 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence              4557789999999999999999999999999999999999999887743

>KOG0283|consensus

Probab=99.98  E-value=5.2e-31  Score=254.25  Aligned_cols=251  Identities=23%  Similarity=0.311  Sum_probs=205.6

Q ss_pred             ccccceeeeee-cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----------------------------------
Q psy11350        139 LTSLSIYCSQV-GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE----------------------------------  183 (471)
Q Consensus       139 ~~~~~~~~~~~-gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~----------------------------------  183 (471)
                      +..+.....+. +|.+.|+++.||+||+|||+||.||.|+||.+..                                  
T Consensus       253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~  332 (712)
T KOG0283|consen  253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI  332 (712)
T ss_pred             ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence            34444444555 8999999999999999999999999999998744                                  


Q ss_pred             --------------------------CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee
Q psy11350        184 --------------------------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL  237 (471)
Q Consensus       184 --------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  237 (471)
                                                .++++.|.+|.+.|..|.|+.++      +|++++.|.+|+||++....+++.|
T Consensus       333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~------fLLSSSMDKTVRLWh~~~~~CL~~F  406 (712)
T KOG0283|consen  333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN------FLLSSSMDKTVRLWHPGRKECLKVF  406 (712)
T ss_pred             cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC------eeEeccccccEEeecCCCcceeeEE
Confidence                                      01123367899999999999987      6999999999999999999999999


Q ss_pred             cCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccccccc---cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc
Q psy11350        238 EGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTPLANL---EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ  313 (471)
Q Consensus       238 ~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  313 (471)
                      ....  -|+|++|+| |.+||++|+-|+.+++|.....-   -.....-|++++|.|+|++.++|+.+|.+++|+....+
T Consensus       407 ~Hnd--fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  407 SHND--FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             ecCC--eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence            8766  899999999 57899999999998887654321   11123469999999999999999999999999998877


Q ss_pred             EEEEeeC--C------CCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc--CEEEEEEcCCCCEEEEE
Q psy11350        314 EVLHQEG--H------GKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK--SVFSVDFSPDGYHLATG  382 (471)
Q Consensus       314 ~~~~~~~--~------~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~  382 (471)
                      ......-  |      ...|+.+.|.| +...|++.+.|..|+|||.++..++..|+|+..  .-....|+.||++|+++
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            6654321  1      23799999998 444677788999999999998889988887543  34566899999999999


Q ss_pred             eCCCcEEEEECCCcc
Q psy11350        383 SEDNAVKIWDLRKRR  397 (471)
Q Consensus       383 s~dg~i~iwd~~~~~  397 (471)
                      +.|..|+||++....
T Consensus       565 seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  565 SEDSWVYIWKNDSFN  579 (712)
T ss_pred             ecCceEEEEeCCCCc
Confidence            999999999985443

>KOG0645|consensus

Probab=99.98  E-value=3.1e-30  Score=217.35  Aligned_cols=256  Identities=26%  Similarity=0.471  Sum_probs=209.5

Q ss_pred             cchhhhhhHHHHhhccccceeee-eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceEEEeecCCCCEEEEE
Q psy11350        125 EATRTARNQELQKHLTSLSIYCS-QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIE  201 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~  201 (471)
                      ..++.++++.... ...+..... ..+|++.|.+++|+|.|++||+|+.|.++.||.-..  .+++.++.||...|.+++
T Consensus        34 g~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va  112 (312)
T KOG0645|consen   34 GTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA  112 (312)
T ss_pred             cCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence            3455556665543 222333322 248999999999999999999999999999998653  478889999999999999


Q ss_pred             EeeCCCCCCccEEEEEeCCCcEEEEeCCCC---cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec--------c
Q psy11350        202 FHPLPSEGAVCSLASCAQDGSVKLWSLDKD---TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD--------T  270 (471)
Q Consensus       202 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~--------~  270 (471)
                      |++++.     +||+|+.|..|-||.+..+   .+...+..|.. .|..+.|+|....|++++.|.+++++        .
T Consensus       113 ws~sG~-----~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~  186 (312)
T KOG0645|consen  113 WSASGN-----YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE  186 (312)
T ss_pred             EcCCCC-----EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence            999998     8999999999999998754   46677888887 89999999999999999999998873        3


Q ss_pred             ccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        271 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       271 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      ...++.+|. ..|.+++|+|.|..|++++.|++++||-..+.-    -.-|..+++.+.|.  ...|++++.|+.|++|.
T Consensus       187 c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  187 CVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             EEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence            467788884 489999999999999999999999999866321    12377899999998  45899999999999997


Q ss_pred             CCCC------eeEE-EecccCcCEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q psy11350        351 LRTG------RCIM-FLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       351 ~~~~------~~~~-~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~  394 (471)
                      -...      +.+. .-..|...|++++|.|. ...|++|++||.|++|.+.
T Consensus       260 ~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  260 ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            5532      1111 23468889999999994 7889999999999999875

>KOG0275|consensus

Probab=99.98  E-value=1.8e-31  Score=229.92  Aligned_cols=254  Identities=17%  Similarity=0.261  Sum_probs=219.9

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe--------ecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF--------RGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      .-+|...-+.|..|||||+||++|+.||.|.+||..+|+....+        -.+..+|.|++|+.+..     .+++|+
T Consensus       208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-----MlAsGs  282 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-----MLASGS  282 (508)
T ss_pred             eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-----HhhccC
Confidence            34577888999999999999999999999999999998876543        35788999999999988     799999


Q ss_pred             CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-----ccccccccCCCCcceEEEEECCCCC
Q psy11350        219 QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      .||.|++|.+.+|.++..|...+...|+++.|+.|+..+++++.|.++++     ......+.+| ...|+...|.++|.
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG~  361 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDGH  361 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCCC
Confidence            99999999999999999998444449999999999999999999999887     4567788899 55799999999999


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeeC--CCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecc---cCcCE
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEG---HLKSV  367 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---h~~~v  367 (471)
                      ++++++.||+|++|+..+.+++.++..  ...+|+++-.-| +...++++...++|+|.++ .|+.+.++..   ..+..
T Consensus       362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF  440 (508)
T KOG0275|consen  362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF  440 (508)
T ss_pred             eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence            999999999999999999999888764  456788888877 5678899999999999997 5677777753   23556


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        368 FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       368 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      .+.+.+|.|.++++.+.|+.++.|.+.+|++-.++..+..
T Consensus       441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk  480 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK  480 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence            7778999999999999999999999999998887765433

>KOG0296|consensus

Probab=99.98  E-value=2.1e-30  Score=226.84  Aligned_cols=243  Identities=21%  Similarity=0.291  Sum_probs=206.5

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.||+..|+++.||.||.+||||+.+|.|.||...++.....+...-..|.=+.|+|.+.     +|+.|+.||.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-----illAG~~DGsv  172 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-----ILLAGSTDGSV  172 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc-----EEEeecCCCcE
Confidence            5567789999999999999999999999999999999999998888876667788899999887     89999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-----ccc---------------------C
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-----NLE---------------------G  277 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-----~~~---------------------~  277 (471)
                      .+|.+.++...+.+.+|.. ++++-.|.|+|+.++++..|+++++|.+..     .+.                     +
T Consensus       173 Wmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g  251 (399)
T KOG0296|consen  173 WMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG  251 (399)
T ss_pred             EEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence            9999999888888998876 999999999999999999999977653311     111                     0


Q ss_pred             C-----------------------------CCcceEEEEECC---CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCe
Q psy11350        278 H-----------------------------EPFRVSRIKFHP---SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPV  325 (471)
Q Consensus       278 ~-----------------------------~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  325 (471)
                      .                             ....+.++.+.|   .-.+.|+|+-||+|.|||+...+. +..-.|..+|
T Consensus       252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V  330 (399)
T KOG0296|consen  252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHICEHEDGV  330 (399)
T ss_pred             cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-heeccCCCce
Confidence            0                             000122333333   335788999999999999987654 4445588999


Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        326 YCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       326 ~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +.+.|.+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+++.++|+|.|++.+||+..
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999998 6799999999999999999999999999999999999999999999999999999999874

>KOG0299|consensus

Probab=99.98  E-value=1.7e-30  Score=233.95  Aligned_cols=270  Identities=20%  Similarity=0.250  Sum_probs=216.4

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE----E-------------e-ecCCCCEEEEEEeeCC
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ----T-------------F-RGHDCNVGAIEFHPLP  206 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~----~-------------~-~~h~~~v~~l~~~~~~  206 (471)
                      +.....|..+|.|++++|+++++++++.+|+|.-|++.+++...    .             - ++|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            45566899999999999999999999999999999998776331    1             1 2688889999999999


Q ss_pred             CCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEE
Q psy11350        207 SEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRI  286 (471)
Q Consensus       207 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l  286 (471)
                      .     +|++|+.|..|.||+.++.+.++.+.+|.+                                       .|.++
T Consensus       215 k-----ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~---------------------------------------~V~~L  250 (479)
T KOG0299|consen  215 K-----YLATGGRDRHVQIWDCDTLEHVKVFKGHRG---------------------------------------AVSSL  250 (479)
T ss_pred             c-----EEEecCCCceEEEecCcccchhhccccccc---------------------------------------ceeee
Confidence            9     899999999999999999999888887765                                       68899


Q ss_pred             EECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC
Q psy11350        287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS  366 (471)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~  366 (471)
                      +|-.....+++++.|++|++|+++....+.++.+|...|.++....-++.+.+|+.|+++++|++..... ..+.+|.+.
T Consensus       251 ~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~s  329 (479)
T KOG0299|consen  251 AFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGS  329 (479)
T ss_pred             eeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCC
Confidence            9988888999999999999999999999999999999999999998888988999999999999955544 367789999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCcc---------ceeec------------cccceeeeec
Q psy11350        367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSI---------GVTSL------------LTDLYIDVLE  425 (471)
Q Consensus       367 v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~------------~~d~~~~~~~  425 (471)
                      +.|++|..+ .+|++||++|.|.+|++.+.+++.+....++-..         .+.++            +.++.+++|.
T Consensus       330 idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  330 IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            999999855 7899999999999999999999987765554221         12222            2333333333


Q ss_pred             ccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEe
Q psy11350        426 SLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMV  467 (471)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~  467 (471)
                      ....-.       .-..+..+++..=++.|+|+++|+.+.+.
T Consensus       409 i~~g~r-------~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  409 IEDGLR-------AINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ecCCcc-------ccceeeecccccEEEEEEEccCCCEEEEe
Confidence            332210       01123344554558999999999955544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.6e-29  Score=233.91  Aligned_cols=241  Identities=35%  Similarity=0.614  Sum_probs=214.9

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...+.+|...+.++.|+|++++|++++.+|.|++|++.+++.+..+..|...|.++.|+|++.     ++++++.+|.|.
T Consensus        44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~i~  118 (289)
T cd00200          44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-----ILSSSSRDKTIK  118 (289)
T ss_pred             EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC-----EEEEecCCCeEE
Confidence            345668999999999999999999999999999999999888889999999999999999865     677777799999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      +||+.+++....+..+.. .+.++.|+|++.++++++.++.+.++..     ...+..+ ...+.++.|+|+++.+++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         119 VWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             EEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEec
Confidence            999998888888886655 8999999999999999887888666432     3334444 45799999999999999999


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      .++.|++||++.++.+..+..|...+.+++|+|++.++++++.+|.|++||+.+++.+..+..|...|.+++|+|++.+|
T Consensus       197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL  276 (289)
T ss_pred             CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEE
Confidence            99999999999988888888899999999999998899988889999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEE
Q psy11350        380 ATGSEDNAVKIWD  392 (471)
Q Consensus       380 ~s~s~dg~i~iwd  392 (471)
                      ++++.||.|++|+
T Consensus       277 ~~~~~d~~i~iw~  289 (289)
T cd00200         277 ASGSADGTIRIWD  289 (289)
T ss_pred             EEecCCCeEEecC
Confidence            9999999999996

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=7.5e-30  Score=249.03  Aligned_cols=214  Identities=24%  Similarity=0.379  Sum_probs=179.2

Q ss_pred             eeecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        147 SQVGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      .+.||+++|++++|+| ++++|++|+.||+|++||+.++       +.+..+.+|...|.+++|+|.+.+    +|++++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~----iLaSgs  145 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN----VLASAG  145 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC----EEEEEe
Confidence            4679999999999999 8899999999999999999765       356788899999999999998644    799999


Q ss_pred             CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        219 QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      .|++|+|||+.+++.+..+..|..                                       .|.+++|+|++.+|+++
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h~~---------------------------------------~V~sla~spdG~lLatg  186 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCHSD---------------------------------------QITSLEWNLDGSLLCTT  186 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCC---------------------------------------ceEEEEEECCCCEEEEe
Confidence            999999999998877666655443                                       69999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCC-eEEEEEeCCCCEEEEEe----CCCeEEEEeCCCCe-eEEEeccc-CcCEEEEE
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKP-VYCMSFQGDGSVVATGG----LDAFGRVWDLRTGR-CIMFLEGH-LKSVFSVD  371 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~t~~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~~~  371 (471)
                      +.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++.. ++.....+ ...+....
T Consensus       187 s~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~  266 (493)
T PTZ00421        187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPF  266 (493)
T ss_pred             cCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEE
Confidence            99999999999999999889888765 45678899877777654    47899999998764 44444333 34566678


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCccchheec
Q psy11350        372 FSPDGYHLATGS-EDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       372 ~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~  403 (471)
                      |++++.+|++|+ .|+.|++||+.+++++....
T Consensus       267 ~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        267 FDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            999999999887 59999999999998776543

>KOG0281|consensus

Probab=99.97  E-value=1.2e-31  Score=233.03  Aligned_cols=235  Identities=24%  Similarity=0.461  Sum_probs=203.4

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+.||++.|.|+.|.  .+.|++|+.|.+|+|||+++|+++.++-+|...|..+.|+..       ++++++.|.++.+
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-------~mvtcSkDrsiaV  301 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-------YMVTCSKDRSIAV  301 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-------EEEEecCCceeEE
Confidence            3567999999999995  469999999999999999999999999999999999999864       7999999999999


Q ss_pred             EeCCCCc---ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        226 WSLDKDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       226 wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      ||+....   +...+.+|.. .|+.+.|+..  +|++++.|.++++|.     .+.++.+| ...|.|+.+  .++++++
T Consensus       302 Wdm~sps~it~rrVLvGHrA-aVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~rlvVS  375 (499)
T KOG0281|consen  302 WDMASPTDITLRRVLVGHRA-AVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RDRLVVS  375 (499)
T ss_pred             EeccCchHHHHHHHHhhhhh-heeeeccccc--eEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cCeEEEe
Confidence            9997664   3345667766 8999988765  999999999977764     35677888 446777776  5889999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe---------eEEEecccCcCEE
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR---------CIMFLEGHLKSVF  368 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~  368 (471)
                      |+.|.+|++||+..|.+++.++||..-|.++.|  |.+.+++|+.||.|+|||+..+.         |+.++..|.+.|.
T Consensus       376 GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF  453 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF  453 (499)
T ss_pred             cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence            999999999999999999999999999999999  56789999999999999998763         4456667999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      .+.|  |...+++++.|.+|.|||+..+-+-
T Consensus       454 rLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  454 RLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999  5678999999999999999877544

>KOG0276|consensus

Probab=99.97  E-value=4.7e-30  Score=238.79  Aligned_cols=244  Identities=22%  Similarity=0.350  Sum_probs=217.2

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .--.-||.++.|-+..+.+++|+.|..|+||+..+++.+..|..|...|.+|+.+|..+     +++|++.|-+|++||.
T Consensus        52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P-----~vLtsSDDm~iKlW~w  126 (794)
T KOG0276|consen   52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP-----YVLTSSDDMTIKLWDW  126 (794)
T ss_pred             eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC-----eEEecCCccEEEEeec
Confidence            34567999999999999999999999999999999999999999999999999999998     7999999999999999


Q ss_pred             CCC-cceeeecCCCCcceEEEEECCC-CCEEEEEeCCCeEEec-----cccccccCCCCcceEEEEECCCC--CEEEEEe
Q psy11350        229 DKD-TPLANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPSG--RFLGTCC  299 (471)
Q Consensus       229 ~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~  299 (471)
                      +.+ .+..+|.+|.. .|.+++|.|. .+.+++++.|+++++|     .+..++.+|. ..|.|+.|-+-|  .+|++|+
T Consensus       127 e~~wa~~qtfeGH~H-yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpylIsga  204 (794)
T KOG0276|consen  127 ENEWACEQTFEGHEH-YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPYLISGA  204 (794)
T ss_pred             cCceeeeeEEcCcce-EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc-cCcceEEeccCCCcceEEecC
Confidence            765 57788999987 8999999995 5689999999997765     3566788884 479999998844  6999999


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      .|.+|+|||.++..++.++.||...|..+.|+|.-.++++|+.||+++||+..+-+...++.-....|.|++-.+.++.+
T Consensus       205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i  284 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKI  284 (794)
T ss_pred             CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999888888887777899999999988889


Q ss_pred             EEEeCCCcEEEEECCCccchh
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      +.|.++|.|. ..+-...+..
T Consensus       285 ~vG~Deg~i~-v~lgreeP~v  304 (794)
T KOG0276|consen  285 AVGFDEGSVT-VKLGREEPAV  304 (794)
T ss_pred             EEeccCCcEE-EEccCCCCce
Confidence            9998888774 4565555443

>KOG0640|consensus

Probab=99.97  E-value=1.8e-30  Score=222.57  Aligned_cols=218  Identities=28%  Similarity=0.422  Sum_probs=188.9

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC------------------CceEEEeecCCCCEEEEEEeeCCC
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE------------------CELVQTFRGHDCNVGAIEFHPLPS  207 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~  207 (471)
                      +.+..|++++.+.+|||||.++|+|+.|..|+|.|++.                  --.++++..|..+|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            34567999999999999999999999999999999861                  135678889999999999999988


Q ss_pred             CCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEE
Q psy11350        208 EGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIK  287 (471)
Q Consensus       208 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~  287 (471)
                           +|++|+.|++|+++|+......+.++...+                                     ..+|.++.
T Consensus       186 -----ILiS~srD~tvKlFDfsK~saKrA~K~~qd-------------------------------------~~~vrsiS  223 (430)
T KOG0640|consen  186 -----ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-------------------------------------TEPVRSIS  223 (430)
T ss_pred             -----eEEeccCCCeEEEEecccHHHHHHHHHhhc-------------------------------------cceeeeEe
Confidence                 899999999999999865543333322111                                     33699999


Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCCcEEEEe---eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-cc
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ---EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GH  363 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h  363 (471)
                      |+|.|.+|++|....++++||+.+.++...-   .+|.+.|+++.+++.+++.++|+.||.|+|||--+++|+.++. .|
T Consensus       224 fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH  303 (430)
T KOG0640|consen  224 FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH  303 (430)
T ss_pred             ecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc
Confidence            9999999999999999999999998876553   4689999999999999999999999999999999999998875 45


Q ss_pred             Cc-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        364 LK-SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       364 ~~-~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .+ .|.+..|..+|+|+++.+.|..+++|.+.++++++.....
T Consensus       304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence            54 6999999999999999999999999999999999877654

>KOG0292|consensus

Probab=99.97  E-value=3.9e-29  Score=241.01  Aligned_cols=303  Identities=20%  Similarity=0.274  Sum_probs=242.1

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+.+|.+||..++|+|++.++++|+.|-.|+||+..+.+++.++.+|-..|..+.|++.-+     .++|+|.|.+|+||
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP-----WIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP-----WILSASDDQTIRIW  120 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc-----eEEEccCCCeEEEE
Confidence            3457999999999999999999999999999999999999999999999999999999988     69999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----------------------------------c
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----------------------------------L  272 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----------------------------------~  272 (471)
                      +..+++++..+.+|.. .|.|.+|+|....+++++.|.++++|..                                  .
T Consensus       121 Nwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  121 NWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             eccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence            9999999999999998 8999999999999999999999666421                                  1


Q ss_pred             ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc--EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        273 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       273 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      ..+.+| ...|+-++|+|.-..|++|+.|..|++|-+...+  .+.+..+|.+.|.++-|+|...++++.|.|++|+|||
T Consensus       200 ~VLEGH-DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  200 HVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eeeccc-ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            123455 4468999999999999999999999999987654  3566789999999999999999999999999999999


Q ss_pred             CCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCC
Q psy11350        351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPG  430 (471)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  430 (471)
                      +...+.+++++...+..+.++-+|..+++++| .|+-+.||.+..-++..-+.   .+   .+-...+.+++.++.....
T Consensus       279 m~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErpa~~v~---~n---~LfYvkd~~i~~~d~~t~~  351 (1202)
T KOG0292|consen  279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERPAYAVN---GN---GLFYVKDRFIRSYDLRTQK  351 (1202)
T ss_pred             cccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCceEEEc---CC---EEEEEccceEEeeeccccc
Confidence            99999999998778899999999998877766 66667789988666554322   11   1112235666666554432


Q ss_pred             cccccchhhhcccccceeeecccceeeeecCCeEEEee
Q psy11350        431 IGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~  468 (471)
                      ...+.+--.     +-+.......|.++|--...-+|+
T Consensus       352 d~~v~~lr~-----~g~~~~~~~smsYNpae~~vlics  384 (1202)
T KOG0292|consen  352 DTAVASLRR-----PGTLWQPPRSLSYNPAENAVLICS  384 (1202)
T ss_pred             cceeEeccC-----CCcccCCcceeeeccccCeEEEEe
Confidence            222211111     001223345566666666555554

>KOG0278|consensus

Probab=99.97  E-value=2.5e-30  Score=215.42  Aligned_cols=243  Identities=28%  Similarity=0.389  Sum_probs=209.7

Q ss_pred             eecCCcCeEEEEEe---cCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        148 QVGDTRPISYCSFS---PDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       148 ~~gh~~~V~~~~~s---~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      -.||++||..++||   |+|-+|++++.||.-.+-+-++|.-+.+|.+|.+.|+....+.+..     ..++++.|-+-+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~-----~aasaaadftak   84 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT-----RAASAAADFTAK   84 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh-----hhhhhcccchhh
Confidence            35999999999998   5888999999999999999999999999999999999999887765     578999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec------cccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD------TPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      +||.-+|..+..|....  .|..++|+.|.+++++|+.+..+++.      .+...+.+| ++.|..+.|....+.|+++
T Consensus        85 vw~a~tgdelhsf~hkh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-tg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSFEHKH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-TGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhhh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-CCcceeEEEeccCceEEee
Confidence            99999999999988666  79999999999999999999986662      344556777 6689999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCC----------------------------------------eEEEEEeCCCCEEE
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKP----------------------------------------VYCMSFQGDGSVVA  338 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------------------v~~~~~s~d~~~l~  338 (471)
                      +.|++|++||.+++..+..+.- ..+                                        |.+..++|+...++
T Consensus       162 add~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV  240 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence            9999999999999987766531 112                                        33455567777778


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEe-cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFL-EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      +|+.|..++.||..++..+..+ ++|.++|.|+.|+|+|...++||.||+|++|....++..
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            8888888888888888888775 899999999999999999999999999999998877654

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.9e-28  Score=240.17  Aligned_cols=210  Identities=17%  Similarity=0.306  Sum_probs=171.1

Q ss_pred             eeeeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCc--------eEEEeecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        144 IYCSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECE--------LVQTFRGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      ....+.||.++|.+++|+|+ +.+||+|+.||+|+|||+.++.        ++..+.+|...|.+++|+|++..    +|
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~----iL  141 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY----IM  141 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe----EE
Confidence            45677899999999999997 7899999999999999997642        34567899999999999998864    56


Q ss_pred             EEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE
Q psy11350        215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      ++++.|++|+|||+.+++....+..                                        ...|.+++|+|+|.+
T Consensus       142 aSgS~DgtIrIWDl~tg~~~~~i~~----------------------------------------~~~V~SlswspdG~l  181 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKRAFQINM----------------------------------------PKKLSSLKWNIKGNL  181 (568)
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEec----------------------------------------CCcEEEEEECCCCCE
Confidence            8999999999999988865544431                                        225899999999999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEE-----EEeCCCCEEEEEeCCC----eEEEEeCCC-CeeEEEec--c
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM-----SFQGDGSVVATGGLDA----FGRVWDLRT-GRCIMFLE--G  362 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-----~~s~d~~~l~t~~~dg----~i~iwd~~~-~~~~~~~~--~  362 (471)
                      |++++.|+.|+|||+++++.+..+.+|.+.+.+.     .|++++.+|++++.|+    .|+|||++. ++++..+.  .
T Consensus       182 Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~  261 (568)
T PTZ00420        182 LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN  261 (568)
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence            9999999999999999999999999998765433     3458889999988774    799999995 55665543  3


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       363 h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +.+.+......++|.++++|+.|++|++|++..+.
T Consensus       262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            33444445455678999999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2e-28  Score=257.51  Aligned_cols=234  Identities=23%  Similarity=0.367  Sum_probs=201.0

Q ss_pred             CCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeC-CCCCCccEEEEEeCCCcEEEEeC
Q psy11350        151 DTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL-PSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       151 h~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      +...|.+++|+|. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+|. +.     +|++|+.||+|++||+
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~-----~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT-----LLASGSDDGSVKLWSI  605 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCC-----EEEEEcCCCEEEEEEC
Confidence            4568899999874 789999999999999999999999999999999999999974 44     7999999999999999


Q ss_pred             CCCcceeeecCCCCcceEEEEEC-CCCCEEEEEeCCCeEEeccc------cccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFH-PSGRFLGTCCWDHSWRLDTP------LANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s-~~~~~i~~~~~d~~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      .++..+..+..+.  .+.++.|+ ++|.++++|+.|+.+.+|..      ...+.+| ...|.++.|. ++.+|++++.|
T Consensus       606 ~~~~~~~~~~~~~--~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~~~lvs~s~D  681 (793)
T PLN00181        606 NQGVSIGTIKTKA--NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DSSTLVSSSTD  681 (793)
T ss_pred             CCCcEEEEEecCC--CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CCCEEEEEECC
Confidence            9998888877543  78999994 57999999999999777543      2334555 5579999997 67899999999


Q ss_pred             CeEEEEECCCC------cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe-------------cc
Q psy11350        302 HSWRLWDLNQG------QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL-------------EG  362 (471)
Q Consensus       302 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~-------------~~  362 (471)
                      ++|++||+..+      .++..+.+|...+.+++|+|++.+|++|+.|+.|++|+.....++..+             ..
T Consensus       682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~  761 (793)
T PLN00181        682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD  761 (793)
T ss_pred             CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence            99999999743      567889999999999999999999999999999999998766544322             23


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       363 h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      |...|.+++|+|++.+|++|+.||.|+||++
T Consensus       762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            4567999999999999999999999999996

>KOG0289|consensus

Probab=99.97  E-value=1.9e-28  Score=219.00  Aligned_cols=272  Identities=23%  Similarity=0.355  Sum_probs=216.6

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ...+.++...|....+++|+.|..+.++|.+..+.+..|+||...|+.+.++|+..     .+++++.|-.|+||.....
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~-----~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD-----TVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh-----heeecCCcceEEeeccccc
Confidence            45788888888878999999999999999999999999999999999999999987     6999999999999998665


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCC
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  311 (471)
                      ........|                                       ..+|+.+..+|.|.||++++.||++...|+++
T Consensus       294 s~~~~~~~h---------------------------------------~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~  334 (506)
T KOG0289|consen  294 SEPTSSRPH---------------------------------------EEPVTGLSLHPTGEYLLSASNDGTWAFSDISS  334 (506)
T ss_pred             cCccccccc---------------------------------------cccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence            544333333                                       33799999999999999999999999999999


Q ss_pred             CcEEEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEE
Q psy11350        312 GQEVLHQEG--HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       312 ~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~  389 (471)
                      +..+.....  ..-.+++.+|+|||.++.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|.+|+++++|+.|+
T Consensus       335 g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~  414 (506)
T KOG0289|consen  335 GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVK  414 (506)
T ss_pred             CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEE
Confidence            987766543  335689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCccchheecccCCCccceeeccccceeeeecccCCCccc-ccchhhhccccccee----eecccceeeeecCCeE
Q psy11350        390 IWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGN-IISSALKEQVEPIPL----LLDIQKLTFKFDSDLH  464 (471)
Q Consensus       390 iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~l~fs~dg~~l  464 (471)
                      +||+++-+..+++......  .+.++..|..-.++......... .+....+ ....+..    ....+.+.|.-.-++|
T Consensus       415 lwDLRKl~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l  491 (506)
T KOG0289|consen  415 LWDLRKLKNFKTIQLDEKK--EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYL  491 (506)
T ss_pred             EEEehhhcccceeeccccc--cceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhcccccceeeecccceEE
Confidence            9999999998888755443  34444455444444433222111 1111111 1112221    1234667788888888


Q ss_pred             EEeecC
Q psy11350        465 AMVLNQ  470 (471)
Q Consensus       465 A~~~~~  470 (471)
                      |.++++
T Consensus       492 ~s~smd  497 (506)
T KOG0289|consen  492 ASTSMD  497 (506)
T ss_pred             eeccch
Confidence            888765

>KOG0285|consensus

Probab=99.97  E-value=3.2e-29  Score=218.83  Aligned_cols=277  Identities=22%  Similarity=0.232  Sum_probs=225.8

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  264 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~  264 (471)
                      +..+.+.+|.+.|.|+++.|.+.     .|++|+.|++|+|||+.+++...++.+|.. .|..+++|+...|+++++.|+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~-----wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNE-----WFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCce-----eEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCC
Confidence            45567789999999999999987     799999999999999999999999999987 899999999999999999999


Q ss_pred             eEEec-----cccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE
Q psy11350        265 SWRLD-----TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       265 ~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  339 (471)
                      .+..|     ..++.+.+| -..|.+++.+|.-..|++|+.|.++++||+++...+..+.||..+|.++.+.|-...+++
T Consensus       216 ~VKCwDLe~nkvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             eeEEEechhhhhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence            85554     345667888 447999999999999999999999999999999999999999999999999997778999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCcc--------c
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSI--------G  411 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~  411 (471)
                      |+.|++|++||++.|+...++..|...|.+++.+|....||+++.| .|+-|++..|..++.+..+.....        .
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v  373 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV  373 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCce
Confidence            9999999999999999999999999999999999999999999887 689999999999887554433221        2


Q ss_pred             eeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeecCC
Q psy11350        412 VTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK  471 (471)
Q Consensus       412 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~~  471 (471)
                      .++...++.+.+|+.-++......  ....++-.+.....|...+|...|..|..+..+|
T Consensus       374 ~~~G~dng~~~fwdwksg~nyQ~~--~t~vqpGSl~sEagI~as~fDktg~rlit~eadK  431 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWDWKSGHNYQRG--QTIVQPGSLESEAGIFASCFDKTGSRLITGEADK  431 (460)
T ss_pred             EEEcCCceEEEEEecCcCcccccc--cccccCCccccccceeEEeecccCceEEeccCCc
Confidence            223333344555554333211111  1122223334445667778888888888877664

>KOG0274|consensus

Probab=99.96  E-value=4e-28  Score=237.15  Aligned_cols=245  Identities=23%  Similarity=0.420  Sum_probs=220.6

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.||.+.|.+++|..-+.+|++|+.|.++++||..+|.+..++.+|.+.|.++...+.       ++++|+.|.
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-------~~~sgs~D~  311 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-------LLVSGSRDN  311 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-------eEeeccCCc
Confidence            4445558899999999999887899999999999999999999999999999999999988765       588899999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec-----cccccccCCCCcceEEEEECCCCCEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      +|++|++.++.++..+.+|.. +|.++..+  +.++++|+.|+++.+|     ..+..+.+| ...|.++.+.+. ..++
T Consensus       312 tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-~~~~  386 (537)
T KOG0274|consen  312 TVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-NRLL  386 (537)
T ss_pred             eEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-ceEE
Confidence            999999999999999998666 99999998  9999999999986665     456678887 668999988766 8999


Q ss_pred             EEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc-cCcCEEEEEEcC
Q psy11350        297 TCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG-HLKSVFSVDFSP  374 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp  374 (471)
                      +|+.|++|++||+++. +++..+.+|..-+..+.+  .+++|++++.|+.|++||..+++++.++.+ |...|..+++. 
T Consensus       387 Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-  463 (537)
T KOG0274|consen  387 SGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-  463 (537)
T ss_pred             eeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-
Confidence            9999999999999999 999999999999877665  577999999999999999999999999998 67899999886 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                       ...+++++.||++++||+++++++..+
T Consensus       464 -~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 -KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             -cceEEEEecCCeeEEEecccCchhhhh
Confidence             467889999999999999999998866

>KOG1446|consensus

Probab=99.96  E-value=7.8e-27  Score=201.53  Aligned_cols=256  Identities=18%  Similarity=0.209  Sum_probs=214.5

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC--CCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ--DGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~i  225 (471)
                      +..-.+.|+++.|+++|.+|++++.|.+++|||..+++.++++..++-.|..++|.....     .++.++.  |.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-----~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-----TVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-----eEEEccCCCCCceEE
Confidence            334578999999999999999999999999999999999999998888899999987776     3555555  899999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---cccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      .++.+++.++.|.+|.. .|.++..+|-+..+++++.|+++++|....   .-.-+ ...-...+|.|+|-++|++....
T Consensus        85 Lsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-cCCCcceeECCCCcEEEEecCCC
Confidence            99999999999999998 999999999999999999999977765431   11111 11234689999999999999888


Q ss_pred             eEEEEECCCC--cEEEEee---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCE---EEEEEcC
Q psy11350        303 SWRLWDLNQG--QEVLHQE---GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV---FSVDFSP  374 (471)
Q Consensus       303 ~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~~~~sp  374 (471)
                      .|++||++..  .+..++.   +.....+.+.|||||++|+.++..+.+++.|.-+|..+.++.++...-   ....|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            9999999864  2333332   346778999999999999999999999999999999888888765432   5778999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheecccCCCcc
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSI  410 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  410 (471)
                      |++++++|+.||+|.+|++++++.+..+..+...+.
T Consensus       243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~  278 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV  278 (311)
T ss_pred             CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc
Confidence            999999999999999999999999887776544333

>KOG0305|consensus

Probab=99.96  E-value=3.9e-28  Score=228.64  Aligned_cols=235  Identities=23%  Similarity=0.419  Sum_probs=208.2

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|.+++|...       .+.+|+.|+.|..+|++.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-------~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-------VLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc-------eEEEecCCCcEEEEEEec
Confidence            78999999999999999999999999999999999999998 9999999999933       689999999999999998


Q ss_pred             Ccceee-ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECC-CCCEEEEE--ecC
Q psy11350        231 DTPLAN-LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHP-SGRFLGTC--CWD  301 (471)
Q Consensus       231 ~~~~~~-~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~~d  301 (471)
                      .+.... +.+|.. .|..+.|++|+.++++|+.|+.+.+|..     ...+..| ...|.+++|+| ....||+|  +.|
T Consensus       290 ~~~~~~~~~~H~q-eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQ-EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             chhhhhhhhcccc-eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeEeeeCCCccCceEEcCCCcc
Confidence            876665 666666 9999999999999999999999877643     4455666 66899999999 56688886  468


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE--eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG--GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      +.|++||..+++.+..+. ....|.++.|++..+-|+++  ..++.|.||+..+.+.+..+.+|...|..++++|||..+
T Consensus       368 ~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i  446 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI  446 (484)
T ss_pred             cEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence            999999999999887775 46789999999988666654  457789999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCc
Q psy11350        380 ATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~  396 (471)
                      ++|+.|.++++|++-..
T Consensus       447 ~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  447 VTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEecccCcEEeccccCC
Confidence            99999999999998765

>KOG0277|consensus

Probab=99.96  E-value=1.3e-28  Score=205.70  Aligned_cols=205  Identities=25%  Similarity=0.498  Sum_probs=179.1

Q ss_pred             CCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCC-CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        151 DTRPISYCSFSPDS-QHVATASWSGLCKLWTVPE-CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       151 h~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      -...+..++|+++. +.+++++.||+++|||+.. .+++..++.|...|.++.|++....    .+++++.|++|++|+.
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~----~~ltsSWD~TiKLW~~  134 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRR----IFLTSSWDGTIKLWDP  134 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccce----eEEeeccCCceEeecC
Confidence            46788999999875 5678888899999999643 4678899999999999999998775    6888899999999999


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecCCeEEEE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLW  307 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iw  307 (471)
                      ..++.+.++.+|..                                       .|....|+| ..+.|++++.|+++++|
T Consensus       135 ~r~~Sv~Tf~gh~~---------------------------------------~Iy~a~~sp~~~nlfas~Sgd~~l~lw  175 (311)
T KOG0277|consen  135 NRPNSVQTFNGHNS---------------------------------------CIYQAAFSPHIPNLFASASGDGTLRLW  175 (311)
T ss_pred             CCCcceEeecCCcc---------------------------------------EEEEEecCCCCCCeEEEccCCceEEEE
Confidence            98888888877654                                       588888888 66799999999999999


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCC-CCEEEEEeC
Q psy11350        308 DLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPD-GYHLATGSE  384 (471)
Q Consensus       308 d~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~  384 (471)
                      |++.......+..|...+.++.|+. +...|+||+.|+.|++||+++- .++..+.+|.-.|..++|||. ...|++++.
T Consensus       176 dvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  176 DVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             EecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc
Confidence            9987655556999999999999998 7789999999999999999875 578889999999999999995 568999999


Q ss_pred             CCcEEEEECCCccc
Q psy11350        385 DNAVKIWDLRKRRL  398 (471)
Q Consensus       385 dg~i~iwd~~~~~~  398 (471)
                      |-+++|||...+..
T Consensus       256 DmT~riw~~~~~ds  269 (311)
T KOG0277|consen  256 DMTVRIWDPERQDS  269 (311)
T ss_pred             cceEEecccccchh
Confidence            99999999986543

>KOG0306|consensus

Probab=99.96  E-value=3.2e-28  Score=231.11  Aligned_cols=238  Identities=22%  Similarity=0.374  Sum_probs=212.0

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC--
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD--  229 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--  229 (471)
                      .+-+.|..|-|.++++++|..+|.+.+||+.+...+.+++.|.+.|+.++.+|++.     .+++|+.|.+|++||..  
T Consensus       412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-----g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-----GFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-----ceEEecCCcEEEEEeEEEE
Confidence            34678899999999999999999999999999999999999999999999999998     59999999999999963  


Q ss_pred             -C--CcceeeecCC------CCcceEEEEECCCCCEEEEEeCCCeEEec-----cccccccCCCCcceEEEEECCCCCEE
Q psy11350        230 -K--DTPLANLEGH------EPFRVSRIKFHPSGRFLGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       230 -~--~~~~~~~~~~------~~~~v~~~~~s~~~~~i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                       .  +...+.+..+      -...|.|+.+||||++++++--|.++.+.     .-...+.+| .-+|.||..+||++.+
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DSkli  565 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDSKLI  565 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccCCcCeE
Confidence             1  2211111111      12379999999999999999999996663     234467788 7799999999999999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ++|+.|.+|++|-+.-|.|-..+.+|...|.++.|.|...++.++|.|+.|+-||-...+.+..+.+|...|+|++.+|+
T Consensus       566 vTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~  645 (888)
T KOG0306|consen  566 VTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN  645 (888)
T ss_pred             EeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCC
Q psy11350        376 GYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~  395 (471)
                      |.+++++|.|.+|++|.-..
T Consensus       646 G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  646 GSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             CCeEEeccCCceeEeeeccC
Confidence            99999999999999998654

>KOG0288|consensus

Probab=99.96  E-value=1.4e-28  Score=218.55  Aligned_cols=248  Identities=23%  Similarity=0.280  Sum_probs=212.4

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      +..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..++|+.+.|.+++.     .+++.+.|+.+++
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~-----~~iAas~d~~~r~  245 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK-----HVIAASNDKNLRL  245 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc-----eEEeecCCCceee
Confidence            45799999999999999999999999999999987655  6778888889999999999998     6899999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc---CCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE---GHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      |++...+...++.+|.+ .|+++.|......+++|+.|.+++.|.......   ......+..|..+  ...+++|..|+
T Consensus       246 Wnvd~~r~~~TLsGHtd-kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk  322 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTD-KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK  322 (459)
T ss_pred             eeccchhhhhhhccccc-ceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence            99999999999999888 999999999888899999999866654433211   1112245556665  56788999999


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc----CcCEEEEEEcCCCCE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH----LKSVFSVDFSPDGYH  378 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~sp~~~~  378 (471)
                      +|+.||.++..+......++ .|+++..++++..|.+++.|.++.+.|+++......+...    ....+.+.|||++.|
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y  401 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY  401 (459)
T ss_pred             ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence            99999999999999888766 8999999999999999999999999999998877766532    234889999999999


Q ss_pred             EEEEeCCCcEEEEECCCccchheecc
Q psy11350        379 LATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +++||.||.|+||++.++++.+.+..
T Consensus       402 vaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  402 VAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             eeeccCCCcEEEEEccCceEEEEecc
Confidence            99999999999999999998876553

>KOG0313|consensus

Probab=99.96  E-value=1.5e-27  Score=210.06  Aligned_cols=258  Identities=24%  Similarity=0.391  Sum_probs=210.1

Q ss_pred             CcchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCC---EEEEEeCCCcEEEEeCCCCceE----EEeecCCCC
Q psy11350        124 PEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQ---HVATASWSGLCKLWTVPECELV----QTFRGHDCN  196 (471)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~---~l~tg~~dg~i~iwd~~~~~~~----~~~~~h~~~  196 (471)
                      ...++..+.|+....     ......||+++|.+++|.-...   .|++++.|.++++|.++.+...    ..-+||...
T Consensus       121 gsYDg~~riWd~~Gk-----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~  195 (423)
T KOG0313|consen  121 GSYDGTSRIWDLKGK-----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS  195 (423)
T ss_pred             eecCCeeEEEecCCc-----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence            444555566665443     3346679999999888764333   5999999999999998766432    333499999


Q ss_pred             EEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-------------------------CcceeeecCCCCcceEEEEEC
Q psy11350        197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-------------------------DTPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       197 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~~v~~~~~s  251 (471)
                      |-++...+++.     .+++|+.|.+|+||+..+                         +.++..+.+|.. +|.++.|+
T Consensus       196 V~sVsv~~sgt-----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~  269 (423)
T KOG0313|consen  196 VDSVSVDSSGT-----RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE-PVSSVVWS  269 (423)
T ss_pred             eeEEEecCCCC-----eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc-ceeeEEEc
Confidence            99999999998     799999999999999321                         135566777877 89999999


Q ss_pred             CCCCEEEEEeCCCeEEeccc---cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc---EEEEeeCCCCCe
Q psy11350        252 PSGRFLGTCCWDHSWRLDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ---EVLHQEGHGKPV  325 (471)
Q Consensus       252 ~~~~~i~~~~~d~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v  325 (471)
                      + ...+++++.|++++.|..   ........+..+.++.++|..++|++|+.|..|++||.+++.   ....+.+|...|
T Consensus       270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV  348 (423)
T KOG0313|consen  270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV  348 (423)
T ss_pred             C-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence            9 889999999999666543   222222234479999999999999999999999999998863   346788999999


Q ss_pred             EEEEEeC-CCCEEEEEeCCCeEEEEeCCCCe-eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        326 YCMSFQG-DGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       326 ~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      .++.|+| +..+|++|+.|+++++||+++.+ ++..+.+|...|.++.|. ++.++++||.|++|+|+...
T Consensus       349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9999999 56689999999999999999987 999999999999999997 56799999999999998654

>KOG0294|consensus

Probab=99.96  E-value=1.8e-27  Score=204.86  Aligned_cols=241  Identities=20%  Similarity=0.307  Sum_probs=204.7

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+..|.++|++++.  ++.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+....   ..|++|+.||.|.+|
T Consensus        38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~---shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK---SHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch---hheeeecCCCcEEEE
Confidence            45679999999998  4699999999999999999999999999999999999999987641   039999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc---ccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN---LEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      +...-.++..++.|.. .|+.++.+|.|+..++.+.|+.+++|..+.-   +........+.+.|+|.|.+|+.+..+ .
T Consensus       113 ~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~  190 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-K  190 (362)
T ss_pred             EcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-E
Confidence            9999999999999998 6999999999999999999999887765432   222222335569999999999988865 4


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEc--CCCCEEEE
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS--PDGYHLAT  381 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s--p~~~~l~s  381 (471)
                      |-+|.+.+......+.. ...+.++.|. ++..|++|+.|+.|.+||..+..++..+.+|...|-++.+-  |++.+|+|
T Consensus       191 i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence            89999988766555543 2456677776 66789999999999999999999999999999999999853  56889999


Q ss_pred             EeCCCcEEEEECCCc
Q psy11350        382 GSEDNAVKIWDLRKR  396 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~  396 (471)
                      +|.||.|+|||++..
T Consensus       269 aSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  269 ASSDGFIKVWDIDME  283 (362)
T ss_pred             eccCceEEEEEcccc
Confidence            999999999999876

>KOG1036|consensus

Probab=99.96  E-value=3.7e-27  Score=202.53  Aligned_cols=243  Identities=21%  Similarity=0.281  Sum_probs=197.1

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ....|+++.|+|.+..|++++|||++++|++........+ .|..++.+++|.+...      +++|+.||.|+.+|+.+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~------~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADEST------IVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCce------EEEeccCceEEEEEecC
Confidence            3578999999999999999999999999999887655555 4789999999999765      99999999999999987


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW  307 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw  307 (471)
                      +...... .|.. .+.++.+++....+++|++|+++.+|.+.   ..........|.++...  ++.|++|+.+..+.+|
T Consensus        85 ~~~~~ig-th~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   85 GNEDQIG-THDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIY  160 (323)
T ss_pred             Ccceeec-cCCC-ceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEE
Confidence            7654433 3333 89999999999999999999999888765   22222234468777765  7789999999999999


Q ss_pred             ECCCCcEEEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC----eeEEEecccC---------cCEEEEEE
Q psy11350        308 DLNQGQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG----RCIMFLEGHL---------KSVFSVDF  372 (471)
Q Consensus       308 d~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~~~~  372 (471)
                      |+++.......  ..-.-.+.|+++.|++.=+++++-||+|.+=.++..    +.-..|+.|.         -+|++|+|
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            99987654432  223457889999998888899999999988766654    3344566664         27999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +|--..|+||+.||.|.+||+.++|.++.+..
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhhhhhccC
Confidence            99988999999999999999999998887653

>KOG0973|consensus

Probab=99.96  E-value=8.2e-28  Score=237.98  Aligned_cols=250  Identities=23%  Similarity=0.382  Sum_probs=212.7

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC------------------CceEEEeecCCCCEEEEEEee
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE------------------CELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      ...+....|.+.|+|+.|+|||++||+|+.|+.|.||....                  .+.+..+.+|...|..++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            34567778999999999999999999999999999998762                  235678899999999999999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCC-
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGH-  278 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~-  278 (471)
                      ++.     +|++++.|++|.||+..+...+..+.+|.. .|..+.|.|-|+||++-+.|+++.+|..     ...+..+ 
T Consensus       140 ~~~-----~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  140 DDS-----LLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             Ccc-----EEEEecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            988     899999999999999999999999999988 8999999999999999999999777542     2222222 


Q ss_pred             ----CCcceEEEEECCCCCEEEEEec----CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCC-----CC----------
Q psy11350        279 ----EPFRVSRIKFHPSGRFLGTCCW----DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD-----GS----------  335 (471)
Q Consensus       279 ----~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~----------  335 (471)
                          ....+..+.|+|||.+|++...    -.++.|.+-.+.+.-..+-||..++.++.|+|.     .+          
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                1234789999999999998643    346999998888888899999999999999881     12          


Q ss_pred             --EEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        336 --VVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       336 --~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                        .+|+|+.|++|-||.....+++.... -....|..++|+|||..|+.||.||+|.+..+....+
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence              68899999999999988878776543 2456899999999999999999999999999976543

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=7.7e-27  Score=227.94  Aligned_cols=208  Identities=21%  Similarity=0.360  Sum_probs=163.4

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE-------------EEeecCCCCEEEEEEee-CCCCCCccEEEEEe
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELV-------------QTFRGHDCNVGAIEFHP-LPSEGAVCSLASCA  218 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~l~~~~-~~~~~~~~~l~s~~  218 (471)
                      ..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++.     +|++|+
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-----~LaSgS   95 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-----KLFTAS   95 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-----EEEEEe
Confidence            34555556667666666666666666665433221             24678999999999999 555     799999


Q ss_pred             CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC-CEEEE
Q psy11350        219 QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG-RFLGT  297 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~  297 (471)
                      .|++|++||+.++......                               ..+...+.+| ...|.+++|+|++ ++|++
T Consensus        96 ~DgtIkIWdi~~~~~~~~~-------------------------------~~~l~~L~gH-~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNI-------------------------------SDPIVHLQGH-TKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             CCCEEEEEecCCCcccccc-------------------------------CcceEEecCC-CCcEEEEEeCcCCCCEEEE
Confidence            9999999999765321100                               0122334455 4479999999975 69999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC-EEEEEEcCCC
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS-VFSVDFSPDG  376 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~sp~~  376 (471)
                      ++.|++|+|||+++++.+..+.+|...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+. +..+.|.+++
T Consensus       144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999765 4567899988


Q ss_pred             CEEEEEe----CCCcEEEEECCCcc
Q psy11350        377 YHLATGS----EDNAVKIWDLRKRR  397 (471)
Q Consensus       377 ~~l~s~s----~dg~i~iwd~~~~~  397 (471)
                      ..+++++    .|+.|++||+++..
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCC
Confidence            8877654    47899999998754

>KOG0772|consensus

Probab=99.96  E-value=4.4e-28  Score=221.00  Aligned_cols=247  Identities=19%  Similarity=0.321  Sum_probs=198.0

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC---------------------------CceEEE-----
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE---------------------------CELVQT-----  189 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~---------------------------~~~~~~-----  189 (471)
                      ......+.+|+..|+++++.|.|.+|++|+.|.+|++||+..                           +..+..     
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            334456789999999999999999999999999999999742                           111110     


Q ss_pred             ---------------------------eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-ceeeec---
Q psy11350        190 ---------------------------FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-PLANLE---  238 (471)
Q Consensus       190 ---------------------------~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---  238 (471)
                                                 .++|...++|.+|+|....    .+++++.||+++|||+...+ .+..++   
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~----~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE----EFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc----ceEEecCCCcEEEEecCCchhheeEEeecc
Confidence                                       1478899999999999876    79999999999999987543 233332   


Q ss_pred             -CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc--------cccCCCC-cceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        239 -GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA--------NLEGHEP-FRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       239 -~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~--------~~~~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                       +.....+++++|+++|+.|++|+.||.+.+|....        .-..|.+ ..|+||.|+++|++|++-+.|+++++||
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence             23334789999999999999999999988876311        1223322 3799999999999999999999999999


Q ss_pred             CCCCc-EEEEeeC--CCCCeEEEEEeCCCCEEEEEe------CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        309 LNQGQ-EVLHQEG--HGKPVYCMSFQGDGSVVATGG------LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       309 ~~~~~-~~~~~~~--~~~~v~~~~~s~d~~~l~t~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      ++..+ ++....+  ...+-+.++|||+.++|++|.      ..|.+.+||..+...++.+.-....|..+.|+|.-+.|
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi  472 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI  472 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence            99864 4444433  234567899999999999986      35789999999999999988788899999999988888


Q ss_pred             EEEeCCCcEEEEE
Q psy11350        380 ATGSEDNAVKIWD  392 (471)
Q Consensus       380 ~s~s~dg~i~iwd  392 (471)
                      +.|+.||+++||=
T Consensus       473 ~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  473 FAGSGDGTAHVYY  485 (641)
T ss_pred             eeecCCCceEEEE
Confidence            9999999998863

>KOG0288|consensus

Probab=99.96  E-value=1.8e-28  Score=217.99  Aligned_cols=241  Identities=23%  Similarity=0.282  Sum_probs=205.9

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      .....++.|-.++|+++.|.++++++++++.|+.+++|++...+...++.+|...|+++.|.....     .+++|+.|.
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-----~vVsgs~DR  283 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS-----RVVSGSADR  283 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc-----ceeeccccc
Confidence            456677888999999999999999999999999999999999999999999999999999988776     489999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc---ccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT---PLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      +|++||+....+..++....  .+.++..+  ...+++|..|+.+++|.   ..........+.|+++..++++..+.++
T Consensus       284 tiK~WDl~k~~C~kt~l~~S--~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss  359 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGS--QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS  359 (459)
T ss_pred             hhhhhhhhhhheeccccccc--cccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee
Confidence            99999999988877655433  34555555  67788899999977654   3333333334589999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeC----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc--CEEEEEE
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEG----HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK--SVFSVDF  372 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~  372 (471)
                      +.|.++.+.|+++.+....+..    .....+.+.|||++.|+++|+.||.|+||++.++++...+.....  .|++++|
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W  439 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW  439 (459)
T ss_pred             cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence            9999999999999877766543    234488999999999999999999999999999999888875544  4999999


Q ss_pred             cCCCCEEEEEeCCCcEEEE
Q psy11350        373 SPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iw  391 (471)
                      +|.|.+|++++.++.+.+|
T Consensus       440 ~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  440 NPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cCCCchhhcccCCcceEec
Confidence            9999999999999999999

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.3e-26  Score=227.33  Aligned_cols=246  Identities=16%  Similarity=0.232  Sum_probs=182.0

Q ss_pred             EeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc-eeeecCCCCcceEEE
Q psy11350        170 ASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP-LANLEGHEPFRVSRI  248 (471)
Q Consensus       170 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~  248 (471)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|....    +|++|+.||+|+|||+.++.. ...+.          
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~----lLASgS~DgtIrIWDi~t~~~~~~~i~----------  115 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSE----ILASGSEDLTIRVWEIPHNDESVKEIK----------  115 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCC----EEEEEeCCCeEEEEECCCCCccccccc----------
Confidence            566789999998887888899999999999999997433    799999999999999976432 11000          


Q ss_pred             EECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEE
Q psy11350        249 KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC  327 (471)
Q Consensus       249 ~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  327 (471)
                                           .+...+.+| ...|.+++|+|++.. |++++.|++|++||+++++.+..+. |...|.+
T Consensus       116 ---------------------~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~S  172 (568)
T PTZ00420        116 ---------------------DPQCILKGH-KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSS  172 (568)
T ss_pred             ---------------------cceEEeecC-CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEE
Confidence                                 111223344 457999999998875 5789999999999999998777765 6678999


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE-----EEcCCCCEEEEEeCCC----cEEEEECCC-cc
Q psy11350        328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV-----DFSPDGYHLATGSEDN----AVKIWDLRK-RR  397 (471)
Q Consensus       328 ~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~-----~~sp~~~~l~s~s~dg----~i~iwd~~~-~~  397 (471)
                      ++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+.     .|++++.+|++++.|+    .|+|||+++ ++
T Consensus       173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            9999999999999999999999999999999999998765433     3568889999988774    799999995 56


Q ss_pred             chheecccCC-----------CccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecC
Q psy11350        398 LLKWCTQLLP-----------NSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDS  461 (471)
Q Consensus       398 ~~~~~~~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg  461 (471)
                      ++..+.....           .+..+++...|..+++|....... .        .+...........++|.|+-
T Consensus       253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~--------~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-R--------KVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-E--------eecccccCCCccceEEcccc
Confidence            6655432211           133445556677777777643311 1        12222333345667777754

>KOG2096|consensus

Probab=99.96  E-value=2.5e-27  Score=204.11  Aligned_cols=292  Identities=20%  Similarity=0.253  Sum_probs=199.0

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE--EEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELV--QTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      ...++||...|++++|+.||++|||++.|++|+||++.+....  +.++  ..-+..+.+.|.|+-..    +++++-..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s----~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS----VVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce----EEEEEccC
Confidence            3467799999999999999999999999999999999764221  1111  11234678999999774    66677777


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      .++++|.+...+- .....+.      +-|                   . ...+...+...+..+-...++.+|++++.
T Consensus       155 ~~l~vyk~~K~~d-G~~~~~~------v~~-------------------D-~~~f~~kh~v~~i~iGiA~~~k~imsas~  207 (420)
T KOG2096|consen  155 NKLCVYKLVKKTD-GSGSHHF------VHI-------------------D-NLEFERKHQVDIINIGIAGNAKYIMSASL  207 (420)
T ss_pred             CEEEEEEeeeccc-CCCCccc------ccc-------------------c-ccccchhcccceEEEeecCCceEEEEecC
Confidence            8899998643221 1111000      000                   0 00111112334666777778899999999


Q ss_pred             CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC---CC-----eeEEEecccCcCEEEEEE
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR---TG-----RCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~---~~-----~~~~~~~~h~~~v~~~~~  372 (471)
                      |..|.+|+++ |+.+..+......-+..+.||+|+++++++..-.|++|.+-   .|     ..+..+.||...|..++|
T Consensus       208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF  286 (420)
T KOG2096|consen  208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF  286 (420)
T ss_pred             CCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence            9999999998 88898888888888889999999999999999999999853   22     356688999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC-------ccchheecccC---CCccceeeccccceeeeecccCCCcccccchhhhcc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRK-------RRLLKWCTQLL---PNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQ  442 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  442 (471)
                      +|+...++|.|.||+++|||++-       .+.+++...+.   .....-+.+++...+  +....+...+++.+..+..
T Consensus       287 sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~--lA~s~gs~l~~~~se~g~~  364 (420)
T KOG2096|consen  287 SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDS--LAVSFGSDLKVFASEDGKD  364 (420)
T ss_pred             CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcE--EEeecCCceEEEEcccCcc
Confidence            99999999999999999999852       23444432211   111112222222222  2222222223332222222


Q ss_pred             cccc--eeeecccceeeeecCCeEEEeecC
Q psy11350        443 VEPI--PLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       443 ~~~~--~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      ..++  .....|..|+|++||+++|.|.+.
T Consensus       365 ~~~~e~~h~~~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  365 YPELEDIHSTTISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             chhHHHhhcCceeeEEecCCCcEEeeecce
Confidence            2222  234578999999999999999875

>KOG1407|consensus

Probab=99.96  E-value=1.4e-26  Score=194.43  Aligned_cols=239  Identities=21%  Similarity=0.289  Sum_probs=208.1

Q ss_pred             eeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        146 CSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...+||++.|-.++|+|. ..+|++++.|.+|++||+..+++...+....+.| -+.|+|++.     +++.++.|..|.
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-----~~~~~~kdD~it  131 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGE-----YIAVGNKDDRIT  131 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCC-----EEEEecCcccEE
Confidence            345699999999999875 5689999999999999999999998887655555 789999998     799999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-----ccccccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      +.|.++.+.....+...  .+..+.|+.++.+++.....|.+.+     -.++..+..| +....||.|+|+|++||+|+
T Consensus       132 ~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-~snCicI~f~p~GryfA~Gs  208 (313)
T KOG1407|consen  132 FIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-PSNCICIEFDPDGRYFATGS  208 (313)
T ss_pred             EEEecccceeehhcccc--eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccC-CcceEEEEECCCCceEeecc
Confidence            99998887777665544  6888999988888888888788666     3567778888 56788999999999999999


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      .|..+.+||++..-+++.+..+.-||..+.||.||++||+|+.|..|-|=++.+|..+..++ +.++...++|+|...+|
T Consensus       209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LL  287 (313)
T KOG1407|consen  209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLL  287 (313)
T ss_pred             ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999998887 88999999999999999


Q ss_pred             EEEeCC---------CcEEEEECC
Q psy11350        380 ATGSED---------NAVKIWDLR  394 (471)
Q Consensus       380 ~s~s~d---------g~i~iwd~~  394 (471)
                      |-+++|         |+|++|-+.
T Consensus       288 AyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  288 AYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eEEecCCCCccccccceeEEecCC
Confidence            887765         456665543

>KOG0268|consensus

Probab=99.96  E-value=2.3e-28  Score=213.85  Aligned_cols=276  Identities=23%  Similarity=0.353  Sum_probs=225.3

Q ss_pred             cceeeeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      -+..+.+.||...|.|++=+|.. ..+|+|+.||.|+|||+.+.++..++..|.+.|..|++.. +      .+++++.|
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~------~~~tvgdD  128 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T------SFFTVGDD  128 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-c------ceEEecCC
Confidence            35567788999999999999987 7799999999999999999999999999999999999988 2      48999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe-EEe--ccccccccCCCCcceEEEEECCCC-CEEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WRL--DTPLANLEGHEPFRVSRIKFHPSG-RFLG  296 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-~~~--~~~~~~~~~~~~~~v~~l~~~~~~-~~l~  296 (471)
                      .+|+.|.++. .+++++.+..  .+..+.-+..+..+++|+.+-. |+.  ..|+..+... ...|.++.|+|.. ..|+
T Consensus       129 KtvK~wk~~~-~p~~tilg~s--~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  129 KTVKQWKIDG-PPLHTILGKS--VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILA  204 (433)
T ss_pred             cceeeeeccC-Ccceeeeccc--cccccccccccccccccCceeeecccccCCccceeecC-CCceeEEecCCCcchhee
Confidence            9999999854 4666665554  5777777777888888887644 544  3455555555 3469999999954 4677


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCC
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ++..|+.|.+||++++.++..+. ....-+.|+|+|.+-.+++|+.|..++.||++.- .++..+.+|...|.+++|||.
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt  283 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT  283 (433)
T ss_pred             eeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence            88899999999999998887654 2345578999998888999999999999999875 677888999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCccchheec----------ccCCCccceeeccccceeeeecccCC
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRLLKWCT----------QLLPNSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      |+-|++||.|.+|+||..+.+.......          ..+.....+++.+.|+.+++|.....
T Consensus       284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            9999999999999999998775443222          22344567778888888888887654

>KOG0973|consensus

Probab=99.96  E-value=7.2e-27  Score=231.31  Aligned_cols=247  Identities=23%  Similarity=0.318  Sum_probs=206.9

Q ss_pred             CCcCeEEEEEecCCCEEEEEe--CCCcEEEEeCCC------------CceEEEeecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATAS--WSGLCKLWTVPE------------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      +...|.+++.+|||..+|||+  .||.++||+...            .+.+.+...|.+.|+|+.|+|++.     +||+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-----~lAs   86 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-----YLAS   86 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-----eEee
Confidence            456799999999999999999  899999998742            234566778999999999999999     8999


Q ss_pred             EeCCCcEEEEeCCC-------C-----------cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccc
Q psy11350        217 CAQDGSVKLWSLDK-------D-----------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLA  273 (471)
Q Consensus       217 ~~~dg~i~iwd~~~-------~-----------~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~  273 (471)
                      |+.|+.|.||....       +           +.+..+.+|.. .|.+++|+|++.++++++.|+++.+|.     ...
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-ccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            99999999998762       0           24566777776 899999999999999999999977754     355


Q ss_pred             cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCC------CCCeEEEEEeCCCCEEEEEe----CC
Q psy11350        274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGH------GKPVYCMSFQGDGSVVATGG----LD  343 (471)
Q Consensus       274 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~t~~----~d  343 (471)
                      .+.+| ...|..+.|.|-|+|||+-+.|++|++|.+.+....+.+.++      ...+..+.|||||.+|++..    .-
T Consensus       166 vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  166 VLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eeecc-cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            67788 558999999999999999999999999998877666666543      34577899999999999864    23


Q ss_pred             CeEEEEeCCCCeeEEEecccCcCEEEEEEcC-----CCC------------EEEEEeCCCcEEEEECCCccchheecc
Q psy11350        344 AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-----DGY------------HLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-----~~~------------~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      .++.|.+-.+.+.-..|-||.+++.+++|+|     +..            .+|+||.|++|.||.....+++..+..
T Consensus       245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~  322 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN  322 (942)
T ss_pred             ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence            4688999888888889999999999999998     112            678999999999999988888875543

>KOG0316|consensus

Probab=99.96  E-value=1.2e-26  Score=191.90  Aligned_cols=236  Identities=19%  Similarity=0.275  Sum_probs=206.5

Q ss_pred             eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       186 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                      ....+..|+++|.++.|+-+++     +.++++.|.+|++|+...+.+++++.+|.. .|..++.+.|+..|++|+.|..
T Consensus         9 r~~~l~~~qgaV~avryN~dGn-----Y~ltcGsdrtvrLWNp~rg~liktYsghG~-EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGN-----YCLTCGSDRTVRLWNPLRGALIKTYSGHGH-EVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             hceeecccccceEEEEEccCCC-----EEEEcCCCceEEeecccccceeeeecCCCc-eeeeccccccccccccCCCCce
Confidence            4567788999999999999998     799999999999999999999999999887 8999999999999999999998


Q ss_pred             EEec-----cccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCC--cEEEEeeCCCCCeEEEEEeCCCCEEE
Q psy11350        266 WRLD-----TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG--QEVLHQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       266 ~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                      +.+|     ...+.+.+| ...|+.+.|+.+...+++|+.|.++++||.++.  ++++.+......|.++..+  +..|+
T Consensus        83 v~vwDV~TGkv~Rr~rgH-~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv  159 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGH-LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV  159 (307)
T ss_pred             EEEEEcccCeeeeecccc-cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence            5543     346678888 668999999999999999999999999999865  6777777778889999885  56899


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC-----------
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP-----------  407 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------  407 (471)
                      +|+.||+++.||++.|+...-+.+|  +|+++.|+++++..+.++.|+++++.|-.+|++++....+..           
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q  237 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ  237 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence            9999999999999999877666554  899999999999999999999999999999999998766643           


Q ss_pred             CccceeeccccceeeeecccCCCcc
Q psy11350        408 NSIGVTSLLTDLYIDVLESLNPGIG  432 (471)
Q Consensus       408 ~~~~~~~~~~d~~~~~~~~~~~~~~  432 (471)
                      ....+++.+.|+...+|++.+....
T Consensus       238 sdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             cceeEEeccCCceEEEEEeccceee
Confidence            4557777888888888888776533

>KOG0274|consensus

Probab=99.96  E-value=8.6e-27  Score=227.85  Aligned_cols=263  Identities=22%  Similarity=0.344  Sum_probs=222.1

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      |...+.+..|.  +.++++++.+++|.+|+..++..+.. +.+|.+.|+++++...+.     ++++|+.|.++++||..
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-----~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-----KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC-----EEEEEecCCcEEeEecC
Confidence            67788899998  57899999999999999999999888 999999999999987444     79999999999999999


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +|++...+.+|.. .+.++..  ....+++|+.|.++++|..     +..+.+| ..+|.++..+  +.++++|+.|++|
T Consensus       280 sg~C~~~l~gh~s-tv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h-~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  280 TGECTHSLQGHTS-SVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH-TGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             CCcEEEEecCCCc-eEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccc-cccEEEEEec--CCEEEEEecCceE
Confidence            9999999998876 5666554  4556777899999666533     3445555 7789999998  8899999999999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      ++||+.+++++..+.+|...|+++.+.+. ..+++|+.|++|++||+++. +++.++.+|..-+..+.+  .+++|++++
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~  430 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS  430 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence            99999999999999999999999988664 89999999999999999999 999999999998977766  578999999


Q ss_pred             CCCcEEEEECCCccchheecccCCCcc--------ceeeccccceeeeecccCC
Q psy11350        384 EDNAVKIWDLRKRRLLKWCTQLLPNSI--------GVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~  429 (471)
                      .||+|++||...+++++++.......+        .+++...++.+.+|+....
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccC
Confidence            999999999999999999887522222        2333345556666655444

>KOG0310|consensus

Probab=99.95  E-value=7.3e-27  Score=212.15  Aligned_cols=235  Identities=23%  Similarity=0.347  Sum_probs=205.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ...|.+++|-.||++||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|.+..    .+++|+.|+.+++||+.+.
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t----~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNT----MLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCe----EEEecCCCceEEEEEcCCc
Confidence            468999999999999999999999999998777788899999999999999998875    7899999999999999988


Q ss_pred             cceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEecccc----ccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPL----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      .....+.+|.+ .|.+.+|+|... .+++|+.||.+++|...    ....-.+..+|..+.+-|.|..|++++ ...|++
T Consensus       144 ~v~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV  221 (487)
T KOG0310|consen  144 YVQAELSGHTD-YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV  221 (487)
T ss_pred             EEEEEecCCcc-eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence            87667888888 899999999765 78999999998876432    223334467899999999999999988 567999


Q ss_pred             EECCCCc-EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        307 WDLNQGQ-EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       307 wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                      ||+-+|. .+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|-.|
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccc
Confidence            9999664 444555599999999999999999999999999999998888888886 66899999999999999999999


Q ss_pred             CcEEEEEC
Q psy11350        386 NAVKIWDL  393 (471)
Q Consensus       386 g~i~iwd~  393 (471)
                      |.+.+=+.
T Consensus       301 Glv~~rr~  308 (487)
T KOG0310|consen  301 GLVSIRRR  308 (487)
T ss_pred             ceeeeehh
Confidence            99877643

>KOG0310|consensus

Probab=99.95  E-value=9.9e-27  Score=211.27  Aligned_cols=268  Identities=25%  Similarity=0.320  Sum_probs=214.4

Q ss_pred             CCcCeEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        151 DTRPISYCSFSPDSQH-VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      ...+|++++|||...+ +|+.+ .-.+.||+..+.....++......|.+++|-.+|.     +|+.|...|.|+|+|+.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~-----LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR-----LLAAGDESGHVKVFDMK   98 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe-----EEEccCCcCcEEEeccc
Confidence            3568999999997655 45444 67899999998888887877888999999999998     89999999999999987


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCE-EEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCC-CCEEEEEecCC
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPS-GRFLGTCCWDH  302 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~-i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg  302 (471)
                      +...+..+..|.. ++....|+|.++. +++|+.|+...+|..     ...+.+| ...|.|.+|+|- +..+++|+.||
T Consensus        99 ~r~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-tDYVR~g~~~~~~~hivvtGsYDg  176 (487)
T KOG0310|consen   99 SRVILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-TDYVRCGDISPANDHIVVTGSYDG  176 (487)
T ss_pred             cHHHHHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC-cceeEeeccccCCCeEEEecCCCc
Confidence            7667788888887 9999999998765 555666666444322     3356677 568999999995 55899999999


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      +|++||++.......-..|..+|.++.+-|.|.++++++ .+.|+|||+-+| +.+..+..|...|+|+++..++..|++
T Consensus       177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS  255 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS  255 (487)
T ss_pred             eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence            999999998743333345999999999999999999986 457999999966 445555559999999999999999999


Q ss_pred             EeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCC
Q psy11350        382 GSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      ||-|+.|++||+.+-+.+..+.  .++++..++++.|....+.-..++
T Consensus       256 ~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  256 GSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             cccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccc
Confidence            9999999999998888887655  345566666666655555544443

>KOG0282|consensus

Probab=99.95  E-value=4.9e-28  Score=219.38  Aligned_cols=216  Identities=28%  Similarity=0.421  Sum_probs=187.1

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-CcceeeecCCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                      +.+.++.+|...|+++.|.|...+    +|++++.|+.|+||++-. +.++.++.+|.. +|.++.|+++|..+++++.|
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~h----LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGH----LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-PVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             hheeeccCCccccchhhhccceee----EEEecCCCceEEEEEEecCcceehhhhcchh-hhhhhhccccCCeeeeeecc
Confidence            567788999999999999995543    899999999999999865 889999999998 99999999999999999999


Q ss_pred             CeEEec---cccccccCCCCcceEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE
Q psy11350        264 HSWRLD---TPLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       264 ~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  339 (471)
                      +.+++|   +.......+....++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+.+++
T Consensus       280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence            996665   44445555656679999999988 78999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeEE----------------------------------------------EecccC--cCEEEEE
Q psy11350        340 GGLDAFGRVWDLRTGRCIM----------------------------------------------FLEGHL--KSVFSVD  371 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~----------------------------------------------~~~~h~--~~v~~~~  371 (471)
                      .+.|++++||+.+.+-++.                                              .+.||.  +--..+.
T Consensus       360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            9999999999877532221                                              123443  3456789


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      |||||.+|++|+.||.+.+||.++-+++..+..+
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence            9999999999999999999999999999888766

>KOG0643|consensus

Probab=99.95  E-value=3.1e-26  Score=192.85  Aligned_cols=275  Identities=20%  Similarity=0.218  Sum_probs=223.4

Q ss_pred             EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe
Q psy11350        189 TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  268 (471)
Q Consensus       189 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~  268 (471)
                      .+++|..+++.|.++.+|.     +|++|+.|.+..+|-..+|+.+.++.+|.+ .|+++...-+.+++++|+.|.+.++
T Consensus         5 ~l~GHERplTqiKyN~eGD-----LlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-----LLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEEecCCCc-----EEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEE
Confidence            4678999999999999998     899999999999999889999999999998 9999999999999999999998555


Q ss_pred             c---cccccccCCCCcceEEEEECCCCCEEEEEecC-----CeEEEEECC-------CCcEEEEeeCCCCCeEEEEEeCC
Q psy11350        269 D---TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----HSWRLWDLN-------QGQEVLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       269 ~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~d  333 (471)
                      |   ..........+.+|..+.|+++|++++.++.+     +.|.++|++       ...++..+..+...++.+-|.|-
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            4   34444444456689999999999988877643     679999998       45678888888999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccce
Q psy11350        334 GSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGV  412 (471)
Q Consensus       334 ~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  412 (471)
                      +.+|++|..||.|.+||+++| +.+.....|...|+.|.++||..+++++|.|.+-++||+.+..+++++....|-+...
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            999999999999999999998 4555667899999999999999999999999999999999999999999888876666


Q ss_pred             eeccccceee-------eecccCCCcc----cccchhhhcccccce-eeecccceeeeecCCeEEEeec
Q psy11350        413 TSLLTDLYID-------VLESLNPGIG----NIISSALKEQVEPIP-LLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       413 ~~~~~d~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                      ++...|.-+.       -+.......+    +++-..+.+.+..+. .+.+++.++|+|||+.-|....
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE  307 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE  307 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC
Confidence            6654442221       1111111122    233344445555554 3568999999999998775543

>KOG0301|consensus

Probab=99.95  E-value=2e-26  Score=217.34  Aligned_cols=272  Identities=19%  Similarity=0.297  Sum_probs=228.8

Q ss_pred             ccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE--EEeecCCCCEEE-EEEeeCCCCCCccEEEEE
Q psy11350        141 SLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELV--QTFRGHDCNVGA-IEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       141 ~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~  217 (471)
                      .+.+.+.+.||...|..+++.+. ..++++|.||++++|+-...+.+  ..+.+|.+.|.. +++.+....    .+++|
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~----~l~~g   77 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKG----RLVVG   77 (745)
T ss_pred             cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCc----ceEee
Confidence            45677889999999999987764 47999999999999997555443  456778888877 888764332    59999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec---cccccccCCCCcceEEEEECCCCCE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD---TPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      +.|++|.+|.+.+..++..+.+|.. .|.++....++. +++|+.|.+.++|   .....+.+| ...|+++..-|++ .
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~s-nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH-~asVWAv~~l~e~-~  153 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKS-NVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGH-TASVWAVASLPEN-T  153 (745)
T ss_pred             cccceEEEEecCCCCchhhhhcccc-ceeeeecCCcCc-eEecccccceEEecchhhhcccCCc-chheeeeeecCCC-c
Confidence            9999999999999999999999998 899999888888 9999999995554   556678888 6689999999987 8


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      +++|+.|.+|++|.-  ++.+.++.+|...|..+++-+++ .+++++.||.|++|++ +|.++..+.+|..-|+++...+
T Consensus       154 ~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~  229 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL  229 (745)
T ss_pred             EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence            889999999999985  67889999999999999999875 4788999999999998 8899999999999999999888


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheecccCC--------Cccceeeccccceeeeeccc
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP--------NSIGVTSLLTDLYIDVLESL  427 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~  427 (471)
                      ++..++|++.|++++||+..  .+.+.+..+..        ....++...+|+.++++...
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            88999999999999999987  66666654432        23355566778888887765

>KOG0300|consensus

Probab=99.95  E-value=6.4e-27  Score=201.45  Aligned_cols=255  Identities=25%  Similarity=0.388  Sum_probs=200.0

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.+...+.||...|+.++.......+.+++.|.+.+||.+++|.++.++.+|.+.|++|.|++.+.     ++++++.|+
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~-----L~lTaSGD~  212 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGL-----LLLTASGDE  212 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccc-----eEEEccCCc
Confidence            444556779999999999888778899999999999999999999999999999999999999987     899999999


Q ss_pred             cEEEEeCCCCcceeee---cCCC-CcceEEEEECCCCCEEEEEe--CCCeEEeccccccccCCCCcceEEEEECCCCCEE
Q psy11350        222 SVKLWSLDKDTPLANL---EGHE-PFRVSRIKFHPSGRFLGTCC--WDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~---~~~~-~~~v~~~~~s~~~~~i~~~~--~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +-.||...-+-.+..-   ..|. .....+   +........++  .|+ -.+..++..+.+| ...|.+..|-..|+.+
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~---sDe~~~d~d~~~~sD~-~tiRvPl~~ltgH-~~vV~a~dWL~gg~Q~  287 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEH---SDEHNRDTDSSEKSDG-HTIRVPLMRLTGH-RAVVSACDWLAGGQQM  287 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhc---ccccccccccccccCC-ceeeeeeeeeecc-ccceEehhhhcCccee
Confidence            9999973211111000   0000 000000   00000000000  011 1234567778888 5689999999999999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcC
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp  374 (471)
                      ++++.|.+..+||++++..+..+.||....+.++-+|..+++++++.|.+.++||++.. ..+..|+||...|+++.|..
T Consensus       288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~  367 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT  367 (481)
T ss_pred             eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999854 56778999999999999986


Q ss_pred             CCCEEEEEeCCCcEEEEECCCcc-chheecccCC
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRR-LLKWCTQLLP  407 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~  407 (471)
                      + ..+++|++|.+|+|||+++.+ ++.++....+
T Consensus       368 d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~  400 (481)
T KOG0300|consen  368 D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP  400 (481)
T ss_pred             C-CceeecCCCceEEEeeeccccCcceeeecCCc
Confidence            6 568999999999999998754 5666655444

>KOG0277|consensus

Probab=99.95  E-value=2.7e-27  Score=197.81  Aligned_cols=205  Identities=24%  Similarity=0.412  Sum_probs=176.5

Q ss_pred             eeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        146 CSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ..++.|.+.|.++.|++- +..++++++||+|++|+...++.+.++.+|...|....|+|...+    ++++++.|++++
T Consensus        98 ~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n----lfas~Sgd~~l~  173 (311)
T KOG0277|consen   98 HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN----LFASASGDGTLR  173 (311)
T ss_pred             hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC----eEEEccCCceEE
Confidence            456679999999999985 456788899999999999999999999999999999999999887    899999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecCCe
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHS  303 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~  303 (471)
                      +||++.......+..|.                                       ..+.++.|+. +.+.+++|+.|+.
T Consensus       174 lwdvr~~gk~~~i~ah~---------------------------------------~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  174 LWDVRSPGKFMSIEAHN---------------------------------------SEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             EEEecCCCceeEEEecc---------------------------------------ceeEeecccccCCcEEEecCCCce
Confidence            99987543333344443                                       3588888887 6678999999999


Q ss_pred             EEEEECCCC-cEEEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcC-CCCEE
Q psy11350        304 WRLWDLNQG-QEVLHQEGHGKPVYCMSFQGD-GSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSP-DGYHL  379 (471)
Q Consensus       304 i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d-~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l  379 (471)
                      |++||++.. .++..+.+|.-.|..+.|||. ..+|++++.|=+++|||...+ .++.+...|+.-+..+.|++ ++.++
T Consensus       215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~v  294 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQV  294 (311)
T ss_pred             EEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCcee
Confidence            999999876 467888999999999999994 568999999999999998754 45667778999999999998 67899


Q ss_pred             EEEeCCCcEEEEEC
Q psy11350        380 ATGSEDNAVKIWDL  393 (471)
Q Consensus       380 ~s~s~dg~i~iwd~  393 (471)
                      |+++.|+.++||+-
T Consensus       295 As~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  295 ASTGWDELLYVWNP  308 (311)
T ss_pred             eecccccceeeecc
Confidence            99999999999983

>KOG0308|consensus

Probab=99.95  E-value=8.5e-27  Score=218.29  Aligned_cols=233  Identities=21%  Similarity=0.366  Sum_probs=205.1

Q ss_pred             EEEEe-cCCCEEEEEeCCCcEEEEeCCCCc------eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        157 YCSFS-PDSQHVATASWSGLCKLWTVPECE------LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       157 ~~~~s-~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      ++..+ |.+++|+|||.||.|++|++....      ....+..|...|+.+....++.     .|++++.|-+|++|+..
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-----tlIS~SsDtTVK~W~~~  103 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-----TLISASSDTTVKVWNAH  103 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-----ceEEecCCceEEEeecc
Confidence            34444 567789999999999999986422      3567788999999999998887     59999999999999998


Q ss_pred             CC--cceeeecCCCCcceEEEEE-CCCCCEEEEEeCCCeEEecccc---------------cccc-CCCCcceEEEEECC
Q psy11350        230 KD--TPLANLEGHEPFRVSRIKF-HPSGRFLGTCCWDHSWRLDTPL---------------ANLE-GHEPFRVSRIKFHP  290 (471)
Q Consensus       230 ~~--~~~~~~~~~~~~~v~~~~~-s~~~~~i~~~~~d~~~~~~~~~---------------~~~~-~~~~~~v~~l~~~~  290 (471)
                      .+  -+..++..|.+ .|.|+++ .++...+++|+.|+.+.+|...               ..+. ++ ...|++++.++
T Consensus       104 ~~~~~c~stir~H~D-YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~  181 (735)
T KOG0308|consen  104 KDNTFCMSTIRTHKD-YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQ  181 (735)
T ss_pred             cCcchhHhhhhcccc-hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCC
Confidence            77  57778888888 8999999 8889999999999985554221               1122 33 56799999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                      .|..|++|+..+.+++||.++++.+..+.||...|.++..++||..+++++.||+|++||+...+|+.++..|...|.++
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        371 DFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      ..+|+=.++++|+.||.|..=|+++.
T Consensus       262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999884

>KOG0647|consensus

Probab=99.95  E-value=1.7e-25  Score=191.67  Aligned_cols=268  Identities=21%  Similarity=0.265  Sum_probs=208.2

Q ss_pred             CCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCC-CceE-EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        151 DTRPISYCSFSP-DSQHVATASWSGLCKLWTVPE-CELV-QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       151 h~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ....|.+++||| ...++++|++||+|++|++.. |..+ +....|.++|.+++|+.++.     .+++|+.|+.+++||
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-----kVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-----KVFSGGCDKQAKLWD  100 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-----eEEeeccCCceEEEE
Confidence            567899999999 456677999999999999976 3333 34457899999999999998     699999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCC--EEEEEeCCCeEEecccccc---ccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGR--FLGTCCWDHSWRLDTPLAN---LEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~i~~~~~d~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      +.++ .+..+..|.. +|..+.|-+...  .|++|+.|+++++|.....   .....+.+++++..-  ...++++..+.
T Consensus       101 L~S~-Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r  176 (347)
T KOG0647|consen  101 LASG-QVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAER  176 (347)
T ss_pred             ccCC-Ceeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCC
Confidence            9999 4555666666 899999988776  8999999999888754332   222234456666553  45788899999


Q ss_pred             eEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC--eeEEEecccCc---------CEEE
Q psy11350        303 SWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG--RCIMFLEGHLK---------SVFS  369 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~  369 (471)
                      .|.+|+++.+.....  .....-.+.|++..+|....+.|+-+|.+.|..+..+  +.-.+|+.|..         .|++
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence            999999987643221  1223456789999998888899999999999998876  44456666652         5788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccC
Q psy11350        370 VDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLN  428 (471)
Q Consensus       370 ~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  428 (471)
                      |+|+|.-..|+|+|.||++.+||-+....+++.. ..+.++...++..++.+..+.+..
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYALGY  314 (347)
T ss_pred             eEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEEeec
Confidence            9999998999999999999999998888777654 345567777777888887776543

>KOG1539|consensus

Probab=99.95  E-value=9.5e-25  Score=210.02  Aligned_cols=257  Identities=19%  Similarity=0.264  Sum_probs=201.7

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ...+.+.++...|+++.=+|--..+|.|..+|+|.|+|++.++.+.+|+...++|+.++|..+|..    .+++|+..|.
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p----~las~~~~G~  268 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP----LLASGRSNGD  268 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe----eEEeccCCce
Confidence            455677889999999999999999999999999999999999999999876799999999999986    7899999999


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCC-----------------------------------------------CC
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPS-----------------------------------------------GR  255 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------------------------------~~  255 (471)
                      +.+||++..+.+......+...+....|.|.                                               |.
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            9999998776655554222223444444443                                               44


Q ss_pred             EEEEEeCCCeEEec------------c--------c--------------------------------------------
Q psy11350        256 FLGTCCWDHSWRLD------------T--------P--------------------------------------------  271 (471)
Q Consensus       256 ~i~~~~~d~~~~~~------------~--------~--------------------------------------------  271 (471)
                      ++.+++.|.+++..            .        .                                            
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence            44444444431110            0        0                                            


Q ss_pred             -----c--ccccCC----CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe---eCCCCCeEEEEEeCCCCEE
Q psy11350        272 -----L--ANLEGH----EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ---EGHGKPVYCMSFQGDGSVV  337 (471)
Q Consensus       272 -----~--~~~~~~----~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l  337 (471)
                           .  ..+...    ....+++++.++-|++.+.|+..|+|-+|++++|-....+   ..|..+|++++...-++.+
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence                 0  000000    0124788999999999999999999999999999777777   5899999999999888999


Q ss_pred             EEEeCCCeEEEEeCCCCeeE-----------------------------------------EEecccCcCEEEEEEcCCC
Q psy11350        338 ATGGLDAFGRVWDLRTGRCI-----------------------------------------MFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       338 ~t~~~dg~i~iwd~~~~~~~-----------------------------------------~~~~~h~~~v~~~~~sp~~  376 (471)
                      ++++.+|.+++||......+                                         ..+.||.+.|++++|||||
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG  588 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence            99999999999998754322                                         2246899999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheec
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++|++++.|++|++||+.++.++-.+.
T Consensus       589 rWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  589 RWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             cEEEEeecCCcEEEEeccCcceeeeEe
Confidence            999999999999999999999886443

>KOG0305|consensus

Probab=99.95  E-value=2.9e-25  Score=209.36  Aligned_cols=263  Identities=19%  Similarity=0.301  Sum_probs=218.4

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        156 SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      .-+.|+ ..+.||+|. ...|++|+..+++.......+...|+++.|+++|.     +|++|..+|.|.|||..+.+.+.
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-----~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-----HLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCC-----EEEEeecCCeEEEEehhhccccc
Confidence            345787 455777776 67999999999987776666689999999999999     79999999999999999999999


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeCCCeEEec-----cc-cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEEC
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD-----TP-LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDL  309 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~-----~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  309 (471)
                      .+..++...|.+++|.  +..+.+|+.++.+...     .. ...+.+| ...|+.+.|++++++||+|+.|+.+.|||.
T Consensus       254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H-~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGH-RQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcc-cceeeeeEECCCCCeeccCCCccceEeccC
Confidence            9998555599999999  7888999999985542     22 2235566 668999999999999999999999999999


Q ss_pred             CCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEe--CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE--eC
Q psy11350        310 NQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG--SE  384 (471)
Q Consensus       310 ~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~--s~  384 (471)
                      ....++..+..|...|.+++|+| ...+||+|+  .|+.|++||..++..+..+. -...|.+|.|++..+-|+++  ..
T Consensus       331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence            88889999999999999999999 677899875  69999999999999998876 45789999999988766654  45


Q ss_pred             CCcEEEEECCCccchheecccC---------CCccceeeccccceeeeecccCC
Q psy11350        385 DNAVKIWDLRKRRLLKWCTQLL---------PNSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       385 dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      ++.|.||++.+.+++..+..+.         |....+++...|..+.+|..++.
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            6789999999988877665543         45566666677777777777664

>KOG0267|consensus

Probab=99.95  E-value=7.5e-28  Score=227.79  Aligned_cols=212  Identities=25%  Similarity=0.487  Sum_probs=195.2

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      +..|...|.|+..-..++.+++|++|..+-+|.+.....+..|.+|..+|.+|.|++...     +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~-----LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSER-----LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchh-----hhcccccCCceeeee
Confidence            346999999999877889999999999999999988888888999999999999999887     799999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW  307 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw  307 (471)
                      +.....++++.+|..                                       .+.++.|+|-+.+++.|+.|+.+++|
T Consensus        99 leeAk~vrtLtgh~~---------------------------------------~~~sv~f~P~~~~~a~gStdtd~~iw  139 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLL---------------------------------------NITSVDFHPYGEFFASGSTDTDLKIW  139 (825)
T ss_pred             hhhhhhhhhhhcccc---------------------------------------CcceeeeccceEEeccccccccceeh
Confidence            998877776666643                                       68889999999999999999999999


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCc
Q psy11350        308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA  387 (471)
Q Consensus       308 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  387 (471)
                      |.+...+...+.+|...|..+.|+|+|++++.|+.|..++|||+..|+.+..|..|.+.+.++.|+|..-++++||.|++
T Consensus       140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT  219 (825)
T ss_pred             hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCccchheec
Q psy11350        388 VKIWDLRKRRLLKWCT  403 (471)
Q Consensus       388 i~iwd~~~~~~~~~~~  403 (471)
                      |++||+++...+-...
T Consensus       220 v~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  220 VRFWDLETFEVISSGK  235 (825)
T ss_pred             eeeeccceeEEeeccC
Confidence            9999999888775444

>KOG0289|consensus

Probab=99.95  E-value=2e-25  Score=199.83  Aligned_cols=242  Identities=25%  Similarity=0.350  Sum_probs=213.5

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+.||+..|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.+.     ||++++.||+..+
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tge-----YllsAs~d~~w~F  329 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGE-----YLLSASNDGTWAF  329 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCc-----EEEEecCCceEEE
Confidence            45679999999999999999999999999999999998888888899999999999999999     8999999999999


Q ss_pred             EeCCCCcceeeecCC-CCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        226 WSLDKDTPLANLEGH-EPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       226 wd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      .|+.++..+...... .+..+++.+|+|||..|.+|..|+.+++|.     ....+.+| .++|..++|+.+|-+|++++
T Consensus       330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceEEEEEe
Confidence            999999988776653 445799999999999999999999977754     35567776 77999999999999999999


Q ss_pred             cCCeEEEEECCCCcEEEEeeCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC--CCeeEEEecccCcCEEEEEEcCCC
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQGDGSVVATGGLDAFGRVWDLR--TGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      .|+.|++||++..+...++... ..++.++.|.+.|.+|+.++.|=.|++++-.  +..++..+..|.+..+++.|....
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a  488 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA  488 (506)
T ss_pred             cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence            9999999999988877666533 3479999999999999999887777777633  457788888899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEC
Q psy11350        377 YHLATGSEDNAVKIWDL  393 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~  393 (471)
                      ++++++|.|..++++.+
T Consensus       489 q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  489 QYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEeeccchhheEEeec
Confidence            99999999999988764

>KOG1332|consensus

Probab=99.94  E-value=4.8e-26  Score=189.35  Aligned_cols=239  Identities=22%  Similarity=0.324  Sum_probs=193.7

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceEEEeecCCCCEEEEEEee--CCCCCCccEEEEEeCCCcE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC---ELVQTFRGHDCNVGAIEFHP--LPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~--~~~~~~~~~l~s~~~dg~i  223 (471)
                      .+|..-|..+...--|++|||++.|++|+|+.+...   +.+.++.+|.+||+.++|..  .|.     +|++++.||.|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-----iLAScsYDgkV   82 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT-----ILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc-----EeeEeecCceE
Confidence            468888888888888999999999999999998753   56789999999999999975  444     89999999999


Q ss_pred             EEEeCCCCcc--eeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEec--------cccccccCCCCcceEEEEECCC
Q psy11350        224 KLWSLDKDTP--LANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLD--------TPLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       224 ~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~--------~~~~~~~~~~~~~v~~l~~~~~  291 (471)
                      .||.-.+++-  ...+..|.. .|++++|.|.  |-.|++++.||.+.+-        ........| ...|++++|.|.
T Consensus        83 IiWke~~g~w~k~~e~~~h~~-SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH-~~GvnsVswapa  160 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSA-SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH-EIGVNSVSWAPA  160 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcc-cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc-ccccceeeecCc
Confidence            9999877753  334445555 8999999886  5688999999997662        223344555 567999999995


Q ss_pred             ---C-----------CEEEEEecCCeEEEEECCCCc--EEEEeeCCCCCeEEEEEeCCC----CEEEEEeCCCeEEEEeC
Q psy11350        292 ---G-----------RFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCMSFQGDG----SVVATGGLDAFGRVWDL  351 (471)
Q Consensus       292 ---~-----------~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~----~~l~t~~~dg~i~iwd~  351 (471)
                         |           +.|++|+.|..|+||+...++  .-.++.+|.+-|..++|.|.-    .+|++++.||++.||-.
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence               4           569999999999999998763  334588999999999999943    48999999999999976


Q ss_pred             CCC---eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        352 RTG---RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       352 ~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +..   -....+......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            532   1122334456789999999999999999999999999744

>KOG0275|consensus

Probab=99.94  E-value=3e-26  Score=197.88  Aligned_cols=239  Identities=21%  Similarity=0.297  Sum_probs=212.5

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+.-|..+|.|++||.|..+||+|+.||.|+||.+.+|.+++.|. .|...|+|+.|+.++.     .+++++.|.++++
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-----qiLS~sfD~tvRi  332 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-----QILSASFDQTVRI  332 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-----hhhcccccceEEE
Confidence            445688999999999999999999999999999999999999987 8999999999999998     5999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-----ccccC-CCCcceEEEEECC-CCCEEEEE
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-----ANLEG-HEPFRVSRIKFHP-SGRFLGTC  298 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-----~~~~~-~~~~~v~~l~~~~-~~~~l~~~  298 (471)
                      .-+.+|++++.+.+|.. .|+...|+++|.++++++.||++++|...     .++.. ....+|..+-.-| +...++++
T Consensus       333 HGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             eccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence            99999999999999998 89999999999999999999998886532     22222 2345788888877 55689999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeC---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEG---HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ...++|+|.++. |+.++.+..   ..+...+.+.+|.|.++++.+.|+.++.|...+|+.-.++..|...|..++-+|.
T Consensus       412 Nrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  412 NRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             cCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence            999999999985 677777643   3456677889999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q psy11350        376 GYHLATGSEDNAVKIWD  392 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd  392 (471)
                      .+.|++-+.||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            99999999999999994

>KOG0641|consensus

Probab=99.94  E-value=7.8e-24  Score=174.24  Aligned_cols=237  Identities=23%  Similarity=0.358  Sum_probs=189.9

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---------------eEEEeecCCCCEEEEEEeeCCCCCCccE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE---------------LVQTFRGHDCNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~~~~~  213 (471)
                      ...+..|.+++|+|.|.+.++|+...+++|--.+.-.               ..+.-+.|.+.|.|.+|+|.+.     +
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-----l  103 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-----L  103 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-----e
Confidence            3578899999999999999999999999887543210               1122346899999999999999     8


Q ss_pred             EEEEeCCCcEEEEeCCCCcc-----eeeecCCCCcceEEEEECCC----CCEEEEEeC-CCeEEe-----ccccccccCC
Q psy11350        214 LASCAQDGSVKLWSLDKDTP-----LANLEGHEPFRVSRIKFHPS----GRFLGTCCW-DHSWRL-----DTPLANLEGH  278 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~s~~----~~~i~~~~~-d~~~~~-----~~~~~~~~~~  278 (471)
                      +++|+.|.+|++.-.+...+     -..+..|.+ .|..++|-.+    |..+++++. |..+.+     .++...+.+|
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh  182 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH  182 (350)
T ss_pred             EEecCCCceEEEEecccccccccCcceeeeecCC-ceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence            99999999999987654332     234556665 8999999553    445555543 344554     3456667777


Q ss_pred             CCcceEEE-EECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC--C-----CCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        279 EPFRVSRI-KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG--H-----GKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       279 ~~~~v~~l-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      .. .|.++ .|  ++-.|++|+.|.+|+.||++-..++.++..  |     ...|.+++..|.|++|++|-.|....+||
T Consensus       183 tg-hilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  183 TG-HILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             cc-cEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            43 45444 44  578999999999999999998888877632  2     35789999999999999999999999999


Q ss_pred             CCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ++.++.++.+..|...|.++.|+|...|+++|+.|..|++-|++
T Consensus       260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            99999999999999999999999999999999999999999986

>KOG0646|consensus

Probab=99.94  E-value=3.4e-25  Score=200.23  Aligned_cols=218  Identities=21%  Similarity=0.308  Sum_probs=183.2

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      -.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.++.     +|+||+.||.|.+|.+..
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-----~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-----HIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-----EEEecCCCccEEEEEEEe
Confidence            356899999999999999999999999999999999999999999999999999998     799999999999998632


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd  308 (471)
                      -  +.....+..                           .+...+..| .-+|+.+...+.  ..++++++.|.++++||
T Consensus       155 l--v~a~~~~~~---------------------------~p~~~f~~H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  155 L--VSADNDHSV---------------------------KPLHIFSDH-TLSITDLQIGSGGTNARLYTASEDRTIKLWD  204 (476)
T ss_pred             e--cccccCCCc---------------------------cceeeeccC-cceeEEEEecCCCccceEEEecCCceEEEEE
Confidence            1  111111111                           333444455 557888877764  35899999999999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC----------------CeeEEEecccCc--CEEEE
Q psy11350        309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT----------------GRCIMFLEGHLK--SVFSV  370 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~----------------~~~~~~~~~h~~--~v~~~  370 (471)
                      +..+..+.++. ....+.+++.+|-+..+++|+.+|.|.+.++..                +..+..+.||.+  .|+|+
T Consensus       205 lS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  205 LSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             eccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence            99998887765 467899999999999999999999999887643                234566788988  99999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        371 DFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +++-||..|++|+.||.|+|||+.+.++++++..
T Consensus       284 ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence            9999999999999999999999999999998874

>KOG2055|consensus

Probab=99.94  E-value=5.8e-25  Score=198.39  Aligned_cols=245  Identities=16%  Similarity=0.170  Sum_probs=197.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .++|+++.|+|....|++|+.||+++||.+..  ...++.+.-...+|.+.+|.|+|..    .+++++....+..||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~----~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS----VIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce----EEEecccceEEEEeecc
Confidence            57999999999999999999999999999853  3456666667889999999999985    68999999999999998


Q ss_pred             CCcce--eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---cccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        230 KDTPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       230 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +.+..  ....+.....+..+.+++++++|+..+..|.+.+-..   .........+.|..++|+.+++.|++++.+|.|
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceE
Confidence            87643  3344555557888999999999999999999877321   111122234579999999999999999999999


Q ss_pred             EEEECCCCcEEEEeeCCC-CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC------CeeEEEecccCcCEEEEEEcCCCC
Q psy11350        305 RLWDLNQGQEVLHQEGHG-KPVYCMSFQGDGSVVATGGLDAFGRVWDLRT------GRCIMFLEGHLKSVFSVDFSPDGY  377 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~  377 (471)
                      .+||+++..+++.+...+ -.-++++.++++.+||+|+..|.|.|||..+      .+++..+..-...|+++.|+|+++
T Consensus       369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            999999998888876432 2345788889999999999999999999654      367777777778999999999999


Q ss_pred             EEEEEeC--CCcEEEEECCCccchh
Q psy11350        378 HLATGSE--DNAVKIWDLRKRRLLK  400 (471)
Q Consensus       378 ~l~s~s~--dg~i~iwd~~~~~~~~  400 (471)
                      +||.+|.  +..+++-.+.+.....
T Consensus       449 iLAiaS~~~knalrLVHvPS~TVFs  473 (514)
T KOG2055|consen  449 ILAIASRVKKNALRLVHVPSCTVFS  473 (514)
T ss_pred             hhhhhhhccccceEEEeccceeeec
Confidence            9988764  5667777776554433

>KOG0641|consensus

Probab=99.94  E-value=6.6e-24  Score=174.67  Aligned_cols=246  Identities=22%  Similarity=0.346  Sum_probs=201.5

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC--CCce---EEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-C
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP--ECEL---VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-Q  219 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~--~~~~---~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~  219 (471)
                      ...+.|.+.|.|.+|||+|.+|++|+.|.+|++.-.+  +.+.   -..|..|.+.|..++|..+...... +|++++ .
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gag  161 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAG  161 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCC
Confidence            3456789999999999999999999999999997654  3222   2357789999999999877654444 566654 5


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----ccccc------CCCCcceEEEEE
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLE------GHEPFRVSRIKF  288 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~------~~~~~~v~~l~~  288 (471)
                      |..|.+-|..+|+..+.+.+|.+ .|.++ ++-+|-.|++|+.|.++++|..     +..+.      +-....|.+++.
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtg-hilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTG-HILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcc-cEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            67777888999999999999987 45443 3446889999999999776543     22221      112357999999


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC----eeEEEecccC
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG----RCIMFLEGHL  364 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~h~  364 (471)
                      .|.|++|++|-.|....+||++.++.+..+.+|...|.|+.|+|.-.++++++.|..|++-|+...    -++.....|.
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk  319 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK  319 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence            999999999999999999999999999999999999999999999999999999999999998632    3445556799


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ..+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       320 dk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  320 DKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CceEEEEecCccceeeeccCcceEEEeccC
Confidence            999999999999999999999999999764

>KOG1446|consensus

Probab=99.94  E-value=5.2e-24  Score=184.15  Aligned_cols=240  Identities=19%  Similarity=0.284  Sum_probs=199.4

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASW--SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      +...++..|..++|......++.++.  |.+|+..++.+.+.++.|.||...|+.|+.+|.+.     .+++++.|++|+
T Consensus        51 ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-----~FlS~S~D~tvr  125 (311)
T KOG1446|consen   51 TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-----TFLSSSLDKTVR  125 (311)
T ss_pred             EeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-----eEEecccCCeEE
Confidence            34456778889999888777777765  88999999999999999999999999999999997     799999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-------cccc--ccCCCCcceEEEEECCCCCEE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-------PLAN--LEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-------~~~~--~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +||++..++...+....   -..++|.|.|-++|++.....+.+..       |...  +........+.|.|+|+|+++
T Consensus       126 LWDlR~~~cqg~l~~~~---~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~i  202 (311)
T KOG1446|consen  126 LWDLRVKKCQGLLNLSG---RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSI  202 (311)
T ss_pred             eeEecCCCCceEEecCC---CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEE
Confidence            99999887777665443   35689999999999999887766632       2222  221224468999999999999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCe---EEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc-cCcCEEEEE
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPV---YCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG-HLKSVFSVD  371 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~  371 (471)
                      +.++..+.+++.|.-+|..+..+.++...-   ...+|+||++++++|+.||+|.+|+++++..+..+.+ +.+++.++.
T Consensus       203 LlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~  282 (311)
T KOG1446|consen  203 LLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR  282 (311)
T ss_pred             EEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence            999999999999999999888887765433   5788999999999999999999999999999999998 789999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      |+|.-..++++  +..+.+|=....
T Consensus       283 fnP~~~mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  283 FNPRYAMFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             cCCceeeeeec--CceEEEEecccc
Confidence            99976666665  456888865533

>KOG0293|consensus

Probab=99.94  E-value=1.2e-25  Score=200.05  Aligned_cols=205  Identities=23%  Similarity=0.407  Sum_probs=167.6

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      +.+..++.||..+|..+.||||.++|++++.+..+.+||+.+|...+.+. +|...+.+++|.|++.     .+++|+.|
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-----~~V~Gs~d  333 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-----RFVTGSPD  333 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-----eeEecCCC
Confidence            66788999999999999999999999999999999999999999888775 4567899999999998     59999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe--------------------------------
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL--------------------------------  268 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~--------------------------------  268 (471)
                      +++..||++ |..+....+-....|.+++.++||+++++.+.|..+.+                                
T Consensus       334 r~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  334 RTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV  412 (519)
T ss_pred             CcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence            999999984 55555555555557888888888888887777665433                                


Q ss_pred             ---------c-----cccccccCCCCc-ceEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC
Q psy11350        269 ---------D-----TPLANLEGHEPF-RVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG  332 (471)
Q Consensus       269 ---------~-----~~~~~~~~~~~~-~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  332 (471)
                               |     ..+..+.+|..+ -+-.-+|-- +..++++|+.|+.|+||+..+++++..+.||...|++++|+|
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence                     1     112233344221 233445544 457999999999999999999999999999999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeCC
Q psy11350        333 -DGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       333 -d~~~l~t~~~dg~i~iwd~~  352 (471)
                       +..++|+++.||+|+||...
T Consensus       493 ~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  493 ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCHHHhhccCCCCeEEEecCC
Confidence             67799999999999999765

>KOG0264|consensus

Probab=99.94  E-value=3e-25  Score=200.20  Aligned_cols=210  Identities=24%  Similarity=0.421  Sum_probs=174.1

Q ss_pred             cceeeeeecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCC-------ceEEEeecCCCCEEEEEEeeCCCCCCccE
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  213 (471)
                      +..-..+.||+..=.+++|++... +|++|+.|+.|++||+...       .....+.+|...|..++|++....    +
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----l  242 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----L  242 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----h
Confidence            444557889999888899998754 6889999999999999642       234578899999999999998876    8


Q ss_pred             EEEEeCCCcEEEEeCCC--CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-
Q psy11350        214 LASCAQDGSVKLWSLDK--DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-  290 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-  290 (471)
                      |++++.|+.+.|||+++  .++......|                                       ...|.|++|+| 
T Consensus       243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah---------------------------------------~~~vn~~~fnp~  283 (422)
T KOG0264|consen  243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAH---------------------------------------SAEVNCVAFNPF  283 (422)
T ss_pred             heeecCCCeEEEEEcCCCCCCCccccccc---------------------------------------CCceeEEEeCCC
Confidence            99999999999999985  3333333333                                       44799999999 


Q ss_pred             CCCEEEEEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC--------------
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG--------------  354 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~--------------  354 (471)
                      ++..||+|+.|++|.+||+++. +++..+.+|...|.++.|+| ....|++++.|+.+.|||+..-              
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp  363 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP  363 (422)
T ss_pred             CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence            5668899999999999999986 46788999999999999999 4568999999999999998641              


Q ss_pred             eeEEEecccCcCEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q psy11350        355 RCIMFLEGHLKSVFSVDFSPDGY-HLATGSEDNAVKIWDLR  394 (471)
Q Consensus       355 ~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~  394 (471)
                      +++..-.||...|..+.|+|+.. .|+|.+.|+.+.||...
T Consensus       364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            23456678999999999999755 67888999999999976

>KOG0299|consensus

Probab=99.94  E-value=7.3e-25  Score=197.77  Aligned_cols=234  Identities=23%  Similarity=0.349  Sum_probs=198.4

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .+|...|.+++.||||+|||+|+.|..|.||+..+++.++.+.+|.+.|.+++|-....     -+++++.|++|++|++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~-----~lys~s~Drsvkvw~~  273 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS-----ELYSASADRSVKVWSI  273 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc-----ceeeeecCCceEEEeh
Confidence            48999999999999999999999999999999999999999999999999999987766     4999999999999999


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---cc-cccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---LA-NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +....+.++.+|.. .|..+....-++.+-+|+.|.+.++|..   .+ .+.++ .+.+-|++|-. ..+|++|+.+|.|
T Consensus       274 ~~~s~vetlyGHqd-~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~-~~sidcv~~In-~~HfvsGSdnG~I  350 (479)
T KOG0299|consen  274 DQLSYVETLYGHQD-GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG-EGSIDCVAFIN-DEHFVSGSDNGSI  350 (479)
T ss_pred             hHhHHHHHHhCCcc-ceeeechhcccceEEeccccceeEEEeccccceeeeeCC-CCCeeeEEEec-ccceeeccCCceE
Confidence            99999999999988 8999999999999999999999666543   22 33444 56799999985 4679999999999


Q ss_pred             EEEECCCCcEEEEee-CC-----------CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC----eeEEEecccCcCEE
Q psy11350        305 RLWDLNQGQEVLHQE-GH-----------GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG----RCIMFLEGHLKSVF  368 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~-~~-----------~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~  368 (471)
                      .+|++.+.+++.+.. .|           ...|++++..|...++++|+.+|.|++|-+..+    .++..+. -.+-|+
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVN  429 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVN  429 (479)
T ss_pred             EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEE
Confidence            999999988887653 12           237899999999999999999999999998877    4555555 568899


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEE
Q psy11350        369 SVDFSPDGYHLATG-SEDNAVKIW  391 (471)
Q Consensus       369 ~~~~sp~~~~l~s~-s~dg~i~iw  391 (471)
                      +++|+++|+.+++| +....+-=|
T Consensus       430 sl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEEccCCCEEEEeccccccccee
Confidence            99999999966655 444444333

>KOG0264|consensus

Probab=99.93  E-value=2.6e-25  Score=200.58  Aligned_cols=211  Identities=23%  Similarity=0.448  Sum_probs=173.1

Q ss_pred             ecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCC----------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        149 VGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPEC----------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      .-|.+.|+.+.+-|... .+|+++..+.|+|||..+.          .+-..+.+|...-.+++|++....    .|+++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g----~Lls~  196 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG----TLLSG  196 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce----eEeec
Confidence            45999999999999765 5667888999999998532          222378899987889999998764    79999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLG  296 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~  296 (471)
                      +.|++|++||+..........                               .+...+.+| ...|..++|++ +...|+
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~-------------------------------~p~~~~~~h-~~~VeDV~~h~~h~~lF~  244 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVV-------------------------------DPKTIFSGH-EDVVEDVAWHPLHEDLFG  244 (422)
T ss_pred             cCCCcEEEEeccccccCCccc-------------------------------cceEEeecC-Ccceehhhccccchhhhe
Confidence            999999999997553320000                               222334455 44799999999 556888


Q ss_pred             EEecCCeEEEEECC--CCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEE
Q psy11350        297 TCCWDHSWRLWDLN--QGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       297 ~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~  372 (471)
                      +++.|+.+.|||++  +.++.....+|..+|+|++|+| ++.+||+|+.|++|.+||+|+. +++.++.+|...|..|.|
T Consensus       245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W  324 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW  324 (422)
T ss_pred             eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence            99999999999999  5566777889999999999999 7778999999999999999975 678899999999999999


Q ss_pred             cCC-CCEEEEEeCCCcEEEEECCC
Q psy11350        373 SPD-GYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       373 sp~-~~~l~s~s~dg~i~iwd~~~  395 (471)
                      +|+ ...|++++.|+.+.|||+.+
T Consensus       325 SPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  325 SPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CCCCCceeEecccCCcEEEEeccc
Confidence            995 57889999999999999975

>KOG1273|consensus

Probab=99.93  E-value=1.7e-24  Score=186.53  Aligned_cols=245  Identities=18%  Similarity=0.199  Sum_probs=194.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL  234 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  234 (471)
                      -.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|.+++|+++|.     .|++++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-----~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-----KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-----EeeeecCCceeEEEeccCCCce
Confidence            78999999999999999999999999999999899999999999999999999     7999999999999999999999


Q ss_pred             eeecCCCCcceEEEEECCCCCEEEEEe-CCCe---EEeccccccccCC-----CCcceEEEEECCCCCEEEEEecCCeEE
Q psy11350        235 ANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS---WRLDTPLANLEGH-----EPFRVSRIKFHPSGRFLGTCCWDHSWR  305 (471)
Q Consensus       235 ~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~---~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~~~~dg~i~  305 (471)
                      +.+.-..  +|+.+.|+|.....+.++ .+..   +.+..+...+...     ......+..|.+.|+++++|...|.+.
T Consensus       101 ~rirf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  101 KRIRFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eEEEccC--ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            9887665  799999999765443333 2222   3333232222111     111233456899999999999999999


Q ss_pred             EEECCCCcEEEEeeCCC-CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-------e--eEEEecc--cCcCEEEEEEc
Q psy11350        306 LWDLNQGQEVLHQEGHG-KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-------R--CIMFLEG--HLKSVFSVDFS  373 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-------~--~~~~~~~--h~~~v~~~~~s  373 (471)
                      ++|..+.+++..+.-.. ..|..+.|+..|..|+..+.|..||.|+++.-       +  +.+.++.  ....-.+++|+
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            99999999988877655 78999999999999999999999999997621       1  1112211  12234578899


Q ss_pred             CCCCEEEEEeC-CCcEEEEECCCccchheecccC
Q psy11350        374 PDGYHLATGSE-DNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       374 p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                      .+|.|++.|+. -..++||.-..|.+++.+....
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             CCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence            99999988764 3569999999999999886655

>KOG1274|consensus

Probab=99.93  E-value=3.6e-24  Score=208.31  Aligned_cols=237  Identities=17%  Similarity=0.293  Sum_probs=197.9

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC-ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      +|+..-+.++|.|+|.+|++++.||.|++|+.... +...++..+...|.+++....       .|++|+.+++|.+|.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-------~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-------HFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-------ceEEeeccceEEEeeC
Confidence            69999999999999999999999999999997655 444444446777877776544       5999999999999999


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-----ccccccccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      .+++.-..+....- ++.+++|+-+|.+++.|+.|-.+.+     ......+.+| ..+|.++.|+|++++||+.+.||.
T Consensus        84 ps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen   84 PSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             CCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCEEEEEecCce
Confidence            87765443333332 8999999999999999999988776     2345567777 779999999999999999999999


Q ss_pred             EEEEECCCCcEEEEeeC--------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc--cCcCEEEEEEc
Q psy11350        304 WRLWDLNQGQEVLHQEG--------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG--HLKSVFSVDFS  373 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s  373 (471)
                      |++||+.++.+..++.+        ....+..++|+|+|..++..+.|+.|++|+...+.....+..  +...+..+.|+
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws  241 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS  241 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence            99999999877665543        134567899999988888888999999999999888777763  44459999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCC
Q psy11350        374 PDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       374 p~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      |+|+|||+++.||.|.|||.++
T Consensus       242 PnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  242 PNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999999999995

>KOG0640|consensus

Probab=99.93  E-value=1.1e-24  Score=187.23  Aligned_cols=249  Identities=18%  Similarity=0.283  Sum_probs=205.0

Q ss_pred             cccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ...++..++..|..+|+++.|+|....|++|+.|++|+++|.......+.++  ....+|.+|.|+|.|.     +|+.|
T Consensus       160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-----fllvg  234 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-----FLLVG  234 (430)
T ss_pred             cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-----eEEEe
Confidence            3457778888999999999999999999999999999999997543333222  2356899999999998     79999


Q ss_pred             eCCCcEEEEeCCCCcceeeec---CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-----c-ccCCCCcceEEEEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLE---GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-----N-LEGHEPFRVSRIKF  288 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-----~-~~~~~~~~v~~l~~  288 (471)
                      ..-.++++||+++-++...-.   .|. ..|+++.+++.|+..++++.||.+++|..+.     + -..|....|++..|
T Consensus       235 TdHp~~rlYdv~T~QcfvsanPd~qht-~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F  313 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCFVSANPDDQHT-GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF  313 (430)
T ss_pred             cCCCceeEEeccceeEeeecCcccccc-cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence            999999999999988765543   233 3899999999999999999999999987543     2 24566778999999


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCC-----CCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEec-
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG-----KPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLE-  361 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~-  361 (471)
                      ..+++++++.+.|..+++|.+.+++++....|-+     .--+...|+....+++.-. ..+.+.-||.+++..+..+. 
T Consensus       314 tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl  393 (430)
T KOG0640|consen  314 TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL  393 (430)
T ss_pred             ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence            9999999999999999999999999998876532     1223456776666666544 35678999999986655443 


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        362 GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       362 ~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +|++.+..+.-||.+.-+++|+.|-.+++|--+
T Consensus       394 gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  394 GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            899999999999999999999999999999644

>KOG0278|consensus

Probab=99.93  E-value=2.9e-25  Score=185.31  Aligned_cols=201  Identities=23%  Similarity=0.357  Sum_probs=172.4

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .|..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|.....     .+++.+.|++|++||.
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~-----~iLSSadd~tVRLWD~  172 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK-----CILSSADDKTVRLWDH  172 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc-----eEEeeccCCceEEEEe
Confidence            588899999999999999999999999999997654 5567889999999999998877     6888899999999999


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--EEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      .++..++++....  +|+++.++++|+++.++...+.  |..........-..+..|.+...+|+...+++|+.|..++.
T Consensus       173 rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~k  250 (334)
T KOG0278|consen  173 RTGTEVQSLEFNS--PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYK  250 (334)
T ss_pred             ccCcEEEEEecCC--CCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEE
Confidence            9999999888766  7999999999999888766555  33222211112223556999999999999999999999999


Q ss_pred             EECCCCcEEEEe-eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        307 WDLNQGQEVLHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       307 wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                      ||..++..+..+ .+|.++|.|+.|+|||...++|+.||+|+||.+..++..
T Consensus       251 fDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  251 FDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            999999988885 899999999999999999999999999999998766543

>KOG2048|consensus

Probab=99.93  E-value=3.3e-23  Score=195.37  Aligned_cols=240  Identities=18%  Similarity=0.269  Sum_probs=200.3

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eEEEeecC-CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-LVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      -..+|.|+||+.+.+.||.+-.+|.|.||++...- +...+.++ +..|-+++|.+.+.      |++.+.+|.|.-||+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R------LFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR------LFSSGLSGSITEWDL   97 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe------EEeecCCceEEEEec
Confidence            35789999999999999999999999999998653 33445544 56799999997664      999999999999999


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc---ccc---cccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT---PLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~---~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      .++++...+..... .|++++.+|.+..+++|+.||.+....   ...   .......++|.++.|+|++..++.|+.||
T Consensus        98 ~~lk~~~~~d~~gg-~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGG-AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             ccCceeEEecCCCc-ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence            99999988887766 999999999999999999999744311   111   11222356899999999999999999999


Q ss_pred             eEEEEECCCCcEEEEee--------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        303 SWRLWDLNQGQEVLHQE--------GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      .|++||..++..+....        +...-|.++.|-.++ .|++|...|+|.+||...+..+..+..|.+.|.+++..+
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~  255 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD  255 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC
Confidence            99999999988766221        122347788887664 789999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccc
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      ++.+++++|.|+.|.-+...+++.
T Consensus       256 ~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  256 NEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             CCCeEEEccCCCceEEEEecCCcc
Confidence            999999999999998888776644

>KOG1408|consensus

Probab=99.93  E-value=8.5e-25  Score=206.73  Aligned_cols=244  Identities=23%  Similarity=0.382  Sum_probs=210.2

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      +....|.+++.||+|++||+|..-|.++||++.+.+....+..|...|.|+.|+......  .+|++++.|..|.|||+.
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~--kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN--KLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh--HhhhhccCCceEEEEecc
Confidence            456789999999999999999999999999999999899999999999999998643211  279999999999999986


Q ss_pred             CC-cceeeecCCCCcceEEEEECCCC--CEEEEEeCCCeEEecccc-----ccccCC----CCcceEEEEECCCCCEEEE
Q psy11350        230 KD-TPLANLEGHEPFRVSRIKFHPSG--RFLGTCCWDHSWRLDTPL-----ANLEGH----EPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       230 ~~-~~~~~~~~~~~~~v~~~~~s~~~--~~i~~~~~d~~~~~~~~~-----~~~~~~----~~~~v~~l~~~~~~~~l~~  297 (471)
                      .+ .++.++.+|.. .|+++.|.-.|  ..+++++.|..+.+....     ..+..|    ....++.|+..|+.+++++
T Consensus       535 rny~l~qtld~HSs-sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSS-SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             cccchhhhhccccc-ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence            55 45667777776 89999998887  688999999885542211     111111    1346899999999999999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeC---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEG---HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      ++.|..|+|||+++++....|++   |.+....+...|.|.||++...|.++.++|.-+|+++..+.||...|+.+.|.+
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n  693 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN  693 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence            99999999999999999998865   667788899999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCc
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      |.++|++.+.||.|.||.+..-
T Consensus       694 DCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  694 DCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             cchhheeecCCceEEEEECchh
Confidence            9999999999999999998653

>KOG2445|consensus

Probab=99.93  E-value=1.5e-23  Score=180.26  Aligned_cols=243  Identities=19%  Similarity=0.334  Sum_probs=188.8

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ...+|..-|.++.|.+.|+++|+|+.|++|+|||..+    ..+....+.|.+.|..|.|.+..-.   ..+++++.|++
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG---qvvA~cS~Drt   84 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG---QVVATCSYDRT   84 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc---ceEEEEecCCc
Confidence            3458999999999999999999999999999999643    3566678899999999999764310   17999999999


Q ss_pred             EEEEeCCCC-------c--ceeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEecc-----------cccccc----
Q psy11350        223 VKLWSLDKD-------T--PLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLDT-----------PLANLE----  276 (471)
Q Consensus       223 i~iwd~~~~-------~--~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~-----------~~~~~~----  276 (471)
                      +.||.-...       +  ...++.... ..|+++.|.|.  |-.+++++.||.+++..           ....+.    
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            999974211       1  122233333 48999999996  67899999999988732           222222    


Q ss_pred             --CCCCcceEEEEECCC---CCEEEEEecC-----CeEEEEECCCC----cEEEEeeCCCCCeEEEEEeCC----CCEEE
Q psy11350        277 --GHEPFRVSRIKFHPS---GRFLGTCCWD-----HSWRLWDLNQG----QEVLHQEGHGKPVYCMSFQGD----GSVVA  338 (471)
Q Consensus       277 --~~~~~~v~~l~~~~~---~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~d----~~~l~  338 (471)
                        +....+..|+.|+|.   ..+|++|+.+     +.++||....+    ..+..+.+|..+|++++|.|+    ..+|+
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence              223446789999983   4578888866     47889976544    345567899999999999994    35899


Q ss_pred             EEeCCCeEEEEeCCCC--------------------eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        339 TGGLDAFGRVWDLRTG--------------------RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~--------------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +++.|| |+||.+...                    +.+..+.+|++.|..+.|+-.|..|++.|.||+|++|...
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            999999 999998731                    2445677899999999999999999999999999999864

>KOG0301|consensus

Probab=99.93  E-value=4.9e-24  Score=201.30  Aligned_cols=234  Identities=23%  Similarity=0.380  Sum_probs=203.8

Q ss_pred             eeeecCCcCeEE-EEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        146 CSQVGDTRPISY-CSFSP-DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       146 ~~~~gh~~~V~~-~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ..+.+|.+-|.+ +++-+ ++-+|++|+.|++|.+|.+.+..+..++++|...|.+++...++.      +++||.|.++
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~------~iSgSWD~Ta  124 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT------LISGSWDSTA  124 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc------eEecccccce
Confidence            456678888887 88875 455699999999999999999999999999999999998877664      8999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc---ccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      ++|-.  +++...+.+|.. .|+.+..-|++ .+++|+.|.++++|.   ...++.+| ...|+++++-+++ .|++++.
T Consensus       125 kvW~~--~~l~~~l~gH~a-sVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gH-tD~VRgL~vl~~~-~flScsN  198 (745)
T KOG0301|consen  125 KVWRI--GELVYSLQGHTA-SVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGH-TDCVRGLAVLDDS-HFLSCSN  198 (745)
T ss_pred             EEecc--hhhhcccCCcch-heeeeeecCCC-cEEeccCcceeeeccCCchhhhhccc-hhheeeeEEecCC-CeEeecC
Confidence            99985  667777888887 89999999999 899999999988865   46678888 5589999999864 5779999


Q ss_pred             CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEE
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  380 (471)
                      ||.|++|++ ++.++....+|...|++++..+++..+++++.|++++||+..  .+.+.+.-....|+++.+-++|. ++
T Consensus       199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Iv  274 (745)
T KOG0301|consen  199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IV  274 (745)
T ss_pred             CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EE
Confidence            999999999 789999999999999999988888899999999999999866  77777775556899999998887 67


Q ss_pred             EEeCCCcEEEEECCC
Q psy11350        381 TGSEDNAVKIWDLRK  395 (471)
Q Consensus       381 s~s~dg~i~iwd~~~  395 (471)
                      +|+.||.|+||..+.
T Consensus       275 vg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVDK  289 (745)
T ss_pred             EeccCceEEEEEecc
Confidence            888999999998874

>KOG0772|consensus

Probab=99.93  E-value=1.9e-24  Score=197.50  Aligned_cols=271  Identities=21%  Similarity=0.327  Sum_probs=188.1

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC----cceeeecCCCCcceEEEEECCCCCEEEEE
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD----TPLANLEGHEPFRVSRIKFHPSGRFLGTC  260 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~i~~~  260 (471)
                      .....+++|...|.++++.|.|.     .|++|+.|.+|++||+...    +....+.......|.+++|++.|..|++.
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~Ga-----R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv  232 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGA-----RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV  232 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCc-----eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence            34456788999999999999998     6999999999999998643    23334444444589999999999988887


Q ss_pred             eCCCeEEec-----------------cccccccCCCCcceEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEE-e---
Q psy11350        261 CWDHSWRLD-----------------TPLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLH-Q---  318 (471)
Q Consensus       261 ~~d~~~~~~-----------------~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~---  318 (471)
                      +......+.                 .......+| ...++|.+|+|.. ..|++++.||+++|||+...+.... +   
T Consensus       233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             ecCcceeEEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            766553331                 123344566 5579999999965 4799999999999999986543222 2   


Q ss_pred             --eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe---eEEEecccCc--CEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy11350        319 --EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR---CIMFLEGHLK--SVFSVDFSPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       319 --~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~dg~i~iw  391 (471)
                        .+..-+++.++|+|||++||+|+.||.|.+|+..+..   .+..-.+|..  .|+||.||++|++|++-|.|+++++|
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW  391 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW  391 (641)
T ss_pred             cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence              2334578999999999999999999999999975432   2233457876  89999999999999999999999999


Q ss_pred             ECCCcc-chheecc-cCCCccceeeccccceeeeecccCC-----Ccccccchhhhcccccceee-ecccceeeeecC
Q psy11350        392 DLRKRR-LLKWCTQ-LLPNSIGVTSLLTDLYIDVLESLNP-----GIGNIISSALKEQVEPIPLL-LDIQKLTFKFDS  461 (471)
Q Consensus       392 d~~~~~-~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~l~fs~dg  461 (471)
                      |+++.+ ++.+... ..+....=++++.+..+.+.-...+     +...++....-+.+..+.+. ..+..+.|+|.=
T Consensus       392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL  469 (641)
T ss_pred             eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence            999764 4543322 2333334444555555554433322     11223333333333444332 245566666643

>KOG0269|consensus

Probab=99.93  E-value=2.8e-25  Score=212.10  Aligned_cols=202  Identities=27%  Similarity=0.515  Sum_probs=167.0

Q ss_pred             eEEEEEec-CCCEEEEEeCCCcEEEEeCCC---CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        155 ISYCSFSP-DSQHVATASWSGLCKLWTVPE---CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       155 V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      +..+.|+. +.++|||++.+|.|.+||+..   .+.+..|..|...++++.|++...+    +|++|+.||+|++||++.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~----iliSGSQDg~vK~~DlR~  165 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN----ILISGSQDGTVKCWDLRS  165 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc----EEEecCCCceEEEEeeec
Confidence            34466763 357899999999999999976   4566678899999999999999887    999999999999999998


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecCCeEEEEEC
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDL  309 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~  309 (471)
                      .....++.+...                                       .|..|.|+| .+.+|+++...|.+.+||+
T Consensus       166 ~~S~~t~~~nSE---------------------------------------SiRDV~fsp~~~~~F~s~~dsG~lqlWDl  206 (839)
T KOG0269|consen  166 KKSKSTFRSNSE---------------------------------------SIRDVKFSPGYGNKFASIHDSGYLQLWDL  206 (839)
T ss_pred             ccccccccccch---------------------------------------hhhceeeccCCCceEEEecCCceEEEeec
Confidence            876666665433                                       588888888 5778999999999999999


Q ss_pred             CCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe--eEEEecccCcCEEEEEEcCCC-CEEEEEe--
Q psy11350        310 NQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR--CIMFLEGHLKSVFSVDFSPDG-YHLATGS--  383 (471)
Q Consensus       310 ~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~-~~l~s~s--  383 (471)
                      +.. ++...+..|.++|.|+.|+|++.+|||||.|+.|+|||+.+++  ++.++. ...+|.+++|-|.. .+|++++  
T Consensus       207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv  285 (839)
T KOG0269|consen  207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMV  285 (839)
T ss_pred             cCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhcc
Confidence            875 4567788999999999999999999999999999999998654  333443 34789999999965 4677765  


Q ss_pred             CCCcEEEEECCCccchh
Q psy11350        384 EDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~  400 (471)
                      .|-.|+|||++..-..+
T Consensus       286 ~dtsV~VWDvrRPYIP~  302 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPY  302 (839)
T ss_pred             ccceEEEEeeccccccc
Confidence            57789999998775544

>KOG0283|consensus

Probab=99.93  E-value=2.4e-24  Score=208.34  Aligned_cols=207  Identities=20%  Similarity=0.345  Sum_probs=154.0

Q ss_pred             EEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCC---------CCcceEEEEECC---C
Q psy11350        187 VQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH---------EPFRVSRIKFHP---S  253 (471)
Q Consensus       187 ~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~s~---~  253 (471)
                      .+.+. .|.+.|+++.|+++|.     |||+||.||.|+||.+........-...         ....+..+..++   .
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGK-----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGK-----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCc-----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence            34455 8999999999999999     8999999999999998552211000000         000011111111   0


Q ss_pred             CCE--EEEEeCCCeE--------EeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCC
Q psy11350        254 GRF--LGTCCWDHSW--------RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK  323 (471)
Q Consensus       254 ~~~--i~~~~~d~~~--------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  323 (471)
                      ++.  .-.+......        ....|...+.+| ...|..+.|+.+ ++|++++.|.+|++|++....++..|. |..
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GH-t~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd  410 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGH-TADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HND  410 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhcc-chhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCC
Confidence            000  0011111111        114678888999 568999999975 689999999999999999988888876 999


Q ss_pred             CeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        324 PVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       324 ~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      .|+|++|+| |.+++++|+.||.|+||++...+.+.-...+ .-|++++|.|||++.+.|+.+|.+++|+....++....
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            999999999 8899999999999999999887766555544 88999999999999999999999999999877766543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=8.6e-23  Score=191.30  Aligned_cols=249  Identities=15%  Similarity=0.085  Sum_probs=184.0

Q ss_pred             eeecCCcCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+.+|. .+.+++|+|+++.+ ++++.++.|++||+.+++....+..+.. +..++|+|++..    ++++++.++.|++
T Consensus        26 ~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~----l~~~~~~~~~l~~   99 (300)
T TIGR03866        26 TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKI----LYIANEDDNLVTV   99 (300)
T ss_pred             EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCE----EEEEcCCCCeEEE
Confidence            334443 36789999999977 5667789999999999988877765543 568899999872    3345567899999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe-EEe---ccccccccCCCCcceEEEEECCCCCEEEEE-ec
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WRL---DTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CW  300 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~  300 (471)
                      ||+.+++.+..+....  .+.+++|+|+|.+++++..++. +..   ..............+..++|+|++++|+++ ..
T Consensus       100 ~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866       100 IDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             EECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence            9999887777665432  4688999999999999887754 222   111110000012245779999999988655 46


Q ss_pred             CCeEEEEECCCCcEEEEeeCCC-------CCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHG-------KPVYCMSFQGDGSVVAT-GGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~d~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      ++.|++||+++++.+..+..+.       .....++|+|+++++++ .+.++.+.+||+++++.+..+. +...+.+++|
T Consensus       178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~  256 (300)
T TIGR03866       178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF  256 (300)
T ss_pred             CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence            8999999999988766554221       12346889999998655 4556789999999988776553 4457999999


Q ss_pred             cCCCCEEEEE-eCCCcEEEEECCCccchheecc
Q psy11350        373 SPDGYHLATG-SEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       373 sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +|+|++|+++ +.+|.|.+||+++++++..+..
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            9999999886 4689999999999999887753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283|consensus

Probab=99.93  E-value=7.7e-24  Score=180.83  Aligned_cols=206  Identities=18%  Similarity=0.337  Sum_probs=171.0

Q ss_pred             ecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCc----------eEEE-----eecCCCCEEEEEEeeCCCCCCcc
Q psy11350        149 VGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECE----------LVQT-----FRGHDCNVGAIEFHPLPSEGAVC  212 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~----------~~~~-----~~~h~~~v~~l~~~~~~~~~~~~  212 (471)
                      +.|.+.|+++.+.+. |+|+++|+.||.|.+||++...          .+..     -.+|.-.|..+.|.|....    
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----  115 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----  115 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----
Confidence            359999999999875 8899999999999999997532          1111     1268889999999998765    


Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC--
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP--  290 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~--  290 (471)
                      .+.+++.|.++++||..+.+....|+...                                        .|.+-+++|  
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~----------------------------------------~VYshamSp~a  155 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEG----------------------------------------KVYSHAMSPMA  155 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeecCc----------------------------------------eeehhhcChhh
Confidence            78999999999999999887777666433                                        466667777  


Q ss_pred             -CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCC-eeEEEe-------
Q psy11350        291 -SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTG-RCIMFL-------  360 (471)
Q Consensus       291 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~-~~~~~~-------  360 (471)
                       ..-++|+|..+-.|++.|+.+|.....+.||...|.++.|+|... .|++|+.||.|++||++.. .+...+       
T Consensus       156 ~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~  235 (397)
T KOG4283|consen  156 MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR  235 (397)
T ss_pred             hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence             345788899999999999999999999999999999999999655 5788999999999999854 333332       


Q ss_pred             -------cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        361 -------EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       361 -------~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                             ..|.+.|.+++|..++.++++++.|..+++|+..+|+.
T Consensus       236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence                   35677899999999999999999999999999988754

>KOG0294|consensus

Probab=99.92  E-value=2.6e-23  Score=179.26  Aligned_cols=201  Identities=19%  Similarity=0.271  Sum_probs=167.8

Q ss_pred             eeeecCCcCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQ--HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~--~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ..+..|.+.|+++.|.++-.  .|++|+.||.|.+|++....++.++++|.+.|+.++.+|.+.     +.++.+.|+.+
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-----LALsVg~D~~l  151 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-----LALSVGGDQVL  151 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-----eEEEEcCCcee
Confidence            45567999999999999875  899999999999999999999999999999999999999998     78899999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--EEeccccccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      +.||+-+|+.-.......  ..+.+.|+|.|.+++.++.++.  +.+...........+..+.++.|. ++..|++|..|
T Consensus       152 r~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~  228 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDN  228 (362)
T ss_pred             eeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCC
Confidence            999999888766665544  3455999999999999998876  333222111111112346677776 56789999999


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEE--eCCCCEEEEEeCCCeEEEEeCCCC
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSF--QGDGSVVATGGLDAFGRVWDLRTG  354 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~t~~~dg~i~iwd~~~~  354 (471)
                      +.|.+||.....+...+.+|...|.++.+  .|++.+|++++.||.|+|||++..
T Consensus       229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999999999999999999999999985  457889999999999999999866

>KOG0302|consensus

Probab=99.92  E-value=7.5e-24  Score=186.64  Aligned_cols=215  Identities=24%  Similarity=0.437  Sum_probs=172.4

Q ss_pred             ceeeeeecCCcCeEEEEEecCC--CEEEEEeCCCcEEEEeCC----------------CCceEEEeecCCCCEEEEEEee
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDS--QHVATASWSGLCKLWTVP----------------ECELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~--~~l~tg~~dg~i~iwd~~----------------~~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      .+.+...+|.+.|+.+.-++-+  .+.|+-+..|.|+||++.                ..+++.++.+|...=.+|+|+|
T Consensus       142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence            3445566899999988888765  455666778999999983                2456778889999999999999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceE
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVS  284 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~  284 (471)
                      ....    .|++|.--+.|++|...++.-.                                   .....+.+| ...|-
T Consensus       222 ~~~g----~LlsGDc~~~I~lw~~~~g~W~-----------------------------------vd~~Pf~gH-~~SVE  261 (440)
T KOG0302|consen  222 IKTG----RLLSGDCVKGIHLWEPSTGSWK-----------------------------------VDQRPFTGH-TKSVE  261 (440)
T ss_pred             cccc----ccccCccccceEeeeeccCcee-----------------------------------ecCcccccc-ccchh
Confidence            5442    5888888899999998776421                                   111233444 44799


Q ss_pred             EEEECCC-CCEEEEEecCCeEEEEECCCCc--EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---CeeEE
Q psy11350        285 RIKFHPS-GRFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT---GRCIM  358 (471)
Q Consensus       285 ~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~---~~~~~  358 (471)
                      .++|+|. ...|++|+.||+|+|||++.+.  .....+.|.+.|+.|.|+.+..+|++|+.||+++|||++.   ++++.
T Consensus       262 DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  262 DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             hhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence            9999995 4589999999999999999882  2333488999999999999888999999999999999985   57889


Q ss_pred             EecccCcCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc
Q psy11350        359 FLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      .++-|..+|++|.|+|. ...|+++|.|..|.+||+.--.
T Consensus       342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            99999999999999994 5678888999999999996443

>KOG0267|consensus

Probab=99.92  E-value=1.3e-25  Score=212.62  Aligned_cols=197  Identities=28%  Similarity=0.478  Sum_probs=183.6

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .++.||..+|.|+.|+++..+|++|+.+|+|++||+.+++.++++.+|...+..+.|+|.+.     ++++|+.|+.+++
T Consensus        64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~-----~~a~gStdtd~~i  138 (825)
T KOG0267|consen   64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE-----FFASGSTDTDLKI  138 (825)
T ss_pred             heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE-----Eecccccccccee
Confidence            35789999999999999999999999999999999999999999999999999999999998     7899999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEE
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR  305 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  305 (471)
                      ||.+...|.+.+.+|..                                       .+..+.|+|+|++++.++.|.+++
T Consensus       139 wD~Rk~Gc~~~~~s~~~---------------------------------------vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  139 WDIRKKGCSHTYKSHTR---------------------------------------VVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhhccCceeeecCCcc---------------------------------------eeEEEeecCCCceeeccCCcceee
Confidence            99988888888777543                                       588999999999999999999999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                      |||+..|+.+..|..|.+.+.++.|+|..-++++|+.|++|++||+++...+.........|.+.+|+|++..+++|...
T Consensus       180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            99999999999999999999999999999999999999999999999999988888888999999999999999988655


Q ss_pred             C
Q psy11350        386 N  386 (471)
Q Consensus       386 g  386 (471)
                      .
T Consensus       260 s  260 (825)
T KOG0267|consen  260 S  260 (825)
T ss_pred             h
Confidence            3

>KOG0647|consensus

Probab=99.92  E-value=1.4e-23  Score=179.91  Aligned_cols=249  Identities=17%  Similarity=0.207  Sum_probs=196.0

Q ss_pred             CcchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEe
Q psy11350        124 PEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFH  203 (471)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  203 (471)
                      ...+..+|.|+++..-.  .....+..|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|.
T Consensus        46 ~SWD~tVR~wevq~~g~--~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv  122 (347)
T KOG0647|consen   46 GSWDGTVRIWEVQNSGQ--LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWV  122 (347)
T ss_pred             cccCCceEEEEEecCCc--ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEe
Confidence            45667777777766411  111455679999999999999999999999999999999998 456678899999999999


Q ss_pred             eCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe---ccc---cccccC
Q psy11350        204 PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---DTP---LANLEG  277 (471)
Q Consensus       204 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---~~~---~~~~~~  277 (471)
                      +...   +.+|++|+.|.+|+.||.+...++.++....  .+.++..  ....++++..+..+.+   ..+   .+....
T Consensus       123 ~~~~---~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~S  195 (347)
T KOG0647|consen  123 PGMN---YQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIES  195 (347)
T ss_pred             cCCC---cceeEecccccceeecccCCCCeeeeeeccc--eeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence            8765   3379999999999999999888888877655  3444433  2345666666655333   222   223344


Q ss_pred             CCCcceEEEEECCCCCEEEEEecCCeEEEEECCCC--cEEEEeeCCC---------CCeEEEEEeCCCCEEEEEeCCCeE
Q psy11350        278 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG--QEVLHQEGHG---------KPVYCMSFQGDGSVVATGGLDAFG  346 (471)
Q Consensus       278 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~v~~~~~s~d~~~l~t~~~dg~i  346 (471)
                      .....+.||+..++....+.|+-.|.+-|..+..+  +.-..+..|.         -.|++|+|+|....|+|.+.||+.
T Consensus       196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF  275 (347)
T ss_pred             cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence            45667999999999998999999999999999876  3334455454         247889999988899999999999


Q ss_pred             EEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE
Q psy11350        347 RVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       347 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      .+||-.....+.+...|..+|++..|+.+|.+++-+
T Consensus       276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            999988888888888999999999999999988755

>KOG0268|consensus

Probab=99.92  E-value=3.4e-24  Score=187.91  Aligned_cols=308  Identities=17%  Similarity=0.271  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHhCCCcccccccccHHHHHHHHHHHHhhcCCCcchhhhhhHHHHhhc
Q psy11350         60 KDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATRTARNQELQKHL  139 (471)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (471)
                      ++.+|+.+.+-..+-+|..+-|.     -..|..+...+..++......          ........++.++.|++..  
T Consensus        36 e~~rEy~RALNAtKleR~fakPF-----v~~L~gHrdGV~~lakhp~~l----------s~~aSGs~DG~VkiWnlsq--   98 (433)
T KOG0268|consen   36 ERAREYTRALNATKLERVFAKPF-----VGSLDGHRDGVSCLAKHPNKL----------STVASGSCDGEVKIWNLSQ--   98 (433)
T ss_pred             hhHHHHHHHhhhHHHHHHhhccc-----hhhccccccccchhhcCcchh----------hhhhccccCceEEEEehhh--
Confidence            44556666555555555544442     133444444444333322211          0112233455566666543  


Q ss_pred             cccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                        .....++.+|.+.|..++++.  ..+++++.|.+|+.|-+.. .+++++.+ .+.+..|.-+..+.     .++|||.
T Consensus        99 --R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~-----~FaTcGe  167 (433)
T KOG0268|consen   99 --RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNS-----VFATCGE  167 (433)
T ss_pred             --hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccc-----cccccCc
Confidence              223446678999999999987  6788888899999999764 56777765 46677777776666     5888875


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCE-EEEEeCCCeEEec-----cccccccCCCCcceEEEEECCCCC
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLD-----TPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-i~~~~~d~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                        .|.|||.....++..+.-..+ .|.++.|+|.... |++|..|+.+.+.     .++..+..  ...-..|+|+|.+-
T Consensus       168 --~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeaf  242 (433)
T KOG0268|consen  168 --QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAF  242 (433)
T ss_pred             --eeeecccccCCccceeecCCC-ceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCcccc
Confidence              499999999999999988777 8999999998765 5556588886653     23322222  33567899999888


Q ss_pred             EEEEEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEEE
Q psy11350        294 FLGTCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVD  371 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~  371 (471)
                      .|.+|+.|..++.||++.. .++....+|...|.+++|||.|+-+++|+.|.+|+||..+.+...-.+. .-...|.|+.
T Consensus       243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk  322 (433)
T KOG0268|consen  243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK  322 (433)
T ss_pred             ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE
Confidence            8999999999999999875 4567788999999999999999999999999999999998876543332 1235799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      ||.|.+++++||+|+.|++|.....+.+-
T Consensus       323 ~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  323 YSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EeccccEEEecCCCcceeeeecchhhhcC
Confidence            99999999999999999999987655443

>KOG1408|consensus

Probab=99.92  E-value=3.6e-23  Score=195.84  Aligned_cols=188  Identities=16%  Similarity=0.231  Sum_probs=127.9

Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC---CCCEEEEEeCCCeEEEEeCCCC-eeE
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG---DGSVVATGGLDAFGRVWDLRTG-RCI  357 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~t~~~dg~i~iwd~~~~-~~~  357 (471)
                      .+.+++.+|+|++||+|..-|+++||++...+....+..|...|.|+.|+.   ..++|++++.|..|+|||+... .++
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~  540 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV  540 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence            478899999999999999999999999988888888899999999999986   3579999999999999998532 344


Q ss_pred             EEecccCcCE-------------------------------------------------EEEEEcCCCCEEEEEeCCCcE
Q psy11350        358 MFLEGHLKSV-------------------------------------------------FSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       358 ~~~~~h~~~v-------------------------------------------------~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      .++.+|...|                                                 +.|+..|..+++++++.|..|
T Consensus       541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni  620 (1080)
T KOG1408|consen  541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI  620 (1080)
T ss_pred             hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence            4555554444                                                 445556667788888888888


Q ss_pred             EEEECCCccchheecccCCCccceeeccccceeeeecccCC-Ccccccchhhhcccccce-eeecccceeeeecCCeEEE
Q psy11350        389 KIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNP-GIGNIISSALKEQVEPIP-LLLDIQKLTFKFDSDLHAM  466 (471)
Q Consensus       389 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~fs~dg~~lA~  466 (471)
                      +|||+.+++..+.|.........++.+..|+.-.++...-. ....++.-..++-+..+. ....++.+-|.+|=++|--
T Consensus       621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlIS  700 (1080)
T KOG1408|consen  621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLIS  700 (1080)
T ss_pred             EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhee
Confidence            88888888888888777666555555555544333332222 211122222222222211 1224566677777666655


Q ss_pred             eec
Q psy11350        467 VLN  469 (471)
Q Consensus       467 ~~~  469 (471)
                      ++.
T Consensus       701 vsg  703 (1080)
T KOG1408|consen  701 VSG  703 (1080)
T ss_pred             ecC
Confidence            543

>KOG1063|consensus

Probab=99.91  E-value=1.2e-22  Score=191.86  Aligned_cols=251  Identities=24%  Similarity=0.358  Sum_probs=195.1

Q ss_pred             cccceeeeeecCCcCeEEEEEecCCC---EEEEEeCCCcEEEEeCCCCc---------------------eEEE------
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDSQ---HVATASWSGLCKLWTVPECE---------------------LVQT------  189 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~~---~l~tg~~dg~i~iwd~~~~~---------------------~~~~------  189 (471)
                      ..+...+.+.||+..|.+++|...+.   +||++|.|..|+||.+.-+.                     ....      
T Consensus       179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence            36778889999999999999987654   78999999999999873211                     1111      


Q ss_pred             ----eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce--eeec----CCCCcceEEEEECCCCCEEEE
Q psy11350        190 ----FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL--ANLE----GHEPFRVSRIKFHPSGRFLGT  259 (471)
Q Consensus       190 ----~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~----~~~~~~v~~~~~s~~~~~i~~  259 (471)
                          +.||...|.++.|+|.+.     .|++++.|.++.+|...+..-+  ....    ++.........|+|+++.|++
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~-----~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~  333 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGL-----DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA  333 (764)
T ss_pred             hhhhhcCcccceEEEEEccchh-----hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence                238999999999999996     5999999999999987655322  1111    222335788889999998888


Q ss_pred             EeCCCeEEecc--------ccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC---------------------
Q psy11350        260 CCWDHSWRLDT--------PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN---------------------  310 (471)
Q Consensus       260 ~~~d~~~~~~~--------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~---------------------  310 (471)
                      -+..|.|++|.        ....+.+| -..|..++|+|.|.+|++.+.|.+-|+|-.-                     
T Consensus       334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c  412 (764)
T KOG1063|consen  334 HGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTC  412 (764)
T ss_pred             ecccCcEEEEeccCccceeeccccccc-cccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccccee
Confidence            88888877765        23345566 4478899999999888888888776665211                     


Q ss_pred             --------------------------------------------------------------------CCc---------
Q psy11350        311 --------------------------------------------------------------------QGQ---------  313 (471)
Q Consensus       311 --------------------------------------------------------------------~~~---------  313 (471)
                                                                                          +|.         
T Consensus       413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             eehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence                                                                                000         


Q ss_pred             ------------------------EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEecccC
Q psy11350        314 ------------------------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDA-----FGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       314 ------------------------~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg-----~i~iwd~~~~~~~~~~~~h~  364 (471)
                                              .+..+.||...|++++.+|+++++++++...     .|++|+..+......+.+|.
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs  572 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS  572 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence                                    0011247888899999999999999987543     59999999998888999999


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      -.|+.++|||||++|++.|.|.++.+|.....
T Consensus       573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~  604 (764)
T KOG1063|consen  573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED  604 (764)
T ss_pred             eEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence            99999999999999999999999999998543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=1.8e-21  Score=182.39  Aligned_cols=284  Identities=12%  Similarity=0.059  Sum_probs=196.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      +..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|++..    ++++++.++.|++||+.+++....+..+.  
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~----l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKL----LYVCASDSDTIQVIDLATGEVIGTLPSGP--   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCE----EEEEECCCCeEEEEECCCCcEEEeccCCC--
Confidence            35788999999999999999999888886644 678999999872    34677789999999999888777665543  


Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEecccc-----ccccCCCCcceEEEEECCCCCEEEEEecCC-eEEEEECCCCcEEE
Q psy11350        244 RVSRIKFHPSGRFLGTCC-WDHSWRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-SWRLWDLNQGQEVL  316 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~  316 (471)
                      .+..+.|+|+++.+++++ .++.+.++...     ..+..  ...+.+++|+|++.++++++.++ .+.+||..+++...
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence            356789999999876654 56775554322     11221  22467899999999999988765 57788998887665


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccC-------cCEEEEEEcCCCCEEEE-EeCCCc
Q psy11350        317 HQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHL-------KSVFSVDFSPDGYHLAT-GSEDNA  387 (471)
Q Consensus       317 ~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~sp~~~~l~s-~s~dg~  387 (471)
                      .... .....+++|+|++++|+++ ..++.|++||+.+++.+..+..+.       .....++|+|++++++. .+.++.
T Consensus       152 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~  230 (300)
T TIGR03866       152 NVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR  230 (300)
T ss_pred             EEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence            5433 3345789999999988554 469999999999998776654321       12356889999998654 456778


Q ss_pred             EEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeee
Q psy11350        388 VKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKF  459 (471)
Q Consensus       388 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~  459 (471)
                      |.+||+++++.+..+..  ......+++..+....+......+...++.......+..++.......|+|+|
T Consensus       231 i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       231 VAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             EEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            99999998887765432  22233344444544433322233444455444444455555555556666654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106|consensus

Probab=99.91  E-value=5.1e-22  Score=181.23  Aligned_cols=304  Identities=18%  Similarity=0.243  Sum_probs=220.7

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCC--------cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSG--------LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg--------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      .||+..|.|++.+||.-.+++|-..|        .+++||..+...+..+......|.|++|++.+..... ..+--+.+
T Consensus       101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l-~~vD~s~~  179 (626)
T KOG2106|consen  101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLL-CAVDDSNP  179 (626)
T ss_pred             cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceE-EEecCCCc
Confidence            38999999999999988888776555        5999998888888888777889999999997653111 22334556


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc--------ccccccCCCCcceEEEEECCCC
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT--------PLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~--------~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      ..+.+||...+......+.... .+....|+|.+..+++....+.+.+|.        ....+..+...-|.|++|.++|
T Consensus       180 h~lSVWdWqk~~~~~~vk~sne-~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng  258 (626)
T KOG2106|consen  180 HMLSVWDWQKKAKLGPVKTSNE-VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG  258 (626)
T ss_pred             cccchhhchhhhccCcceeccc-eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC
Confidence            7799999988877777766665 788999999888776666666544432        2334555555679999999988


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe-----------------
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-----------------  355 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~-----------------  355 (471)
                      . +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+                 
T Consensus       259 d-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  259 D-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             C-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe
Confidence            6 66999999999999988888777779999999999999997665 9999999999832100                 


Q ss_pred             -----------------------eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc--------
Q psy11350        356 -----------------------CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ--------  404 (471)
Q Consensus       356 -----------------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------  404 (471)
                                             ......+|......++.+|+...++|++.|+.+++|+  ..+++.+...        
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~  414 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECAD  414 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEee
Confidence                                   0011246778899999999999999999999999999  4555443322        


Q ss_pred             cCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        405 LLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       405 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      .+|.+ .++.....+...+++.           .....+..-....+++.+.|+|||.+|||.+.+
T Consensus       415 fhpsg-~va~Gt~~G~w~V~d~-----------e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  415 FHPSG-VVAVGTATGRWFVLDT-----------ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             ccCcc-eEEEeeccceEEEEec-----------ccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence            22333 1111122223333322           222222222335577889999999999998754

>KOG0308|consensus

Probab=99.91  E-value=1.1e-23  Score=197.56  Aligned_cols=264  Identities=19%  Similarity=0.228  Sum_probs=214.0

Q ss_pred             CcchhhhhhHHHHhhccc--cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEeecCCCCEEE
Q psy11350        124 PEATRTARNQELQKHLTS--LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC--ELVQTFRGHDCNVGA  199 (471)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~--~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~  199 (471)
                      +..+..++.|........  -+...++..|+..|+.+....+|+.|++++.|-+|++|+...+  -+..++..|...|.|
T Consensus        43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkc  122 (735)
T KOG0308|consen   43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKC  122 (735)
T ss_pred             cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhee
Confidence            444555555554333221  2234566789999999999999999999999999999999876  577788999999999


Q ss_pred             EEE-eeCCCCCCccEEEEEeCCCcEEEEeCCCC--cceeee--------c-CCCCcceEEEEECCCCCEEEEEeCCCeEE
Q psy11350        200 IEF-HPLPSEGAVCSLASCAQDGSVKLWSLDKD--TPLANL--------E-GHEPFRVSRIKFHPSGRFLGTCCWDHSWR  267 (471)
Q Consensus       200 l~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~--------~-~~~~~~v~~~~~s~~~~~i~~~~~d~~~~  267 (471)
                      +++ .++..     ++++||-|+.|.+||++++  +.+..+        . ++. ..|++++-++.|..|++|+..+.++
T Consensus       123 la~~ak~~~-----lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k-~siYSLA~N~t~t~ivsGgtek~lr  196 (735)
T KOG0308|consen  123 LAYIAKNNE-----LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK-DSIYSLAMNQTGTIIVSGGTEKDLR  196 (735)
T ss_pred             eeecccCce-----eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc-cceeeeecCCcceEEEecCcccceE
Confidence            999 55554     8999999999999999977  233222        2 333 3899999999999999999999988


Q ss_pred             eccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy11350        268 LDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL  342 (471)
Q Consensus       268 ~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~  342 (471)
                      +|.+     ...+.+| ...|..+..+++|..+++++.||+|++||+...+++.++..|...|.++..+|+-..+++|+.
T Consensus       197 ~wDprt~~kimkLrGH-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  197 LWDPRTCKKIMKLRGH-TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             Eeccccccceeeeecc-ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence            8765     3457788 558999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        343 DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       343 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ||.|+.=|+++......+.....+|..+..+...+-+-+++.|+.|+-|-+.
T Consensus       276 d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  276 DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            9999999999854333333355677777777544555677788899988765

>KOG1063|consensus

Probab=99.91  E-value=3.8e-22  Score=188.60  Aligned_cols=247  Identities=22%  Similarity=0.393  Sum_probs=196.8

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEE-----eecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC--ELVQT-----FRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~-----~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      +.||...|.++.|+|.+..|++++.|.++.+|...+.  --+..     ..+......+..|+|+++     .+++-+.-
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-----~ii~~g~~  337 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-----VIIAHGRT  337 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-----EEEEeccc
Confidence            4599999999999999999999999999999987543  22222     224455688999999997     78999999


Q ss_pred             CcEEEEeCCC-C--cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc---------------------------
Q psy11350        221 GSVKLWSLDK-D--TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT---------------------------  270 (471)
Q Consensus       221 g~i~iwd~~~-~--~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~---------------------------  270 (471)
                      |..++|.... .  .+...+.+|.+ .|.+++|+|.|.++++.+.|.+-++..                           
T Consensus       338 Gg~hlWkt~d~~~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  338 GGFHLWKTKDKTFWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             CcEEEEeccCccceeeccccccccc-cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            9999998322 1  23344556766 899999999999999999887622200                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy11350        271 --------------------------------------------------------------------------------  270 (471)
Q Consensus       271 --------------------------------------------------------------------------------  270 (471)
                                                                                                      
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence                                                                                            


Q ss_pred             --------------------ccccccCCCCcceEEEEECCCCCEEEEEecCC-----eEEEEECCCCcEEEEeeCCCCCe
Q psy11350        271 --------------------PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-----SWRLWDLNQGQEVLHQEGHGKPV  325 (471)
Q Consensus       271 --------------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v  325 (471)
                                          .+..+.+| ...|++++.+|+++++|+++...     .|++|+..+...+..+.+|.-.|
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV  575 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence                                00001112 22699999999999999998754     49999999988888999999999


Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEeCCCCe----eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--cch
Q psy11350        326 YCMSFQGDGSVVATGGLDAFGRVWDLRTGR----CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR--RLL  399 (471)
Q Consensus       326 ~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~  399 (471)
                      +.++|||||++|++.+.|.++.+|......    .....+.|..-|.++.|+|++.+|+|+|.|.+|+||.....  +.+
T Consensus       576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i  655 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI  655 (764)
T ss_pred             EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence            999999999999999999999999875432    12336789999999999999999999999999999999887  444


Q ss_pred             he
Q psy11350        400 KW  401 (471)
Q Consensus       400 ~~  401 (471)
                      ..
T Consensus       656 ~~  657 (764)
T KOG1063|consen  656 SR  657 (764)
T ss_pred             hh
Confidence            43

>KOG0270|consensus

Probab=99.91  E-value=5.7e-23  Score=184.82  Aligned_cols=232  Identities=19%  Similarity=0.299  Sum_probs=183.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCC---ceE------------------EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPEC---ELV------------------QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~---~~~------------------~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      |+|+|.|+.+-.|.|||+.=.   .+.                  ..-.+|+..|..++|+..-.+    +|++||.|.+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n----VLaSgsaD~T  267 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN----VLASGSADKT  267 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce----eEEecCCCce
Confidence            679999999999999998411   000                  112368888999999988776    8999999999


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCC-CCEEEEEeCCCeEEeccccc----cccCCCCcceEEEEECCCC-CEEE
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLDTPLA----NLEGHEPFRVSRIKFHPSG-RFLG  296 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~i~~~~~d~~~~~~~~~~----~~~~~~~~~v~~l~~~~~~-~~l~  296 (471)
                      |++||+.++++..++..|.+ .|.++.|+|. ..++++|+.|+++.+.....    ...-...+.|-.++|.|.. ..++
T Consensus       268 V~lWD~~~g~p~~s~~~~~k-~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSITHHGK-KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             EEEEEcCCCCcceehhhcCC-ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence            99999999999999997766 9999999996 56889999999988754432    1111223468899999954 4788


Q ss_pred             EEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCee--EEEecccCcCEEEEEE
Q psy11350        297 TCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRC--IMFLEGHLKSVFSVDF  372 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~  372 (471)
                      +++.||+|+-+|++.. +++.++..|..+|.++++++ ...++++++.|+.|++|++....+  +..-.-..+...|+++
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~  426 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFAL  426 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeeccc
Confidence            8899999999999986 89999999999999999988 456899999999999999865433  2211112244677788


Q ss_pred             cCCC-CEEEEEeCCCcEEEEECCCccchh
Q psy11350        373 SPDG-YHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       373 sp~~-~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      .|+- .+++.|+..+.++|||+.+...+.
T Consensus       427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  427 DPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             CCCcceEEEecCccceEEEeecccChhHH
Confidence            8864 467788888889999999887664

>KOG1445|consensus

Probab=99.91  E-value=6.7e-23  Score=191.64  Aligned_cols=149  Identities=21%  Similarity=0.333  Sum_probs=125.6

Q ss_pred             ceEEEEECC-CCCEEEEEecCCeEEEEECCCC-------cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCC
Q psy11350        282 RVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQG-------QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       282 ~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~  352 (471)
                      .|+.+.|.| |...|++++.||.|++|-+..+       .+-..+..|...|+++.|+| -...|++++.|-+|++||++
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            377889999 7778999999999999998754       34456789999999999999 45689999999999999999


Q ss_pred             CCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-chheecccCCCccceeeccccceeeeecccCCC
Q psy11350        353 TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR-LLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPG  430 (471)
Q Consensus       353 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  430 (471)
                      +++....+.+|.+.|.+++|||+|+.+++.+.||+|+||+-+++. +++.-..+......-+.+..|.++.+...++..
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            999999999999999999999999999999999999999988764 555555555555566666777777777666553

>KOG0300|consensus

Probab=99.91  E-value=1.2e-22  Score=175.32  Aligned_cols=245  Identities=20%  Similarity=0.317  Sum_probs=203.8

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeC------CC------------------------------C----
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTV------PE------------------------------C----  184 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~------~~------------------------------~----  184 (471)
                      ...+.||.+.|++++|++.+.++++++.|++..||..      +.                              +    
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            3456799999999999999999999999999999962      11                              0    


Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  264 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~  264 (471)
                      .++..+.+|.+.|.+..|...+.     .+++++.|.+..+||++++..+..+.+|.. ..+.++-+|..+++++.+.|.
T Consensus       263 vPl~~ltgH~~vV~a~dWL~gg~-----Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQrLVvTsSrDt  336 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDWLAGGQ-----QMVTASWDRTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQRLVVTSSRDT  336 (481)
T ss_pred             eeeeeeeccccceEehhhhcCcc-----eeeeeeccccceeeeeccCceeccccCcch-hccccccCCcceEEEEeccCc
Confidence            12456789999999999999888     699999999999999999999999999987 899999999999999999999


Q ss_pred             eEEeccc------cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE
Q psy11350        265 SWRLDTP------LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       265 ~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                      ++++|.-      +..+.+| ...|+++.|..+. .+++|+.|.+|++||+++.+..........+++.++.+..+..|+
T Consensus       337 TFRLWDFReaI~sV~VFQGH-tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  337 TFRLWDFREAIQSVAVFQGH-TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             eeEeccchhhcceeeeeccc-ccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEE
Confidence            9888643      4567888 5589999999764 588999999999999998764443334678899999998888888


Q ss_pred             EEeCCCeEEEEeCCCCeeE----EEecccCcCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCcc
Q psy11350        339 TGGLDAFGRVWDLRTGRCI----MFLEGHLKSVFSVDFSPDG--YHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~~~~sp~~--~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      .--.+..|++||+...+..    ..-++|...|+|++|..+.  .-|++|+-|..+.=|.+....
T Consensus       415 iPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  415 IPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            8888888999999644322    1335899999999998643  358899999999999987543

>KOG0639|consensus

Probab=99.90  E-value=6.9e-23  Score=186.71  Aligned_cols=275  Identities=21%  Similarity=0.336  Sum_probs=201.4

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC---ELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ..|..-|.++.+|...++++||+ .|.|+|||+...   .++..+.  .....|.++..+|++.     .|++|+.-.++
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-----tLivGGeastl  489 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-----TLIVGGEASTL  489 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-----eEEecccccee
Confidence            36888999999999999999999 899999999642   2333332  2356789999999998     69999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      .|||+....+.........                                     .-....++.+||.+..+++..||.
T Consensus       490 siWDLAapTprikaeltss-------------------------------------apaCyALa~spDakvcFsccsdGn  532 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSS-------------------------------------APACYALAISPDAKVCFSCCSDGN  532 (705)
T ss_pred             eeeeccCCCcchhhhcCCc-------------------------------------chhhhhhhcCCccceeeeeccCCc
Confidence            9999976543322221110                                     124678999999999999999999


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      |.|||+.+...++.+.+|...+.||.+++||..|-||+.|++||.||+++++.+.... ....|.++..+|++.+|+.|-
T Consensus       533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec
Confidence            9999999999999999999999999999999999999999999999999998776544 567899999999999999999


Q ss_pred             CCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccC-CCcccccchhhhcccccceeeecccceeeeecCC
Q psy11350        384 EDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLN-PGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSD  462 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~  462 (471)
                      .++.+.|-.....+..+ +.   .+...++++-+...-..|.+.. .+..+.+....+..+...+-...+.....|.|.+
T Consensus       612 ens~vevlh~skp~kyq-lh---lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddk  687 (705)
T KOG0639|consen  612 ENSNVEVLHTSKPEKYQ-LH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDK  687 (705)
T ss_pred             ccCcEEEEecCCcccee-ec---ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCce
Confidence            99998887765443221 11   1122222322211111111111 1222233334444444444455667778889999


Q ss_pred             eEEEeecCC
Q psy11350        463 LHAMVLNQK  471 (471)
Q Consensus       463 ~lA~~~~~~  471 (471)
                      ++.+.+.+|
T Consensus       688 yIVTGSGdk  696 (705)
T KOG0639|consen  688 YIVTGSGDK  696 (705)
T ss_pred             EEEecCCCc
Confidence            998888764

>KOG4328|consensus

Probab=99.90  E-value=5.2e-22  Score=179.25  Aligned_cols=257  Identities=21%  Similarity=0.281  Sum_probs=197.2

Q ss_pred             eeeeeecCCcCeEEEEEecCC--CEEEEEeCCCcEEEEeCCC----CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDS--QHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~--~~l~tg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      .....+-|.++|++++|+|..  +++|+|...|+|-+||+.+    ...+..+..|..+|.+|.|+|.+..    .+++.
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ss  253 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSS  253 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeee
Confidence            334456789999999999975  4788999999999999952    2345567789999999999999875    79999


Q ss_pred             eCCCcEEEEeCCCCcceeeecC-CCCcceEEEEECCCCCEEEEEeCCCe---EEeccc---cccccCCCCcceEEEEECC
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEG-HEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDTP---LANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~i~~~~~d~~---~~~~~~---~~~~~~~~~~~v~~l~~~~  290 (471)
                      +.||+|++-|++.+.....+.. .....+.++.|+.+...++++..=|.   |+....   ...+..| ...|++|+++|
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh-~kKI~sv~~NP  332 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH-KKKITSVALNP  332 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh-hcccceeecCC
Confidence            9999999999987643332222 12236788899998888888877664   333322   3344555 34899999999


Q ss_pred             CC-CEEEEEecCCeEEEEECCCCc----EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC----CCeeEEEec
Q psy11350        291 SG-RFLGTCCWDHSWRLWDLNQGQ----EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR----TGRCIMFLE  361 (471)
Q Consensus       291 ~~-~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~----~~~~~~~~~  361 (471)
                      -. .+|++++.|++++|||++...    ++.....|...|.+..|||.+..|+|.+.|..|+|||..    .-.+..++.
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence            55 479999999999999998643    345566799999999999987779999999999999983    233343433


Q ss_pred             ccCc------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC
Q psy11350        362 GHLK------SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       362 ~h~~------~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                       |..      ......|.|+..++++|-.-..|-|+|-..++.+..+..+.
T Consensus       413 -Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~  462 (498)
T KOG4328|consen  413 -HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE  462 (498)
T ss_pred             -ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence             332      24456899999999999999999999999988777655443

>KOG0650|consensus

Probab=99.90  E-value=1.7e-22  Score=187.88  Aligned_cols=249  Identities=24%  Similarity=0.325  Sum_probs=194.4

Q ss_pred             hhccccceeee--eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        137 KHLTSLSIYCS--QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       137 ~~~~~~~~~~~--~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      +.+++|+..|.  ++||++.|.|++..|.|.+|++|+.||+|+||.+.+|.+++++.. .+.|.||+|+|.+..   ++|
T Consensus       383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~---~vL  458 (733)
T KOG0650|consen  383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDL---CVL  458 (733)
T ss_pred             hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCc---eeE
Confidence            34556666554  589999999999999999999999999999999999999998864 578999999998863   233


Q ss_pred             EEEeCCCcEEEEeCCCCc---------c----------------------------eeeecCCCCcceEEEEECCCCCEE
Q psy11350        215 ASCAQDGSVKLWSLDKDT---------P----------------------------LANLEGHEPFRVSRIKFHPSGRFL  257 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~---------~----------------------------~~~~~~~~~~~v~~~~~s~~~~~i  257 (471)
                      +.+ ....+.|.+..-|.         .                            ++....+ ...|..+.|+..|.||
T Consensus       459 AvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYl  536 (733)
T KOG0650|consen  459 AVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYL  536 (733)
T ss_pred             EEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceE
Confidence            333 33335554432110         0                            1111112 2378999999999999


Q ss_pred             EEEeCCCe---EEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEE
Q psy11350        258 GTCCWDHS---WRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS  329 (471)
Q Consensus       258 ~~~~~d~~---~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  329 (471)
                      ++...++.   +.+.+.     ...+.. ..+.|.++.|+|...+|++++ ...|+|||+..+..+..+......|..++
T Consensus       537 atV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMS  614 (733)
T ss_pred             EEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence            99887654   333221     112222 245699999999999999888 56799999998887777777778899999


Q ss_pred             EeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        330 FQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       330 ~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      ++|.|.-|+.|+.|+.+..+|+.-+ ++.+++..|...+++++|++.-.+|++|+.||++.|+.-
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            9999999999999999999999755 677888999999999999999899999999999999853

>KOG1036|consensus

Probab=99.89  E-value=4.9e-21  Score=165.03  Aligned_cols=224  Identities=19%  Similarity=0.257  Sum_probs=180.7

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.||.+++...     .+++|+.|++|++||.+
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~-----~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVG-----CVISGSWDKTIKFWDPR  124 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCC-----eEEEcccCccEEEEecc
Confidence            4899999999987 467899999999999999887654 4567999999999998776     69999999999999998


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec---cccc---cccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD---TPLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~---~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      .......+....  .|.++..  .|+.|++|+.+..+.++   ....   ......+..+.++++-|++.-+++++-||.
T Consensus       125 ~~~~~~~~d~~k--kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR  200 (323)
T KOG1036|consen  125 NKVVVGTFDQGK--KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR  200 (323)
T ss_pred             ccccccccccCc--eEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence            755555555444  5666554  57788898888774443   2222   223444667999999998888999999999


Q ss_pred             EEEEECCCC----cEEEEeeCCC---------CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        304 WRLWDLNQG----QEVLHQEGHG---------KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       304 i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                      |.+=.++..    ..-..+..|.         -||++|+|+|-...|+||+.||.|.+||+.+.+.+..+......|.++
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl  280 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL  280 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEE
Confidence            988777655    2334444442         379999999998899999999999999999999999888877889999


Q ss_pred             EEcCCCCEEEEEeC
Q psy11350        371 DFSPDGYHLATGSE  384 (471)
Q Consensus       371 ~~sp~~~~l~s~s~  384 (471)
                      +|+.+|..||.++.
T Consensus       281 sfs~dG~~LAia~s  294 (323)
T KOG1036|consen  281 SFSMDGSLLAIASS  294 (323)
T ss_pred             EeccCCCeEEEEec
Confidence            99999999999874

>KOG2919|consensus

Probab=99.89  E-value=4.6e-21  Score=166.01  Aligned_cols=246  Identities=20%  Similarity=0.306  Sum_probs=184.7

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCC------------ceEEEee-cCCCCEEEEEEeeCCC--CCCccEEEEEeC
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPEC------------ELVQTFR-GHDCNVGAIEFHPLPS--EGAVCSLASCAQ  219 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~------------~~~~~~~-~h~~~v~~l~~~~~~~--~~~~~~l~s~~~  219 (471)
                      ...+.|||||..|++-+.|..+.+|+++..            +...+++ .....|...+|-+.-+  .-..+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            346789999999999999999999998521            1111222 1235677888874321  112337999999


Q ss_pred             CCcEEEEeCCCCcceeeecCCCC----cceEEEEECCCCCEEEEEeCCCe--EEeccccc-----cc----cCCCCcceE
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEP----FRVSRIKFHPSGRFLGTCCWDHS--WRLDTPLA-----NL----EGHEPFRVS  284 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~i~~~~~d~~--~~~~~~~~-----~~----~~~~~~~v~  284 (471)
                      +.-|++||.-+|+....+..-..    ....+++|+|||..|++|.....  +++..+-+     ..    +....+-+.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            99999999999988877764331    25679999999999999876654  22211111     11    111245689


Q ss_pred             EEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCC-eeEEEec
Q psy11350        285 RIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTG-RCIMFLE  361 (471)
Q Consensus       285 ~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~-~~~~~~~  361 (471)
                      +++|+| +...+++++...++-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||++.. .++..+.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~  291 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE  291 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence            999999 4558999999999999998888999999999999999999999999999985 678999999864 5667777


Q ss_pred             ccCc-CEEE--EEEcCCCCEEEEEeCCCcEEEEECCC-ccchh
Q psy11350        362 GHLK-SVFS--VDFSPDGYHLATGSEDNAVKIWDLRK-RRLLK  400 (471)
Q Consensus       362 ~h~~-~v~~--~~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~  400 (471)
                      .|.+ .-..  +...|++++|++|+.||.|++||++. +..+.
T Consensus       292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            7765 2223  45568899999999999999999987 55443

>KOG0639|consensus

Probab=99.89  E-value=3.1e-22  Score=182.43  Aligned_cols=234  Identities=20%  Similarity=0.284  Sum_probs=198.9

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      ..-|.++.+.|||+.|++|++-.++.|||+.....  ...+....-...+++.+|+.+     +.++|..||.|.|||+.
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak-----vcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-----VCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-----eeeeeccCCcEEEEEcc
Confidence            34578889999999999999999999999975433  333443344567899999998     78899999999999999


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---cccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      +...+..|++|.+ .+.|+.+++||..|-+|+-|.+++.|..   ...........|.++.++|++.++++|-.++.+.|
T Consensus       540 nq~~VrqfqGhtD-GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  540 NQTLVRQFQGHTD-GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             cceeeecccCCCC-CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEE
Confidence            9999999999998 8999999999999999999999666543   33333334567999999999999999999999999


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       307 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      ...... ....+..|...|.++.|.+-|+++++.+.|+.+..|...-|..+...+ -..+|.++.+|.|.++++||+.|.
T Consensus       619 lh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  619 LHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             EecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence            887543 345566799999999999999999999999999999999898887766 457899999999999999999999


Q ss_pred             cEEEEEC
Q psy11350        387 AVKIWDL  393 (471)
Q Consensus       387 ~i~iwd~  393 (471)
                      .-.||.+
T Consensus       697 kATVYeV  703 (705)
T KOG0639|consen  697 KATVYEV  703 (705)
T ss_pred             ceEEEEE
Confidence            8888865

>KOG1539|consensus

Probab=99.89  E-value=8.2e-22  Score=189.98  Aligned_cols=198  Identities=25%  Similarity=0.323  Sum_probs=178.5

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe---ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF---RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ....+++++.++.|++.+.|...|.|-+||+.+|-....|   ..|..+|++++....+.     .+++++.+|.+++||
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-----~~vsa~~~Gilkfw~  521 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-----LLVSAGADGILKFWD  521 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-----eEEEccCcceEEEEe
Confidence            4478999999999999999999999999999999988888   58999999999988887     799999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW  307 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw  307 (471)
                      ..+...+..+....                                        .+.++.++.....++.+..|-.|+++
T Consensus       522 f~~k~l~~~l~l~~----------------------------------------~~~~iv~hr~s~l~a~~~ddf~I~vv  561 (910)
T KOG1539|consen  522 FKKKVLKKSLRLGS----------------------------------------SITGIVYHRVSDLLAIALDDFSIRVV  561 (910)
T ss_pred             cCCcceeeeeccCC----------------------------------------CcceeeeeehhhhhhhhcCceeEEEE
Confidence            98876655554332                                        47788888888899999999999999


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC-C
Q psy11350        308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED-N  386 (471)
Q Consensus       308 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-g  386 (471)
                      |..+.+.++.+.+|++.|++++|||||++|++++.|++|++||+.++.++-.+. -..+.+++.|+|+|.+|||...| .
T Consensus       562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQN  640 (910)
T ss_pred             EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence            999999999999999999999999999999999999999999999999987765 55789999999999999999988 6


Q ss_pred             cEEEEECC
Q psy11350        387 AVKIWDLR  394 (471)
Q Consensus       387 ~i~iwd~~  394 (471)
                      -|++|--+
T Consensus       641 gIylWsNk  648 (910)
T KOG1539|consen  641 GIYLWSNK  648 (910)
T ss_pred             eEEEEEch
Confidence            79999743

>KOG2055|consensus

Probab=99.89  E-value=1.7e-21  Score=176.07  Aligned_cols=232  Identities=21%  Similarity=0.273  Sum_probs=179.9

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC--cceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEec-
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD--TPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLD-  269 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~-  269 (471)
                      .++|+++.|+|..+     ++++++.||+++||.++..  ..+..+... ..+|.+..|.|+|. .+++++....+..+ 
T Consensus       213 ~~~I~sv~FHp~~p-----lllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-----LLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             cCCceEEEecCCCc-----eEEEecCCCcEEEEEecCccChhheeeeec-cCccceeeecCCCceEEEecccceEEEEee
Confidence            47899999999998     8999999999999988533  334444333 34899999999999 77777776664332 


Q ss_pred             ------cccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC
Q psy11350        270 ------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD  343 (471)
Q Consensus       270 ------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d  343 (471)
                            ..+....++....+.....+|++++|+..+..|.|.+....+++.+..+. -.+.|..++|+.|++.|++++.+
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT  365 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence                  22334445544467888999999999999999999999999998887776 46789999999999999999999


Q ss_pred             CeEEEEeCCCCeeEEEecccCcCE--EEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeecccccee
Q psy11350        344 AFGRVWDLRTGRCIMFLEGHLKSV--FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYI  421 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~~h~~~v--~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  421 (471)
                      |.|++||++...++..+.. .+.|  ++++.+++|.|||+||..|.|.|||.++-..-     ..|.+            
T Consensus       366 GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s-----~~PkP------------  427 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS-----TNPKP------------  427 (514)
T ss_pred             ceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhcc-----CCCCc------------
Confidence            9999999999999988873 3333  56778899999999999999999997642110     00000            


Q ss_pred             eeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        422 DVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                                          ..........|+.|.|+||+++||||++-
T Consensus       428 --------------------ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~  456 (514)
T KOG2055|consen  428 --------------------IKTVDNLTTAITSLQFNHDAQILAIASRV  456 (514)
T ss_pred             --------------------hhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence                                00111344568899999999999999874

>KOG2106|consensus

Probab=99.89  E-value=2.3e-20  Score=170.53  Aligned_cols=258  Identities=22%  Similarity=0.225  Sum_probs=192.1

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      +.-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...++.      |++|+.|..|..|| ..-
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt------llSGgKDRki~~Wd-~~y  317 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT------LLSGGKDRKIILWD-DNY  317 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc------EeecCccceEEecc-ccc
Confidence            36799999999986 77999999999999988888887779999999999999996      88899999999999 333


Q ss_pred             cceeeecCCCC-cceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        232 TPLANLEGHEP-FRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       232 ~~~~~~~~~~~-~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      +.+...+.++. ..+..++=...+  |++|...+.+-..+.    .....+| ......++.+|+.+.+++++.|+.+++
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~q~~T~gqdk~v~l  394 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSKNQLLTCGQDKHVRL  394 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCChhheeeccCcceEEE
Confidence            44444333322 245555433323  666666555433222    2234556 447999999999999999999999999


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       307 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      |+  ..++..+.. -..++.|+.|+|.| .++.|+..|...+.|..+...+..-. .+.++++++|+|+|.+||.|+.|+
T Consensus       395 W~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  395 WN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             cc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCC
Confidence            99  334444332 46788999999999 99999999999999999866554444 488999999999999999999999


Q ss_pred             cEEEEECCCccchheecc-----------cCCCccceeeccccceeeeec
Q psy11350        387 AVKIWDLRKRRLLKWCTQ-----------LLPNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       387 ~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~d~~~~~~~  425 (471)
                      .|+||-+...........           .++....+.+.+.|..+.+|.
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            999999876544332221           122333444445555566663

>KOG0269|consensus

Probab=99.88  E-value=1e-21  Score=188.00  Aligned_cols=233  Identities=23%  Similarity=0.411  Sum_probs=176.9

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceEEEeecC---CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPEC----ELVQTFRGH---DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ....+++.+++-..|+.++ ...+.||-+...    ++...++.-   .-.+..|.|.....+    +|++++..|.|.+
T Consensus        40 ~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N----lIAT~s~nG~i~v  114 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN----LIATCSTNGVISV  114 (839)
T ss_pred             cccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh----hheeecCCCcEEE
Confidence            4556667788888888887 567888876532    222222211   123456888855554    8999999999999


Q ss_pred             EeCCC---CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecC
Q psy11350        226 WSLDK---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWD  301 (471)
Q Consensus       226 wd~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d  301 (471)
                      ||+..   ...+..|..|.                                       ..+.++.|++ ..++|++|+.|
T Consensus       115 Wdlnk~~rnk~l~~f~EH~---------------------------------------Rs~~~ldfh~tep~iliSGSQD  155 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHE---------------------------------------RSANKLDFHSTEPNILISGSQD  155 (839)
T ss_pred             EecCccccchhhhHhhhhc---------------------------------------cceeeeeeccCCccEEEecCCC
Confidence            99976   33444444443                                       3688999988 45689999999


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      |+|++||++..+...++.+....|..+.|+| .+..++++...|.+.+||++.. ++...+.+|.++|.|+.|+|++.+|
T Consensus       156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l  235 (839)
T KOG0269|consen  156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL  235 (839)
T ss_pred             ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence            9999999999988888888889999999999 6789999999999999999875 5677888999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCccc--hheeccc-----------CCCccceeeccccceeeeecccCC
Q psy11350        380 ATGSEDNAVKIWDLRKRRL--LKWCTQL-----------LPNSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~--~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      ||||.|+.|+|||...++.  +.++...           .+...+..+...|..+.+|+...+
T Consensus       236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            9999999999999986543  2233222           123445566667778888886654

>KOG1332|consensus

Probab=99.88  E-value=9.4e-22  Score=163.94  Aligned_cols=197  Identities=23%  Similarity=0.381  Sum_probs=161.2

Q ss_pred             ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc---ceeeecCCCCcceEEEEECC--CCCEEEEEeCCCe
Q psy11350        191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT---PLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHS  265 (471)
Q Consensus       191 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~~  265 (471)
                      ..|...|..+...--+.     .|+||+.|++|+|+.++.+.   .+..+.+|.+ +|+.++|..  -|.+|++++.|+.
T Consensus         8 t~H~D~IHda~lDyygk-----rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGK-----RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-PVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             hhhhhhhhHhhhhhhcc-----eeeeecCCccEEEEEEcCCCCceeeeEecCCCC-CeeEEeecccccCcEeeEeecCce
Confidence            35777777777666666     69999999999999987654   5678889988 999999965  7999999999999


Q ss_pred             EEeccc-------cccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEECCCC---cEEEEeeCCCCCeEEEEEeCC
Q psy11350        266 WRLDTP-------LANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWDLNQG---QEVLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       266 ~~~~~~-------~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~d  333 (471)
                      +.+|..       ......| ...|++++|.|.  |-.|++++.||.|.|.+.+..   ........|.-.|++++|.|-
T Consensus        82 VIiWke~~g~w~k~~e~~~h-~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   82 VIIWKEENGRWTKAYEHAAH-SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             EEEEecCCCchhhhhhhhhh-cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            777543       2334455 568999999995  558999999999999998765   123345679999999999984


Q ss_pred             ---C-----------CEEEEEeCCCeEEEEeCCCCe--eEEEecccCcCEEEEEEcCCC----CEEEEEeCCCcEEEEEC
Q psy11350        334 ---G-----------SVVATGGLDAFGRVWDLRTGR--CIMFLEGHLKSVFSVDFSPDG----YHLATGSEDNAVKIWDL  393 (471)
Q Consensus       334 ---~-----------~~l~t~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~----~~l~s~s~dg~i~iwd~  393 (471)
                         |           +.|++|+.|+.|+||+..++.  .-.+|.+|.+.|..++|.|.-    .+|++||.||+|.||-.
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence               4           569999999999999998763  334688999999999999953    58999999999999987


Q ss_pred             C
Q psy11350        394 R  394 (471)
Q Consensus       394 ~  394 (471)
                      +
T Consensus       241 ~  241 (299)
T KOG1332|consen  241 D  241 (299)
T ss_pred             c
Confidence            6

>KOG0321|consensus

Probab=99.87  E-value=9.6e-21  Score=177.64  Aligned_cols=244  Identities=20%  Similarity=0.295  Sum_probs=184.3

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE--eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT--FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ...|...|..+.|-|....|++++.|.++++||+++.+++..  +.+|.+.|.+++|.|.+..    .|++|+.||.|.|
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~----vF~tGgRDg~ill  171 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA----VFCTGGRDGEILL  171 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCc----ceeeccCCCcEEE
Confidence            347999999999999667899999999999999999888876  8899999999999999886    8999999999999


Q ss_pred             EeCCCCc--------------------cee-------eecCCCCcceEE---EEECCCCCEEEEEeC-CCeEEecccccc
Q psy11350        226 WSLDKDT--------------------PLA-------NLEGHEPFRVSR---IKFHPSGRFLGTCCW-DHSWRLDTPLAN  274 (471)
Q Consensus       226 wd~~~~~--------------------~~~-------~~~~~~~~~v~~---~~~s~~~~~i~~~~~-d~~~~~~~~~~~  274 (471)
                      ||++...                    +..       ....+. ..|.+   +.+..|...|++++. |+.+++|.....
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            9986332                    000       001111 13444   667788888888887 887665433221


Q ss_pred             c-------------cCC--CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc--EEEEeeCCCCC--eEEEEEeCCCC
Q psy11350        275 L-------------EGH--EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKP--VYCMSFQGDGS  335 (471)
Q Consensus       275 ~-------------~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~d~~  335 (471)
                      .             ..+  ....+.++.....|.+|++.+.|+.|+.||+.+..  ++..+.++...  -..-..+||+.
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence            1             111  12247778888888999988889999999998643  33334433211  12334689999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe-eEEEecccCcCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q psy11350        336 VVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       336 ~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. -.-+++|++|..++||++..+
T Consensus       331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999998764 45567899999999999984 234777899999999999654

>KOG0302|consensus

Probab=99.87  E-value=4.4e-21  Score=169.30  Aligned_cols=210  Identities=22%  Similarity=0.354  Sum_probs=163.1

Q ss_pred             cccceeeeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceE---EEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPECELV---QTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      .......++.||...=.+++|||-. ..|++|.--+.|++|...+|.-.   ..|.+|+..|-.|+|+|....    +|+
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfa  274 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFA  274 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEE
Confidence            3445556778999999999999943 24888888899999999887543   346689999999999999876    899


Q ss_pred             EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEE
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +|+.||+|+|||++.+.....+.                                    ...| ...|+.|.|+..-.+|
T Consensus       275 ScS~DgsIrIWDiRs~~~~~~~~------------------------------------~kAh-~sDVNVISWnr~~~lL  317 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGPKKAAVS------------------------------------TKAH-NSDVNVISWNRREPLL  317 (440)
T ss_pred             eeecCceEEEEEecCCCccceeE------------------------------------eecc-CCceeeEEccCCccee
Confidence            99999999999998873221111                                    0122 3369999999988899


Q ss_pred             EEEecCCeEEEEECCC---CcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCe----------------
Q psy11350        296 GTCCWDHSWRLWDLNQ---GQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGR----------------  355 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~----------------  355 (471)
                      |+|+.||+++|||+++   ++++..++-|..+|+++.|+| +...|++++.|..|.|||+....                
T Consensus       318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl  397 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL  397 (440)
T ss_pred             eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC
Confidence            9999999999999986   467889999999999999999 56688899999999999986321                


Q ss_pred             eEEEecccC--cCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q psy11350        356 CIMFLEGHL--KSVFSVDFSPD-GYHLATGSEDNAVKIW  391 (471)
Q Consensus       356 ~~~~~~~h~--~~v~~~~~sp~-~~~l~s~s~dg~i~iw  391 (471)
                      +.+.+.-|.  ..+..+.|+++ ..+|++.+.|| +.||
T Consensus       398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             CceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            111222343  45888999985 45788888887 3444

>KOG2048|consensus

Probab=99.87  E-value=8.5e-20  Score=172.56  Aligned_cols=264  Identities=16%  Similarity=0.177  Sum_probs=207.2

Q ss_pred             CCcchhhhhhHHHHhhccccceeeeeecC-CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEE
Q psy11350        123 IPEATRTARNQELQKHLTSLSIYCSQVGD-TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIE  201 (471)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  201 (471)
                      ++..+..++.|.+...   .-....+.|| .+.|.+++|++ +..|++.+.+|.|.-||+.+++....+....+.|++++
T Consensus        42 vsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsia  117 (691)
T KOG2048|consen   42 VSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIA  117 (691)
T ss_pred             eeccCCcEEEEccCCC---ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEE
Confidence            3444555555554432   2222333344 57899999994 56788888899999999999999999998899999999


Q ss_pred             EeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec-CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccc-----
Q psy11350        202 FHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE-GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANL-----  275 (471)
Q Consensus       202 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~-----  275 (471)
                      .+|.+.     .++.|+.||.+...+...+....... ......+.++.|+|++..++.|+.||.+++|.....-     
T Consensus       118 i~p~~~-----~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~  192 (691)
T KOG2048|consen  118 INPENT-----ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII  192 (691)
T ss_pred             eCCccc-----eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence            999998     69999999988888877776554432 2223589999999999999999999987775432211     


Q ss_pred             -------cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Q psy11350        276 -------EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV  348 (471)
Q Consensus       276 -------~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~i  348 (471)
                             ....+.-|+++.|-.+ ..|++|...|+|.+||...+..+..+..|...|.+++..+++..+++++.|+.|..
T Consensus       193 ~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  193 TMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             eecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence                   1112345788888754 57999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCee----EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        349 WDLRTGRC----IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       349 wd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      |...+.+.    ......|...|.+++..++  .+++|+.|.++.+--.+..+.
T Consensus       272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~  323 (691)
T KOG2048|consen  272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN  323 (691)
T ss_pred             EEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc
Confidence            98776533    2234468889999999876  899999999999988776443

>KOG0646|consensus

Probab=99.87  E-value=4.9e-21  Score=173.52  Aligned_cols=205  Identities=18%  Similarity=0.310  Sum_probs=161.2

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC---------CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP---------ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      .+.+|-.+|+|+.|+-||.+|+||+.||.|.+|.+.         +.++.+.|..|.-+|+.+...+.+.+   ..++|+
T Consensus       118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~---~rl~Ta  194 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTN---ARLYTA  194 (476)
T ss_pred             HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCcc---ceEEEe
Confidence            345899999999999999999999999999999873         35678889999999999999877532   279999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      +.|.++++||+..+..+.++....                                        .+.+++.+|-+..+++
T Consensus       195 S~D~t~k~wdlS~g~LLlti~fp~----------------------------------------si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTITFPS----------------------------------------SIKAVALDPAERVVYI  234 (476)
T ss_pred             cCCceEEEEEeccceeeEEEecCC----------------------------------------cceeEEEcccccEEEe
Confidence            999999999999997776665433                                        4666666666666777


Q ss_pred             EecCCeEEEEECCC----------------CcEEEEeeCCCC--CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Q psy11350        298 CCWDHSWRLWDLNQ----------------GQEVLHQEGHGK--PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       298 ~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~  359 (471)
                      |+.+|.|.+.++..                +..+..+.+|.+  +|+|++++-||.+|++|+.||.|.|||+.+.+++++
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            77777666666542                234556778887  999999999999999999999999999999999998


Q ss_pred             ecccCcCEEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q psy11350        360 LEGHLKSVFSVDFSPDGYHLAT-GSEDNAVKIWDLR  394 (471)
Q Consensus       360 ~~~h~~~v~~~~~sp~~~~l~s-~s~dg~i~iwd~~  394 (471)
                      +....++|+.+.+.|-.+-.+. -.....+-.|++.
T Consensus       315 l~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  315 LQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             HhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            8867789999999774333332 2233344455543

>KOG4378|consensus

Probab=99.87  E-value=2.1e-21  Score=176.87  Aligned_cols=241  Identities=17%  Similarity=0.273  Sum_probs=185.0

Q ss_pred             hhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCC
Q psy11350        130 ARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG  209 (471)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  209 (471)
                      .+.+.-.+.....+....+.|.  .-.|++......|+++|+..+.|+|||+....+.+.+++|...|+++.++....  
T Consensus        59 ~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De--  134 (673)
T KOG4378|consen   59 MRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE--  134 (673)
T ss_pred             EEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc--
Confidence            3444444444445555445454  223333334448999999999999999997777888999999999999998877  


Q ss_pred             CccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEEC
Q psy11350        210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       210 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~  289 (471)
                         +|++++..|.|.|..+.++.....|....                                      ...|.-+.|+
T Consensus       135 ---yiAsvs~gGdiiih~~~t~~~tt~f~~~s--------------------------------------gqsvRll~ys  173 (673)
T KOG4378|consen  135 ---YIASVSDGGDIIIHGTKTKQKTTTFTIDS--------------------------------------GQSVRLLRYS  173 (673)
T ss_pred             ---eeEEeccCCcEEEEecccCccccceecCC--------------------------------------CCeEEEeecc
Confidence               79999999999999998887665555433                                      2246788899


Q ss_pred             CCCC-EEEEEecCCeEEEEECCCCcEEEEe-eCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC
Q psy11350        290 PSGR-FLGTCCWDHSWRLWDLNQGQEVLHQ-EGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS  366 (471)
Q Consensus       290 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~  366 (471)
                      |..+ +|.+++.+|.|.+||+....+++.+ ..|..|...|+|+| +..+|++.+.|..|.+||.++.+....+. ...+
T Consensus       174 ~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~P  252 (673)
T KOG4378|consen  174 PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHP  252 (673)
T ss_pred             cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCC
Confidence            9776 4667899999999999888777654 67999999999999 66789999999999999999876666554 4568


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-chheecccCCCccceeeccc
Q psy11350        367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRR-LLKWCTQLLPNSIGVTSLLT  417 (471)
Q Consensus       367 v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  417 (471)
                      ...++|+++|.+|+.|+..|.|..||++..+ ++.++..+ ...+..+++..
T Consensus       253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~  303 (673)
T KOG4378|consen  253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQP  303 (673)
T ss_pred             cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeee
Confidence            9999999999999999999999999999765 44444433 33344444433

>KOG0642|consensus

Probab=99.86  E-value=7.3e-21  Score=176.30  Aligned_cols=256  Identities=22%  Similarity=0.240  Sum_probs=200.2

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC--------CCceEEEeecCCCCEEEEEEeeCCCCCCccE
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP--------ECELVQTFRGHDCNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  213 (471)
                      ..+..++.-|...|.+++|.|....|++++.||.|.+|++.        .-+++.+|++|.++|.|++..+++.     .
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-----~  358 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-----H  358 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-----E
Confidence            34444788899999999999999999999999999999993        2357889999999999999999998     6


Q ss_pred             EEEEeCCCcEEEEeCCCC----------cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc----CCC
Q psy11350        214 LASCAQDGSVKLWSLDKD----------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE----GHE  279 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~----~~~  279 (471)
                      +++|+.||+|+.|++...          .....+.+|.+ .++.+++|+....|++++.||+++.|.+.....    ...
T Consensus       359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~  437 (577)
T KOG0642|consen  359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK  437 (577)
T ss_pred             EEeeccCceeeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc
Confidence            999999999999976422          23445677777 899999999999999999999988876544322    111


Q ss_pred             -CcceEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeCC-------CCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        280 -PFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGH-------GKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       280 -~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                       .+....+.+-... .+.++...-+.-.++++.....+..+...       ...+..+.++|...+.+++..|+.|+++|
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD  517 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence             1123455554332 22333333344445555555544444321       23467788899999999999999999999


Q ss_pred             CCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ..+++++.....|...++++++.|+|.+|++++.||.+++|.+....++..+.
T Consensus       518 n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  518 NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence            99999999999999999999999999999999999999999998887776544

>KOG1538|consensus

Probab=99.86  E-value=1.6e-19  Score=170.24  Aligned_cols=233  Identities=17%  Similarity=0.328  Sum_probs=187.9

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .|..++|-|||..|+.+. +..+.+||+.+|..+.++++|...|.|++|+.+|.     .+++|+.|..|.+|+..-...
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-----rFASG~aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-----RFASGSADKSVIIWTSKLEGI   87 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCc-----eeccCCCceeEEEecccccce
Confidence            899999999999988876 67899999999999999999999999999999999     799999999999998542111


Q ss_pred             --------eee--ec--------------------------CCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc---
Q psy11350        234 --------LAN--LE--------------------------GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN---  274 (471)
Q Consensus       234 --------~~~--~~--------------------------~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~---  274 (471)
                              +..  |.                          ......+.+++|..||.+++.|-.+|++.+......   
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence                    000  00                          011126788899999999999999999887433221   


Q ss_pred             ---ccCCCCcceEEEEECCCC-----CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy11350        275 ---LEGHEPFRVSRIKFHPSG-----RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG  346 (471)
Q Consensus       275 ---~~~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i  346 (471)
                         -.+....+|++++|+|..     ..+++.....++..|.+. |+.+..-..-.-...|+.+.++|.+++.|+.|+.+
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L  246 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL  246 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence               123335689999999953     378888888889888875 45554433344456789999999999999999999


Q ss_pred             EEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        347 RVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       347 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      .+|- +.|-.+.++......|+.++..|++++++.|+.||+|..|++-
T Consensus       247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  247 SLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            9996 6788888887777899999999999999999999999999874

>KOG0307|consensus

Probab=99.86  E-value=4.7e-21  Score=191.25  Aligned_cols=242  Identities=21%  Similarity=0.339  Sum_probs=192.0

Q ss_pred             CcCeEEEEEecCCCE----EEEEeCCCcEEEEeCCCC------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        152 TRPISYCSFSPDSQH----VATASWSGLCKLWTVPEC------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~----l~tg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ....+.++|.+.|..    ||.|..||.|.+||...-      ..+.++..|.+.|..+.|++...+    +|++|+.||
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n----lLASGa~~g  139 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN----LLASGADDG  139 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc----eeeccCCCC
Confidence            456788999998876    888999999999998641      345567789999999999999886    899999999


Q ss_pred             cEEEEeCCCCcceeee-cCCCCcceEEEEECCCCC-EEEEEeCCCe---EEeccc--cccccCCCC-cceEEEEECCCCC
Q psy11350        222 SVKLWSLDKDTPLANL-EGHEPFRVSRIKFHPSGR-FLGTCCWDHS---WRLDTP--LANLEGHEP-FRVSRIKFHPSGR  293 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~-~i~~~~~d~~---~~~~~~--~~~~~~~~~-~~v~~l~~~~~~~  293 (471)
                      .|.|||+..-+.-... .......|.+++|+..-. .|++++.+|.   |++...  +..+..+.. ..+..++|||++.
T Consensus       140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            9999999875443333 222344899999998765 5566677766   444332  333333322 3478999999764


Q ss_pred             -EEEEEecCC---eEEEEECCCC-cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCE
Q psy11350        294 -FLGTCCWDH---SWRLWDLNQG-QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV  367 (471)
Q Consensus       294 -~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v  367 (471)
                       .+++++.|.   .|.+||++.- .+++.+++|...|.++.|++ |..+|++++.|+.|.+|+..+++.+..+......+
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~  299 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWC  299 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcce
Confidence             566666554   5999999864 46777889999999999999 55899999999999999999999999999888899


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEECCCcc
Q psy11350        368 FSVDFSPDG-YHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       368 ~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      ..+.|+|.. ..|++++-||.|.|+.+....
T Consensus       300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999954 588899999999999987654

>KOG4328|consensus

Probab=99.85  E-value=6.6e-20  Score=165.78  Aligned_cols=222  Identities=23%  Similarity=0.307  Sum_probs=171.9

Q ss_pred             EeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc----ceeeecCCCCcceEEEEECCCC
Q psy11350        179 WTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT----PLANLEGHEPFRVSRIKFHPSG  254 (471)
Q Consensus       179 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~  254 (471)
                      +|+.+......++.+..+|++++|+|..+.   .++++|..-|+|-+||+.+.+    .+..+..|.. +|.++.|+|.+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~---~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-~Vs~l~F~P~n  246 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENR---KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-PVSGLKFSPAN  246 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcc---eEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-cccceEecCCC
Confidence            444455556667778999999999998761   278999999999999996332    3445556665 89999999975


Q ss_pred             -CEEEEEeCCCeEEecccccc----c-cC-CCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeCCCCCeE
Q psy11350        255 -RFLGTCCWDHSWRLDTPLAN----L-EG-HEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE-VLHQEGHGKPVY  326 (471)
Q Consensus       255 -~~i~~~~~d~~~~~~~~~~~----~-~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~  326 (471)
                       ..|++.+.||++++......    + .. .....+..+.|+.+...++.+..=|...+||++++.. ...+.-|...|+
T Consensus       247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence             58999999999877432111    1 11 1234578889999888888888888999999998765 666777889999


Q ss_pred             EEEEeC-CCCEEEEEeCCCeEEEEeCCCCe----eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC----Ccc
Q psy11350        327 CMSFQG-DGSVVATGGLDAFGRVWDLRTGR----CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR----KRR  397 (471)
Q Consensus       327 ~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~----~~~  397 (471)
                      +++++| ...+|+|++.|++.+|||++.-.    ++.....|...|.+..|||.+..|+|.+.|..|+|||..    .-.
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~  406 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE  406 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence            999999 56789999999999999998532    233444699999999999988779999999999999983    444


Q ss_pred             chheecc
Q psy11350        398 LLKWCTQ  404 (471)
Q Consensus       398 ~~~~~~~  404 (471)
                      ++.++.+
T Consensus       407 p~~~I~H  413 (498)
T KOG4328|consen  407 PLGTIPH  413 (498)
T ss_pred             ccceeec
Confidence            4444443

>KOG0303|consensus

Probab=99.85  E-value=6.4e-20  Score=162.94  Aligned_cols=207  Identities=24%  Similarity=0.403  Sum_probs=166.7

Q ss_pred             eeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC-------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        147 SQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      ...||+++|..++|+|-+ ..||+||.|.+|.||.++.+       +++..+.+|...|.-+.|+|...+    .|++++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N----VLlsag  151 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN----VLLSAG  151 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh----hHhhcc
Confidence            345999999999999965 56889999999999999753       456778899999999999999876    899999


Q ss_pred             CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        219 QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      .|.+|.+||+.+++.+..+. |                                       +..|+++.|+.+|.+|++.
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-h---------------------------------------pd~i~S~sfn~dGs~l~Tt  191 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-H---------------------------------------PDMVYSMSFNRDGSLLCTT  191 (472)
T ss_pred             CCceEEEEeccCCceeeecC-C---------------------------------------CCeEEEEEeccCCceeeee
Confidence            99999999999998776655 3                                       3369999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCC-CeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCe---eEEEecccCcCEEEEE
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGK-PVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGR---CIMFLEGHLKSVFSVD  371 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~  371 (471)
                      +.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.||.   .+..+-+||...-.   ....+.. ...|.---
T Consensus       192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PF  270 (472)
T KOG0303|consen  192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPF  270 (472)
T ss_pred             cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEee
Confidence            9999999999999999888777764 345667888888555553   46779999876542   2344443 34566566


Q ss_pred             EcCCCCEEEE-EeCCCcEEEEECCCccc
Q psy11350        372 FSPDGYHLAT-GSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       372 ~sp~~~~l~s-~s~dg~i~iwd~~~~~~  398 (471)
                      |.||..+++. |-.|+.|+.|.+..-.+
T Consensus       271 yD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  271 YDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            8888887765 45799999999987654

>KOG2096|consensus

Probab=99.85  E-value=1.9e-19  Score=155.76  Aligned_cols=229  Identities=20%  Similarity=0.289  Sum_probs=169.5

Q ss_pred             CeEEEEEecCCCEEEEEe-CCCcEEEEeCCC---CceEEE---------eecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        154 PISYCSFSPDSQHVATAS-WSGLCKLWTVPE---CELVQT---------FRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~---~~~~~~---------~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      --+.+.|+||.+-++... ...++++|.+..   |.....         -+.|...|..+-....+.     +|++++.|
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-----~imsas~d  208 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-----YIMSASLD  208 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-----EEEEecCC
Confidence            456779999987666544 456899997642   222111         123555666666555555     89999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-------------ccccccCCCCcceEEEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-------------PLANLEGHEPFRVSRIK  287 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-------------~~~~~~~~~~~~v~~l~  287 (471)
                      ..|.+|++. |+.+..+..... .-+..++||+|+++++++.--.+.+|.             ....+.+| ...|..++
T Consensus       209 t~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~a  285 (420)
T KOG2096|consen  209 TKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAA  285 (420)
T ss_pred             CcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeee
Confidence            999999997 888887766554 677889999999999998766544432             34557788 56899999


Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCC-------cEEEEe----eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQG-------QEVLHQ----EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~----~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                      |+++...+++.+.||+++|||+.-.       +.+...    ..-.+.-..+..+|.|+.|+.+ ....++++..++|+.
T Consensus       286 Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~  364 (420)
T KOG2096|consen  286 FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKD  364 (420)
T ss_pred             eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCcc
Confidence            9999999999999999999997521       111111    1122333489999999988776 456799999999876


Q ss_pred             EEEec-ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        357 IMFLE-GHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       357 ~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      .-.+. .|...|.+++|+++|++++|++ |..++++.
T Consensus       365 ~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  365 YPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             chhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            65554 6899999999999999999986 66788775

>KOG0322|consensus

Probab=99.85  E-value=5.2e-20  Score=155.28  Aligned_cols=237  Identities=20%  Similarity=0.274  Sum_probs=169.4

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ..+..+++|.+.|+++.|-.+++ |++|...|.|++|++.+......++ .|...|+.+.-.|.+.      +.+-+.|+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------l~tqgRd~   77 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------LDTQGRDP   77 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------hhhcCCCc
Confidence            34567789999999999987765 9999999999999999988888888 5778899999989864      89999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEE-----CCCCCE---EEEEeCCCe-------------EEeccccccccCCCC
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKF-----HPSGRF---LGTCCWDHS-------------WRLDTPLANLEGHEP  280 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~---i~~~~~d~~-------------~~~~~~~~~~~~~~~  280 (471)
                      .+.+|++.-+..+..-.    ..++++.|     +++++.   ++..-..+.             +.+....  -... .
T Consensus        78 ~L~lw~ia~s~~i~i~S----i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~--~~~K-l  150 (323)
T KOG0322|consen   78 LLILWTIAYSAFISIHS----IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS--ERSK-L  150 (323)
T ss_pred             eEEEEEccCcceEEEee----eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch--hccc-c
Confidence            99999997654332211    12222222     222221   111111111             1111100  0111 2


Q ss_pred             cceEEEEECC-CCC--EEEEEecCCeEEEEECCCCcEEEEe----------eCCCCC-----------------------
Q psy11350        281 FRVSRIKFHP-SGR--FLGTCCWDHSWRLWDLNQGQEVLHQ----------EGHGKP-----------------------  324 (471)
Q Consensus       281 ~~v~~l~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~-----------------------  324 (471)
                      +.+.+..+.. .+.  ++++|..+|.+.+||+.++..+..+          ..|..+                       
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            3466666443 233  5677888999999999886322211          122222                       


Q ss_pred             -----------------------eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        325 -----------------------VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       325 -----------------------v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                                             |..+.+-||++.++|++.|++||||..++..++..+.-|.+.|.+++|+|+...+|+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAa  310 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAA  310 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhh
Confidence                                   345566789999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEC
Q psy11350        382 GSEDNAVKIWDL  393 (471)
Q Consensus       382 ~s~dg~i~iwd~  393 (471)
                      +|.|+.|.+|++
T Consensus       311 askD~rISLWkL  322 (323)
T KOG0322|consen  311 ASKDARISLWKL  322 (323)
T ss_pred             ccCCceEEeeec
Confidence            999999999986

>KOG1274|consensus

Probab=99.84  E-value=6.7e-19  Score=171.96  Aligned_cols=229  Identities=17%  Similarity=0.216  Sum_probs=185.8

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      |...|.+++-  ++.+|++|+.+++|.+|...+++.-..+....-++.+++|+.+|.     +++.|+.|-.|++-++..
T Consensus        55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~-----~iaagsdD~~vK~~~~~D  127 (933)
T KOG1274|consen   55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGK-----MIAAGSDDTAVKLLNLDD  127 (933)
T ss_pred             cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCc-----EEEeecCceeEEEEeccc
Confidence            6677777765  456999999999999999998877666666678999999999998     799999999999999999


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-----ccc-------CCCCcceEEEEECCCCCEEEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-----NLE-------GHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-----~~~-------~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ......+.+|.. +|.++.|+|++.++++.+-||.+.+|....     .+.       ......+..++|+|+|..|+..
T Consensus       128 ~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  128 SSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             cchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence            999999999998 999999999999999999999977653211     111       1113357789999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      ..|+.|++|+...+.....+..  +...+.++.|+|+|+|||+++.+|.|.|||+++...    ......|.+++|.|+.
T Consensus       207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCC
Confidence            9999999999999887776643  445599999999999999999999999999988222    2234679999999987


Q ss_pred             CEEEEEeCCCcEEEE
Q psy11350        377 YHLATGSEDNAVKIW  391 (471)
Q Consensus       377 ~~l~s~s~dg~i~iw  391 (471)
                      .-+-.-...|...+|
T Consensus       283 n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  283 NAITLITALGTLGVS  297 (933)
T ss_pred             CeeEEEeeccccccC
Confidence            765444444444333

>KOG1273|consensus

Probab=99.84  E-value=2.9e-19  Score=154.42  Aligned_cols=246  Identities=19%  Similarity=0.243  Sum_probs=182.8

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      +...+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++.++- .++|+.+.|+|...+    ..+.+-.+..-
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n----~~va~~~~~sp  131 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRN----KCVATIMEESP  131 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCC----eEEEEEecCCc
Confidence            4445669999999999999999999999999999999999999988874 689999999998875    44444445555


Q ss_pred             EEEeCCCCcceeee-cCC----CCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCC
Q psy11350        224 KLWSLDKDTPLANL-EGH----EPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       224 ~iwd~~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      .+-++..+  .+.. ...    ......+..|.+.|++|++|...|.+.+..     .+..+.......|..+.++..|+
T Consensus       132 ~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~  209 (405)
T KOG1273|consen  132 VVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR  209 (405)
T ss_pred             EEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc
Confidence            55555432  2221 111    112334456899999999999999866632     22223322234688899999999


Q ss_pred             EEEEEecCCeEEEEECCCC----c--EE---EEeeC--CCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEEEec
Q psy11350        294 FLGTCCWDHSWRLWDLNQG----Q--EV---LHQEG--HGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~----~--~~---~~~~~--~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~~~~  361 (471)
                      +|++-+.|..|+.|+++.-    +  .+   +.++.  ...+=.+++|+.+|.++++|+. -..++||....|..++.+.
T Consensus       210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh  289 (405)
T KOG1273|consen  210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH  289 (405)
T ss_pred             EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence            9999999999999998631    1  11   11110  1223457899999999988874 4569999999999999999


Q ss_pred             ccC-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        362 GHL-KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       362 ~h~-~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      |.. .....+.|+|-...+++- ..|.++||......
T Consensus       290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             CCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence            887 568889999988888887 78999999876543

>KOG0290|consensus

Probab=99.84  E-value=1.9e-19  Score=153.95  Aligned_cols=203  Identities=20%  Similarity=0.369  Sum_probs=157.4

Q ss_pred             ecCCcCeEEEEEecCCC-----EEEEEeCCCcEEEEeCCC--CceE--EEe-----ecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        149 VGDTRPISYCSFSPDSQ-----HVATASWSGLCKLWTVPE--CELV--QTF-----RGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~-----~l~tg~~dg~i~iwd~~~--~~~~--~~~-----~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      ..|..|++.+.|.|+..     +|||.+  ..+++|.+..  .+..  ..+     ..+..++++..|+....+    ++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~----~i  166 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN----LI  166 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc----ee
Confidence            47999999999999863     466554  6899999863  2211  111     235678999999988776    89


Q ss_pred             EEEeCCCcEEEEeCCCCcc---eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCC
Q psy11350        215 ASCAQDGSVKLWSLDKDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~  291 (471)
                      .+++-|-+..|||++++..   ...+..|.                                       ..|..++|...
T Consensus       167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHD---------------------------------------KEV~DIaf~~~  207 (364)
T KOG0290|consen  167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHD---------------------------------------KEVYDIAFLKG  207 (364)
T ss_pred             EeecccCeEEEEEEeeccccceeeEEEecC---------------------------------------cceeEEEeccC
Confidence            9999999999999988732   22233333                                       36888888875


Q ss_pred             C-CEEEEEecCCeEEEEECCCCcEEEEee---CCCCCeEEEEEeC-CCCEEEEEeCCC-eEEEEeCCCC-eeEEEecccC
Q psy11350        292 G-RFLGTCCWDHSWRLWDLNQGQEVLHQE---GHGKPVYCMSFQG-DGSVVATGGLDA-FGRVWDLRTG-RCIMFLEGHL  364 (471)
Q Consensus       292 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~-d~~~l~t~~~dg-~i~iwd~~~~-~~~~~~~~h~  364 (471)
                      + +.||+.+.||.+++||++..+.-..+.   ....+...++|++ |.+++++-..|. .|.|.|++.. .++..+.+|.
T Consensus       208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~  287 (364)
T KOG0290|consen  208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ  287 (364)
T ss_pred             ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence            4 479999999999999999865433332   2356888999988 667888877664 5999999875 6888999999


Q ss_pred             cCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q psy11350        365 KSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       365 ~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +.|++++|.|. +..|+||++|..+.+||+.+-
T Consensus       288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             ccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            99999999994 678999999999999999753

>KOG1034|consensus

Probab=99.83  E-value=1.4e-19  Score=157.25  Aligned_cols=238  Identities=23%  Similarity=0.373  Sum_probs=182.2

Q ss_pred             cCCcCeEEEEEecC----CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        150 GDTRPISYCSFSPD----SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       150 gh~~~V~~~~~s~~----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .|......++|+-+    ..+||.|+.-|.|+|.|+.++++...+.+|...|+.|.++|...+    ++++++.|.+|++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~q----lvls~SkD~svRl  162 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQ----LVLSASKDHSVRL  162 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCc----EEEEecCCceEEE
Confidence            47778888899865    347999999999999999999999999999999999999999876    8999999999999


Q ss_pred             EeCCCCcceeeec---CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-----------------------cccCC-
Q psy11350        226 WSLDKDTPLANLE---GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-----------------------NLEGH-  278 (471)
Q Consensus       226 wd~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-----------------------~~~~~-  278 (471)
                      |++++..++..|-   +|.+ .|.++.|+++|.+|++++.|.++.+|....                       +...| 
T Consensus       163 wnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             EeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            9999999998875   4555 899999999999999999999955542210                       00000 


Q ss_pred             --------CCcceEEEEECCCCCEEEEEecCCeEEEEECCC-CcE-------------EEEeeCCCCCeEEE--EEeCCC
Q psy11350        279 --------EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ-GQE-------------VLHQEGHGKPVYCM--SFQGDG  334 (471)
Q Consensus       279 --------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-------------~~~~~~~~~~v~~~--~~s~d~  334 (471)
                              +...|-|+.|-  |+++++-+.++.|..|-... .+.             +..+.-....+.-+  +|.|-+
T Consensus       242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~  319 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ  319 (385)
T ss_pred             ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence                    01123333333  57888989899999998721 111             12222233444444  456668


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeE--EEec--ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        335 SVVATGGLDAFGRVWDLRTGRCI--MFLE--GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       335 ~~l~t~~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +.|+.|...|.|++||++...+.  .++.  .....|...+|+.||.+|+..++|++|.-||..
T Consensus       320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            89999999999999999987652  1222  123568999999999999999999999999854

>KOG4283|consensus

Probab=99.82  E-value=2.1e-18  Score=147.86  Aligned_cols=239  Identities=22%  Similarity=0.351  Sum_probs=191.0

Q ss_pred             ecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        149 VGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .+|+..|.++.|-|- .-++.+++.|.+++|||+.+.+....|+. .+.|..-+|+|-..  ..|++++|..|-.|++.|
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~--sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhh--cceEEEEecCCCcEEEEe
Confidence            479999999999985 45777889999999999999888888764 57888989998764  235788999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCE-EEEEeCCCeEEecccc------cccc-------------CCCCcceEEEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLDTPL------ANLE-------------GHEPFRVSRIK  287 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-i~~~~~d~~~~~~~~~------~~~~-------------~~~~~~v~~l~  287 (471)
                      +.+|...+++.+|.+ .|.++.|+|...+ +++|+.||.+++|...      ..+.             ..+.+.+.+++
T Consensus       175 i~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  175 IASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             ccCCcceeeeccccC-ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            999999999999998 9999999999886 5688999986664221      1111             11245799999


Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC---CCC----CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG---HGK----PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~----~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      |..++.++++++.|..+++|+..+|+....-.+   |..    .+. +. +.+...++---.++.+.++++-++..+..+
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l  331 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL  331 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee
Confidence            999999999999999999999998864322111   111    111 22 334444444456789999999999999999


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        361 EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       361 ~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      ..|-..|.|.++-|+=+...+|..|+.|..|-.
T Consensus       332 ~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  332 STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ecccceeeEEeecCchhhhhccccCCccccccc
Confidence            999999999999999889999999999999986

>KOG1007|consensus

Probab=99.82  E-value=1.4e-18  Score=148.51  Aligned_cols=242  Identities=24%  Similarity=0.360  Sum_probs=175.8

Q ss_pred             eecCCcCeEEEEEecCCCEE-EEEeCC-------CcEEEEeCCCC---------ceEEEee-cCCCCEEEEEEeeCCCCC
Q psy11350        148 QVGDTRPISYCSFSPDSQHV-ATASWS-------GLCKLWTVPEC---------ELVQTFR-GHDCNVGAIEFHPLPSEG  209 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l-~tg~~d-------g~i~iwd~~~~---------~~~~~~~-~h~~~v~~l~~~~~~~~~  209 (471)
                      +..|.+.|..++-+|..+.| +|+..+       -.+-||.++..         +++..+. .+-+.|.|+.|.|++.  
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--  136 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--  136 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--
Confidence            34688999999999976554 444321       24789998642         2333343 3456899999999887  


Q ss_pred             CccEEEEEeCCCcEEEEeCCCCcc-eeeecCCC----CcceEEEEECC--CCCEEEEEeCCCe--EEecccc--ccccCC
Q psy11350        210 AVCSLASCAQDGSVKLWSLDKDTP-LANLEGHE----PFRVSRIKFHP--SGRFLGTCCWDHS--WRLDTPL--ANLEGH  278 (471)
Q Consensus       210 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~----~~~v~~~~~s~--~~~~i~~~~~d~~--~~~~~~~--~~~~~~  278 (471)
                         .+++-. |..|.+|++..+.. +..+....    ....++-+|+|  +|+.+++.+....  |++.+..  ..+...
T Consensus       137 ---klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  137 ---KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             ---eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhh
Confidence               466555 89999999987765 33333221    22577889998  6777776655544  4443222  223333


Q ss_pred             CCcceEEEEECCCCC-EEEEEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC--
Q psy11350        279 EPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT--  353 (471)
Q Consensus       279 ~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~--  353 (471)
                      +...|..+.|+|+.+ +|++++.||.|++||.+.- .++..+.+|...|.++.|+| ..++|++|+.|..|.+|...+  
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            355799999999876 6888999999999999865 46888999999999999999 567899999999999995432  


Q ss_pred             ---------------------------CeeEEEecccCcCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q psy11350        354 ---------------------------GRCIMFLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       354 ---------------------------~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~~  395 (471)
                                                 ...+.++..|...|++++||. |.-+||+-+.||.+.|=.+..
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                                       012446778999999999997 566788999999998876654

>KOG1587|consensus

Probab=99.82  E-value=2.2e-18  Score=167.71  Aligned_cols=241  Identities=18%  Similarity=0.205  Sum_probs=183.6

Q ss_pred             CCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCce--EEE----eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        151 DTRPISYCSFSPDS-QHVATASWSGLCKLWTVPECEL--VQT----FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       151 h~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~~~--~~~----~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      -..+|+|++|+|.. .+||.|+.+|.|.+||+..+..  ...    ...|..+++.+.|..+..+   .-+++++.||.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~---~~f~s~ssDG~i  317 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN---TEFFSLSSDGSI  317 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC---CceEEEecCCcE
Confidence            46789999999964 5677888999999999987654  222    2368999999999876543   138999999999


Q ss_pred             EEEeCCCCcc------eeeec-----CCCCcceEEEEECCCC-CEEEEEeCCCeEEec-------------cccccccCC
Q psy11350        224 KLWSLDKDTP------LANLE-----GHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLD-------------TPLANLEGH  278 (471)
Q Consensus       224 ~iwd~~~~~~------~~~~~-----~~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~-------------~~~~~~~~~  278 (471)
                      ..|+++.-..      .....     ......++++.|.+.. ..+++|+..|.+...             .+...+..|
T Consensus       318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h  397 (555)
T KOG1587|consen  318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH  397 (555)
T ss_pred             eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence            9998753321      11111     1233478999998865 467888888875441             112233344


Q ss_pred             CCcceEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC--
Q psy11350        279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN-QGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG--  354 (471)
Q Consensus       279 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~--  354 (471)
                       .++|.++.++|-+..++..+.|.+++||... ...++..+..+...|++++||| ....++++..||.|.+||+...  
T Consensus       398 -~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  398 -IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             -CcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence             6689999999977655555559999999988 6677888888888899999999 4568889999999999998654  


Q ss_pred             eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        355 RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       355 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .++.+...+....+.+.|+++|+.|++|...|++.+|++..
T Consensus       477 ~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  477 EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            56666665667788889999999999999999999999964

>KOG0321|consensus

Probab=99.82  E-value=1.4e-18  Score=163.30  Aligned_cols=266  Identities=19%  Similarity=0.244  Sum_probs=191.0

Q ss_pred             EEEecC---CCEEEEEeCCCcEEEEeCCCCce------EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        158 CSFSPD---SQHVATASWSGLCKLWTVPECEL------VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       158 ~~~s~~---~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      +.|++.   ...||.+.++|.|.++|......      +.....|...|..+.|.|...     .|++++.|.++++||+
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~-----~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGES-----LLVSASGDSTIRPWDV  129 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCce-----eEEEccCCceeeeeee
Confidence            566653   35689999999999999865332      244558999999999999444     7999999999999999


Q ss_pred             CCCcceee--ecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccccccc------------cCCC--------------
Q psy11350        229 DKDTPLAN--LEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPLANL------------EGHE--------------  279 (471)
Q Consensus       229 ~~~~~~~~--~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~~~~------------~~~~--------------  279 (471)
                      .+.++...  +.+|.. .+.+++|.|... .|++|+.||.+.+|......            ..|.              
T Consensus       130 k~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             ccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            99988776  778877 899999999876 67889999986554221110            0000              


Q ss_pred             -----CcceEE---EEECCCCCEEEEEec-CCeEEEEECCCCcEEEEe--------eCC---CCCeEEEEEeCCCCEEEE
Q psy11350        280 -----PFRVSR---IKFHPSGRFLGTCCW-DHSWRLWDLNQGQEVLHQ--------EGH---GKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       280 -----~~~v~~---l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~v~~~~~s~d~~~l~t  339 (471)
                           ...|.+   +.+..|...||+++. |+.|++||+++.......        ..|   ...+.++.....|.+|++
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence                 112333   555668888998887 999999999976543332        223   345677888888899999


Q ss_pred             EeCCCeEEEEeCCCC--eeEEEecccCcCE--EEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee----------ccc
Q psy11350        340 GGLDAFGRVWDLRTG--RCIMFLEGHLKSV--FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC----------TQL  405 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~--~~~~~~~~h~~~v--~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~  405 (471)
                      .+.|++|++|++.+-  .++..+.++...-  ..-..+|++.++++|+.|...++|.+.+...-..+          ...
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w  368 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW  368 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence            999999999999864  3444454443221  12247899999999999999999999876532211          111


Q ss_pred             CC-CccceeeccccceeeeecccCC
Q psy11350        406 LP-NSIGVTSLLTDLYIDVLESLNP  429 (471)
Q Consensus       406 ~~-~~~~~~~~~~d~~~~~~~~~~~  429 (471)
                      .+ ....+++++.|....+|.+.+.
T Consensus       369 ~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  369 LPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ccccCCCceeeccCcceEEEeccCc
Confidence            22 3356677788999999998654

>KOG0644|consensus

Probab=99.81  E-value=8.1e-20  Score=176.18  Aligned_cols=244  Identities=20%  Similarity=0.347  Sum_probs=195.9

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      +.||...|.|+.|...|.++++|+.|..++||...++.+....+||.+.|+.++.+..+.     .+++++.|..|++|.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~-----~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT-----MIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh-----hhhhcccCceEEEEe
Confidence            459999999999999999999999999999999999999999999999999999998877     699999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc----c----cccCCCCcc-----------------
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL----A----NLEGHEPFR-----------------  282 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~----~----~~~~~~~~~-----------------  282 (471)
                      +..+.++..+.+|.+ .|++++|+|-.    +.+.||+..+|...    .    .+.......                 
T Consensus       261 l~~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             cCCCchHHHHhcccc-ceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999998 99999999976    66777775553221    0    000000111                 


Q ss_pred             ---------eEEEEECCCC-----------CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEe
Q psy11350        283 ---------VSRIKFHPSG-----------RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGG  341 (471)
Q Consensus       283 ---------v~~l~~~~~~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~  341 (471)
                               +..++|....           .+.+++-.+..+++|++.++...+.+.+|...++.+.++| +.....+++
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG  415 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence                     1122222222           2333344456688899999999999999999999999999 666777899


Q ss_pred             CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhe
Q psy11350        342 LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       342 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      .||...|||+-.|.+++.+.-..+.+...+||++|..++....-|.++|...-.++..+.
T Consensus       416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~  475 (1113)
T KOG0644|consen  416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK  475 (1113)
T ss_pred             CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence            999999999999988776553346677789999999999888889999998887776653

>KOG2445|consensus

Probab=99.81  E-value=1e-17  Score=144.56  Aligned_cols=249  Identities=18%  Similarity=0.311  Sum_probs=174.5

Q ss_pred             ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc----ceeeecCCCCcceEEEEECC--CCCEEEEEeCCC
Q psy11350        191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT----PLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDH  264 (471)
Q Consensus       191 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~  264 (471)
                      .+|..-|+++.|.+.|.     .+++|+.|++|+|||.....    +....+.|.. .|..+.|.+  -|+.+++++.|+
T Consensus        10 s~h~DlihdVs~D~~GR-----RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR-----RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             cCCcceeeeeeecccCc-----eeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCccccceEEEEecCC
Confidence            47888899999999998     69999999999999975443    4556667776 889998854  489999999999


Q ss_pred             eEEeccccc-cccC------------CCCcceEEEEECC--CCCEEEEEecCCeEEEEECCCCc------EEEEee----
Q psy11350        265 SWRLDTPLA-NLEG------------HEPFRVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQGQ------EVLHQE----  319 (471)
Q Consensus       265 ~~~~~~~~~-~~~~------------~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~----  319 (471)
                      ++.+|.... ....            .....|+.+.|.|  -|-.|++++.||.++||+.-..-      ....+.    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            988865421 1111            1245799999999  46689999999999999875432      222222    


Q ss_pred             ---CCCCCeEEEEEeC---CCCEEEEEeCC-----CeEEEEeCCCC----eeEEEecccCcCEEEEEEcCC----CCEEE
Q psy11350        320 ---GHGKPVYCMSFQG---DGSVVATGGLD-----AFGRVWDLRTG----RCIMFLEGHLKSVFSVDFSPD----GYHLA  380 (471)
Q Consensus       320 ---~~~~~v~~~~~s~---d~~~l~t~~~d-----g~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~----~~~l~  380 (471)
                         .+..+..|+.|+|   ...+|++|+.+     +.++||....+    ..+.++.+|..+|++++|.|+    -..||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence               3567788999998   34688888766     47888876543    345678899999999999995    24789


Q ss_pred             EEeCCCcEEEEECCCcc-----------------chheecccCCCccceeeccccceeeeecccC-CCcccccchhhhcc
Q psy11350        381 TGSEDNAVKIWDLRKRR-----------------LLKWCTQLLPNSIGVTSLLTDLYIDVLESLN-PGIGNIISSALKEQ  442 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~  442 (471)
                      +++.|| |+||.+....                 .+..+.....+...+..+..+..-.++.+.+ .+..+++.+.+...
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~  322 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL  322 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence            999999 9999997422                 1222233333444555555555444444433 24445555555444


Q ss_pred             cccc
Q psy11350        443 VEPI  446 (471)
Q Consensus       443 ~~~~  446 (471)
                      ..+.
T Consensus       323 ~kC~  326 (361)
T KOG2445|consen  323 WKCT  326 (361)
T ss_pred             heee
Confidence            4443

>KOG0771|consensus

Probab=99.81  E-value=6.2e-19  Score=158.45  Aligned_cols=197  Identities=23%  Similarity=0.331  Sum_probs=152.4

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        156 SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      .+++|+++|..|++|+.||+++||++++...+.....|...|.++.|+|++.     +|++-+.| ..+||+++++.++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-----~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-----FLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-----EEEEecCC-ceEEEEeccCchhh
Confidence            6789999999999999999999999999888888889999999999999998     79999999 99999999996666


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC---C--EEEEEecCCeEEEEECC
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG---R--FLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~--~l~~~~~dg~i~iwd~~  310 (471)
                      .......                                     +.....+.|+.++   .  .++.....+.|+.||+.
T Consensus       222 ~~t~~~k-------------------------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~  264 (398)
T KOG0771|consen  222 RKTPFSK-------------------------------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS  264 (398)
T ss_pred             hcCCccc-------------------------------------chhhhhceecccCCCceEEEEEecCCCCceeEEEee
Confidence            5542221                                     1123344444443   1  12222233445555543


Q ss_pred             CCcE-----EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe-cccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        311 QGQE-----VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL-EGHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       311 ~~~~-----~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      ....     ..........|++++.++||++++.|+.||.|-|++..+.++++.. +.|...|+.+.|+|+.+++++.+.
T Consensus       265 ~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  265 LWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             eeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence            3211     1222223457999999999999999999999999999988877655 479999999999999999999999


Q ss_pred             CCcEEEEECCC
Q psy11350        385 DNAVKIWDLRK  395 (471)
Q Consensus       385 dg~i~iwd~~~  395 (471)
                      |....|..+.-
T Consensus       345 ~~~~~v~~l~v  355 (398)
T KOG0771|consen  345 DNEAAVTKLAV  355 (398)
T ss_pred             CCceeEEEEee
Confidence            99998887765

>KOG1009|consensus

Probab=99.81  E-value=2.8e-18  Score=153.22  Aligned_cols=253  Identities=21%  Similarity=0.266  Sum_probs=188.5

Q ss_pred             ccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC--------C--------CceEEEeecCCCCEEEEEEee
Q psy11350        141 SLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP--------E--------CELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       141 ~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      .+.....+.+|.+.|+++.|+|+|..||+|+.+|.|.+|-..        +        ......+.+|...|..++|+|
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~  133 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP  133 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence            455667788999999999999999999999999999999765        2        223456778999999999999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEE---e---------c--c
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR---L---------D--T  270 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~---~---------~--~  270 (471)
                      ++.     ++++++.|.++++||+..|+....+..|.. .+..++|.|-++++++-+.|....   +         .  .
T Consensus       134 d~~-----~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~  207 (434)
T KOG1009|consen  134 DSN-----FLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI  207 (434)
T ss_pred             CCc-----eeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence            998     799999999999999999999999988887 899999999999999988886311   1         0  0


Q ss_pred             ccccccCCCC-------------cceEEEEECCCCCEEEEEec----CC-----eEEEEECCC-CcEEEEeeCCCCCeEE
Q psy11350        271 PLANLEGHEP-------------FRVSRIKFHPSGRFLGTCCW----DH-----SWRLWDLNQ-GQEVLHQEGHGKPVYC  327 (471)
Q Consensus       271 ~~~~~~~~~~-------------~~v~~l~~~~~~~~l~~~~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~v~~  327 (471)
                      .......+..             .-...++|+|+|.++++...    .+     +.++|+-.. .++...+.....++..
T Consensus       208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la  287 (434)
T KOG1009|consen  208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA  287 (434)
T ss_pred             eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence            0000011111             12446789999999887532    22     234554332 2345555666666666


Q ss_pred             EEEeCC-----------------CCEEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEEEEcCCCCEEEEEeCCCcEE
Q psy11350        328 MSFQGD-----------------GSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       328 ~~~s~d-----------------~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~i~  389 (471)
                      +.|+|-                 .+++++-...+.|+|||..+..++.... -|-..|+.++|++||.+|+..|.||...
T Consensus       288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             EEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence            666541                 1233333456679999999887776554 4778999999999999999999999988


Q ss_pred             EEECCCccch
Q psy11350        390 IWDLRKRRLL  399 (471)
Q Consensus       390 iwd~~~~~~~  399 (471)
                      +--+...++-
T Consensus       368 ~vtfe~~elg  377 (434)
T KOG1009|consen  368 LVTFEPWELG  377 (434)
T ss_pred             EEEEcchhcc
Confidence            8887766554

>KOG0270|consensus

Probab=99.80  E-value=8e-19  Score=158.33  Aligned_cols=202  Identities=22%  Similarity=0.297  Sum_probs=156.8

Q ss_pred             eecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        148 QVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ..||+..|.+++|+.+ ...||+||.|.+|++||+.+|++..++..|...|.++.|+|....    +|++|+.|++|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~----~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPS----VLLSGSYDGTVALK  314 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCce----EEEeccccceEEee
Confidence            4489999999999876 457899999999999999999999999999999999999998875    89999999999999


Q ss_pred             eCCCCccee-eecCCCCcceEEEEECCCCC-EEEEEeCCCeEEe------ccccccccCCCCcceEEEEECCCC-CEEEE
Q psy11350        227 SLDKDTPLA-NLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRL------DTPLANLEGHEPFRVSRIKFHPSG-RFLGT  297 (471)
Q Consensus       227 d~~~~~~~~-~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~  297 (471)
                      |.+...... .++.  ...|..++|.|... .++++..||.++.      ..++..+..| ..+|.++++++.- .++++
T Consensus       315 D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  315 DCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             eccCccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceee
Confidence            998432221 1221  22789999999876 4556667787544      3566778888 5589999999854 57889


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCC---CCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGH---GKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~d~-~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                      ++.|+.|++|++....+... ..|   -+...|+++.|+- -.++.|+..+.++|||+.+...+
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccceEEEEeecCCCCccc-ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            99999999999875433211 112   2336677777754 46778888888999999877554

>KOG0303|consensus

Probab=99.80  E-value=9.9e-19  Score=155.45  Aligned_cols=198  Identities=25%  Similarity=0.398  Sum_probs=152.7

Q ss_pred             CCEEEEE---eCCCcEEEEeC-CCCceE---EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee
Q psy11350        164 SQHVATA---SWSGLCKLWTV-PECELV---QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       164 ~~~l~tg---~~dg~i~iwd~-~~~~~~---~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  236 (471)
                      .++||..   +..|...+.-+ ++|+.-   -.+.+|.++|..++|+|.+.+    .|++|+.|.+|.||.+..+.....
T Consensus        44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~----vIASgSeD~~v~vW~IPe~~l~~~  119 (472)
T KOG0303|consen   44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC----VIASGSEDTKVMVWQIPENGLTRD  119 (472)
T ss_pred             CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc----eeecCCCCceEEEEECCCcccccC
Confidence            3566542   22334444433 234332   245689999999999999876    899999999999999876644333


Q ss_pred             ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCC-CCEEEEEecCCeEEEEECCCCcEE
Q psy11350        237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQEV  315 (471)
Q Consensus       237 ~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~  315 (471)
                      +.                               .+...+.+| ...|..++|+|. .+.|++++.|.+|.+||+.+++.+
T Consensus       120 lt-------------------------------epvv~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal  167 (472)
T KOG0303|consen  120 LT-------------------------------EPVVELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL  167 (472)
T ss_pred             cc-------------------------------cceEEEeec-ceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence            32                               344556666 447999999995 458899999999999999999988


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC-EEEEEEcCCCCEEEEEe---CCCcEEEE
Q psy11350        316 LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS-VFSVDFSPDGYHLATGS---EDNAVKIW  391 (471)
Q Consensus       316 ~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~s~s---~dg~i~iw  391 (471)
                      .++. |...|+++.|+.||.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|..+|.++-||-   .+..+.+|
T Consensus       168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLw  246 (472)
T KOG0303|consen  168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALW  246 (472)
T ss_pred             eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceecc
Confidence            8887 9999999999999999999999999999999999999888888763 44556777888554442   56789999


Q ss_pred             ECCCccc
Q psy11350        392 DLRKRRL  398 (471)
Q Consensus       392 d~~~~~~  398 (471)
                      |-.+-..
T Consensus       247 dp~nl~e  253 (472)
T KOG0303|consen  247 DPNNLEE  253 (472)
T ss_pred             CcccccC
Confidence            9776543

>KOG1963|consensus

Probab=99.80  E-value=2.4e-17  Score=160.81  Aligned_cols=247  Identities=19%  Similarity=0.346  Sum_probs=183.0

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  236 (471)
                      ...||+|+++++... +..|.||.+.++.++..+.+|..+++.+.+.|...+  ..++++++.||.|++||...+..+.+
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~--~~~~~~~sl~G~I~vwd~~~~~Llkt   97 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSEN--ANYLIVCSLDGTIRVWDWSDGELLKT   97 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCcc--ceEEEEEecCccEEEecCCCcEEEEE
Confidence            346899999988877 789999999999999999999999999999998764  33688999999999999988877776


Q ss_pred             ecCCCCcce---------------------------------------------------------EEEEECCCCCEEEE
Q psy11350        237 LEGHEPFRV---------------------------------------------------------SRIKFHPSGRFLGT  259 (471)
Q Consensus       237 ~~~~~~~~v---------------------------------------------------------~~~~~s~~~~~i~~  259 (471)
                      +..+....+                                                         .++.+++.|.+...
T Consensus        98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen   98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI  177 (792)
T ss_pred             EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence            654432110                                                         11111222222222


Q ss_pred             EeCCCe--EEecc-----ccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCC--C--cEEEEeeCCCCCeEEE
Q psy11350        260 CCWDHS--WRLDT-----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ--G--QEVLHQEGHGKPVYCM  328 (471)
Q Consensus       260 ~~~d~~--~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~  328 (471)
                      ....+.  |....     .......++...+++.++||++++++++..||.|.+|.--.  .  .....+.-|..+|+++
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence            211111  11111     01112223344589999999999999999999999996432  1  1234566689999999


Q ss_pred             EEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       329 ~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      +|+++|.+|++||..|.+.+|.+.+++ .+.+..-.++|..+.+|||+.+.+....|+.|.+-...+.....++.+..+
T Consensus       258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~  335 (792)
T KOG1963|consen  258 SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP  335 (792)
T ss_pred             EEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence            999999999999999999999999998 445666778999999999999999999999999998866655555544433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.4e-16  Score=155.94  Aligned_cols=250  Identities=36%  Similarity=0.624  Sum_probs=202.4

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eEEEeecCCC-CEEEEEE-eeCCCCCCccEEEE-EeCCCc
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-LVQTFRGHDC-NVGAIEF-HPLPSEGAVCSLAS-CAQDGS  222 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~l~~-~~~~~~~~~~~l~s-~~~dg~  222 (471)
                      ...+|...|.++.|.+.+..++.++.++.+.+|+...+. ....+..+.. .+..+.+ ++++..    .++. +..|+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~  135 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS----ILLASSSLDGT  135 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce----EEeccCCCCcc
Confidence            456899999999999999999999999999999998876 6677766443 7777777 555541    3444 344999


Q ss_pred             EEEEeCCC-CcceeeecCCCCcceEEEEECCCCCEEEEEeC-CCeEEeccc-----cccccCCCCcceEEEEECCCCC-E
Q psy11350        223 VKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGR-F  294 (471)
Q Consensus       223 i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~-~  294 (471)
                      +.+|+... ......+..|.. .+..+.|+|++.+++.++. ++.+.++..     ...+.+| ...+.+++|+|++. .
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~  213 (466)
T COG2319         136 VKLWDLSTPGKLIRTLEGHSE-SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EEEEEecCCCeEEEEEecCcc-cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcceE
Confidence            99999987 677777777776 8899999999998888875 888666533     3344554 56899999999998 5


Q ss_pred             EEEEecCCeEEEEECCCCcEEE-EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee-EEEecccCcCEEEEEE
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVL-HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC-IMFLEGHLKSVFSVDF  372 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~  372 (471)
                      +++++.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++|++..... +..+.+|...+.++.|
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  292 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF  292 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence            5555999999999999887777 688888875 448999998999999999999999987664 4455678899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|++..+++++.|+.+.+||+.+........
T Consensus       293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             CCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            9988888889999999999998887666554

>KOG1034|consensus

Probab=99.80  E-value=6.5e-18  Score=146.98  Aligned_cols=203  Identities=25%  Similarity=0.360  Sum_probs=160.0

Q ss_pred             eecCCcCeEEEEEecC-----CCEEEEEeCCCcEEEEeCCCCc---eEEEee--cCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        148 QVGDTRPISYCSFSPD-----SQHVATASWSGLCKLWTVPECE---LVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~-----~~~l~tg~~dg~i~iwd~~~~~---~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ..+|+.+|..++|++-     -..+|+.+ ...+.+|.....-   .++.+.  .|......++|+-+....+. +++.+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p-~la~~  111 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP-FLAAG  111 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe-eEEee
Confidence            4578999999999852     23456665 6788888876432   333333  36677888999887665444 78888


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC-CEEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG-RFLG  296 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~  296 (471)
                      +.-|.|+|.|+.++++...+.+|..                                       .|..+.++|+. ++++
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~---------------------------------------sINeik~~p~~~qlvl  152 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGG---------------------------------------SINEIKFHPDRPQLVL  152 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCc---------------------------------------cchhhhcCCCCCcEEE
Confidence            8999999999999988877777654                                       68889999954 6899


Q ss_pred             EEecCCeEEEEECCCCcEEEEe---eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe------eE----------
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQ---EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR------CI----------  357 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~------~~----------  357 (471)
                      ++|.|.+|++|++++..++..+   .+|...|.++.|+++|.+|+++++|..+++|++...+      +.          
T Consensus       153 s~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~  232 (385)
T KOG1034|consen  153 SASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTR  232 (385)
T ss_pred             EecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccC
Confidence            9999999999999999998876   6799999999999999999999999999999987321      00          


Q ss_pred             ------E------EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        358 ------M------FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       358 ------~------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                            .      +-.-|...|.|+.|-  |.++++=|-++.|..|..
T Consensus       233 pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  233 PFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             cCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence                  0      112466777788885  689999999999999987

>KOG1188|consensus

Probab=99.80  E-value=4.3e-18  Score=148.90  Aligned_cols=201  Identities=17%  Similarity=0.350  Sum_probs=158.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeC-CCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL-PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      ..+|++..+|.|++||..+++.+..+++|...++.+.|... +.+    .+.+|+.||+|++||+++......+....  
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h----~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~--  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPH----GVISCSSDGTVRLWDIRSQAESARISWTQ--  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCC----eeEEeccCCeEEEEEeecchhhhheeccC--
Confidence            56888888999999999999999999999999999999885 333    79999999999999998776544433221  


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec----CCeEEEEECCCCcE-EEE-
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW----DHSWRLWDLNQGQE-VLH-  317 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~-  317 (471)
                                                        +.+.+..+++.+-.++.+++|+.    +-.|.+||++..+. +.. 
T Consensus       115 ----------------------------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~  160 (376)
T KOG1188|consen  115 ----------------------------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL  160 (376)
T ss_pred             ----------------------------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh
Confidence                                              11234566666666777777754    56799999998766 444 


Q ss_pred             eeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCe---eEEEecccCcCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q psy11350        318 QEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGR---CIMFLEGHLKSVFSVDFSPDG-YHLATGSEDNAVKIWD  392 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~i~iwd  392 (471)
                      ...|...|+++.|+| +.++|++|+.||.|.|||+....   .+.....|...|.++.|+.++ +.|.+-+..++..+|+
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE  240 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence            467999999999999 77899999999999999987542   233333577889999999876 3578888999999999


Q ss_pred             CCCccchheeccc
Q psy11350        393 LRKRRLLKWCTQL  405 (471)
Q Consensus       393 ~~~~~~~~~~~~~  405 (471)
                      ++.+....++..+
T Consensus       241 le~~~~~~~~~~~  253 (376)
T KOG1188|consen  241 LEDGSEETWLENP  253 (376)
T ss_pred             ccCCChhhcccCc
Confidence            9999877666544

>KOG0649|consensus

Probab=99.79  E-value=2.6e-17  Score=137.46  Aligned_cols=215  Identities=18%  Similarity=0.211  Sum_probs=157.9

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCC----------CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPE----------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      |.+-+|+|.+++|++|..+|.|.+..+.+          ...+...++|.++|..++|+.+       .|++|+ ||.|+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-------~Lls~g-dG~V~   84 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-------FLLSGG-DGLVY   84 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-------heeecc-CceEE
Confidence            33447899999999999999999998853          2344556899999999999943       466665 59999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      =|..+........+                         ..|.+..+...-... --.|+++...|..+-++.++.|+.+
T Consensus        85 gw~W~E~~es~~~K-------------------------~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~AgGD~~~  138 (325)
T KOG0649|consen   85 GWEWNEEEESLATK-------------------------RLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFAGGDGVI  138 (325)
T ss_pred             Eeeehhhhhhccch-------------------------hhhhhcCccccCccc-CCccceeEeccCCCcEEEecCCeEE
Confidence            99875432210000                         001111111110111 1258999999988877777889999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc---------cC-cCEEEEEEcC
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG---------HL-KSVFSVDFSP  374 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------h~-~~v~~~~~sp  374 (471)
                      +-||+++|+..+.+.+|++.|.++.--.....+++|+.||+++|||.++++++..+..         |. ..|-+++-  
T Consensus       139 y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--  216 (325)
T KOG0649|consen  139 YQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--  216 (325)
T ss_pred             EEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--
Confidence            9999999999999999999999999855556789999999999999999998887643         22 23556655  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheecccC
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                      +..+|++|+ ...+.+|.++..++.++|+.+.
T Consensus       217 ~edWlvCGg-Gp~lslwhLrsse~t~vfpipa  247 (325)
T KOG0649|consen  217 NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPA  247 (325)
T ss_pred             cCceEEecC-CCceeEEeccCCCceEEEeccc
Confidence            456777765 4579999999999988776543

>KOG4378|consensus

Probab=99.78  E-value=1e-17  Score=153.08  Aligned_cols=204  Identities=18%  Similarity=0.268  Sum_probs=167.2

Q ss_pred             chhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCC-CCEEEEEEee
Q psy11350        126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD-CNVGAIEFHP  204 (471)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~  204 (471)
                      ....+.+|+++..+    ....+.+|+..|+++.++....|||+++..|.|.|..+.++.....|.... ..|.-+.|+|
T Consensus        99 ~~~~Vkiwdl~~kl----~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~  174 (673)
T KOG4378|consen   99 QSGCVKIWDLRAKL----IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP  174 (673)
T ss_pred             cCceeeehhhHHHH----HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence            34455667766432    345677999999999999999999999999999999999988887776543 4456899999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceE
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVS  284 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~  284 (471)
                      ....    +|.+++.+|.|.+||+....++..+...+                                      ..+..
T Consensus       175 skr~----lL~~asd~G~VtlwDv~g~sp~~~~~~~H--------------------------------------sAP~~  212 (673)
T KOG4378|consen  175 SKRF----LLSIASDKGAVTLWDVQGMSPIFHASEAH--------------------------------------SAPCR  212 (673)
T ss_pred             ccce----eeEeeccCCeEEEEeccCCCcccchhhhc--------------------------------------cCCcC
Confidence            8876    78899999999999998776665543222                                      34678


Q ss_pred             EEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecc
Q psy11350        285 RIKFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEG  362 (471)
Q Consensus       285 ~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~  362 (471)
                      .|+|+|.. .+|++.+.|..|.+||.+..+....+. ...|...++|+++|.+|++|...|.|..||++.. .++..+..
T Consensus       213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             cceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            89999954 578889999999999999776655554 4678999999999999999999999999999865 67888999


Q ss_pred             cCcCEEEEEEcCCC
Q psy11350        363 HLKSVFSVDFSPDG  376 (471)
Q Consensus       363 h~~~v~~~~~sp~~  376 (471)
                      |...|++++|-|..
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            99999999998764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=1.8e-15  Score=148.07  Aligned_cols=244  Identities=36%  Similarity=0.634  Sum_probs=192.3

Q ss_pred             eeeecCC-cCeEEEEE-ecCCC-EEEEEeC-CCcEEEEeCCC-CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-
Q psy11350        146 CSQVGDT-RPISYCSF-SPDSQ-HVATASW-SGLCKLWTVPE-CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-  219 (471)
Q Consensus       146 ~~~~gh~-~~V~~~~~-s~~~~-~l~tg~~-dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-  219 (471)
                      ..+.++. ..+..+.+ ++++. +++..+. ++.+.+|+... ......+..|...|..++|+|++.     .+++++. 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~  176 (466)
T COG2319         102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK-----LLASGSSL  176 (466)
T ss_pred             EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC-----EEEecCCC
Confidence            3344433 47777777 88887 5555444 89999999988 788888999999999999999998     5777775 


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccc-----cc-cccCCCCcceEEEEECCCC
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTP-----LA-NLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~-----~~-~~~~~~~~~v~~l~~~~~~  292 (471)
                      |+.+++|++..+..+..+..|.. .+.+++|+|++. .+++++.|+.+.+|..     .. .+..|.. .. ...|+|++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~  253 (466)
T COG2319         177 DGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDG  253 (466)
T ss_pred             CCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCC
Confidence            99999999988888888888666 899999999998 5555588888765521     11 2444422 22 22899999


Q ss_pred             CEEEEEecCCeEEEEECCCCcE-EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec--ccCcCEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQE-VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE--GHLKSVFS  369 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~  369 (471)
                      .++++++.|+.+++|++..... +..+.+|...+.++.|+|++..+++++.|+.+.+||..+........  .|...+..
T Consensus       254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
T COG2319         254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS  333 (466)
T ss_pred             CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE
Confidence            8999999999999999987665 44446889999999999988888889999999999998887666665  78888999


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEECCCcc
Q psy11350        370 VDFSPDGYHLATG-SEDNAVKIWDLRKRR  397 (471)
Q Consensus       370 ~~~sp~~~~l~s~-s~dg~i~iwd~~~~~  397 (471)
                      +.|.+++..++.+ ..|+.+.+|++....
T Consensus       334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            9994343555555 688999999999887

>KOG4227|consensus

Probab=99.78  E-value=3.6e-17  Score=145.36  Aligned_cols=240  Identities=19%  Similarity=0.210  Sum_probs=183.7

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC------CCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP------ECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~------~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      +.+|.+.|.++.||.++++|++|+.|..+++|++.      +.+++.... .|.+.|.|++|...+.     .+++|+.+
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-----~~~SG~~~  126 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-----FLYSGERW  126 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-----eEecCCCc
Confidence            35899999999999999999999999999999985      345555443 4568999999998877     79999999


Q ss_pred             CcEEEEeCCCCcceeeecCCC-CcceEEEEECCCCCEEEEEeCCCeEEecccc-------ccccCCCCcceEEEEECCCC
Q psy11350        221 GSVKLWSLDKDTPLANLEGHE-PFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-------ANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-------~~~~~~~~~~v~~l~~~~~~  292 (471)
                      ++|.+.|+++.+.+..+.... ...|+.+..+|..+.+++.+.++.+.++...       ..+....+.....+.|+|..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            999999999998888776543 3479999999999999999999986654321       11223334567888999954


Q ss_pred             -CEEEEEecCCeEEEEECCCCc-----------------------------EE---------EE----------e-eCCC
Q psy11350        293 -RFLGTCCWDHSWRLWDLNQGQ-----------------------------EV---------LH----------Q-EGHG  322 (471)
Q Consensus       293 -~~l~~~~~dg~i~iwd~~~~~-----------------------------~~---------~~----------~-~~~~  322 (471)
                       .+|++.+..+-+-+||.+..+                             .+         ..          + ..|.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence             577888888889999986321                             00         00          0 0111


Q ss_pred             -------CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----------------------CeeEEEecccCcCEEEEEE
Q psy11350        323 -------KPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-----------------------GRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       323 -------~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~~~~  372 (471)
                             ..+.+++|..| ..+++|+.+-.|++|.+..                       .+.+..++||..-+..+.|
T Consensus       287 ~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF  365 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF  365 (609)
T ss_pred             CCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence                   12445666544 3488999999999998752                       1234568899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEC
Q psy11350        373 SPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +|...+|++.+-.+.++||.-
T Consensus       366 ~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  366 SQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cCCcceEeccchhhheecccc
Confidence            999999999999999999964

>KOG1272|consensus

Probab=99.78  E-value=7.3e-19  Score=159.36  Aligned_cols=261  Identities=18%  Similarity=0.164  Sum_probs=206.4

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .-..+.++.+|++|+.|+.-|.|-.+|..++++...+.. ...|..+.|..+..      ++.......+.|||- .|..
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq------~~AVAQK~y~yvYD~-~GtE  202 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ------FFAVAQKKYVYVYDN-NGTE  202 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH------HHHhhhhceEEEecC-CCcE
Confidence            446788999999999999999999999999998888764 46788999988776      455556788999994 6666


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ  313 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  313 (471)
                      ++.++.+.                                        .|..+.|-|..-+|++++..|.++.-|+.+|+
T Consensus       203 lHClk~~~----------------------------------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk  242 (545)
T KOG1272|consen  203 LHCLKRHI----------------------------------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK  242 (545)
T ss_pred             EeehhhcC----------------------------------------chhhhcccchhheeeecccCCceEEEeechhh
Confidence            66665544                                        48889999998899999999999999999999


Q ss_pred             EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        314 EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       314 ~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      .+..+....+.+..++-+|-+..+-+|...|+|.+|...+.+++..+-.|.++|.+|++.++|+|++|.+.|..++|||+
T Consensus       243 lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  243 LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            99988888889999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchheecccCC------CccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEe
Q psy11350        394 RKRRLLKWCTQLLP------NSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMV  467 (471)
Q Consensus       394 ~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~  467 (471)
                      ++...+.++..+.+      +....++++....+.+|.....+........+     .-.+...+..|.|.|-..+|.|.
T Consensus       323 R~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm-----~H~~~~~V~~l~FcP~EDvLGIG  397 (545)
T KOG1272|consen  323 RNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYM-----NHRCGGPVEDLRFCPYEDVLGIG  397 (545)
T ss_pred             ccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchh-----hhccCcccccceeccHHHeeecc
Confidence            99987777765333      22244445555555555544332211111111     11223367788888877777653

>KOG1963|consensus

Probab=99.78  E-value=2.3e-16  Score=154.05  Aligned_cols=241  Identities=18%  Similarity=0.271  Sum_probs=173.7

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      -..|+-.++|.++||+++++|+|..||.|.+|.--.    ....+.+.-|...|++++|+++|.     +|++|+..|.+
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-----~LlSGG~E~VL  275 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-----YLLSGGREGVL  275 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-----eEeecccceEE
Confidence            346888899999999999999999999999997432    234556778999999999999999     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccc----------cCCCCcceEEEEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANL----------EGHEPFRVSRIKF  288 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~----------~~~~~~~v~~l~~  288 (471)
                      .+|.+.+++  +.|-..-+.+|..+.++||+.+.+....|..+.+-..     ...+          ......-.+.+++
T Consensus       276 v~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  276 VLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             EEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            999999887  5555555559999999999999999999998665111     0011          1111223556777


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEE---------------------------------------------------
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLH---------------------------------------------------  317 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------------------  317 (471)
                      +|..+.++..+..|.|.+||+-+...+..                                                   
T Consensus       354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence            77666666666677777777643221111                                                   


Q ss_pred             -----------------eeCCCCCeEEEEEeC-C-CCEEEEEeCCCeEEEEeCCCC----------eeEEEecccCcCEE
Q psy11350        318 -----------------QEGHGKPVYCMSFQG-D-GSVVATGGLDAFGRVWDLRTG----------RCIMFLEGHLKSVF  368 (471)
Q Consensus       318 -----------------~~~~~~~v~~~~~s~-d-~~~l~t~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~  368 (471)
                                       ..+|...+...++.+ . ...+++++.||.++||-+...          .|...-.-|..+++
T Consensus       434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~  513 (792)
T KOG1963|consen  434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT  513 (792)
T ss_pred             EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence                             124555444555544 2 227889999999999987321          22222223788999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +++|+.||..| +.+.|++|.+||..+.
T Consensus       514 a~~fs~dGsll-a~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  514 ALCFSQDGSLL-AVSFDDTITIWDYDTK  540 (792)
T ss_pred             chhhcCCCcEE-EEecCCEEEEecCCCh
Confidence            99999999655 5567889999999984

>KOG1587|consensus

Probab=99.78  E-value=4.3e-16  Score=151.77  Aligned_cols=222  Identities=18%  Similarity=0.162  Sum_probs=164.5

Q ss_pred             CCcEEEEeCCCC-ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc--e---eeecCCCCcceE
Q psy11350        173 SGLCKLWTVPEC-ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP--L---ANLEGHEPFRVS  246 (471)
Q Consensus       173 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~---~~~~~~~~~~v~  246 (471)
                      ++.+.||++... .+...+. -...|.++.|+|...+    +++.|..+|.|.+||+..+..  .   .........++.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~----ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPN----LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT  295 (555)
T ss_pred             CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcc----eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence            357999999876 3444443 4688999999999886    899999999999999987654  2   222333344899


Q ss_pred             EEEECCCCCE--EEEEeCCCeEEeccccc------c----------ccCCCCcceEEEEECC-CCCEEEEEecCCeEEEE
Q psy11350        247 RIKFHPSGRF--LGTCCWDHSWRLDTPLA------N----------LEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLW  307 (471)
Q Consensus       247 ~~~~s~~~~~--i~~~~~d~~~~~~~~~~------~----------~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iw  307 (471)
                      .+.|..+-..  |++++.||.+..|....      .          ........+++++|.+ +...|++|+.+|.|.--
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~  375 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG  375 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence            9999776554  99999999966542110      0          0112234688999998 55689999999998874


Q ss_pred             ECCCCc--------EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCeeEEEecccCcCEEEEEEcCC-CC
Q psy11350        308 DLNQGQ--------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR-TGRCIMFLEGHLKSVFSVDFSPD-GY  377 (471)
Q Consensus       308 d~~~~~--------~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~sp~-~~  377 (471)
                      +....+        ....+..|.++|+++.++|=+..++..+.|.+++||... ...++..+..+...|++++|||- ..
T Consensus       376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA  455 (555)
T ss_pred             eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence            433222        133456789999999999966544444459999999987 66788888888888999999995 45


Q ss_pred             EEEEEeCCCcEEEEECCCccch
Q psy11350        378 HLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       378 ~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      .|+++..||.|.+||+.....-
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             EEEEEcCCCceehhhhhccccC
Confidence            7788888999999999866543

>KOG1524|consensus

Probab=99.77  E-value=5.9e-18  Score=156.01  Aligned_cols=204  Identities=14%  Similarity=0.288  Sum_probs=164.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcc
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR  244 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  244 (471)
                      ..|+.++.||.+.|.+ +.++..+.+..|.+.|.+-.|+|+|.     -|++++.||.|++|. ++|-...++... ..+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGt-----gLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~  147 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGA-----GLLTAGEDGVIKIWS-RSGMLRSTVVQN-EES  147 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCc-----eeeeecCCceEEEEe-ccchHHHHHhhc-Cce
Confidence            4677888899999988 67888888999999999999999998     599999999999998 355443333333 348


Q ss_pred             eEEEEECCCCCEEEEEeCCCeE-Ee---ccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC
Q psy11350        245 VSRIKFHPSGRFLGTCCWDHSW-RL---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~~d~~~-~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  320 (471)
                      |.|++|.|+...++.+..+... +.   .........| .+-|.++.|++..+.+++|+.|-..++||.. |..+.....
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~  225 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA  225 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEecc-CcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh
Confidence            9999999999988888776652 22   3344456677 6689999999999999999999999999964 677888888


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iw  391 (471)
                      |..+|++++|.|+ ..++.++.. +++           .-....+.|..++||+||..++.|+..|.+.+=
T Consensus       226 ~ey~ITSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  226 EEYAITSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             hccceeeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            9999999999999 666666542 333           112356789999999999999999999987653

>KOG2919|consensus

Probab=99.77  E-value=4.5e-17  Score=141.48  Aligned_cols=227  Identities=20%  Similarity=0.284  Sum_probs=173.5

Q ss_pred             cCeEEEEEe-------cCCCEEEEEeCCCcEEEEeCCCCceEEEeec--CCCC---EEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        153 RPISYCSFS-------PDSQHVATASWSGLCKLWTVPECELVQTFRG--HDCN---VGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       153 ~~V~~~~~s-------~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--h~~~---v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      ..|...+|-       |+..++|+.+.+.-|.+||.-+|+....+++  |...   ..+++|+|++.     .|+ ++..
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-----qlf-aGyk  178 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-----QLF-AGYK  178 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-----eEe-eccc
Confidence            456666664       6778899999999999999999999888774  3333   45899999998     454 5567


Q ss_pred             CcEEEEeC-CCCcceee--ecC----CCCcceEEEEECCCCC-EEEEEeCCCeEEe-----ccccccccCCCCcceEEEE
Q psy11350        221 GSVKLWSL-DKDTPLAN--LEG----HEPFRVSRIKFHPSGR-FLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIK  287 (471)
Q Consensus       221 g~i~iwd~-~~~~~~~~--~~~----~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~-----~~~~~~~~~~~~~~v~~l~  287 (471)
                      ..|+++|+ +.|.....  ...    .....+.+++|+|-.. .+++++....+.+     ..+...+-+| .+.|+.+.
T Consensus       179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~  257 (406)
T KOG2919|consen  179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQ  257 (406)
T ss_pred             ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEE
Confidence            89999998 44542221  111    1133788999999765 8888888777555     3455566666 66899999


Q ss_pred             ECCCCCEEEEEec-CCeEEEEECCCC-cEEEEeeCCCC-CeEE--EEEeCCCCEEEEEeCCCeEEEEeCCC-CeeEEEec
Q psy11350        288 FHPSGRFLGTCCW-DHSWRLWDLNQG-QEVLHQEGHGK-PVYC--MSFQGDGSVVATGGLDAFGRVWDLRT-GRCIMFLE  361 (471)
Q Consensus       288 ~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~-~v~~--~~~s~d~~~l~t~~~dg~i~iwd~~~-~~~~~~~~  361 (471)
                      |.++|+.|++|.. |-.|..||++.. .++..+..|.. .-..  ....|++++|++|+.||.|++||++. +..+..+.
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~  337 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG  337 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence            9999999999875 678999999864 45566666655 2233  44567899999999999999999998 77788888


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        362 GHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       362 ~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      .|...++.++++|--.++++++...
T Consensus       338 ~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  338 NYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cccccccceecCcccceeeeccCce
Confidence            8999999999999978888877543

>KOG0307|consensus

Probab=99.77  E-value=1.7e-18  Score=173.26  Aligned_cols=207  Identities=22%  Similarity=0.321  Sum_probs=171.1

Q ss_pred             eeeeeecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      .......|+++|..+.|++... +||+|+.+|.|.|||+...+...++.  ...+.|.+++|+..-.+    +|++++.+
T Consensus       108 ~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh----ILAS~s~s  183 (1049)
T KOG0307|consen  108 VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH----ILASGSPS  183 (1049)
T ss_pred             HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH----HhhccCCC
Confidence            3444557999999999999866 99999999999999998765544442  24578999999987765    89999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCC-cceEEEEECCCCC-EEEEEeCCCe---EEecc------ccccccCCCCcceEEEEEC
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEP-FRVSRIKFHPSGR-FLGTCCWDHS---WRLDT------PLANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~-~i~~~~~d~~---~~~~~------~~~~~~~~~~~~v~~l~~~  289 (471)
                      |.+.|||++..+++..+..+.. ..+..++|+|++- .+++++.|..   +.+|.      +.+.+.+| ...|.++.|+
T Consensus       184 g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc  262 (1049)
T KOG0307|consen  184 GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWC  262 (1049)
T ss_pred             CCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccC
Confidence            9999999999988887776554 4588999999875 5666666544   44444      77888888 5579999999


Q ss_pred             CCC-CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCe
Q psy11350        290 PSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       290 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                      +.+ .+|++++.|+.|.+|+.++++.+..+......+..+.|.| +...+++++.||.|.||.+....
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            966 7999999999999999999999999988889999999999 45589999999999999987653

>KOG1310|consensus

Probab=99.76  E-value=9.6e-18  Score=155.07  Aligned_cols=232  Identities=24%  Similarity=0.368  Sum_probs=167.2

Q ss_pred             ccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        139 LTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       139 ~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ++.+.+...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+. +|...|.++.|.|..++   .++++|
T Consensus        37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn---riv~sg  113 (758)
T KOG1310|consen   37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN---RIVLSG  113 (758)
T ss_pred             HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC---eEEEec
Confidence            34455556677999999999999999999999999999999998888888775 89999999999997653   278999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC-CEEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG-RFLG  296 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~  296 (471)
                      ..|..|+++|+...+.-..-  +.. .                         .+...+..| ...|..++-.|++ +.|.
T Consensus       114 AgDk~i~lfdl~~~~~~~~d--~~~-~-------------------------~~~~~~~ch-t~rVKria~~p~~Phtfw  164 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMD--HGM-E-------------------------ETTRCWSCH-TDRVKRIATAPNGPHTFW  164 (758)
T ss_pred             cCcceEEEEecccccccccc--cCc-c-------------------------chhhhhhhh-hhhhhheecCCCCCceEE
Confidence            99999999998743211100  000 0                         122223333 4468888999988 7899


Q ss_pred             EEecCCeEEEEECCCCcEEE----------EeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC--------C---
Q psy11350        297 TCCWDHSWRLWDLNQGQEVL----------HQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT--------G---  354 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~--------~---  354 (471)
                      +++.||+|+-+|++......          .+.+.--...++.++| +..+|++|+.|-..++||.+.        +   
T Consensus       165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~  244 (758)
T KOG1310|consen  165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN  244 (758)
T ss_pred             EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence            99999999999998632110          1111223467899999 667999999999999999431        1   


Q ss_pred             -------eeEEEec-ccC-----------cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        355 -------RCIMFLE-GHL-----------KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       355 -------~~~~~~~-~h~-----------~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                             .++..+. +|.           ..++-+.|+|+|.-|+..-....|+++|+..++....+
T Consensus       245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence                   1222221 232           12567889999876665555568999999988776544

>KOG2394|consensus

Probab=99.76  E-value=2.6e-17  Score=152.00  Aligned_cols=198  Identities=19%  Similarity=0.277  Sum_probs=145.6

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceEEEee----cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee
Q psy11350        162 PDSQHVATASWSGLCKLWTVPECELVQTFR----GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL  237 (471)
Q Consensus       162 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  237 (471)
                      |.+--|.+|-..|.|.+.|....+..+.+.    -.+..|+|+.|.|.+..    .++.+-.+|.+.+||..-....   
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~sGnlyly~~~~~~~~---  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHASGNLYLYDKEIVCGA---  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc----eEEEEEecCceEEeeccccccC---
Confidence            556668888888999999876522222111    13478999999998876    7888889999999986211000   


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Q psy11350        238 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       238 ~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                            .-.+....+++..+..........- .++..+... ...|..++|+|||++||+.+.||.++|||+.+.+.+..
T Consensus       256 ------t~p~~~~~k~~~~f~i~t~ksk~~r-NPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  256 ------TAPSYQALKDGDQFAILTSKSKKTR-NPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             ------CCCcccccCCCCeeEEeeeeccccC-CccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence                  1112222334444443322221110 223222222 33689999999999999999999999999999888777


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        318 QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      ++..-+...|++|||||++|++|+.|--|.||.+...+.+..=++|...|..++|.|
T Consensus       328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            777778899999999999999999999999999999999999999999999999983

>KOG0642|consensus

Probab=99.76  E-value=2.6e-17  Score=152.97  Aligned_cols=233  Identities=19%  Similarity=0.284  Sum_probs=171.0

Q ss_pred             chhhhhhHHHHhh----ccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----------CceEEEee
Q psy11350        126 ATRTARNQELQKH----LTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE----------CELVQTFR  191 (471)
Q Consensus       126 ~~~~~~~~~~~~~----~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~  191 (471)
                      .+.....|.+++.    -..+....++++|.+||.|+++++++..+++|+-||+|+.|+++.          ......+.
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~  393 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL  393 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence            3445556666332    234566778999999999999999999999999999999997641          12345678


Q ss_pred             cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC-cceEEEEECCCCC-EEEEEeCCCeEEe-
Q psy11350        192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP-FRVSRIKFHPSGR-FLGTCCWDHSWRL-  268 (471)
Q Consensus       192 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~-~i~~~~~d~~~~~-  268 (471)
                      ||...|+.+++++...     .|++++.||++++|+.....+ ..|..... ....++.+..... +.++...-+...+ 
T Consensus       394 Ghtdavw~l~~s~~~~-----~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~  467 (577)
T KOG0642|consen  394 GHTDAVWLLALSSTKD-----RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSID  467 (577)
T ss_pred             ccccceeeeeeccccc-----ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccch
Confidence            9999999999999887     599999999999999876665 33332221 1334444433321 1111111111111 


Q ss_pred             ----ccccccc-----cCC-CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE
Q psy11350        269 ----DTPLANL-----EGH-EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       269 ----~~~~~~~-----~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                          ......+     .+. ....+..+.++|.+.+.+++..|+.|+++|..++..+.....|...++++++.|+|-+|+
T Consensus       468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~  547 (577)
T KOG0642|consen  468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM  547 (577)
T ss_pred             hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence                0001100     000 112477899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      +|+.|+.+++|.+....++.....|.
T Consensus       548 s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  548 SGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eecCCceeehhhccchheeecccccc
Confidence            99999999999998888877666664

>KOG4497|consensus

Probab=99.75  E-value=1.3e-16  Score=138.97  Aligned_cols=295  Identities=22%  Similarity=0.278  Sum_probs=196.9

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  236 (471)
                      -++|||+|+++|+++ +-.+.|=|..+.+..+.+.. -..|.-|.|..+...    .|.....++.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~----ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCH----ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHH-HHHhhheeeecccee----eeeeeeccceEEEEEeecceeEEE
Confidence            357999999999998 44888888887766554433 356778899987764    667778899999999988877777


Q ss_pred             ecCCCCcceEEEEECCCCCEEEEEe-CCCe---EEeccccccccCCCCcceEEEEECCCCCEEEEEecC-----------
Q psy11350        237 LEGHEPFRVSRIKFHPSGRFLGTCC-WDHS---WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----------  301 (471)
Q Consensus       237 ~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----------  301 (471)
                      +..... .+.++.|||||+.|+..+ .+-.   |.+.+....+..+.+..+..++|+|+|++.+..+.-           
T Consensus        87 Ideg~a-gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQA-GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCC-cceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            766555 899999999997766554 4444   444444444555556678899999999987766541           


Q ss_pred             -------------------------CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        302 -------------------------HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       302 -------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                                               ..+.+||---.-.+.. ..-+-.+..+.|+|.+++|++|+.|+.+||.+--+.++
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee-eeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                     2344554321111111 12345688899999999999999999998764322111


Q ss_pred             E------------------------------------------------------------EEec------ccCcCEEEE
Q psy11350        357 I------------------------------------------------------------MFLE------GHLKSVFSV  370 (471)
Q Consensus       357 ~------------------------------------------------------------~~~~------~h~~~v~~~  370 (471)
                      .                                                            ..++      ...-.+.-+
T Consensus       245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l  324 (447)
T KOG4497|consen  245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL  324 (447)
T ss_pred             hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence            0                                                            0011      112246678


Q ss_pred             EEcCCCCEEEEEeCC--CcEEEEECCCccchheecccCC--------CccceeeccccceeeeecccCCCcccccchhhh
Q psy11350        371 DFSPDGYHLATGSED--NAVKIWDLRKRRLLKWCTQLLP--------NSIGVTSLLTDLYIDVLESLNPGIGNIISSALK  440 (471)
Q Consensus       371 ~~sp~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  440 (471)
                      +|++|..+++|-.+.  +.+.+||++..++-..+.+.++        ....++.+....+..+|....+-.   +.    
T Consensus       325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~---V~----  397 (447)
T KOG4497|consen  325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV---VG----  397 (447)
T ss_pred             eecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE---Ee----
Confidence            999999999887543  6799999999887665554433        333444444445555555443210   00    


Q ss_pred             cccccceeeecccceeeeecCCeEEEeecC
Q psy11350        441 EQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       441 ~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                         .+.+ ..++.+|.+..+|..+++|+.+
T Consensus       398 ---vP~~-GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  398 ---VPKK-GFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             ---cCCC-CceeeeEEecCCCcEEEEEcCC
Confidence               0111 2468899999999999998865

>KOG0650|consensus

Probab=99.75  E-value=1.7e-16  Score=148.42  Aligned_cols=208  Identities=19%  Similarity=0.264  Sum_probs=164.0

Q ss_pred             EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC--EEEEEeCCC
Q psy11350        187 VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR--FLGTCCWDH  264 (471)
Q Consensus       187 ~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~i~~~~~d~  264 (471)
                      ...+++|++.|.+|...|.+.     .|++|+.||+|+||.+.+|.++.++....  .|.+++|+|.+.  .++++....
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~-----wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGE-----WLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcc-----eeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEecCc
Confidence            345789999999999999988     79999999999999999999999987665  799999999876  333333333


Q ss_pred             eEEe--------------------------------ccc---------cccccCCCCcceEEEEECCCCCEEEEEecC--
Q psy11350        265 SWRL--------------------------------DTP---------LANLEGHEPFRVSRIKFHPSGRFLGTCCWD--  301 (471)
Q Consensus       265 ~~~~--------------------------------~~~---------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--  301 (471)
                      .+.+                                |..         ++.... +...|..|.||..|.||++..-+  
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-HPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe-cCCccceeeeecCCceEEEeccCCC
Confidence            2111                                000         001111 24468899999999999998664  


Q ss_pred             -CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEE
Q psy11350        302 -HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       302 -g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  380 (471)
                       ..|.|.++.......-|....+.|.++.|+|...+|++++ ...|+|||+..+..+..+......|..++.+|.|..|+
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence             4699999987766666666678899999999888888876 46799999998888888777778999999999999999


Q ss_pred             EEeCCCcEEEEECCCc-cchheec
Q psy11350        381 TGSEDNAVKIWDLRKR-RLLKWCT  403 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~-~~~~~~~  403 (471)
                      .|+.|+.+..+|+.-. ++.+++.
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr  647 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLR  647 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhh
Confidence            9999999999999855 4555443

>KOG1523|consensus

Probab=99.75  E-value=2.6e-16  Score=136.73  Aligned_cols=228  Identities=16%  Similarity=0.235  Sum_probs=174.6

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPEC---ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      ..+|+|.+|++|++.+|++..+..|.||.....   +..++++.|...|++|+|.|..+     .|++|+.|..-.+|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-----rIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-----RIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-----ceeEccCCCCcccccc
Confidence            469999999999999999999999999987654   56788999999999999999998     5999999999999998


Q ss_pred             C-CCc--ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc--------ccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        229 D-KDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT--------PLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       229 ~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~--------~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      . .++  +...+..+.. .++++.|+|..+.|++|+....+.+..        ..+.+.......|+++.|+|++-+|++
T Consensus        85 ~~~~~WkptlvLlRiNr-AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINR-AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCCeeccceeEEEecc-ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            4 333  3333333443 799999999999999999988755411        112233333557999999999999999


Q ss_pred             EecCCeEEEEECC-----C-------------CcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe-eEE
Q psy11350        298 CCWDHSWRLWDLN-----Q-------------GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-CIM  358 (471)
Q Consensus       298 ~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~-~~~  358 (471)
                      |+.|+..++|..-     .             |+.+..+....+.+..+.|+|+|..|+-.+.|..+.+-|..... .+.
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence            9999999998642     1             12233333556789999999999999999999999999976654 333


Q ss_pred             EecccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        359 FLEGHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      ......-+..++.|..+. .++.++.|.
T Consensus       244 ~~~~~~lP~ls~~~ise~-~vv~ag~~c  270 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWISEN-SVVAAGYDC  270 (361)
T ss_pred             chhhccCCceeeEeecCC-ceeecCCCC
Confidence            443333678888887653 344555553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=3.4e-15  Score=141.70  Aligned_cols=236  Identities=17%  Similarity=0.208  Sum_probs=157.7

Q ss_pred             CCcCeEEEEEecCCCEEEEEe-CCCcEEEEeCC-CCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCCcEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATAS-WSGLCKLWTVP-ECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDGSVKL  225 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~-~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~i  225 (471)
                      +.+....++++|++++|++++ .++.|.+|++. +++.  +.... .......++|+|+++     .+++++ .++.|.+
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~-----~l~v~~~~~~~v~v  106 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGR-----FLFSASYNANCVSV  106 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCC-----EEEEEEcCCCeEEE
Confidence            345677889999999988765 47899999986 3433  22222 233567899999998     455554 5899999


Q ss_pred             EeCCCCc----ceeeecCCCCcceEEEEECCCCCEEEEEeCC-CeEEecccc--ccc--------cCCCCcceEEEEECC
Q psy11350        226 WSLDKDT----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HSWRLDTPL--ANL--------EGHEPFRVSRIKFHP  290 (471)
Q Consensus       226 wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~~~~~~~~--~~~--------~~~~~~~v~~l~~~~  290 (471)
                      |++++..    .+..+...  .....++++|+++++++++.. +.+.++...  ..+        ..........+.|+|
T Consensus       107 ~~~~~~g~~~~~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p  184 (330)
T PRK11028        107 SPLDKDGIPVAPIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP  184 (330)
T ss_pred             EEECCCCCCCCceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC
Confidence            9986432    22222221  246778999999998766654 554443221  111        111123467899999


Q ss_pred             CCCEEEEEec-CCeEEEEECCC--Cc--EEEEeeCC------CCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEE
Q psy11350        291 SGRFLGTCCW-DHSWRLWDLNQ--GQ--EVLHQEGH------GKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIM  358 (471)
Q Consensus       291 ~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~  358 (471)
                      +++++++++. +++|.+|++..  ++  .+..+..+      ......+.|+|++++++++.. ++.|.+|++.......
T Consensus       185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~  264 (330)
T PRK11028        185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL  264 (330)
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence            9999988876 89999999973  32  23333221      112336889999999998854 7899999986543222


Q ss_pred             EecccC---cCEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q psy11350        359 FLEGHL---KSVFSVDFSPDGYHLATGSE-DNAVKIWDLR  394 (471)
Q Consensus       359 ~~~~h~---~~v~~~~~sp~~~~l~s~s~-dg~i~iwd~~  394 (471)
                      .+.++.   .....+.|+|+|++|++++. +++|.+|+++
T Consensus       265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            222221   24568899999999998775 8999999875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=5.1e-15  Score=140.48  Aligned_cols=220  Identities=17%  Similarity=0.233  Sum_probs=144.6

Q ss_pred             EEeCCCcEEEEeCCC-Cc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEE-eCCCcEEEEeCCC-Ccc--eeeecCCC
Q psy11350        169 TASWSGLCKLWTVPE-CE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC-AQDGSVKLWSLDK-DTP--LANLEGHE  241 (471)
Q Consensus       169 tg~~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~  241 (471)
                      +...++.|.+|++.+ ++  .+..+. +.+....++++|+++     +|+++ ..++.|.+|++.. +..  .....  .
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~-----~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~   78 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR-----HLYVGVRPEFRVLSYRIADDGALTFAAESP--L   78 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC-----EEEEEECCCCcEEEEEECCCCceEEeeeec--C
Confidence            346689999999964 43  444554 345677899999988     45544 5689999999863 332  22222  1


Q ss_pred             CcceEEEEECCCCCEEEEEeC-CCeEEecccc------cccc-CCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCC
Q psy11350        242 PFRVSRIKFHPSGRFLGTCCW-DHSWRLDTPL------ANLE-GHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQG  312 (471)
Q Consensus       242 ~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~~------~~~~-~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~  312 (471)
                      ......++++|+++++++++. ++.+.++...      .... ........+++++|+++++++++ .++.|.+||+.+.
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            225678999999999988875 4443332111      0111 01112467789999999886655 5699999999864


Q ss_pred             cEEEE-----ee-CCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCC--C--eeEEEeccc------CcCEEEEEEcCC
Q psy11350        313 QEVLH-----QE-GHGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRT--G--RCIMFLEGH------LKSVFSVDFSPD  375 (471)
Q Consensus       313 ~~~~~-----~~-~~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~--~--~~~~~~~~h------~~~v~~~~~sp~  375 (471)
                      ..+..     .. ........++|+|+|++++++.. ++.|.+|++..  +  +.+..+..+      ......+.++|+
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            32211     11 12334568999999999988775 89999999973  3  233333221      112346899999


Q ss_pred             CCEEEEEeC-CCcEEEEECCCc
Q psy11350        376 GYHLATGSE-DNAVKIWDLRKR  396 (471)
Q Consensus       376 ~~~l~s~s~-dg~i~iwd~~~~  396 (471)
                      |++++++.. ++.|.+|++...
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCC
Confidence            999988854 789999999654

>KOG1009|consensus

Probab=99.74  E-value=5.9e-17  Score=144.86  Aligned_cols=175  Identities=21%  Similarity=0.387  Sum_probs=141.9

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA  273 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~  273 (471)
                      ..+|..+.|.++..+    .++||+.|..|++|-+..+..-..-        ..+                     .-..
T Consensus        13 ~~pv~s~dfq~n~~~----~laT~G~D~~iriW~v~r~~~~~~~--------~~V---------------------~y~s   59 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLN----KLATAGGDKDIRIWKVNRSEPGGGD--------MKV---------------------EYLS   59 (434)
T ss_pred             CCceEEEEeccCccc----ceecccCccceeeeeeeecCCCCCc--------eeE---------------------EEee
Confidence            467899999988765    6999999999999998765432100        000                     1112


Q ss_pred             cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC--------C--------CcEEEEeeCCCCCeEEEEEeCCCCEE
Q psy11350        274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN--------Q--------GQEVLHQEGHGKPVYCMSFQGDGSVV  337 (471)
Q Consensus       274 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~s~d~~~l  337 (471)
                      .+..| ...|+++.|+|+|..|++|+.+|.|.+|-..        +        ......+.+|...|+.++|+||+.++
T Consensus        60 ~Ls~H-~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   60 SLSRH-TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             cccCC-cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            33444 4579999999999999999999999999765        2        12334567899999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        338 ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       338 ~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      ++++.|+.+++||+..|..+..+..|...|..++|.|-++++++-+.|...+.+.+...+.++.+
T Consensus       139 ~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~  203 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH  203 (434)
T ss_pred             eeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeee
Confidence            99999999999999999999999999999999999999999999999998888888777666543

>KOG2110|consensus

Probab=99.73  E-value=3.4e-15  Score=132.29  Aligned_cols=235  Identities=20%  Similarity=0.283  Sum_probs=170.6

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC--CcEEEEeC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD--GSVKLWSL  228 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iwd~  228 (471)
                      ....+..+.|+.+...|..|+.|| .++|+................|.-+-|+..       +++..+.+  +.+++++.
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-------LvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-------LVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-------eeEEEecCCCceEEEEEc
Confidence            345677778999999999999887 467776543332222222334555555543       45555444  45899998


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--EEec--cccccccCC--CCcceEEEEECCCCCEEEEE--ec
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLD--TPLANLEGH--EPFRVSRIKFHPSGRFLGTC--CW  300 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~--~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~--~~  300 (471)
                      ..+..+..+.-..  .|.++.++.  +.++++-.+..  +++.  ..+.++...  ++..+.++.+++.+.+++.-  ..
T Consensus        76 Kk~~~ICe~~fpt--~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   76 KKKTTICEIFFPT--SILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             ccCceEEEEecCC--ceEEEEEcc--ceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            8877776655444  566666654  45666655554  2221  223333222  24457777777777788864  34


Q ss_pred             CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEeCCCCeeEEEecccC--cCEEEEEEcCCCC
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAF-GRVWDLRTGRCIMFLEGHL--KSVFSVDFSPDGY  377 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~  377 (471)
                      .|.|.+||+.+.+++..+..|.+++-+++|+++|.+|||++..|+ |||+.+.+|+.+..|+...  ..|.+++|+|++.
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ  231 (391)
T ss_pred             CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence            688999999999999999999999999999999999999999997 7999999999999987443  3588999999999


Q ss_pred             EEEEEeCCCcEEEEECCCcc
Q psy11350        378 HLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       378 ~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +|++.|..++|+||.+....
T Consensus       232 ~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  232 FLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eEEEecCCCeEEEEEecccc
Confidence            99999999999999997654

>KOG1007|consensus

Probab=99.73  E-value=2.6e-16  Score=134.77  Aligned_cols=227  Identities=21%  Similarity=0.352  Sum_probs=166.6

Q ss_pred             CEEEEEe----CCCcEEEEeCCCCc--e-EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-------CcEEEEeCCC
Q psy11350        165 QHVATAS----WSGLCKLWTVPECE--L-VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-------GSVKLWSLDK  230 (471)
Q Consensus       165 ~~l~tg~----~dg~i~iwd~~~~~--~-~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~  230 (471)
                      -.+++|.    .|+.|.+.++....  . ...|..|.+.|+.|+-+|....    +|+++..+       ..+.||.+..
T Consensus        27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~----ilaT~yn~~s~s~vl~~aaiw~ipe  102 (370)
T KOG1007|consen   27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR----ILATVYNDTSDSGVLTGAAIWQIPE  102 (370)
T ss_pred             eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc----eEEEEEeccCCCcceeeEEEEeccc
Confidence            3455555    46778877775432  2 2356678899999999998875    66666553       2478998754


Q ss_pred             C---------cceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--EEeccc---ccccc----CCCCcceEEEEECC--
Q psy11350        231 D---------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLDTP---LANLE----GHEPFRVSRIKFHP--  290 (471)
Q Consensus       231 ~---------~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~~~---~~~~~----~~~~~~v~~l~~~~--  290 (471)
                      .         +++..+....-..|.|+.|.|++..+++-.....  |.+...   ...+.    .......++-+|+|  
T Consensus       103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             ccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence            3         2344444333338999999999999988775544  333211   11111    11233577888998  


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEe-eCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCC-eeEEEecccCcCE
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQ-EGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSV  367 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v  367 (471)
                      +|+.+++.+ |+++..||+++.++...+ ..|...|..+.|+|+.+ +|++|+.||.|+|||.+.- .++..+.+|...|
T Consensus       183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV  261 (370)
T ss_pred             ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence            777777765 899999999998877665 46888999999999765 7889999999999999865 6788999999999


Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q psy11350        368 FSVDFSPD-GYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       368 ~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      .++.|+|. .+++++||.|..|.+|....-
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEecccc
Confidence            99999994 578899999999999987543

>KOG1445|consensus

Probab=99.73  E-value=1.1e-16  Score=150.48  Aligned_cols=200  Identities=24%  Similarity=0.388  Sum_probs=149.7

Q ss_pred             EecCCCEEEE--EeCCCcEEEEeCCCC-ceE----EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        160 FSPDSQHVAT--ASWSGLCKLWTVPEC-ELV----QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       160 ~s~~~~~l~t--g~~dg~i~iwd~~~~-~~~----~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      |+.+..++|+  ++..|.|-||++... +..    -.+. ....|+.+.|.|....    .|+.++.||.|++|.+..+.
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~----rLAVa~ddg~i~lWr~~a~g  661 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDE----RLAVATDDGQINLWRLTANG  661 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChH----HeeecccCceEEEEEeccCC
Confidence            4445566663  455799999998642 221    1111 2467999999998765    79999999999999987654


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecCCeEEEEECCC
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~  311 (471)
                      .-....                               ++...+..| ...|+.+.|+| -...|++++.|.+|++||+.+
T Consensus       662 l~e~~~-------------------------------tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  662 LPENEM-------------------------------TPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             CCcccC-------------------------------Ccceeeecc-cceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            322111                               233344555 44799999999 456899999999999999999


Q ss_pred             CcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe-eEEEecccC-cCEEEEEEcCCCCEEEEEeCC----
Q psy11350        312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHL-KSVFSVDFSPDGYHLATGSED----  385 (471)
Q Consensus       312 ~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~d----  385 (471)
                      ++....+.+|.+.|..++|||||+.+++.+.||+|+||..+++. +++.-.+.. ..-..|.|.-+|+++++.+.|    
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~Se  789 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSE  789 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccch
Confidence            99999999999999999999999999999999999999998774 333322221 223456777799999887766    


Q ss_pred             CcEEEEECCCc
Q psy11350        386 NAVKIWDLRKR  396 (471)
Q Consensus       386 g~i~iwd~~~~  396 (471)
                      ..|.+||..+-
T Consensus       790 RQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  790 RQVQMYDAQTL  800 (1012)
T ss_pred             hhhhhhhhhhc
Confidence            45888987754

>KOG1524|consensus

Probab=99.72  E-value=4.6e-16  Score=143.69  Aligned_cols=232  Identities=16%  Similarity=0.215  Sum_probs=170.5

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEE-ee---CCCCCCccEEEEEeCCCcEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEF-HP---LPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~---~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .|+.-|.|+.|+.+...+.+++ |..+.+|.-.+......+......|....+ -+   .+..++. .|+.++.||.+.|
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d-~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSD-TLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcc-eEEEEcCCceEEE
Confidence            4777788999998887777776 555555543332322222222222211111 11   1111122 5888999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc---CCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE---GHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      .+ ..++....+..|.. .+.+-.|+|+|.-+++++.||.+++|.....+.   .....+|.|++|.|+.+.++.+. .+
T Consensus        90 l~-k~~rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~  166 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG  166 (737)
T ss_pred             ec-ccchhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence            88 46666677777776 899999999999999999999999987644332   23355799999999887665554 46


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      .+.|=-+.....+.....|.+-|.++.|++...++++|+.|-..+|||- .|..+..-..|..+|++++|.|+ ..++.+
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeee
Confidence            6777777777778889999999999999999999999999999999995 67788888889999999999999 666666


Q ss_pred             eCCCcEE
Q psy11350        383 SEDNAVK  389 (471)
Q Consensus       383 s~dg~i~  389 (471)
                      |. ++++
T Consensus       245 S~-nt~R  250 (737)
T KOG1524|consen  245 SY-NTAR  250 (737)
T ss_pred             ee-eeee
Confidence            54 3555

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7.4e-16  Score=150.88  Aligned_cols=212  Identities=22%  Similarity=0.237  Sum_probs=150.3

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceE--EEeecCCCCEEEEEEeeCCCCCCccEEEEE-eCCC
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPECELV--QTFRGHDCNVGAIEFHPLPSEGAVCSLASC-AQDG  221 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-~~dg  221 (471)
                      +..|...+.+.+|||||++|+.++.+   ..|++||+.+++..  ..+.+|   ...++|+|++.     .|+.+ +.+|
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~-----~La~~~~~~g  270 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS-----RLAFASSKDG  270 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC-----EEEEEEecCC
Confidence            45678889999999999999987654   36999999887543  333333   44789999998     46554 5688


Q ss_pred             cEEEE--eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeC-CCeEEecc-----ccccccCCCCcceEEEEECCCCC
Q psy11350        222 SVKLW--SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       222 ~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      .+.||  |+.++.. ..+..+.. .+....|+|||+.|+.++. ++...++.     .......+ ..  ....|+|+|+
T Consensus       271 ~~~Iy~~d~~~~~~-~~lt~~~~-~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~--~~~~~SpDG~  345 (429)
T PRK01742        271 VLNIYVMGANGGTP-SQLTSGAG-NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG--YSAQISADGK  345 (429)
T ss_pred             cEEEEEEECCCCCe-EeeccCCC-CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC--CCccCCCCCC
Confidence            76665  6555543 34444433 6788999999998877664 45533321     11111122 11  4578999999


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC--CCCeeEEEecccCcCEEEEE
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL--RTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~  371 (471)
                      +|++++.++ +.+||+.+++.......+  ...++.|+|||++|+.++.++.+.+|++  .+|+.+..+.+|.+.+...+
T Consensus       346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~  422 (429)
T PRK01742        346 TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPA  422 (429)
T ss_pred             EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcc
Confidence            998888765 566999988654332222  2356789999999999999998888875  36788888888888899999


Q ss_pred             EcCC
Q psy11350        372 FSPD  375 (471)
Q Consensus       372 ~sp~  375 (471)
                      |+|-
T Consensus       423 wsp~  426 (429)
T PRK01742        423 WSPY  426 (429)
T ss_pred             cCCC
Confidence            9984

>KOG3881|consensus

Probab=99.71  E-value=1.5e-15  Score=135.51  Aligned_cols=216  Identities=19%  Similarity=0.242  Sum_probs=168.9

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC--CcEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD--GSVK  224 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~  224 (471)
                      -+.+|..++..  ...|++|..+|.+.+|..+.+.    .+..+..+ ..+..+.-++...+    ++++|+..  ..+.
T Consensus       104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~----Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY----IVATGGKENINELK  176 (412)
T ss_pred             ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc----eEecCchhccccee
Confidence            45566666553  2467888889999999987432    33334433 45667777776664    67789998  8899


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCC--CCEEEEEecCC
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDH  302 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg  302 (471)
                      |||++..+.+..-+.-..                              ..+.-..+..++++.|-+.  ...|++++.-+
T Consensus       177 iwdle~~~qiw~aKNvpn------------------------------D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h  226 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPN------------------------------DRLGLRVPVWITDIRFLEGSPNYKFATITRYH  226 (412)
T ss_pred             eeecccceeeeeccCCCC------------------------------ccccceeeeeeccceecCCCCCceEEEEecce
Confidence            999987754444332211                              1111111345788899887  78999999999


Q ss_pred             eEEEEECCCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecccCcCEEEEEEcCCCCEEE
Q psy11350        303 SWRLWDLNQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF-LEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       303 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~  380 (471)
                      .+++||.+.+ +++..+.-...+++++...|.++++++|..-|.+..||++.++.+.. +.+..+.|.++..+|.+++++
T Consensus       227 qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la  306 (412)
T KOG3881|consen  227 QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA  306 (412)
T ss_pred             eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEE
Confidence            9999999876 46777777789999999999999999999999999999999988876 889999999999999999999


Q ss_pred             EEeCCCcEEEEECCCccchheec
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +||-|..|||+|+++.+++..+.
T Consensus       307 s~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  307 SCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             eeccceeEEEeecccchhhhhhh
Confidence            99999999999999988876443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.3e-15  Score=149.14  Aligned_cols=214  Identities=15%  Similarity=0.117  Sum_probs=148.9

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---CcEEEEeCCCCcce--eeecCCCCcceEE
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---GSVKLWSLDKDTPL--ANLEGHEPFRVSR  247 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~--~~~~~~~~~~v~~  247 (471)
                      +..|++||..... ...+..|...+..+.|+|++.     .|+.++.+   ..|.+||+.+++..  ..+.+    ....
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~-----~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----~~~~  252 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS-----KLAYVSFENKKSQLVVHDLRSGARKVVASFRG----HNGA  252 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC-----EEEEEEecCCCcEEEEEeCCCCceEEEecCCC----ccCc
Confidence            4789999986544 556777888899999999998     56666543   46999999887543  22332    3346


Q ss_pred             EEECCCCCEEEEEe-CCCeEEec------cccccccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCC-cEEEEe
Q psy11350        248 IKFHPSGRFLGTCC-WDHSWRLD------TPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQG-QEVLHQ  318 (471)
Q Consensus       248 ~~~s~~~~~i~~~~-~d~~~~~~------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~  318 (471)
                      ++|+|||+.|++++ .++.++++      .....+..+ ...+....|+|+|+.|+.++ .+|...||++... .....+
T Consensus       253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC-CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            89999999888765 56654432      112233333 34577899999999877655 5678888876432 222222


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCc
Q psy11350        319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL--RKR  396 (471)
Q Consensus       319 ~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~--~~~  396 (471)
                       .+..  .+..|+|||++|+.++.++ +.+||+.+++.......+  ....+.|+|||++|++++.+|.+.+|++  .++
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G  405 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG  405 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence             3433  4678999999998887765 566999988654332222  3456789999999999999999888876  356


Q ss_pred             cchheec
Q psy11350        397 RLLKWCT  403 (471)
Q Consensus       397 ~~~~~~~  403 (471)
                      +.++.+.
T Consensus       406 ~~~~~l~  412 (429)
T PRK01742        406 RFKARLP  412 (429)
T ss_pred             CceEEcc
Confidence            6666664

>KOG2139|consensus

Probab=99.71  E-value=5.8e-15  Score=130.37  Aligned_cols=205  Identities=18%  Similarity=0.238  Sum_probs=143.3

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ..+..++|++.-..+|++..|-.|++|+-.. ++...++ .....|+|++|-|.+..    .|+.|+.. -|.+|.....
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas----elavgCr~-gIciW~~s~t  172 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS----ELAVGCRA-GICIWSDSRT  172 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc----eeeeeecc-eeEEEEcCcc
Confidence            4567789999666788999999999999765 4444444 34568999999998874    57777764 5899986432


Q ss_pred             cce-eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec-CCeEEEEEC
Q psy11350        232 TPL-ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLWDL  309 (471)
Q Consensus       232 ~~~-~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~  309 (471)
                      -.. ........                           .....+......+|++|.|++||..+++++. |..|.|||.
T Consensus       173 ln~~r~~~~~s~---------------------------~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp  225 (445)
T KOG2139|consen  173 LNANRNIRMMST---------------------------HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDP  225 (445)
T ss_pred             cccccccccccc---------------------------cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcC
Confidence            111 11111000                           1111122222347999999999999999876 467999999


Q ss_pred             CCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCCCCEEEE-EeCCCc
Q psy11350        310 NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLAT-GSEDNA  387 (471)
Q Consensus       310 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s-~s~dg~  387 (471)
                      .++..+.......+.++-+.|||||.+|+++.-|+..++|+.... .+.. .....+.|...+|+|+|++|.. ++..- 
T Consensus       226 dtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp-  303 (445)
T KOG2139|consen  226 DTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSGSP-  303 (445)
T ss_pred             CCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcCCc-
Confidence            998876655445677889999999999999999999999965433 3332 2234459999999999987654 44333 


Q ss_pred             EEEEEC
Q psy11350        388 VKIWDL  393 (471)
Q Consensus       388 i~iwd~  393 (471)
                       ++|.+
T Consensus       304 -~lysl  308 (445)
T KOG2139|consen  304 -RLYSL  308 (445)
T ss_pred             -eEEEE
Confidence             34444

>KOG1517|consensus

Probab=99.69  E-value=2.6e-15  Score=148.98  Aligned_cols=282  Identities=20%  Similarity=0.261  Sum_probs=186.9

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecC---CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH---DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      +...+-..+.|+|-...++++...-.|+|||.+.++....|..+   ...|+.+.+.....   ..++++|+.||.|+||
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D---~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQD---DALLLTASSDGVIRIW 1138 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccc---hhheeeeccCceEEEe
Confidence            34446677889999999999998889999999999988877654   35688888876543   2378999999999999


Q ss_pred             eC-CCC-cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-ccccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        227 SL-DKD-TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       227 d~-~~~-~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      +- ... +..                     .++++.        ..+ ..+.+..... .-+.|.....+|++++.-..
T Consensus      1139 k~y~~~~~~~---------------------eLVTaw--------~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1139 KDYADKWKKP---------------------ELVTAW--------SSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             cccccccCCc---------------------eeEEee--------ccccccCccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence            73 221 100                     011110        000 0111111111 45788887778888887899


Q ss_pred             EEEEECCCCcEEEEee-CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCe---eEEEecccCcC--EEEEEEcCCC
Q psy11350        304 WRLWDLNQGQEVLHQE-GHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGR---CIMFLEGHLKS--VFSVDFSPDG  376 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~h~~~--v~~~~~sp~~  376 (471)
                      |+|||....+.+..+. +....|+++.-+. .|+.+++|..||.|++||.+...   .+...+.|+..  |..+.+.++|
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            9999999877776654 3455677776544 57999999999999999998653   56677888887  9999999876


Q ss_pred             CE-EEEEeCCCcEEEEECCCccchheecccC----C---------CccceeeccccceeeeecccCCCccccc--chhhh
Q psy11350        377 YH-LATGSEDNAVKIWDLRKRRLLKWCTQLL----P---------NSIGVTSLLTDLYIDVLESLNPGIGNII--SSALK  440 (471)
Q Consensus       377 ~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~---------~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~  440 (471)
                      -- |++|+.||.|++||++.......+....    +         ....+++......+.+|...+.....+.  .+.+.
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~ 1348 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMG 1348 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCccccc
Confidence            54 9999999999999999852222111111    1         1112222233356666666554322221  11222


Q ss_pred             cccccceeeecccceeeeecCCeEEEeecC
Q psy11350        441 EQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       441 ~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      +.+      .....|+|+|---+||+.+++
T Consensus      1349 q~~------gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1349 QRI------GSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             CcC------CCcceeeecchhHhhhhccCC
Confidence            211      234788999988888877654

>KOG0290|consensus

Probab=99.69  E-value=2.1e-15  Score=129.38  Aligned_cols=199  Identities=19%  Similarity=0.281  Sum_probs=152.2

Q ss_pred             cCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCc---eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        150 GDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPECE---LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       150 gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+..++++..|+. +-++|.+++-|-++.|||++++.   ....+-.|...|..|+|...+..    .+++.+.||.+++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~----~FASvgaDGSvRm  223 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD----VFASVGADGSVRM  223 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc----eEEEecCCCcEEE
Confidence            4677999999985 45788899999999999999863   35667799999999999997765    8999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecC-Ce
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWD-HS  303 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d-g~  303 (471)
                      +|++..+.-..+-....                                    ...+...++|++ +-+++|+-..| ..
T Consensus       224 FDLR~leHSTIIYE~p~------------------------------------~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  224 FDLRSLEHSTIIYEDPS------------------------------------PSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             EEecccccceEEecCCC------------------------------------CCCcceeeccCcCCchHHhhhhcCCce
Confidence            99986643322211110                                    023577888887 45677776555 46


Q ss_pred             EEEEECCCC-cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC------eeEEEecccCcCEEEEEEcC-
Q psy11350        304 WRLWDLNQG-QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG------RCIMFLEGHLKSVFSVDFSP-  374 (471)
Q Consensus       304 i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp-  374 (471)
                      |.|.|++.. .++..+.+|.+.|+.++|.| ....|++++.|..+.+||+...      .++..+. ..+.|+.+.|+| 
T Consensus       268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSS  346 (364)
T ss_pred             EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeeccc
Confidence            999999864 56888999999999999999 5678999999999999999753      2333333 457899999997 


Q ss_pred             CCCEEEEEeCCCcEEE
Q psy11350        375 DGYHLATGSEDNAVKI  390 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~i  390 (471)
                      .+..++.+. ++++.+
T Consensus       347 ~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  347 QPDWIAICF-GKKLEI  361 (364)
T ss_pred             CCCEEEEEe-cCeeeE
Confidence            566777765 344443

>KOG2321|consensus

Probab=99.67  E-value=1.2e-14  Score=135.54  Aligned_cols=271  Identities=18%  Similarity=0.139  Sum_probs=189.7

Q ss_pred             cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc-ceEEEEECCCCCEEEEEeCCCeEEecc
Q psy11350        192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF-RVSRIKFHPSGRFLGTCCWDHSWRLDT  270 (471)
Q Consensus       192 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~i~~~~~d~~~~~~~  270 (471)
                      .|...-+.|..+|+|.+    ++++|...-.|++||+..-.  ..|..|.+. .|.-.-++.|-..++.-..|..+.+..
T Consensus        49 e~p~ast~ik~s~DGqY----~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa  122 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY----LLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA  122 (703)
T ss_pred             CCccccceeEecCCCcE----EEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence            35667789999999996    78899999999999985443  344444433 344444566666666666676666533


Q ss_pred             cccc-ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy11350        271 PLAN-LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       271 ~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iw  349 (471)
                      .... +....+..-..++++.-..-|++++....|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..|
T Consensus       123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence            2211 111112234456676544556666667789999999999998888888999999999998999999999999999


Q ss_pred             eCCCCeeEEEecc------cCc-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeecccc
Q psy11350        350 DLRTGRCIMFLEG------HLK-----SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTD  418 (471)
Q Consensus       350 d~~~~~~~~~~~~------h~~-----~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d  418 (471)
                      |.++...+.++..      |.+     .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-.+....++..+.+...
T Consensus       203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            9998766655542      333     49999999999999999999999999999999886444333333333333222


Q ss_pred             ceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEee
Q psy11350        419 LYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~  468 (471)
                      ..-..+.+.+..+..++....+..+..+....+++.+++-|++.++.+.-
T Consensus       283 ~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  283 DQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             CCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence            22223334444455555555566666677777889999999998877643

>KOG2111|consensus

Probab=99.67  E-value=2.1e-14  Score=124.94  Aligned_cols=235  Identities=15%  Similarity=0.199  Sum_probs=157.5

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC------CcEEEEe
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD------GSVKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~iwd  227 (471)
                      ...+++|+.|...+++|. +.-.+||+.+-.+....-..+.+.+.-+...-..+   + +.+.||.+      ..|.|||
T Consensus         7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N---~-laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSN---Y-LALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhc---e-EEEecCCCCCCCCCceEEEEe
Confidence            345589999999999998 45589999865333222222222221111111111   1 22333333      5699999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--EEeccccc---cccCC-CCcceEEEEECCCCCEEEE-Eec
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLDTPLA---NLEGH-EPFRVSRIKFHPSGRFLGT-CCW  300 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~~~~~---~~~~~-~~~~v~~l~~~~~~~~l~~-~~~  300 (471)
                      =....++..+.-..  +|.++.+.++.  |++......  |.+....+   .+... .+..+.+++-+.+..+||. |-.
T Consensus        82 D~k~~~i~el~f~~--~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   82 DLKERCIIELSFNS--EIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             cccCcEEEEEEecc--ceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence            66666776666544  78888887754  333333332  33321111   11111 1333555554445455555 445


Q ss_pred             CCeEEEEECCCCcE--EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEeCCCCeeEEEeccc--CcCEEEEEEcCC
Q psy11350        301 DHSWRLWDLNQGQE--VLHQEGHGKPVYCMSFQGDGSVVATGGLDAF-GRVWDLRTGRCIMFLEGH--LKSVFSVDFSPD  375 (471)
Q Consensus       301 dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~  375 (471)
                      -|.|.|-|+...+.  ...+..|...|.|++.+.+|.++||+|..|+ |||||..+|+.+..++..  ...|.+|+|||+
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            68999999987655  4778899999999999999999999999998 799999999999988742  357999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCcc
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +.+|+++|+.|+|.|+.++...
T Consensus       238 ~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeecCC
Confidence            9999999999999999997644

>KOG1523|consensus

Probab=99.66  E-value=8.1e-15  Score=127.54  Aligned_cols=201  Identities=17%  Similarity=0.189  Sum_probs=161.2

Q ss_pred             eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc---ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeE
Q psy11350        190 FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  266 (471)
Q Consensus       190 ~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~  266 (471)
                      +.....+|+|.+|+++..     .++.+.....|.||.....+   ..+++..|.. .|+.+.|+|..+.|++|+.|..-
T Consensus         6 ~~~~~~pitchAwn~drt-----~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drna   79 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRT-----QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRNA   79 (361)
T ss_pred             eeeccCceeeeeecCCCc-----eEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeecCCCCceeEccCCCCc
Confidence            333467899999999998     69999999999999986654   5667777777 89999999999999999999874


Q ss_pred             Eec--------cccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEE----EEeeCCCCCeEEEEEeCCC
Q psy11350        267 RLD--------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV----LHQEGHGKPVYCMSFQGDG  334 (471)
Q Consensus       267 ~~~--------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~d~  334 (471)
                      .++        .+...+..+ ....+++.|+|.++.|++|+....|.||-++...--    +.-..+...|++++|+|++
T Consensus        80 yVw~~~~~~~WkptlvLlRi-NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTLVLLRI-NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             cccccCCCCeeccceeEEEe-ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence            443        333344444 446899999999999999999999999998765422    1224567789999999999


Q ss_pred             CEEEEEeCCCeEEEEeCC------------------CCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        335 SVVATGGLDAFGRVWDLR------------------TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       335 ~~l~t~~~dg~i~iwd~~------------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      -+|++|+.|+..+|+..-                  -|+.+..+....+.|..+.|+|+|..|+-.+.|+++.+=|....
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            999999999999998531                  12333444445678999999999999999999999999998766


Q ss_pred             c
Q psy11350        397 R  397 (471)
Q Consensus       397 ~  397 (471)
                      .
T Consensus       239 ~  239 (361)
T KOG1523|consen  239 S  239 (361)
T ss_pred             c
Confidence            4

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.1e-14  Score=139.13  Aligned_cols=214  Identities=14%  Similarity=0.113  Sum_probs=147.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--cEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASW---SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--SVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~  224 (471)
                      .+...+.+.+|||||+.|+..+.   +..|++|++.+++.... ....+.+..+.|+|++..    ++++.+.+|  .|.
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~----La~~~~~~g~~~I~  270 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK----LAFALSKTGSLNLY  270 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE----EEEEEcCCCCcEEE
Confidence            45668899999999999986542   35799999988764432 223344557899999983    333445555  488


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC-eEEec-----c-ccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-SWRLD-----T-PLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~-~~~~~-----~-~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      +||+.++........ . ..+....|+|||+.|+..+..+ ...++     . ....+... ........|+|+|++|+.
T Consensus       271 ~~d~~tg~~~~lt~~-~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        271 VMDLASGQIRQVTDG-R-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVM  347 (429)
T ss_pred             EEECCCCCEEEccCC-C-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEE
Confidence            899987765443333 2 2577899999999998877653 32221     1 11222222 223567899999999887


Q ss_pred             EecC---CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe---EEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        298 CCWD---HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAF---GRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       298 ~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      .+.+   ..|.+||+.+++.. .+... .......|+|||++|+.++.++.   +.++++ +|.....+.+|.+.+...+
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~  424 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPA  424 (429)
T ss_pred             EEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcc
Confidence            6654   35889999887643 33321 22346789999999999887764   677787 5666667778888899999


Q ss_pred             EcC
Q psy11350        372 FSP  374 (471)
Q Consensus       372 ~sp  374 (471)
                      |+|
T Consensus       425 Wsp  427 (429)
T PRK03629        425 WSP  427 (429)
T ss_pred             cCC
Confidence            987

>KOG1334|consensus

Probab=99.66  E-value=1.2e-15  Score=139.50  Aligned_cols=254  Identities=21%  Similarity=0.278  Sum_probs=190.3

Q ss_pred             ccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe----------------------------
Q psy11350        139 LTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF----------------------------  190 (471)
Q Consensus       139 ~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~----------------------------  190 (471)
                      ...+.++..+.+|.+.|..+.|+..|..|++|+.|..|.+||...++....+                            
T Consensus       129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence            3445566677799999999999999999999999999999998654433222                            


Q ss_pred             --------------------ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec---CCCC--cce
Q psy11350        191 --------------------RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE---GHEP--FRV  245 (471)
Q Consensus       191 --------------------~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~--~~v  245 (471)
                                          ..|.++|..++.-|....    .|.+++.|+.+.-.|+.++.+...+.   .+..  ...
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~----~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK----PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCC----cccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence                                246677777777777664    68889999999988888776544432   1222  256


Q ss_pred             EEEEECCCCC-EEEEEeCCCeEEeccc-----------cc-----cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        246 SRIKFHPSGR-FLGTCCWDHSWRLDTP-----------LA-----NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       246 ~~~~~s~~~~-~i~~~~~d~~~~~~~~-----------~~-----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      ..++..|... .+++++.|...++...           +.     .+....+..|++++|+.++.-|+++..|-.|+++.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            7888999776 7788887766444211           11     11123345699999999888888888899999995


Q ss_pred             CCC--C----------cEEEE-eeCCCC--CeEEEEE-eCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        309 LNQ--G----------QEVLH-QEGHGK--PVYCMSF-QGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       309 ~~~--~----------~~~~~-~~~~~~--~v~~~~~-s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      -.-  |          ..+.. +++|..  .|..+-| -|...++++|+.-|.|.||+-.+++.+..+.+...-|+||.-
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp  444 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP  444 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCC
Confidence            332  2          12222 667753  4666665 567889999999999999999999999988887779999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +|--..||++|-|..|+||--.+.
T Consensus       445 HP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  445 HPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCCchhhccCCccceeeecCCcc
Confidence            999899999999999999987443

>KOG1354|consensus

Probab=99.65  E-value=8.9e-15  Score=128.40  Aligned_cols=243  Identities=15%  Similarity=0.200  Sum_probs=168.6

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----eEEEeecCC------------CCEEEEEEeeCCCCCCccE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-----LVQTFRGHD------------CNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~~~~~~~  213 (471)
                      ...-|+++.|...|.+||||..+|.|.++.-....     ....++.|.            ..|..+.|.+.++.   ..
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~---a~  100 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL---AE  100 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc---cE
Confidence            45678999999999999999999999999754322     233444443            56889999988752   25


Q ss_pred             EEEEeCCCcEEEEeCCCCc-----------------------------------ceeeecCCCCcceEEEEECCCCCEEE
Q psy11350        214 LASCAQDGSVKLWSLDKDT-----------------------------------PLANLEGHEPFRVSRIKFHPSGRFLG  258 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~-----------------------------------~~~~~~~~~~~~v~~~~~s~~~~~i~  258 (471)
                      ++..+.|.+|++|.+....                                   +.+.+...+...|.++.++.|+..++
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            6777889999999875321                                   11122222334788999999999888


Q ss_pred             EEeCCCeEEeccccc---c-----ccCC----CCcceEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEE----Ee---
Q psy11350        259 TCCWDHSWRLDTPLA---N-----LEGH----EPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEVL----HQ---  318 (471)
Q Consensus       259 ~~~~d~~~~~~~~~~---~-----~~~~----~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~----~~---  318 (471)
                      ++..-. +.+|.+..   .     +..+    ...-|++..|+| ..+.|+.++..|+|++.|++......    .+   
T Consensus       181 SADdLR-INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 SADDLR-INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ecccee-eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            765432 33332211   0     1111    012478889999 45688889999999999998542211    11   


Q ss_pred             ---------eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC-CCCeeEEEecccCc------------C---EEEEEEc
Q psy11350        319 ---------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL-RTGRCIMFLEGHLK------------S---VFSVDFS  373 (471)
Q Consensus       319 ---------~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~-~~~~~~~~~~~h~~------------~---v~~~~~s  373 (471)
                               ..--..|..+.|+++|+++++-+. -+|++||+ ...+++.+++-|..            .   -..++|+
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence                     111245788999999999998653 57999999 45677777776642            2   3467899


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        374 PDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       374 p~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      .++.+++||+..+.++++++..|..
T Consensus       339 g~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             CCcceEecccccceEEEecCCCCcc
Confidence            9999999999999999999776643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=1.9e-14  Score=124.17  Aligned_cols=150  Identities=27%  Similarity=0.512  Sum_probs=112.5

Q ss_pred             EEEEECCCCCEEEEEeC---CCe----------EEe---ccccccccCCCCcceEEEEECCCCCEEEEE--ecCCeEEEE
Q psy11350        246 SRIKFHPSGRFLGTCCW---DHS----------WRL---DTPLANLEGHEPFRVSRIKFHPSGRFLGTC--CWDHSWRLW  307 (471)
Q Consensus       246 ~~~~~s~~~~~i~~~~~---d~~----------~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~iw  307 (471)
                      ..+.|+|+|.+|++-..   |.+          +.+   ..+...+.....++|.+++|+|+|+.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988776544   111          222   223333444334569999999999987654  456799999


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       308 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      |++ ++.+..+.  ...++.+.|+|+|++|++++.+   |.|.+||+++.+.+.... | ..++.++|+|+|++|++++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            997 56666654  5678899999999999998754   669999999998887765 3 35789999999999999874


Q ss_pred             ------CCcEEEEECCCccchhe
Q psy11350        385 ------DNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       385 ------dg~i~iwd~~~~~~~~~  401 (471)
                            |+.++||++. |+.+..
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEe
Confidence                  7889999985 666553

>KOG1517|consensus

Probab=99.65  E-value=1.4e-14  Score=143.95  Aligned_cols=240  Identities=20%  Similarity=0.302  Sum_probs=175.6

Q ss_pred             CCcCeEEEEEec--CCCEEEEEeCCCcEEEEeCC-----CCceEEEeec-------CCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        151 DTRPISYCSFSP--DSQHVATASWSGLCKLWTVP-----ECELVQTFRG-------HDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       151 h~~~V~~~~~s~--~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      -...|+.+.+-.  |..+|++|+.||.|+||+--     +.+.+..+.+       ..+.=.-+.|.....     .|++
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-----~Ll~ 1182 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-----HLLV 1182 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-----eEEe
Confidence            345788888764  45679999999999999742     2233333221       111113466766665     4666


Q ss_pred             EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEecc--------ccccccCCCC-cceEEE
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDT--------PLANLEGHEP-FRVSRI  286 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~--------~~~~~~~~~~-~~v~~l  286 (471)
                      +|.-..|+|||.+....+..+.......++++.-+. .|+.|++|..||.+++..        .+.....|.. .+|..+
T Consensus      1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred             cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence            666899999999999988888877777788876544 469999999999988742        3344445522 138899


Q ss_pred             EECCCCC-EEEEEecCCeEEEEECCCCcE--EEEeeCC---CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        287 KFHPSGR-FLGTCCWDHSWRLWDLNQGQE--VLHQEGH---GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       287 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      .+.+.|- .|++|+.+|.|++||++....  ...+..|   ++.++++..+++...+|+|+. +.|+||++. |+.+..+
T Consensus      1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~ 1340 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNII 1340 (1387)
T ss_pred             EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccc
Confidence            9998765 599999999999999997422  2222223   235999999999999999988 999999974 4444444


Q ss_pred             cc-------cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        361 EG-------HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       361 ~~-------h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +.       ..+.+.|++|+|..-++|+|+.|.+|.||...+.+
T Consensus      1341 k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            32       23568999999998999999999999999887654

>KOG2110|consensus

Probab=99.64  E-value=1.9e-13  Score=121.39  Aligned_cols=197  Identities=15%  Similarity=0.206  Sum_probs=145.1

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec---CCCCEEEEEEeeCCCCCCccEEEE--EeCCCcEEEE
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG---HDCNVGAIEFHPLPSEGAVCSLAS--CAQDGSVKLW  226 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~l~s--~~~dg~i~iw  226 (471)
                      ..+|.++.++.  ++|+++-.+ .|+|||+.+.+.++++..   +...+.++++++.+.     +++-  ....|.|.||
T Consensus        87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~-----ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC-----YLAYPGSTTSGDVVLF  158 (391)
T ss_pred             CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCc-----eEEecCCCCCceEEEE
Confidence            45788888865  677777744 599999999999988764   334455555555544     4553  3346999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCe-EE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WR  305 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~  305 (471)
                      |+.+-+++..+..|.+                                       .+.+++|+++|.+||+++..|+ ||
T Consensus       159 d~~nl~~v~~I~aH~~---------------------------------------~lAalafs~~G~llATASeKGTVIR  199 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKG---------------------------------------PLAALAFSPDGTLLATASEKGTVIR  199 (391)
T ss_pred             EcccceeeeEEEecCC---------------------------------------ceeEEEECCCCCEEEEeccCceEEE
Confidence            9988888777776654                                       6999999999999999999998 79


Q ss_pred             EEECCCCcEEEEeeCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee---------------------------
Q psy11350        306 LWDLNQGQEVLHQEGHG--KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC---------------------------  356 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~---------------------------  356 (471)
                      ||.+.+|+.+..+....  ..|.+++|+|++.+|++.+..++|+||.+.....                           
T Consensus       200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~  279 (391)
T KOG2110|consen  200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQ  279 (391)
T ss_pred             EEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchh
Confidence            99999999998886433  4578999999999999999999999998763210                           


Q ss_pred             ----------EEEecccCc---CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        357 ----------IMFLEGHLK---SVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       357 ----------~~~~~~h~~---~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                                ..+......   .+..+.-.+...++..++.||.++.|.+.-
T Consensus       280 V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  280 VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                      000000111   222222224678888999999999998864

>KOG1188|consensus

Probab=99.63  E-value=1.6e-14  Score=126.76  Aligned_cols=241  Identities=19%  Similarity=0.259  Sum_probs=165.5

Q ss_pred             eeeecCCcCeEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceEE--EeecCC-CCEEEEEEeeCCCCCCccEEEEEe--
Q psy11350        146 CSQVGDTRPISYCSFSP--DSQHVATASWSGLCKLWTVPECELVQ--TFRGHD-CNVGAIEFHPLPSEGAVCSLASCA--  218 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~--  218 (471)
                      ..+.+|...++.++|..  ....+.+|+.||+|++||++......  .+..+. .+..+++......     +++.|+  
T Consensus        64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~-----ii~~GtE~  138 (376)
T KOG1188|consen   64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN-----IIACGTEL  138 (376)
T ss_pred             heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC-----eEEecccc
Confidence            34567888888889887  45678899999999999998754443  334444 3555666654554     566554  


Q ss_pred             --CCCcEEEEeCCCCcc-eeeecCCCCcceEEEEECCCC-CEEEEEeCCCeEEeccccc--------cccCCCCcceEEE
Q psy11350        219 --QDGSVKLWSLDKDTP-LANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLDTPLA--------NLEGHEPFRVSRI  286 (471)
Q Consensus       219 --~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~~~~~--------~~~~~~~~~v~~l  286 (471)
                        .+-.|.+||++..+. +..+...+...|+++.|+|.. +.+++|+.||.+.+.....        ....+ ...|.++
T Consensus       139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~-~sSI~~i  217 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH-GSSIHLI  217 (376)
T ss_pred             ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc-cceeeee
Confidence              356799999988766 666554444499999999975 5889999999977743221        12222 4469999


Q ss_pred             EECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeCC------------CCCeEEEEEeC-CCCEEEEEeC-CCeEEEEeC
Q psy11350        287 KFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGH------------GKPVYCMSFQG-DGSVVATGGL-DAFGRVWDL  351 (471)
Q Consensus       287 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~-d~~~l~t~~~-dg~i~iwd~  351 (471)
                      .|..++ +.|.+-+...+..+|+++.+.+...+...            ...+-.. .+| ++..++.++. -|...++-+
T Consensus       218 gw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~  296 (376)
T KOG1188|consen  218 GWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPL  296 (376)
T ss_pred             eeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEe
Confidence            999876 45888888999999999988755443321            0111111 123 4445555544 455555533


Q ss_pred             C---C---CeeEEEecc-cCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        352 R---T---GRCIMFLEG-HLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       352 ~---~---~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      .   +   .+.+..+.+ |..-|.++.|...+..++|||.||.+.+|..
T Consensus       297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            3   2   345556666 6677889999888899999999999999985

>KOG0771|consensus

Probab=99.63  E-value=4.6e-15  Score=133.75  Aligned_cols=166  Identities=23%  Similarity=0.350  Sum_probs=122.3

Q ss_pred             EEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccC
Q psy11350        198 GAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEG  277 (471)
Q Consensus       198 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~  277 (471)
                      .+++|++++.     .+++|+.||+++||+..+...+.....|+.                                   
T Consensus       148 k~vaf~~~gs-----~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-----------------------------------  187 (398)
T KOG0771|consen  148 KVVAFNGDGS-----KLATGGTDGTLRVWEWPSMLTILEEIAHHA-----------------------------------  187 (398)
T ss_pred             eEEEEcCCCC-----EeeeccccceEEEEecCcchhhhhhHhhcC-----------------------------------
Confidence            6788888887     689999999999999766655554444432                                   


Q ss_pred             CCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC--CCCCeEEEEEeCCC---C--EEEEEeCCCeEEEEe
Q psy11350        278 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQGDG---S--VVATGGLDAFGRVWD  350 (471)
Q Consensus       278 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~d~---~--~l~t~~~dg~i~iwd  350 (471)
                          .|.++.|+|||++|++.+.| ..+||+.+++..+.....  .......+.|+.|+   .  +++.-..-+.|+.||
T Consensus       188 ----eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  188 ----EVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             ----ccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence                69999999999999999999 899999999976665543  23345677888776   2  233333455677766


Q ss_pred             CCCCee-----EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCC
Q psy11350        351 LRTGRC-----IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPN  408 (471)
Q Consensus       351 ~~~~~~-----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  408 (471)
                      +...+.     ..+...-...|++++.+++|++++.|+.||.|.|++..+-+.++.++..+..
T Consensus       263 ~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~  325 (398)
T KOG0771|consen  263 ISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG  325 (398)
T ss_pred             eeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhee
Confidence            543221     1112223358999999999999999999999999999998888876655544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=3.2e-13  Score=128.23  Aligned_cols=287  Identities=16%  Similarity=0.116  Sum_probs=177.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL  234 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  234 (471)
                      -..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++++++..    +++++..++.+.++|.++.+.+
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~----~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKY----VYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTE----EEEEEEETTEEEEEETTT--EE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCE----EEEEecCCCceeEeccccccce
Confidence            3457799999999999999999999999999999998644 4568999999983    3445557899999999999988


Q ss_pred             eeecCC------CCcceEEEEECCCCCEEEEEeCC-Ce-EEec--cc--cccccCCCCcceEEEEECCCCCEEEEE-ecC
Q psy11350        235 ANLEGH------EPFRVSRIKFHPSGRFLGTCCWD-HS-WRLD--TP--LANLEGHEPFRVSRIKFHPSGRFLGTC-CWD  301 (471)
Q Consensus       235 ~~~~~~------~~~~v~~~~~s~~~~~i~~~~~d-~~-~~~~--~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d  301 (471)
                      ..+...      ....+..+..+|....+++.-.+ +. |.+.  ..  ................|+|++++++++ ..+
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence            877643      22367888889999866666554 33 4332  11  111111112346788999999987765 456


Q ss_pred             CeEEEEECCCCcEEEEee----CCCCCeEEEE-------Ee--CCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE
Q psy11350        302 HSWRLWDLNQGQEVLHQE----GHGKPVYCMS-------FQ--GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF  368 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~----~~~~~v~~~~-------~s--~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  368 (471)
                      +.|-++|..+++.+..+.    .|..++..+-       |.  ..+...++.-....+.+||..+.+.+.++....++ .
T Consensus       194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l  272 (369)
T PF02239_consen  194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L  272 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred             ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence            789999999987766543    2334443321       21  12222222222345667899999999999877666 8


Q ss_pred             EEEEcCCCCEEEEE----eCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCC-cccccchhhhccc
Q psy11350        369 SVDFSPDGYHLATG----SEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPG-IGNIISSALKEQV  443 (471)
Q Consensus       369 ~~~~sp~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~  443 (471)
                      -+..+|+++++.+.    ...++|.++|.++.+.+.++...........-+..|+....+..++.+ ...++........
T Consensus       273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            88899999999988    455899999999998877775444434556666677766666666655 4555555554444


Q ss_pred             ccce
Q psy11350        444 EPIP  447 (471)
Q Consensus       444 ~~~~  447 (471)
                      ..++
T Consensus       353 ~~i~  356 (369)
T PF02239_consen  353 KRIP  356 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.9e-13  Score=133.10  Aligned_cols=203  Identities=14%  Similarity=0.044  Sum_probs=139.0

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc--
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASW---SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS--  222 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--  222 (471)
                      +..|...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+|++..    ++++.+.++.  
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~----la~~~~~~g~~~  271 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK----VVMSLSQGGNTD  271 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE----EEEEEecCCCce
Confidence            4467889999999999999987763   468999999887654 44556677889999999984    4456666665  


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec-C
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-D  301 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d  301 (471)
                      |.+||+.++... .+..+.                                       .......|+|+|+.|+..+. +
T Consensus       272 Iy~~d~~~~~~~-~Lt~~~---------------------------------------~~~~~~~~spDG~~i~f~s~~~  311 (435)
T PRK05137        272 IYTMDLRSGTTT-RLTDSP---------------------------------------AIDTSPSYSPDGSQIVFESDRS  311 (435)
T ss_pred             EEEEECCCCceE-EccCCC---------------------------------------CccCceeEcCCCCEEEEEECCC
Confidence            666687666432 222111                                       12445678888887776653 2


Q ss_pred             --CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        302 --HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       302 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                        ..|++||+..++. ..+..+...+....|+|||+.|+..+.+   ..|.+||+..+.. ..+. ....+..+.|+|||
T Consensus       312 g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG  388 (435)
T PRK05137        312 GSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNG  388 (435)
T ss_pred             CCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCC
Confidence              3688889876654 3343345556778999999998877643   3688899865543 3333 22357788999999


Q ss_pred             CEEEEEeCC------CcEEEEECCCccc
Q psy11350        377 YHLATGSED------NAVKIWDLRKRRL  398 (471)
Q Consensus       377 ~~l~s~s~d------g~i~iwd~~~~~~  398 (471)
                      +.|+..+.+      ..|.++|+..+..
T Consensus       389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CEEEEEEccCCCCCcceEEEEECCCCce
Confidence            988765543      2577778765543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.3e-13  Score=134.80  Aligned_cols=216  Identities=16%  Similarity=0.147  Sum_probs=145.5

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+...+.+.+|||||+.|+..+..   ..|++||+.+++... +....+.+.+..|+|++..    ++++.+.+|...|
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~----la~~~~~~g~~~I  266 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT----LAVALSRDGNSQI  266 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE----EEEEEccCCCceE
Confidence            4577889999999999999877643   359999999887643 3334456678999999983    3446778888777


Q ss_pred             EeC--CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-Ce---EEec--c-ccccccCCCCcceEEEEECCCCCEEE
Q psy11350        226 WSL--DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HS---WRLD--T-PLANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       226 wd~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~---~~~~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      |.+  .++. ...+..+.. ......|+|||+.++..+.. +.   +.+.  . ....+... ........|+|+|++|+
T Consensus       267 y~~d~~~~~-~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        267 YTVNADGSG-LRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLA  343 (427)
T ss_pred             EEEECCCCC-cEECCCCCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEE
Confidence            754  3343 344443332 45678899999998877653 33   2221  1 11111111 12244678999999998


Q ss_pred             EEecCC---eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        297 TCCWDH---SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA---FGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       297 ~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                      ..+.++   .|.+||+.+++... +..+ .......|+|||+.|+.++.++   .+++.++ ++.....+..+.+.+...
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p  420 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREP  420 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCC
Confidence            877654   69999998876543 3222 2346789999999888876544   3666666 465566666677778888


Q ss_pred             EEcCC
Q psy11350        371 DFSPD  375 (471)
Q Consensus       371 ~~sp~  375 (471)
                      +|+|-
T Consensus       421 ~wsp~  425 (427)
T PRK02889        421 SWGPF  425 (427)
T ss_pred             ccCCC
Confidence            99874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.4e-13  Score=135.18  Aligned_cols=216  Identities=18%  Similarity=0.149  Sum_probs=146.3

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--c
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--S  222 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~  222 (471)
                      +..|...+.+.+|+|||+.|+..+..   ..|++||+.+++... +..+.+...++.|+|++..    ++++.+.+|  .
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~----l~~~~s~~g~~~  273 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR----LALTLSRDGNPE  273 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE----EEEEEeCCCCce
Confidence            34567789999999999999987743   469999998876543 3334455568899999984    445556665  5


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-Ce---EEec--cc-cccccCCCCcceEEEEECCCCCEE
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HS---WRLD--TP-LANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~---~~~~--~~-~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      |.+||+.+++.. .+..+.. ......|+|||+.++.++.. +.   +.+.  .. ...+... .......+|+|+|++|
T Consensus       274 Iy~~d~~~g~~~-~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        274 IYVMDLGSRQLT-RLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKI  350 (433)
T ss_pred             EEEEECCCCCeE-ECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEE
Confidence            999999877643 3333322 45678999999999887753 33   2221  11 1112212 2234568999999999


Q ss_pred             EEEecCC---eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCcCEEE
Q psy11350        296 GTCCWDH---SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLKSVFS  369 (471)
Q Consensus       296 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~  369 (471)
                      +..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   +.|+++++. +.....+..+.+.+..
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~  427 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVRE  427 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCC
Confidence            8776443   6999999887654 333 22244567999999988776653   458888884 4455566656677888


Q ss_pred             EEEcC
Q psy11350        370 VDFSP  374 (471)
Q Consensus       370 ~~~sp  374 (471)
                      .+|+|
T Consensus       428 p~wsp  432 (433)
T PRK04922        428 PAWSP  432 (433)
T ss_pred             CccCC
Confidence            88887

>KOG2321|consensus

Probab=99.60  E-value=3.2e-13  Score=126.26  Aligned_cols=245  Identities=18%  Similarity=0.232  Sum_probs=167.3

Q ss_pred             cCCcCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceEEEeecC-CCCEEEEE-EeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        150 GDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVPECELVQTFRGH-DCNVGAIE-FHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~-~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      +|...-+.+..+|||+|+ |+|.+--.|++||+....+.  |.-| ...+..+. .+.+-.     .++.-..|.+|.+.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~S-----K~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYS-----KSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchh-----hheEeecCceeeeh
Confidence            577888899999999985 67888899999999765433  2223 22332332 222222     35555667777765


Q ss_pred             eCCCCcceeeecCCCCcceEEEEEC-CCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFH-PSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      .. -|. -..+..+.  .-.+++++ |...+++.|+....+++.-.    +..+... ...++++..++-..+|++|+.+
T Consensus       122 ak-~G~-hy~~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~-~~~lN~v~in~~hgLla~Gt~~  196 (703)
T KOG2321|consen  122 AK-YGR-HYRTRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD-SGELNVVSINEEHGLLACGTED  196 (703)
T ss_pred             hh-cCe-eeeeecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccc-cccceeeeecCccceEEecccC
Confidence            42 221 11111111  23445554 45566677776666666322    2233333 3579999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEee------CCCC-----CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQE------GHGK-----PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFS  369 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~------~~~~-----~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~  369 (471)
                      |.|-.||.+....+..+.      .|.+     .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~  276 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK  276 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence            999999999876655542      2333     39999999999999999999999999999998876543 23357899


Q ss_pred             EEEcCC--CCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        370 VDFSPD--GYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       370 ~~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      +.|.+.  +..++|. +...++|||-.+|++...+.....
T Consensus       277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~  315 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD  315 (703)
T ss_pred             ecccccCCCceEEec-chHHhhhcccccCCceeeccccCC
Confidence            999875  4556554 556899999999999887654433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=2.6e-13  Score=117.16  Aligned_cols=156  Identities=17%  Similarity=0.303  Sum_probs=109.9

Q ss_pred             EEEEEecCCCEEEEEeC----------CCcEEEEeCCC-CceEEEeec-CCCCEEEEEEeeCCCCCCccE-EEEEeCCCc
Q psy11350        156 SYCSFSPDSQHVATASW----------SGLCKLWTVPE-CELVQTFRG-HDCNVGAIEFHPLPSEGAVCS-LASCAQDGS  222 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~----------dg~i~iwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~-l~s~~~dg~  222 (471)
                      ..+.|+|+|++|+.-..          -|...||.+.. ......+.. ..++|.+++|+|++..    + ++.|..++.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~----favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNE----FAVIYGSMPAK   84 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCE----EEEEEccCCcc
Confidence            35789999998775432          23455555522 233444432 3457999999999883    2 233556789


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC-
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-  301 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-  301 (471)
                      |.+||++ ++.+..+.                                         ...+..+.|+|+|++|++++.+ 
T Consensus        85 v~lyd~~-~~~i~~~~-----------------------------------------~~~~n~i~wsP~G~~l~~~g~~n  122 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSFG-----------------------------------------TQPRNTISWSPDGRFLVLAGFGN  122 (194)
T ss_pred             cEEEcCc-ccEeEeec-----------------------------------------CCCceEEEECCCCCEEEEEEccC
Confidence            9999995 44444443                                         1246789999999999988754 


Q ss_pred             --CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCeeEEEe
Q psy11350        302 --HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL------DAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       302 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~------dg~i~iwd~~~~~~~~~~  360 (471)
                        |.|.+||+++.+.+.... | ..++.++|+|||++|+++..      |+.++||+. .|+.+...
T Consensus       123 ~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  123 LNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             CCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence              679999999888776654 3 34789999999999999874      778999997 56666543

>KOG2394|consensus

Probab=99.60  E-value=5e-14  Score=130.53  Aligned_cols=251  Identities=16%  Similarity=0.179  Sum_probs=152.4

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce----E--EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECEL----V--QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~----~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .+....++-.|++|+..- ...+++|+...+..    +  ..+++  ....|-+|+........+-++.|-.-|.|.+.|
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence            344555566677776654 45788888764321    1  11222  122344443222111112377777889999998


Q ss_pred             CCCCcceeeec---CCCCcceEEEEECCCCC-EEEEEeCCCeEEeccccccccCCCCcceEE--EEECCCCCEEEEEecC
Q psy11350        228 LDKDTPLANLE---GHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPLANLEGHEPFRVSR--IKFHPSGRFLGTCCWD  301 (471)
Q Consensus       228 ~~~~~~~~~~~---~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~~l~~~~~d  301 (471)
                      ....+..+.+.   ......++++.|-|.+. .++++..+|...+.....      ....+.  ....+++..|.....-
T Consensus       202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeee
Confidence            76532222121   11223677777777554 333444444433322210      111111  1122344444333211


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      +.      .+..++..+.--.+.|+.++|+|||++||+.+.||.++|||..+.+.+..++..-+...|++|||||+||++
T Consensus       276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT  349 (636)
T ss_pred             cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence            10      111344444444568999999999999999999999999999999888888777789999999999999999


Q ss_pred             EeCCCcEEEEECCCccchheecccCCCccceeeccccceee
Q psy11350        382 GSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYID  422 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  422 (471)
                      |+.|..|.||.+..++.+.+-..+..   .+..+.+|.+..
T Consensus       350 GGEDDLVtVwSf~erRVVARGqGHkS---WVs~VaFDpytt  387 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEERRVVARGQGHKS---WVSVVAFDPYTT  387 (636)
T ss_pred             cCCcceEEEEEeccceEEEecccccc---ceeeEeeccccc
Confidence            99999999999999999887665443   555566665443

>KOG1538|consensus

Probab=99.59  E-value=1.6e-13  Score=130.13  Aligned_cols=202  Identities=13%  Similarity=0.201  Sum_probs=153.5

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-C-------ceEEEe--e----------------------
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE-C-------ELVQTF--R----------------------  191 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-~-------~~~~~~--~----------------------  191 (471)
                      +...++||...|.|++|+.||+++|+|+.|..|.+|+..- |       ..++..  .                      
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            3456789999999999999999999999999999998531 1       111110  0                      


Q ss_pred             -----cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee--cCCCCcceEEEEECCCC-----CEEEE
Q psy11350        192 -----GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL--EGHEPFRVSRIKFHPSG-----RFLGT  259 (471)
Q Consensus       192 -----~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~-----~~i~~  259 (471)
                           .....|.+.+|..+|.     +++.|-.+|+|.|-+- +++....+  ++....+|++++|+|..     ..+++
T Consensus       125 ~V~K~kss~R~~~CsWtnDGq-----ylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQ-----YLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCc-----EEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence                 0124566777777777     7999999999999875 44433333  34455699999999974     46777


Q ss_pred             EeCCCeEEeccccccccCC---CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCE
Q psy11350        260 CCWDHSWRLDTPLANLEGH---EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSV  336 (471)
Q Consensus       260 ~~~d~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  336 (471)
                      .....++.+.+....+.+.   ......|+.+.++|.+++.|+.|+.+++|. +.|-.+.++-.....|..++..|+++.
T Consensus       199 ~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCce
Confidence            7777776665544443332   234578999999999999999999999997 456666666667889999999999999


Q ss_pred             EEEEeCCCeEEEEeCC
Q psy11350        337 VATGGLDAFGRVWDLR  352 (471)
Q Consensus       337 l~t~~~dg~i~iwd~~  352 (471)
                      ++.|+.||+|..|++-
T Consensus       278 v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  278 VVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEEEccCeeehhhhH
Confidence            9999999999999764

>KOG0644|consensus

Probab=99.59  E-value=2.2e-15  Score=145.98  Aligned_cols=207  Identities=24%  Similarity=0.372  Sum_probs=162.1

Q ss_pred             eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       186 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                      .++.+.+|...|.|+.|...+.     ++++|+.|..++||.++++.++....+|.. .++.++.+.++.++++++.|..
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~-----~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGR-----YIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccc-----eEeecCccceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCce
Confidence            3445678999999999999998     799999999999999999999999999998 9999999999999999999998


Q ss_pred             EEecc-----ccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc--------------EEEEe--------
Q psy11350        266 WRLDT-----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ--------------EVLHQ--------  318 (471)
Q Consensus       266 ~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~--------  318 (471)
                      +++|.     ++..+.+| .+.|++++|+|-.    +.+.||++++||.+-.-              .+..+        
T Consensus       256 IrvWrl~~~~pvsvLrgh-tgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             EEEEecCCCchHHHHhcc-ccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence            77753     46678888 6689999999954    77889999999987110              00000        


Q ss_pred             --eC------CCCCeEEEEEeCCC-----------CEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC-CCCE
Q psy11350        319 --EG------HGKPVYCMSFQGDG-----------SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP-DGYH  378 (471)
Q Consensus       319 --~~------~~~~v~~~~~s~d~-----------~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~  378 (471)
                        .+      ......+++|....           .+.+++-.+-.+.+|++.+|...+.+.+|...+..+.++| +.+.
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence              00      00011122222222           2334444556688999999999999999999999999999 5566


Q ss_pred             EEEEeCCCcEEEEECCCccchheec
Q psy11350        379 LATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ..+++.||...|||+-.|-+++...
T Consensus       411 ~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             hhhccCCCceEeeecccCCcceeee
Confidence            7799999999999999998887554

>KOG1272|consensus

Probab=99.59  E-value=1.3e-15  Score=138.45  Aligned_cols=189  Identities=21%  Similarity=0.314  Sum_probs=156.8

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .|..+.|-.+.+++|++- ...++||| ..|..++.++.| ..|..+.|.|.--     +|++++..|.++.-|+.+|+.
T Consensus       172 tv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHf-----LL~~~~~~G~L~Y~DVS~Gkl  243 (545)
T KOG1272|consen  172 TVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHF-----LLVAASEAGFLKYQDVSTGKL  243 (545)
T ss_pred             hhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-Cchhhhcccchhh-----eeeecccCCceEEEeechhhh
Confidence            455566666667777775 77899999 567888888876 6789999999875     789999999999999999998


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ  313 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  313 (471)
                      +..+....+                                       .+..++-+|-+..+-+|...|+|.+|.....+
T Consensus       244 Va~~~t~~G---------------------------------------~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  244 VASIRTGAG---------------------------------------RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hHHHHccCC---------------------------------------ccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            887765443                                       57778888988899999999999999999999


Q ss_pred             EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        314 EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       314 ~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      ++..+..|.++|.++++.++|.|++|.+.|..++|||++....+.++.. ..+...+++|..|  ++++|....|.||.
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            9999999999999999999999999999999999999999887777654 4567888888554  33444556799995

>KOG0322|consensus

Probab=99.59  E-value=1.2e-14  Score=123.18  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=126.5

Q ss_pred             ecCCcCeEEEEEecC-CC--EEEEEeCCCcEEEEeCCCCce----------EEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        149 VGDTRPISYCSFSPD-SQ--HVATASWSGLCKLWTVPECEL----------VQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~-~~--~l~tg~~dg~i~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      .+..+.+.|..+..+ ++  +|++|-.+|.|.+||+.++..          +.....|..+|.++.|.+.-.     .=+
T Consensus       147 ~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-----rGi  221 (323)
T KOG0322|consen  147 RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-----RGI  221 (323)
T ss_pred             ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-----CCc
Confidence            356677888775433 33  356788899999999998733          333456899999999987654     357


Q ss_pred             EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEE
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +|+.+..+..|+++.......+..                                  ..... .-.|..+.+-||++.+
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~----------------------------------e~~lk-npGv~gvrIRpD~KIl  266 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRK----------------------------------EITLK-NPGVSGVRIRPDGKIL  266 (323)
T ss_pred             CCCccccceeeeeccccCcccccc----------------------------------eEEec-CCCccceEEccCCcEE
Confidence            888888899998854311111110                                  00011 1158889999999999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      |+++.|+.|+||..++.+++..+.-|...|++++|+|+..++++++.|++|.+|++
T Consensus       267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999999999999999999999999986

>KOG0649|consensus

Probab=99.59  E-value=9.6e-13  Score=110.47  Aligned_cols=198  Identities=15%  Similarity=0.198  Sum_probs=142.9

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      -.|+++-..|..+-+++++.|+.++-||+++|+..+++++|+..|.++.--..+.     .+++|+.||++++||.++++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-----qilsG~EDGtvRvWd~kt~k  189 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-----QILSGAEDGTVRVWDTKTQK  189 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-----ceeecCCCccEEEEeccccc
Confidence            4688999998877777777799999999999999999999999999998844444     49999999999999999999


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  312 (471)
                      ++..+.....                             ...+..+....|.+++.+  ..++++|+ ...+.+|.++..
T Consensus       190 ~v~~ie~yk~-----------------------------~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrss  237 (325)
T KOG0649|consen  190 HVSMIEPYKN-----------------------------PNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSS  237 (325)
T ss_pred             eeEEeccccC-----------------------------hhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCC
Confidence            8887765432                             112222323356666654  55777766 567999999998


Q ss_pred             cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q psy11350        313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG-YHLATGSEDNAVKIW  391 (471)
Q Consensus       313 ~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~i~iw  391 (471)
                      ++...+. -..++..+.|..  ..+++++..+.|.-|.+ +|..-..........++..|+... ++|-.++..+.+.|+
T Consensus       238 e~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  238 ESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CceEEEe-cccceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            8877665 356677888864  47888888888999976 344433444444455666665443 344445555556554

>KOG1240|consensus

Probab=99.58  E-value=1.1e-12  Score=132.79  Aligned_cols=249  Identities=17%  Similarity=0.157  Sum_probs=168.9

Q ss_pred             eeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCC-------CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPE-------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ..+..|+..|..++.++.. .++++||.||+|++||...       .+...++..-.+++.++...+.+.     .+|.+
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-----~~Av~ 1116 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-----QFAVS 1116 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-----eEEEE
Confidence            3445688889888887665 9999999999999999853       123344444578899999999888     69999


Q ss_pred             eCCCcEEEEeCCCC--c-----ceeeecCCCCcce-EEEEECCC-CC-EEEEEeCCCeEEeccccc-----ccc-CCCCc
Q psy11350        218 AQDGSVKLWSLDKD--T-----PLANLEGHEPFRV-SRIKFHPS-GR-FLGTCCWDHSWRLDTPLA-----NLE-GHEPF  281 (471)
Q Consensus       218 ~~dg~i~iwd~~~~--~-----~~~~~~~~~~~~v-~~~~~s~~-~~-~i~~~~~d~~~~~~~~~~-----~~~-~~~~~  281 (471)
                      +.||.|.+.+++..  .     +......+....+ ..-+|... +. .++.+..-+.+..|....     .++ ....+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999998752  1     2222222222233 33344332 22 455555555543332211     111 11134


Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-CCCCCeEEEEEeCC---CCEEEEEe--CCCeEEEEeCCCCe
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQGD---GSVVATGG--LDAFGRVWDLRTGR  355 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d---~~~l~t~~--~dg~i~iwd~~~~~  355 (471)
                      .|++++.+|.++++++|+..|.+.+||++-+.++.... ++..++..+..+|-   ....++++  ..+.|.+|++.+|.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            69999999999999999999999999999888887653 45678888887772   24555444  46789999999987


Q ss_pred             eEEEecccC-----------------c--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        356 CIMFLEGHL-----------------K--SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       356 ~~~~~~~h~-----------------~--~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      +...+....                 .  ......+..-+..+.+|+.|..|+.||.......
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            666554321                 0  1112223334568899999999999999876544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=4.1e-12  Score=124.24  Aligned_cols=217  Identities=12%  Similarity=0.043  Sum_probs=141.6

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe---CCCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA---QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ..|.+||...... +.+..+...+...+|+|++.     .|+..+   .+..|.+|++.+++........ . .+..+.|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~-----~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~-~~~~~~~  250 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGS-----KLAYVTFESGRSALVIQTLANGAVRQVASFP-R-HNGAPAF  250 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCC-----EEEEEEecCCCcEEEEEECCCCCeEEccCCC-C-CcCCeEE
Confidence            4799999875544 34445667899999999998     455433   2457999999887543322211 1 3456899


Q ss_pred             CCCCCEEEEE-eCCCe--EE---eccc-cccccCCCCcceEEEEECCCCCEEEEEecC-C--eEEEEECCCCcEEEEeeC
Q psy11350        251 HPSGRFLGTC-CWDHS--WR---LDTP-LANLEGHEPFRVSRIKFHPSGRFLGTCCWD-H--SWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       251 s~~~~~i~~~-~~d~~--~~---~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~  320 (471)
                      +|||+.|+.. +.++.  +.   +... ...+..+ ...+....|+|+|+.|+..+.+ +  .|.++|+.+++. ..+..
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~  328 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW  328 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence            9999988865 33443  22   2111 2222222 3357789999999988877754 3  455567776644 33343


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCc---EEEEECC
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA---VKIWDLR  394 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~---i~iwd~~  394 (471)
                      +........|+|||++|+..+.+   ..|++||+.++... .+... .......|+|||++|+.++.++.   +.++++.
T Consensus       329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            44456678999999998876543   35889999888643 33321 23456789999999999888765   6777774


Q ss_pred             Cccchheec
Q psy11350        395 KRRLLKWCT  403 (471)
Q Consensus       395 ~~~~~~~~~  403 (471)
                       ++....+.
T Consensus       407 -G~~~~~l~  414 (429)
T PRK03629        407 -GRFKARLP  414 (429)
T ss_pred             -CCCeEECc
Confidence             44444443

>KOG4497|consensus

Probab=99.56  E-value=6.8e-13  Score=116.03  Aligned_cols=239  Identities=17%  Similarity=0.279  Sum_probs=171.2

Q ss_pred             CeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        154 PISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      .|.-+.|..|..+++ ....++.|.+|++...+-...+.....++.+++|+|++.+    +|.+...+-.|.+|.+.+..
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrh----iL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRH----ILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcce----EeeeecceeEEEEEEeccce
Confidence            566678888877655 5567889999999988888888877889999999999976    88889999999999998766


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCe-----------EEe-------------------------cccccc--
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-----------WRL-------------------------DTPLAN--  274 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-----------~~~-------------------------~~~~~~--  274 (471)
                      ....-  +....+..++|+|||++.+.++.-..           |.+                         +.....  
T Consensus       126 ~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk  203 (447)
T KOG4497|consen  126 GYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK  203 (447)
T ss_pred             eEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe
Confidence            54332  22236789999999999887764211           111                         111111  


Q ss_pred             -ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEE--------------------------------------
Q psy11350        275 -LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV--------------------------------------  315 (471)
Q Consensus       275 -~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------------------------------  315 (471)
                       +.-+..-.+..++|+|.+++|++|+.|+.+++.+--+.++.                                      
T Consensus       204 v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~  283 (447)
T KOG4497|consen  204 VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD  283 (447)
T ss_pred             eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence             11222235788999999999999999999888653221100                                      


Q ss_pred             ----------------------EEee------CCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCeeEEEecccCc
Q psy11350        316 ----------------------LHQE------GHGKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       316 ----------------------~~~~------~~~~~v~~~~~s~d~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                                            ..++      .....+.-++|++|..+++|-.  .-+.+.+||++..+....+. ...
T Consensus       284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~  362 (447)
T KOG4497|consen  284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKH  362 (447)
T ss_pred             cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hcc
Confidence                                  0000      1122355789999999888764  23569999998876655544 557


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      +|....|.|....|+.+.....+++|...-...+
T Consensus       363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence            9999999998888888877788999987654433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.6e-12  Score=127.29  Aligned_cols=214  Identities=16%  Similarity=0.095  Sum_probs=137.8

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---CcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---GSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ..|.+||. ++...+.+..+...+.+.+|+|++.     .|+..+.+   ..|.+||+.+++.... .... .......|
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~-----~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~-g~~~~~~~  247 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT-----KLAYVSFESKKPVVYVHDLATGRRRVV-ANFK-GSNSAPAW  247 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCC-----EEEEEEccCCCcEEEEEECCCCCEEEe-ecCC-CCccceEE
Confidence            46778886 4555555667778899999999998     46655532   4599999988865432 2222 24568899


Q ss_pred             CCCCCEEEE-EeCCCeEEecc------ccccccCCCCcceEEEEECCCCCEEEEEec-CCeEEEE--ECCCCcEEEEeeC
Q psy11350        251 HPSGRFLGT-CCWDHSWRLDT------PLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLW--DLNQGQEVLHQEG  320 (471)
Q Consensus       251 s~~~~~i~~-~~~d~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~  320 (471)
                      +|||+.++. .+.++..+++.      ....+..+ ........|+|||++|+..+. +|...||  ++.+++.. .+..
T Consensus       248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~  325 (427)
T PRK02889        248 SPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTF  325 (427)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEec
Confidence            999998875 45566533321      12233333 234567889999998886654 4555555  44554432 2222


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC---cEEEEECC
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDA---FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN---AVKIWDLR  394 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---~i~iwd~~  394 (471)
                      +.......+|+|||++|+..+.++   .|++||+.+++... +..+ .......|+|||+.|+.++.++   .+.+.++ 
T Consensus       326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-  402 (427)
T PRK02889        326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-  402 (427)
T ss_pred             CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence            233345678999999998776554   69999998886543 3322 3446789999999988877554   2445555 


Q ss_pred             Cccchh
Q psy11350        395 KRRLLK  400 (471)
Q Consensus       395 ~~~~~~  400 (471)
                      .++...
T Consensus       403 ~g~~~~  408 (427)
T PRK02889        403 DGRIKQ  408 (427)
T ss_pred             CCCceE
Confidence            344333

>KOG2139|consensus

Probab=99.55  E-value=1.1e-12  Score=116.25  Aligned_cols=223  Identities=16%  Similarity=0.203  Sum_probs=150.7

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASW-SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .|| .+|++|+|++||..|++++. |..|.|||+.++..+......-+.+.-+.|+|++.     +|+.++-|+..++|+
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd-----~lfaAt~davfrlw~  266 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD-----VLFAATCDAVFRLWQ  266 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC-----EEEEecccceeeeeh
Confidence            456 79999999999999999885 57899999999877765544467889999999998     799999999999997


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEE-EEecCCeEEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHSWRL  306 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~i  306 (471)
                      ..............+ .|....|+|+|.+++..+..                ...+.++.|......+. .++.-...-+
T Consensus       267 e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sg----------------sp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  267 ENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSG----------------SPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             hcccceecceeccCC-ceeeeeecCCCCEEEEEEcC----------------CceEEEEeecCCCccccCcccceeeeee
Confidence            544332223333333 89999999999988766543                22467777765433332 3443344445


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC--------eEEEEeCCCCeeEEEe-ccc--CcCEEEEEEcC-
Q psy11350        307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA--------FGRVWDLRTGRCIMFL-EGH--LKSVFSVDFSP-  374 (471)
Q Consensus       307 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg--------~i~iwd~~~~~~~~~~-~~h--~~~v~~~~~sp-  374 (471)
                      -|+..-....-..--.+++.+++|.|.|.+|++.-..+        .|.+||.+..-.+... .+.  ......+.|+| 
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl  409 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL  409 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence            55542211111122357789999999999999875443        3677887654333222 111  12255667776 


Q ss_pred             --CCCEEEEEeCCCcEEEEECC
Q psy11350        375 --DGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       375 --~~~~l~s~s~dg~i~iwd~~  394 (471)
                        ++.+|..+=..|.+.-|++.
T Consensus       410 ~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  410 KNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ccCCcEEEEEeccCceEeeeeE
Confidence              57777777777888877764

>KOG1310|consensus

Probab=99.55  E-value=3.4e-14  Score=131.93  Aligned_cols=166  Identities=22%  Similarity=0.315  Sum_probs=130.9

Q ss_pred             eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       186 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                      ....+.||.+.|+|+.|+.+|.     +|++|+.|-.+.|||.-..++++.+...+                        
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-----lL~SGSDD~r~ivWd~~~~KllhsI~TgH------------------------   92 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-----LLASGSDDTRLIVWDPFEYKLLHSISTGH------------------------   92 (758)
T ss_pred             hhhhhccccceecceeecCCCC-----EEeecCCcceEEeecchhcceeeeeeccc------------------------
Confidence            3456789999999999999998     89999999999999988777666654322                        


Q ss_pred             EEeccccccccCCCCcceEEEEECC--CCCEEEEEecCCeEEEEECCCC----------cEEEEeeCCCCCeEEEEEeCC
Q psy11350        266 WRLDTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQG----------QEVLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~s~d  333 (471)
                                    ...|.++.|-|  +.+.+++|..|..|++||+...          .....+..|...|..++-.|+
T Consensus        93 --------------taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~  158 (758)
T KOG1310|consen   93 --------------TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN  158 (758)
T ss_pred             --------------ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCC
Confidence                          33688888888  5568999999999999999852          234455678889999999998


Q ss_pred             C-CEEEEEeCCCeEEEEeCCCCe-eE------E---EecccCcCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q psy11350        334 G-SVVATGGLDAFGRVWDLRTGR-CI------M---FLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       334 ~-~~l~t~~~dg~i~iwd~~~~~-~~------~---~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~  394 (471)
                      + ..+.+++.||+|+-+|++... +-      .   .+...--...++..+| +..+|+.|+.|-..++||.+
T Consensus       159 ~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  159 GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            7 789999999999999998632 11      1   1111223567899999 46789999999999999964

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=5.3e-12  Score=124.17  Aligned_cols=176  Identities=14%  Similarity=0.034  Sum_probs=121.5

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC---CCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ---DGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ..|.+||.. +...+.+..|...+....|+|++.     .|+..+.   +..|.+||+.+++... +...          
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~-----~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~----------  244 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQ-----EITYMSYANGRPRVYLLDLETGQREL-VGNF----------  244 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCC-----EEEEEEecCCCCEEEEEECCCCcEEE-eecC----------
Confidence            478899975 445556677888999999999998     4655543   4689999998775422 1111          


Q ss_pred             CCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEE-EEecCC--eEEEEECCCCcEEEEeeCCCCCeEE
Q psy11350        251 HPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDH--SWRLWDLNQGQEVLHQEGHGKPVYC  327 (471)
Q Consensus       251 s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~  327 (471)
                                                   ...+....|+|+|+.|+ +.+.++  .|++||+.+++. ..+..+......
T Consensus       245 -----------------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~  294 (435)
T PRK05137        245 -----------------------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTS  294 (435)
T ss_pred             -----------------------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCc
Confidence                                         12355677888887765 444444  488889987754 445556666778


Q ss_pred             EEEeCCCCEEEEEeC-CC--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCcc
Q psy11350        328 MSFQGDGSVVATGGL-DA--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED---NAVKIWDLRKRR  397 (471)
Q Consensus       328 ~~~s~d~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~  397 (471)
                      ..|+|||+.|+..+. +|  .|++||+..+... .+..+...+....|+|+|++|+..+.+   ..|.+||+..+.
T Consensus       295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        295 PSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             eeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            999999998887663 33  6888898766543 333344567778999999999877644   357888875543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.7e-12  Score=125.11  Aligned_cols=210  Identities=16%  Similarity=0.030  Sum_probs=139.2

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC---CCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ---DGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ..|.+||.. +...+.+..+...+.+..|+|++.     .|+.++.   ...|.+||+.+++.... ..... ......|
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~-----~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g-~~~~~~~  255 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK-----KLAYVSFERGRSAIYVQDLATGQRELV-ASFRG-INGAPSF  255 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCC-----EEEEEecCCCCcEEEEEECCCCCEEEe-ccCCC-CccCceE
Confidence            468999975 444555666778899999999998     5666553   34699999987765332 22222 4457899


Q ss_pred             CCCCCEEEE-EeCCCe--EEec---cc-cccccCCCCcceEEEEECCCCCEEEEEec-CCe--EEEEECCCCcEEEEeeC
Q psy11350        251 HPSGRFLGT-CCWDHS--WRLD---TP-LANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHS--WRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       251 s~~~~~i~~-~~~d~~--~~~~---~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~  320 (471)
                      +|+|+.++. .+.++.  +.+.   .. ...+..+ .......+|+|+|++|+.++. +|.  |+++|+.+++... +..
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~  333 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF  333 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec
Confidence            999998764 455554  2221   11 2223222 223567899999998887764 444  7777887765433 323


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC---CcEEEEECC
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDA---FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED---NAVKIWDLR  394 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d---g~i~iwd~~  394 (471)
                      +......++|+|||++|+..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++.
T Consensus       334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            334455789999999988765443   6999999888654 333 33345567999999988776653   357788875


Q ss_pred             C
Q psy11350        395 K  395 (471)
Q Consensus       395 ~  395 (471)
                      .
T Consensus       412 g  412 (433)
T PRK04922        412 G  412 (433)
T ss_pred             C
Confidence            4

>KOG1240|consensus

Probab=99.52  E-value=9.7e-13  Score=133.04  Aligned_cols=219  Identities=18%  Similarity=0.164  Sum_probs=159.2

Q ss_pred             EeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-----ceeeecCC-CCcceEEEEECC
Q psy11350        179 WTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-----PLANLEGH-EPFRVSRIKFHP  252 (471)
Q Consensus       179 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~v~~~~~s~  252 (471)
                      |++ .|..+..+..|...|..++.++....    +++||+.||+|++|+...-.     ......-+ ....+.++...+
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s----~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTS----LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCc----eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            553 57888888899999999999887733    89999999999999975321     11112222 344899999999


Q ss_pred             CCCEEEEEeCCCeEEeccc------------cccccCCCCcceEEE-EECC-CCC-EEEEEecCCeEEEEECCCCcEEEE
Q psy11350        253 SGRFLGTCCWDHSWRLDTP------------LANLEGHEPFRVSRI-KFHP-SGR-FLGTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       253 ~~~~i~~~~~d~~~~~~~~------------~~~~~~~~~~~v~~l-~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                      .+..+++++.||.+.+...            ......+..+.+.++ +|.. .+. .++.+..-+.|..||++.......
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            9999999999999665221            111222222233333 3332 233 788888899999999988765544


Q ss_pred             ee--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEEEEcCC---CCEEEEEe--CCCcEE
Q psy11350        318 QE--GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFSPD---GYHLATGS--EDNAVK  389 (471)
Q Consensus       318 ~~--~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~---~~~l~s~s--~dg~i~  389 (471)
                      ++  ...+.|++++.+|.++++++|+..|.+.+||++-+.++..+. ++..+|..+..+|-   ....++++  ..+-|.
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence            33  345789999999999999999999999999999998888765 45577888887773   24555544  467799


Q ss_pred             EEECCCccchhee
Q psy11350        390 IWDLRKRRLLKWC  402 (471)
Q Consensus       390 iwd~~~~~~~~~~  402 (471)
                      +|++.+|.+..++
T Consensus      1269 ~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVL 1281 (1431)
T ss_pred             eeecccCcceEEE
Confidence            9999998765544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.50  E-value=1.8e-11  Score=116.35  Aligned_cols=292  Identities=15%  Similarity=0.124  Sum_probs=177.6

Q ss_pred             EEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEE
Q psy11350        168 ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR  247 (471)
Q Consensus       168 ~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  247 (471)
                      ++-..+|.|.+.|..+.+.+..+......-..+.|+|++.     ++++++.||.|.++|+.+++.+.+++...  ...+
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr-----~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~   82 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR-----YLYVANRDGTVSVIDLATGKVVATIKVGG--NPRG   82 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS-----EEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC-----EEEEEcCCCeEEEEECCcccEEEEEecCC--Ccce
Confidence            4555689999999999999999986544445678999998     68888999999999999999999887655  6789


Q ss_pred             EEECCCCCEEEEEeC-CCeEEecc-----ccccccCC------CCcceEEEEECCCCCEEEEEecC-CeEEEEECCCCcE
Q psy11350        248 IKFHPSGRFLGTCCW-DHSWRLDT-----PLANLEGH------EPFRVSRIKFHPSGRFLGTCCWD-HSWRLWDLNQGQE  314 (471)
Q Consensus       248 ~~~s~~~~~i~~~~~-d~~~~~~~-----~~~~~~~~------~~~~v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~  314 (471)
                      +++++||++++++.. .+.+.+..     +...+...      ...++..+..+|....++..-.| +.|.+.|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            999999999988764 55544421     11111111      23467888889988866666554 8898999877654


Q ss_pred             EE-EeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEec----ccCcCEEEEE-------EcC--CCCEE
Q psy11350        315 VL-HQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLE----GHLKSVFSVD-------FSP--DGYHL  379 (471)
Q Consensus       315 ~~-~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~~~-------~sp--~~~~l  379 (471)
                      +. .............|+|++++++++ ..++.|-++|..+++.+..+.    .|..++..+-       |..  .+...
T Consensus       163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred             cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence            33 233345667889999999987665 567789999999998776553    2444444331       221  22333


Q ss_pred             EEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeec-ccCC--Ccccccchhhhcccccceeeec--ccc
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLE-SLNP--GIGNIISSALKEQVEPIPLLLD--IQK  454 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~  454 (471)
                      ++.-..+.+.+||..+.+.++.+....+.  ..+....+......+ ..++  ....++.......+..+...+.  +-.
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h  320 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH  320 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred             cccccCCccccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence            23333346668999999999988865333  444445554444443 2222  2233444333344444444444  678


Q ss_pred             eeeeecCCeEEEee
Q psy11350        455 LTFKFDSDLHAMVL  468 (471)
Q Consensus       455 l~fs~dg~~lA~~~  468 (471)
                      +.|++||+.+-+..
T Consensus       321 ~ef~~dG~~v~vS~  334 (369)
T PF02239_consen  321 MEFNPDGKEVWVSV  334 (369)
T ss_dssp             EEE-TTSSEEEEEE
T ss_pred             cEECCCCCEEEEEE
Confidence            89999998765543

...

>KOG4227|consensus

Probab=99.50  E-value=2.9e-12  Score=114.53  Aligned_cols=206  Identities=17%  Similarity=0.180  Sum_probs=153.7

Q ss_pred             EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC------CCcceeeecCCCCcceEEEEECCCCCEEEEEeC
Q psy11350        189 TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD------KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  262 (471)
Q Consensus       189 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~  262 (471)
                      .+.+|.+.|++|.|+.++.     +|++|+.|..+++|+++      +.+++.....++...|.|++|...+.++++|..
T Consensus        51 D~~~H~GCiNAlqFS~N~~-----~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~  125 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDR-----FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER  125 (609)
T ss_pred             hhhhhccccceeeeccCCe-----EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence            3568999999999999987     79999999999999975      345666666666569999999999999999999


Q ss_pred             CCeEEeccc---ccc-ccCC--CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc-E--EEEeeCCCCCeEEEEEeC-
Q psy11350        263 DHSWRLDTP---LAN-LEGH--EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ-E--VLHQEGHGKPVYCMSFQG-  332 (471)
Q Consensus       263 d~~~~~~~~---~~~-~~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~s~-  332 (471)
                      ++++.....   ... ...|  ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ +  +...-......+.+-|+| 
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            998655321   111 1112  24579999999999999999999999999998754 2  222333456678899999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCe-eEEEeccc------CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        333 DGSVVATGGLDAFGRVWDLRTGR-CIMFLEGH------LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       333 d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h------~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      ...+|++.+..+-+-+||.+... ++....+.      ...-.++.|+|+|..|.+--....-.+||+-+.++.
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~  279 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF  279 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence            56788999999999999998653 22221111      122356789999998888766656667787765543

>KOG2111|consensus

Probab=99.50  E-value=5e-11  Score=104.21  Aligned_cols=170  Identities=12%  Similarity=0.234  Sum_probs=125.4

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC-CCcceeeecCCC-CcceEEEEEC
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD-KDTPLANLEGHE-PFRVSRIKFH  251 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-~~~v~~~~~s  251 (471)
                      ..|.|||=...+++.++. ...+|.+|.+.++.       |+.. ..+.|.||... ..+.++.+.... +..+.++.-+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r-------iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR-------IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT  145 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCe-------EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence            579999966667777765 36899999998873       4444 35889999986 445555554333 2244444444


Q ss_pred             CCCCEEEEEeC-CCeEEec----c---ccccccCCCCcceEEEEECCCCCEEEEEecCCe-EEEEECCCCcEEEEeeC--
Q psy11350        252 PSGRFLGTCCW-DHSWRLD----T---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WRLWDLNQGQEVLHQEG--  320 (471)
Q Consensus       252 ~~~~~i~~~~~-d~~~~~~----~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--  320 (471)
                      .+..+|+.-+. -|.+.+.    .   +...+..| ...|.|++.+.+|..+|++|..|+ |+|||..+|+++..+..  
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence            44445554333 3555541    1   22455666 668999999999999999999998 89999999999988754  


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      ....|++++|||+..+|+++|..|+++|+.++.
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            235799999999999999999999999998865

>KOG4547|consensus

Probab=99.48  E-value=1.1e-11  Score=116.83  Aligned_cols=196  Identities=17%  Similarity=0.193  Sum_probs=153.3

Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCceEEEeec---CCCCEEEEEEe------eCC---------CCCCccEEEEEeCCCc
Q psy11350        161 SPDSQHVATASWSGLCKLWTVPECELVQTFRG---HDCNVGAIEFH------PLP---------SEGAVCSLASCAQDGS  222 (471)
Q Consensus       161 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~------~~~---------~~~~~~~l~s~~~dg~  222 (471)
                      .|-..++|....||.+++|++..++....|..   -.+..++..|.      |..         .......++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567899999999999999998887776653   12334455553      100         0112225777888899


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      |.+|++..++....+.....                                     .+.|.++.++.+-..|.+++.|+
T Consensus        82 v~~ys~~~g~it~~~st~~h-------------------------------------~~~v~~~~~~~~~~ciyS~~ad~  124 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKH-------------------------------------YGNVNEILDAQRLGCIYSVGADL  124 (541)
T ss_pred             EEEEEecCCeEEEEEecCCC-------------------------------------CCcceeeecccccCceEecCCce
Confidence            99999888876666653221                                     45789999999989999999999


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC-----CC
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD-----GY  377 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~-----~~  377 (471)
                      .+..|+....+.++.+......+.+++++|||..+++++  +.|++||+.+++.+.+|.||.++|.++.|..+     |.
T Consensus       125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~  202 (541)
T KOG4547|consen  125 KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK  202 (541)
T ss_pred             eEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence            999999999999999988888999999999999999885  57999999999999999999999999999876     66


Q ss_pred             EEEEE-eCCCcEEEEECCC
Q psy11350        378 HLATG-SEDNAVKIWDLRK  395 (471)
Q Consensus       378 ~l~s~-s~dg~i~iwd~~~  395 (471)
                      ++.++ ..+..+.+|-+..
T Consensus       203 ~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  203 YVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeeeccccccceeEEEEEc
Confidence            66554 4556677887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=1.2e-11  Score=121.61  Aligned_cols=198  Identities=19%  Similarity=0.156  Sum_probs=133.5

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--c
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--S  222 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~  222 (471)
                      +..+...+.+.+|+|||++|+.++..   ..|++||+.+++... +..+...+.+++|+|++..    ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~----l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK----LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE----EEEEECCCCCcc
Confidence            34566678899999999999987654   479999998876543 3345566778999999873    344555554  4


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC-
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-  301 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-  301 (471)
                      |.+|++.++.... +..+.                                       .......|+|+|++|+..+.. 
T Consensus       260 i~~~d~~~~~~~~-l~~~~---------------------------------------~~~~~~~~s~dg~~l~~~s~~~  299 (417)
T TIGR02800       260 IYVMDLDGKQLTR-LTNGP---------------------------------------GIDTEPSWSPDGKSIAFTSDRG  299 (417)
T ss_pred             EEEEECCCCCEEE-CCCCC---------------------------------------CCCCCEEECCCCCEEEEEECCC
Confidence            8888887654322 21111                                       112345678888877665542 


Q ss_pred             C--eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        302 H--SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA---FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       302 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      +  .|+++|+.+++. ..+..+...+..+.|+|+|++|+.++.++   .|.+||+.++... .+... .......|+|+|
T Consensus       300 g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg  376 (417)
T TIGR02800       300 GSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNG  376 (417)
T ss_pred             CCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCC
Confidence            2  588888877654 34444556677889999999999888776   7999999876543 33222 234566899999


Q ss_pred             CEEEEEeCCC---cEEEEEC
Q psy11350        377 YHLATGSEDN---AVKIWDL  393 (471)
Q Consensus       377 ~~l~s~s~dg---~i~iwd~  393 (471)
                      ++|+..+.++   .+.+.+.
T Consensus       377 ~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       377 RMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CEEEEEEeCCCcEEEEEEEC
Confidence            9888777654   3445553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974|consensus

Probab=99.47  E-value=2.8e-12  Score=128.07  Aligned_cols=197  Identities=19%  Similarity=0.304  Sum_probs=152.2

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEE--EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVG--AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      |....+.-....++.++.++.+.+||...+.....+... ....  +....-++  ...+++++|+.-+.|.+|+.....
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s--~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDS--AEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCC-ceEEEEeEEEEecc--CcEEEEEeccccccEEEEeccccC
Confidence            333455667788999999999999999887766655432 2221  11111111  123479999999999999986222


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  312 (471)
                      .-.                                      .+.+| .+.|..+.|+-+|+++++.|.|.++++|++++.
T Consensus       167 ~p~--------------------------------------~l~GH-eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  167 KPI--------------------------------------RLKGH-EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             Ccc--------------------------------------eeccc-CCceEEEEEccCCcEEEEEecCcceeeeecccc
Confidence            111                                      23444 447999999999999999999999999999998


Q ss_pred             cEEE-EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc-CEEEEEEcCCCCEEEEEeCCCcEEE
Q psy11350        313 QEVL-HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK-SVFSVDFSPDGYHLATGSEDNAVKI  390 (471)
Q Consensus       313 ~~~~-~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~i~i  390 (471)
                      +... ...+|...|..++|.|+  .+++++.|-+.++|+. .+..+..+.+|.+ .|..++..++...++|++.||.+++
T Consensus       208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~  284 (967)
T KOG0974|consen  208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKL  284 (967)
T ss_pred             cccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhh
Confidence            7766 67889999999999988  8999999999999975 4555668888864 6999999999999999999999999


Q ss_pred             EECCCc
Q psy11350        391 WDLRKR  396 (471)
Q Consensus       391 wd~~~~  396 (471)
                      ||+...
T Consensus       285 ~~l~~r  290 (967)
T KOG0974|consen  285 WDLNGR  290 (967)
T ss_pred             hhhhcc
Confidence            998654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.47  E-value=3.9e-10  Score=107.28  Aligned_cols=243  Identities=19%  Similarity=0.255  Sum_probs=158.8

Q ss_pred             cCeEEEEEecCCCEEEEEeC----CCcEEEEeCCC--Cc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCCcE
Q psy11350        153 RPISYCSFSPDSQHVATASW----SGLCKLWTVPE--CE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDGSV  223 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~----dg~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i  223 (471)
                      ...+.++++|++++|++...    +|.|..|.+..  ++  .+............++++|++.     +|+++. .+|.|
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-----~l~vany~~g~v  111 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-----FLYVANYGGGSV  111 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-----EEEEEETTTTEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-----EEEEEEccCCeE
Confidence            44566789999999998876    47899988765  33  3333332344556899999998     455555 68999


Q ss_pred             EEEeCCCC-cceee---ec---------CCCCcceEEEEECCCCCEEEEEeCCC--e--EEecccc------ccccCCCC
Q psy11350        224 KLWSLDKD-TPLAN---LE---------GHEPFRVSRIKFHPSGRFLGTCCWDH--S--WRLDTPL------ANLEGHEP  280 (471)
Q Consensus       224 ~iwd~~~~-~~~~~---~~---------~~~~~~v~~~~~s~~~~~i~~~~~d~--~--~~~~~~~------~~~~~~~~  280 (471)
                      .++++... .....   +.         ........++.++|+|+++++.....  .  +.+....      ..+.....
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            99999763 32221   11         12334688999999999998875433  2  2222211      12233445


Q ss_pred             cceEEEEECCCCCEEEEEe-cCCeEEEEECC--CCcE--EEEeeC----C--CCCeEEEEEeCCCCEEEEEe-CCCeEEE
Q psy11350        281 FRVSRIKFHPSGRFLGTCC-WDHSWRLWDLN--QGQE--VLHQEG----H--GKPVYCMSFQGDGSVVATGG-LDAFGRV  348 (471)
Q Consensus       281 ~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~----~--~~~v~~~~~s~d~~~l~t~~-~dg~i~i  348 (471)
                      .....+.|+|+++++++.. .+++|.+|++.  ++..  +..+..    .  ......|+++|||++|+++. ..+.|.+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            5688999999999887665 46789999988  4432  222211    1  12578899999999888766 4678999


Q ss_pred             EeCC--CC--eeEEEecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCccchh
Q psy11350        349 WDLR--TG--RCIMFLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDL--RKRRLLK  400 (471)
Q Consensus       349 wd~~--~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~--~~~~~~~  400 (471)
                      |++.  ++  +.+..+.........++++|+|++|+++. .++.|.+|++  .+|++..
T Consensus       272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            9984  33  33344443345589999999999998876 5578999876  4666544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.2e-11  Score=121.60  Aligned_cols=214  Identities=16%  Similarity=0.135  Sum_probs=136.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc--EE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS--VK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~  224 (471)
                      .+...+.+..|||||+.|+..+.+   ..|++||+.+++.... ....+......|+|++..    ++++.+.+|.  |.
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~----La~~~~~~g~~~Iy  289 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKK----LALVLSKDGQPEIY  289 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCE----EEEEEeCCCCeEEE
Confidence            345577889999999999876543   3689999988765332 222334457899999984    4445666775  77


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-Ce---EEec--c-ccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HS---WRLD--T-PLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~---~~~~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      +||+.+++.. .+..+.. ......|+|||+.++..+.. +.   +.+.  . ....+... .......+|+|+|++|+.
T Consensus       290 ~~dl~tg~~~-~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        290 VVDIATKALT-RITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEECCCCCeE-ECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEE
Confidence            7788776543 3333322 56778999999988877653 33   2221  1 11122111 112345789999999887


Q ss_pred             EecC-C--eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC-C--eEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        298 CCWD-H--SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD-A--FGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       298 ~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      .+.+ +  .|.++|+.+++... +.... ......|+|||+.|+..+.+ +  .+++++. +|.....+..+.+.+...+
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~  443 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPA  443 (448)
T ss_pred             EEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCc
Confidence            6653 3  46678888876432 22221 22245899999987765543 3  3777786 5666666766667788888


Q ss_pred             EcC
Q psy11350        372 FSP  374 (471)
Q Consensus       372 ~sp  374 (471)
                      |+|
T Consensus       444 Wsp  446 (448)
T PRK04792        444 WSP  446 (448)
T ss_pred             cCC
Confidence            987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=4.9e-11  Score=117.27  Aligned_cols=176  Identities=17%  Similarity=0.050  Sum_probs=120.4

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---CcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---GSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ..|.++|.... ..+.+..+...+....|+|++.     .|+.++.+   ..|.+||+.+++...... .          
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~-----~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~----------  232 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQ-----KLAYVSFESGKPEIYVQDLATGQREKVAS-F----------  232 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecCCCceecccCCCCCC-----EEEEEEcCCCCcEEEEEECCCCCEEEeec-C----------
Confidence            46888887543 3455556677889999999998     56655543   479999998764332211 1          


Q ss_pred             CCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE-ecC--CeEEEEECCCCcEEEEeeCCCCCeEE
Q psy11350        251 HPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWD--HSWRLWDLNQGQEVLHQEGHGKPVYC  327 (471)
Q Consensus       251 s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~  327 (471)
                                                   ...+.+++|+|+|+.|+.. +.+  ..|++||+.+++. ..+..+......
T Consensus       233 -----------------------------~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~  282 (417)
T TIGR02800       233 -----------------------------PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTE  282 (417)
T ss_pred             -----------------------------CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCC
Confidence                                         1124457788888766543 333  3588999987754 334445555567


Q ss_pred             EEEeCCCCEEEEEeC-CC--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCcc
Q psy11350        328 MSFQGDGSVVATGGL-DA--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN---AVKIWDLRKRR  397 (471)
Q Consensus       328 ~~~s~d~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~  397 (471)
                      ..|+|||+.|+..+. ++  .|+++|+.+++.. .+..+...+..+.|+|+|++|+.++.++   .|.+||+.++.
T Consensus       283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             EEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            899999998876654 33  5888898877643 4444556678889999999999888776   78899988754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3.8e-11  Score=118.26  Aligned_cols=216  Identities=15%  Similarity=0.102  Sum_probs=139.2

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--cE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--SV  223 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i  223 (471)
                      ..+...+...+|||||+.|+..+.+   ..|++|++.+++... +....+.+....|+|++..    ++++.+.+|  .|
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~----la~~~~~~g~~~I  269 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK----LAFVLSKDGNPEI  269 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE----EEEEEccCCCceE
Confidence            3567788999999999999876643   369999998886544 3333445567899999983    334555555  57


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-CeEEe---c--cc-cccccCCCCcceEEEEECCCCCEEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HSWRL---D--TP-LANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~~~~---~--~~-~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      .+||+.++.... +..+.. ......|+|||+.++..+.. +...+   .  .. ...+... ........|+|+|++|+
T Consensus       270 y~~d~~~~~~~~-lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        270 YVMDLASRQLSR-VTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLV  346 (430)
T ss_pred             EEEECCCCCeEE-cccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEE
Confidence            888988775433 333322 45678899999988777643 33222   1  11 1111111 11234578999999998


Q ss_pred             EEecCC---eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        297 TCCWDH---SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       297 ~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                      ..+.++   .|.+||+.+++.......  .......|+|||+.++..+.+   ..|+++++. +.....+..+.+.+...
T Consensus       347 ~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p  423 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREP  423 (430)
T ss_pred             EEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCC
Confidence            776532   588999988764332222  222356899999988876643   347777874 44444555555677778


Q ss_pred             EEcCC
Q psy11350        371 DFSPD  375 (471)
Q Consensus       371 ~~sp~  375 (471)
                      +|+|-
T Consensus       424 ~ws~~  428 (430)
T PRK00178        424 SWSPY  428 (430)
T ss_pred             ccCCC
Confidence            88863

>KOG2315|consensus

Probab=99.43  E-value=3.8e-11  Score=112.48  Aligned_cols=231  Identities=17%  Similarity=0.292  Sum_probs=153.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEE-----EeCC-----C
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS-----CAQD-----G  221 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s-----~~~d-----g  221 (471)
                      ..++...++|++|+++|.+. +..++|++..++..+.+....  .+.++.|+|.+.     +|.+     ...+     -
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~-----yL~T~e~~~i~~~~~~~~p  105 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN-----YLLTWEPWAIYGPKNASNP  105 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeeccccc-----ccccccccccccCCCCCCC
Confidence            44577888999999888776 889999999888655554432  788999999987     3432     1122     3


Q ss_pred             cEEEEeCCCCcceeeecCCC---------------------------------------CcceEEEEECCCCC--EEEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHE---------------------------------------PFRVSRIKFHPSGR--FLGTC  260 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~---------------------------------------~~~v~~~~~s~~~~--~i~~~  260 (471)
                      .+++|++.++.....+....                                       ...+..+.++|.+.  ++++-
T Consensus       106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy  185 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY  185 (566)
T ss_pred             ceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence            46688877643222221110                                       01456666666532  11111


Q ss_pred             --eCCCe---EEe--------------------------c----------------------------------cccccc
Q psy11350        261 --CWDHS---WRL--------------------------D----------------------------------TPLANL  275 (471)
Q Consensus       261 --~~d~~---~~~--------------------------~----------------------------------~~~~~~  275 (471)
                        ..+|.   +++                          |                                  ......
T Consensus       186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V  265 (566)
T KOG2315|consen  186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV  265 (566)
T ss_pred             ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence              00000   111                          0                                  001111


Q ss_pred             cCCCCcceEEEEECCCCCEEEEE--ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEe
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTC--CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL---DAFGRVWD  350 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~---dg~i~iwd  350 (471)
                      .....++|.++.|+|+++-|+++  -.-..+.|||++ +.++..+  ..++-+++-|+|.|++|+.+|.   -|.|-|||
T Consensus       266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            22235589999999999876654  456789999986 4555554  3567788999999999998875   47899999


Q ss_pred             CCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC------CCcEEEEECCC
Q psy11350        351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE------DNAVKIWDLRK  395 (471)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~------dg~i~iwd~~~  395 (471)
                      +.+.+++..+...  .-+-+.|+|||.+|+|++.      |+.++||++.-
T Consensus       343 v~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  343 VPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            9998888887654  4456789999999999874      68899999853

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=6.1e-10  Score=103.49  Aligned_cols=235  Identities=13%  Similarity=0.062  Sum_probs=154.1

Q ss_pred             EecCCCEEEEEeC----------CCcEEEEeCCCCceEEEeecCCC-------CEEEEEEeeCCCCCCccEEEEEe-C-C
Q psy11350        160 FSPDSQHVATASW----------SGLCKLWTVPECELVQTFRGHDC-------NVGAIEFHPLPSEGAVCSLASCA-Q-D  220 (471)
Q Consensus       160 ~s~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~~~~~~l~s~~-~-d  220 (471)
                      +||||+.|+++..          +..|.+||+.+++.+..+.....       ....++++|+++     .|+... . +
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-----~l~V~n~~p~  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK-----TLLFYQFSPS  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC-----EEEEecCCCC
Confidence            8999999887765          78999999999999988864222       234789999998     455444 3 7


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceE------EEEECCCCCEEEEEe-CCCeEEeccccccccCCCCcce-EEEEECC-C
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVS------RIKFHPSGRFLGTCC-WDHSWRLDTPLANLEGHEPFRV-SRIKFHP-S  291 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~------~~~~s~~~~~i~~~~-~d~~~~~~~~~~~~~~~~~~~v-~~l~~~~-~  291 (471)
                      ..|.+.|+.+++.+..+.......+.      .+..+.||..+.... .+|...... ...+... ..++ ..-.|.+ +
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~-~~vf~~~-~~~v~~rP~~~~~d  205 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP-TEVFHPE-DEYLINHPAYSNKS  205 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee-eeeecCC-ccccccCCceEcCC
Confidence            99999999999988877754321111      112233333332221 122211111 0111110 0000 0003455 7


Q ss_pred             CCEEEEEecCCeEEEEECCCC-----cEEEEeeC-------CCCCeEEEEEeCCCCEEEEEe----------CCCeEEEE
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQG-----QEVLHQEG-------HGKPVYCMSFQGDGSVVATGG----------LDAFGRVW  349 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~-------~~~~v~~~~~s~d~~~l~t~~----------~dg~i~iw  349 (471)
                      |+++++... |+|.+.|+...     +....+..       ..+...-++++|+++.+++..          ..+.|.++
T Consensus       206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi  284 (352)
T TIGR02658       206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV  284 (352)
T ss_pred             CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence            877777766 99999996443     22222211       223344599999999888743          22579999


Q ss_pred             eCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCccchheec
Q psy11350        350 DLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATGS-EDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       350 d~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~  403 (471)
                      |..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+++.++++.
T Consensus       285 D~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       285 DAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             ECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            9999999988773 45899999999999 777666 67889999999999998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.2e-10  Score=113.68  Aligned_cols=220  Identities=17%  Similarity=0.098  Sum_probs=136.6

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--cEEEEeCCCCcceeeecCCCCcceEEEEEC
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--SVKLWSLDKDTPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  251 (471)
                      ..|.+.|...+.. +.+......+..-.|+|++....  ++++...+|  .|.+.++.+++...... ... ......|+
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~--~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g-~~~~p~wS  239 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFP--YLYVSYKLGVPKIFLGSLENPAGKKILA-LQG-NQLMPTFS  239 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceE--EEEEEccCCCceEEEEECCCCCceEeec-CCC-CccceEEC
Confidence            4677888765544 34444556677889999987411  122444444  47777887775433322 111 34568999


Q ss_pred             CCCCEEEEEeC-CCe----E---Eecc----ccccccCCCCcceEEEEECCCCCEEEEEe-cCCe--EEEEECCC-CcEE
Q psy11350        252 PSGRFLGTCCW-DHS----W---RLDT----PLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS--WRLWDLNQ-GQEV  315 (471)
Q Consensus       252 ~~~~~i~~~~~-d~~----~---~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~--i~iwd~~~-~~~~  315 (471)
                      |||+.|+..+. ++.    +   .+..    ....+...........+|+|||+.|+..+ .+|.  |.++++.. +...
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence            99999887664 222    1   1111    11122222122346789999999888765 4565  44445542 2334


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC---CCcEE
Q psy11350        316 LHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE---DNAVK  389 (471)
Q Consensus       316 ~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---dg~i~  389 (471)
                      ..+..+...+....|+|||+.|+..+.+   ..|++||+.+++... +......+....|+|||+.|+..+.   ...|.
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            4455555667789999999988876543   469999998887643 3333346778999999998875433   35688


Q ss_pred             EEECCCccch
Q psy11350        390 IWDLRKRRLL  399 (471)
Q Consensus       390 iwd~~~~~~~  399 (471)
                      +||+..++..
T Consensus       399 ~vdl~~g~~~  408 (428)
T PRK01029        399 LISLITKKTR  408 (428)
T ss_pred             EEECCCCCEE
Confidence            8999877653

>KOG3881|consensus

Probab=99.40  E-value=1.2e-11  Score=110.82  Aligned_cols=180  Identities=18%  Similarity=0.241  Sum_probs=136.9

Q ss_pred             cCeEEEEEecCCCE-EEEEeCC--CcEEEEeCCCCceEEEeecC---------CCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        153 RPISYCSFSPDSQH-VATASWS--GLCKLWTVPECELVQTFRGH---------DCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       153 ~~V~~~~~s~~~~~-l~tg~~d--g~i~iwd~~~~~~~~~~~~h---------~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      .++..+.-++...+ +|+|+..  ..+.|||+...+.+.+-+..         .-.++++.|.+....   ..|++++.-
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~---~~fat~T~~  225 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN---YKFATITRY  225 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC---ceEEEEecc
Confidence            34555555555444 5668888  88999999988665543321         124567888887321   169999999


Q ss_pred             CcEEEEeCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        221 GSVKLWSLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       221 g~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      +.+++||...++ ++..|.           |.                            ..+++++...|+++++++|.
T Consensus       226 hqvR~YDt~~qRRPV~~fd-----------~~----------------------------E~~is~~~l~p~gn~Iy~gn  266 (412)
T KOG3881|consen  226 HQVRLYDTRHQRRPVAQFD-----------FL----------------------------ENPISSTGLTPSGNFIYTGN  266 (412)
T ss_pred             eeEEEecCcccCcceeEec-----------cc----------------------------cCcceeeeecCCCcEEEEec
Confidence            999999987653 333332           22                            33699999999999999999


Q ss_pred             cCCeEEEEECCCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        300 WDHSWRLWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      .-|.+..||++.++.... +.+-.+.+.++..+|.+.+++++|.|..|||+|+.+.+++.... -...++++-+.++
T Consensus       267 ~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  267 TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            999999999999988776 78889999999999999999999999999999999976665433 3356777777654

>KOG2314|consensus

Probab=99.39  E-value=2.7e-10  Score=106.60  Aligned_cols=303  Identities=13%  Similarity=0.137  Sum_probs=195.5

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-----------CCcEE
Q psy11350        156 SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-----------DGSVK  224 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-----------dg~i~  224 (471)
                      +-+.|||-|.||+|--.- -|.+|--++...++.|. | ..|.-+.|||...     ||+|-+.           ...+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~Ek-----YLVT~s~~p~~~~~~d~e~~~l~  285 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-H-PGVQFIDFSPNEK-----YLVTYSPEPIIVEEDDNEGQQLI  285 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-C-CCceeeecCCccc-----eEEEecCCccccCcccCCCceEE
Confidence            567899999999998854 47899877666666654 4 4588999999988     7887553           25699


Q ss_pred             EEeCCCCcceeeecCC--CCcceEEEEECCCCCEEEEEeCCCeEEeccccccccC---CCCcceEEEEECCCCCEEEEEe
Q psy11350        225 LWSLDKDTPLANLEGH--EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEG---HEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      |||+.+|.....|...  ......-+.||.|+++++.-..++.....++...+..   -....|....|+|.++.||.-+
T Consensus       286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             EEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence            9999999988888763  2223456789999999998888766444333322211   1133688899999999888654


Q ss_pred             cC-----CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCeeEEEecccC
Q psy11350        300 WD-----HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG----------LDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       300 ~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      ..     ..+.+..+.+++.+++-.-|.-.=..+-|..+|.+|+.--          .-..+.|+.++........-.-.
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk  445 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK  445 (698)
T ss_pred             ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence            32     3577778877777766554443334566777888877532          22235566665543222222345


Q ss_pred             cCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC-c---cchheecccCCCccceeeccccceeeeecccCCCc--cccc
Q psy11350        365 KSVFSVDFSPDGYHLATGSE---DNAVKIWDLRK-R---RLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGI--GNII  435 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~---dg~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~  435 (471)
                      ..|...+|-|.|..+++-+.   ..++.+|.+.+ .   +++..+..   .....+..++.++..++....+..  ..++
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEE
Confidence            78999999999988776553   36789998873 2   33444332   222333444444444444443222  2233


Q ss_pred             chhh-hcccccceeeecccceeeeecCCeEEEeec
Q psy11350        436 SSAL-KEQVEPIPLLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       436 ~~~~-~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                      ...+ .......+-....+.+.+.|.|++..+++.
T Consensus       523 D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  523 DTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             ecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence            3222 222334455567789999999999998874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3.2e-10  Score=110.58  Aligned_cols=216  Identities=13%  Similarity=-0.005  Sum_probs=135.8

Q ss_pred             CCcCeEEEEEecCCCEEE---EEeCC--CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCC---
Q psy11350        151 DTRPISYCSFSPDSQHVA---TASWS--GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDG---  221 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~---tg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg---  221 (471)
                      +...+.+-+|||||+.++   +...+  ..|++.++.+++.... ....+......|+|++..     |+..+ .+|   
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~-----Laf~s~~~g~~d  256 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKL-----LAFISDRYGNPD  256 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCE-----EEEEECCCCCcc
Confidence            344567789999997532   34333  3688889887764433 333455567899999983     54433 333   


Q ss_pred             -cEEEEeCCCC---cceeeecCCCCcceEEEEECCCCCEEEEEeC-CCeEEecc-------c-cccccCCCCcceEEEEE
Q psy11350        222 -SVKLWSLDKD---TPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDT-------P-LANLEGHEPFRVSRIKF  288 (471)
Q Consensus       222 -~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~-------~-~~~~~~~~~~~v~~l~~  288 (471)
                       .+.+|++..+   .......... .......|+|||+.|+..+. ++...++.       . ...+... ...+....|
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~-~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~w  334 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAF-GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAW  334 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeE
Confidence             3455776653   2222222221 13467899999998887764 45432221       1 1122222 235678899


Q ss_pred             CCCCCEEEEEecC---CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCeeEEEecc
Q psy11350        289 HPSGRFLGTCCWD---HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL---DAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       289 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~  362 (471)
                      +|+|++|+..+.+   ..|.+||+.+++... +......+....|+|||+.|+..+.   ...|++||+..++..... .
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~  412 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-I  412 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-c
Confidence            9999998876543   469999999887543 3333445678999999998775433   356899999887654433 3


Q ss_pred             cCcCEEEEEEcCCC
Q psy11350        363 HLKSVFSVDFSPDG  376 (471)
Q Consensus       363 h~~~v~~~~~sp~~  376 (471)
                      ..+.+...+|+|-.
T Consensus       413 ~~g~~~~p~Ws~~~  426 (428)
T PRK01029        413 GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCcccCceecCCC
Confidence            44567788898753

>KOG1832|consensus

Probab=99.37  E-value=3.8e-13  Score=131.50  Aligned_cols=271  Identities=17%  Similarity=0.194  Sum_probs=189.1

Q ss_pred             ccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        139 LTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       139 ~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      +..|....++..|+...+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|.++|+.+.-+.++..    .|.+++
T Consensus      1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~----~Ltsss 1163 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST----QLTSSS 1163 (1516)
T ss_pred             HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce----eeeecc
Confidence            4456666777889999999999999999999999999999999999999999999999999998888873    343444


Q ss_pred             CCC-cEEEEeCCC-CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEE
Q psy11350        219 QDG-SVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       219 ~dg-~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      ... -..+|++.+ +.+.++|..                                           -.++.|+.....-+
T Consensus      1164 ~S~PlsaLW~~~s~~~~~Hsf~e-------------------------------------------d~~vkFsn~~q~r~ 1200 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE-------------------------------------------DKAVKFSNSLQFRA 1200 (1516)
T ss_pred             ccCchHHHhccccccCccccccc-------------------------------------------cceeehhhhHHHHH
Confidence            333 577899753 334444432                                           34677777666666


Q ss_pred             EEecCCeEEEEECCCCcEEEEee----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQE----GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      .|+......+||++++.++.++.    +....-++..|+|+..+++   .||  .+||++..+.++.|...+..+. -.|
T Consensus      1201 ~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~F 1274 (1516)
T KOG1832|consen 1201 LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGF 1274 (1516)
T ss_pred             hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccc
Confidence            67767789999999998766532    1223346788999888776   455  4799999888877765543333 359


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecc---------cCC-------Ccccccc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLES---------LNP-------GIGNIIS  436 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------~~~-------~~~~~~~  436 (471)
                      +|+|..++.-+.     |||+++.++++..+......   +++...+.+.+-..         ...       .....+.
T Consensus      1275 HP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldqc~---VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~ 1346 (1516)
T KOG1832|consen 1275 HPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQCA---VTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFD 1346 (1516)
T ss_pred             cCCCceEEeech-----hhhhHHHHHHhcCccccceE---EEeccCccchhhhhhhhhhhhhhcccccccchhhhhcccc
Confidence            999998888654     89999999998776544321   11111111111111         001       1122233


Q ss_pred             hhhhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        437 SALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      ......+..+++...+-.|+-+|...+|+++-++
T Consensus      1347 a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~ 1380 (1516)
T KOG1832|consen 1347 AIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEME 1380 (1516)
T ss_pred             ccccccceeeecccchhhhhcCCccceEEEEecc
Confidence            3333455666777788899999999999998764

>KOG0280|consensus

Probab=99.37  E-value=1.5e-10  Score=100.08  Aligned_cols=194  Identities=22%  Similarity=0.241  Sum_probs=138.3

Q ss_pred             CCcEEEEeCCCCceEE--Ee-ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEE
Q psy11350        173 SGLCKLWTVPECELVQ--TF-RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIK  249 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  249 (471)
                      .|.+.+|++.+.+...  ++ ..-.+.+..+.|.-....+.. .++-+-.+|.|.++..........+.+-..     ..
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~-~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-----~k  118 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDF-NLLDAHARGQIQLYRNDEDESSVHLRGLSS-----KK  118 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccc-eeeeccccceEEEEeeccceeeeeecccch-----hh
Confidence            4788899887655433  11 123456777888765544333 466777788888887654433333332211     00


Q ss_pred             ECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEeeCCCCCeEE
Q psy11350        250 FHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE--VLHQEGHGKPVYC  327 (471)
Q Consensus       250 ~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~  327 (471)
                      .                           . .....++.|++.+..++++..+|.+.+.+......  +...+.|..+...
T Consensus       119 i---------------------------~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt  170 (339)
T KOG0280|consen  119 I---------------------------S-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT  170 (339)
T ss_pred             h---------------------------h-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence            0                           0 00245788999999999999999999776655543  3478899999999


Q ss_pred             EEEeC-CCCEEEEEeCCCeEEEEeCC-CCeeEEE-ecccCcCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-Cccchh
Q psy11350        328 MSFQG-DGSVVATGGLDAFGRVWDLR-TGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLR-KRRLLK  400 (471)
Q Consensus       328 ~~~s~-d~~~l~t~~~dg~i~iwd~~-~~~~~~~-~~~h~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~-~~~~~~  400 (471)
                      ..|+. +.+++++|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+++||+.|..|++||.+ -++++.
T Consensus       171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            99987 56799999999999999999 3444443 456889999998887 68899999999999999999 567665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=8.7e-10  Score=108.65  Aligned_cols=208  Identities=14%  Similarity=0.068  Sum_probs=132.1

Q ss_pred             cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---CcEEEEeCCCCcceeeecCCCCcceEEEEEC
Q psy11350        175 LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---GSVKLWSLDKDTPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       175 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  251 (471)
                      .|.++|...+. .+.+..+...+....|+|++.     .|+..+.+   ..|.+|++.+++..... .... .+....|+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~-----~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g-~~~~~~~S  251 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK-----RIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEG-LNGAPAWS  251 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCC-----EEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCC-CcCCeEEC
Confidence            47888876544 445556677899999999998     46554433   36889999887654322 2221 44568999


Q ss_pred             CCCCEEEEE-eCCCeEEe-----ccc-cccccCCCCcceEEEEECCCCCEEEEEec-CC--eEEEEECCCCcEEEEeeCC
Q psy11350        252 PSGRFLGTC-CWDHSWRL-----DTP-LANLEGHEPFRVSRIKFHPSGRFLGTCCW-DH--SWRLWDLNQGQEVLHQEGH  321 (471)
Q Consensus       252 ~~~~~i~~~-~~d~~~~~-----~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~  321 (471)
                      |||+.++.. ..++...+     ... ...+..+ ........|+|+|+.|+..+. +|  .|+++|+.+++..... ..
T Consensus       252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~  329 (430)
T PRK00178        252 PDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FV  329 (430)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC
Confidence            999988754 44443222     111 1222222 334566889999998877664 33  5888888877643322 22


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCC-C--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC---CcEEEEECC
Q psy11350        322 GKPVYCMSFQGDGSVVATGGLD-A--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED---NAVKIWDLR  394 (471)
Q Consensus       322 ~~~v~~~~~s~d~~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d---g~i~iwd~~  394 (471)
                      ........|+|||+.|+..+.+ +  .|.+||+.+++.. .+. +........|+|||+.++..+.+   ..|.++++.
T Consensus       330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            2333457899999998877643 2  5889999887643 232 22223356899999988776644   346667764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=8.5e-10  Score=108.50  Aligned_cols=215  Identities=14%  Similarity=0.061  Sum_probs=132.1

Q ss_pred             cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCC--cEEEEeCCCCcceeeecCCCCcceEEEEEC
Q psy11350        175 LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDG--SVKLWSLDKDTPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       175 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  251 (471)
                      .|.++|...... +.+..+...+....|+|++.     .|+..+ .++  .|.+||+.+++....... .. ......|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~-----~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g-~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGR-----KLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG-INGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCC-----EEEEEEecCCCcEEEEEECCCCCeEEecCC-CC-CcCCeeEC
Confidence            677778655433 44555677899999999998     455443 333  588889887764332211 11 34478999


Q ss_pred             CCCCEEEEE-eCCCeEEe-----cc-ccccccCCCCcceEEEEECCCCCEEEEEec-CC--eEEEEECCCCcEEEEeeCC
Q psy11350        252 PSGRFLGTC-CWDHSWRL-----DT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DH--SWRLWDLNQGQEVLHQEGH  321 (471)
Q Consensus       252 ~~~~~i~~~-~~d~~~~~-----~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~  321 (471)
                      |||+.|+.. +.++...+     .. ....+..+ ........|+|+|++|+..+. ++  .|.++|+.+++.... ...
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~  348 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE  348 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC
Confidence            999988754 55554222     11 12222222 234567899999998877654 33  577788887764332 222


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCC-C--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC-Cc--EEEEECCC
Q psy11350        322 GKPVYCMSFQGDGSVVATGGLD-A--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED-NA--VKIWDLRK  395 (471)
Q Consensus       322 ~~~v~~~~~s~d~~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-g~--i~iwd~~~  395 (471)
                      .......+|+|||++|+..+.+ +  .|.++|+.+++.. .+... .......|+|||+.|+..+.+ |.  +.+++. +
T Consensus       349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~  425 (448)
T PRK04792        349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D  425 (448)
T ss_pred             CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence            2233457899999988776543 3  4667788887643 23222 122345899999988765543 33  667776 4


Q ss_pred             ccchhee
Q psy11350        396 RRLLKWC  402 (471)
Q Consensus       396 ~~~~~~~  402 (471)
                      ++....+
T Consensus       426 G~~~~~l  432 (448)
T PRK04792        426 GRFKARL  432 (448)
T ss_pred             CCceEEC
Confidence            5444444

>KOG1409|consensus

Probab=99.32  E-value=1.6e-10  Score=102.11  Aligned_cols=192  Identities=18%  Similarity=0.300  Sum_probs=138.7

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCC----CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVP----ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+++++.+++....|+.|-.+|++.-+.+.    .....+.+..|..+|..+-|+-...     .+++.+.|..+.---
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-----~V~s~~~dk~~~~hc  142 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-----WVLSTGKDKQFAWHC  142 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-----eEEEeccccceEEEe
Confidence            4678999999999999999999999988764    3445666778999999999988776     689999998876554


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-------ccccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      .+.+..+..+.....  .+++.+.-.  +.+.|...+.+..       -.+...+.+| .+.+.+++|.|....|++|..
T Consensus       143 ~e~~~~lg~Y~~~~~--~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h-~~~~~~l~Wd~~~~~LfSg~~  217 (404)
T KOG1409|consen  143 TESGNRLGGYNFETP--ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGH-TGEVTCLKWDPGQRLLFSGAS  217 (404)
T ss_pred             eccCCcccceEeecc--CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCc-ccceEEEEEcCCCcEEEeccc
Confidence            555544433221110  000111000  3333333333221       1234455666 668999999999999999999


Q ss_pred             CCeEEEEECCCCcE-EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        301 DHSWRLWDLNQGQE-VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       301 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      |..+.+||+.-.+- ...+.+|...|..+..-+--+.+.+++.||.|.+|+++.
T Consensus       218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999975543 456788999999999888888999999999999999863

>KOG1064|consensus

Probab=99.32  E-value=9.8e-12  Score=130.08  Aligned_cols=201  Identities=18%  Similarity=0.285  Sum_probs=155.9

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      +.|-..|.++.=+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+     .+..+..||.+.+|.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-----k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-----KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-----ceeeeccCCceeecc
Confidence            3455677888888988999999999999999998888887776 2348899999999998     588889999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE---ecCCeE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC---CWDHSW  304 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---~~dg~i  304 (471)
                      +. .++....+.|..                                       ....+.|-.  ..++++   +.++.+
T Consensus      2280 ~~-pk~~~s~qchnk---------------------------------------~~~Df~Fi~--s~~~tag~s~d~~n~ 2317 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNK---------------------------------------ALSDFRFIG--SLLATAGRSSDNRNV 2317 (2439)
T ss_pred             cC-CcceeccccCCc---------------------------------------cccceeeee--hhhhccccCCCCCcc
Confidence            75 444444444443                                       234444433  344444   346789


Q ss_pred             EEEECCCCc-EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        305 RLWDLNQGQ-EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       305 ~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      .+||.--.. .-..-..|.+.++++++-|..++|++||.+|.|++||++..+.+++++.         +. ...+|++|+
T Consensus      2318 ~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s 2387 (2439)
T KOG1064|consen 2318 CLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS 2387 (2439)
T ss_pred             cchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC
Confidence            999964321 1122278999999999999999999999999999999998887766654         44 567999999


Q ss_pred             CCCcEEEEECCCccchheecccC
Q psy11350        384 EDNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                      ..|.++||++....++++++..+
T Consensus      2388 s~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             cccceEEEEccccchhhcCchhh
Confidence            99999999999999998887544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.32  E-value=1.2e-09  Score=101.35  Aligned_cols=302  Identities=14%  Similarity=0.147  Sum_probs=187.2

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC---------
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG---------  221 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg---------  221 (471)
                      -.-++..++|||.|.+|++.. -..|.+|..+.+..+..+.  ...|..+.|+|.+.     +|.+-+..+         
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~k-----YL~tw~~~pi~~pe~e~s  102 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEK-----YLVTWSREPIIEPEIEIS  102 (561)
T ss_pred             cCcchhheeecCcchheehhh-ccceEEccccchhheeeee--cCCceecccCcccc-----eeeeeccCCccChhhccC
Confidence            455788999999999999887 4568899988766555554  35789999999998     687765443         


Q ss_pred             ------cEEEEeCCCCcceeeecCCCCc-ceE-EEEECCCCCEEEEEeCCCeEEeccccccc-----cCCCCcceEEEEE
Q psy11350        222 ------SVKLWSLDKDTPLANLEGHEPF-RVS-RIKFHPSGRFLGTCCWDHSWRLDTPLANL-----EGHEPFRVSRIKF  288 (471)
Q Consensus       222 ------~i~iwd~~~~~~~~~~~~~~~~-~v~-~~~~s~~~~~i~~~~~d~~~~~~~~~~~~-----~~~~~~~v~~l~~  288 (471)
                            .+.+||+.+|..+..+...... ..+ -+.|+.+.++.+-...+. +.+......+     ..-....|....|
T Consensus       103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s-l~i~e~t~n~~~~p~~~lr~~gi~dFsi  181 (561)
T COG5354         103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS-LYIHEITDNIEEHPFKNLRPVGILDFSI  181 (561)
T ss_pred             CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe-EEEEecCCccccCchhhccccceeeEEe
Confidence                  4999999999999988876652 133 788888888776543222 2221111111     1111235888999


Q ss_pred             CCCCC--EEEE-----EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-----------CCCeEEEEe
Q psy11350        289 HPSGR--FLGT-----CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG-----------LDAFGRVWD  350 (471)
Q Consensus       289 ~~~~~--~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-----------~dg~i~iwd  350 (471)
                      +|.++  .|+.     .+..+++++|.+..+..+.+-.-....-..+.|.+.|.+|++--           ....++|++
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~  261 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR  261 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence            99643  3443     45678899999987766554332233334688888888766431           235688888


Q ss_pred             CCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccC
Q psy11350        351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS--EDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLN  428 (471)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  428 (471)
                      +....+... ..-.++|..++|.|.++.+++++  .+-.+.++|++.+ +...++....+.   +.++...++.++...+
T Consensus       262 ~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT---~~fsp~~r~il~agF~  336 (561)
T COG5354         262 ITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNT---IFFSPHERYILFAGFD  336 (561)
T ss_pred             eccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCccccc---ccccCcccEEEEecCC
Confidence            874433322 25678999999999887766554  7788999999876 444443322221   1112223333333333


Q ss_pred             CCcccccchhhhcccccc-eee-ecccceeeeecCCeEEE
Q psy11350        429 PGIGNIISSALKEQVEPI-PLL-LDIQKLTFKFDSDLHAM  466 (471)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~l~fs~dg~~lA~  466 (471)
                      .-.+.+..-........+ .+. ...+...|||||+++-+
T Consensus       337 nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~  376 (561)
T COG5354         337 NLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDT  376 (561)
T ss_pred             ccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEe
Confidence            322222221222222233 222 23455668899887654

>KOG1064|consensus

Probab=99.31  E-value=3e-11  Score=126.58  Aligned_cols=196  Identities=20%  Similarity=0.261  Sum_probs=159.3

Q ss_pred             cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc
Q psy11350        192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP  271 (471)
Q Consensus       192 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~  271 (471)
                      .+-..|.++.-+|...     +.+||+.||.+++|....++.+..+....                              
T Consensus      2206 ~~v~~v~r~~sHp~~~-----~Yltgs~dgsv~~~~w~~~~~v~~~rt~g------------------------------ 2250 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-----YYLTGSQDGSVRMFEWGHGQQVVCFRTAG------------------------------ 2250 (2439)
T ss_pred             cccCceeeecCCCCCc-----eEEecCCCceEEEEeccCCCeEEEeeccC------------------------------
Confidence            3456677888888877     78999999999999988887766655332                              


Q ss_pred             cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEE
Q psy11350        272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRV  348 (471)
Q Consensus       272 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~i  348 (471)
                              +..|+.+.|+.+|+.+.++..||.+.+|... .++....+.|....+.+.|-.  ..+++++   .++.+.+
T Consensus      2251 --------~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~l 2319 (2439)
T KOG1064|consen 2251 --------NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCL 2319 (2439)
T ss_pred             --------cchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccc
Confidence                    2368899999999999999999999999987 567778888999999999975  6677765   4678999


Q ss_pred             EeCCCC---eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeec
Q psy11350        349 WDLRTG---RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       349 wd~~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  425 (471)
                      ||.--.   .++.  ..|.+.++++++.|..+.|++||.+|.|++||++..+++++++... ..-.++.....+++.+|.
T Consensus      2320 wDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2320 WDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQALD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             hhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhhh-hhheeeccCcccceEEEE
Confidence            996432   2333  6799999999999999999999999999999999999999988766 556677777888899998


Q ss_pred             ccCCCcccccc
Q psy11350        426 SLNPGIGNIIS  436 (471)
Q Consensus       426 ~~~~~~~~~~~  436 (471)
                      ....+..+.+.
T Consensus      2397 ~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2397 LSEFGLLHTFP 2407 (2439)
T ss_pred             ccccchhhcCc
Confidence            88776544443

>KOG4190|consensus

Probab=99.30  E-value=6.3e-12  Score=117.20  Aligned_cols=211  Identities=19%  Similarity=0.250  Sum_probs=157.0

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC-------CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP-------ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      .+.+.||+..|..++--.+.+-+++++.|.+|++|.++       +..+..+++.|+.+|..+.|..+..     ++++ 
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-----~i~S-  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-----SIAS-  801 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-----eeee-
Confidence            46778999999998877778889999999999999985       2346678889999999999998876     4554 


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC--CCCEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP--SGRFL  295 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l  295 (471)
                       .||-|.+||.--++++........                                     .+.+..+..-+  +...+
T Consensus       802 -cD~giHlWDPFigr~Laq~~dapk-------------------------------------~~a~~~ikcl~nv~~~il  843 (1034)
T KOG4190|consen  802 -CDGGIHLWDPFIGRLLAQMEDAPK-------------------------------------EGAGGNIKCLENVDRHIL  843 (1034)
T ss_pred             -ccCcceeecccccchhHhhhcCcc-------------------------------------cCCCceeEecccCcchhe
Confidence             489999999877766654332111                                     11122222223  23333


Q ss_pred             E-EEecCCeEEEEECCCCcEEEEee-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEE
Q psy11350        296 G-TCCWDHSWRLWDLNQGQEVLHQE-----GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS  369 (471)
Q Consensus       296 ~-~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  369 (471)
                      + .++...+|+++|.+.++....+.     +...-+.+++..+.|+.++++-..|.|.+.|.++|+.+..+....-....
T Consensus       844 iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq  923 (1034)
T KOG4190|consen  844 IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ  923 (1034)
T ss_pred             eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh
Confidence            3 34778999999999887655543     44566889999999999999999999999999999998887765555555


Q ss_pred             EEEcCCCCEEEEEeCCCcEEE-EECCCccchh
Q psy11350        370 VDFSPDGYHLATGSEDNAVKI-WDLRKRRLLK  400 (471)
Q Consensus       370 ~~~sp~~~~l~s~s~dg~i~i-wd~~~~~~~~  400 (471)
                      ++- |..+.|+....|.++.+ |..-.+....
T Consensus       924 laa-psdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  924 LAA-PSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             hcC-chhHHHHhhcccceeEeeehhcCCeeee
Confidence            543 55577888888889988 8876665443

>KOG1409|consensus

Probab=99.30  E-value=1.3e-10  Score=102.62  Aligned_cols=248  Identities=18%  Similarity=0.277  Sum_probs=180.1

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP-ECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      +.++..+.||...|++...-|-..-+++.+.|.+++||--. .++.-..+. .-..+++++.+.+...     .|+.|-.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-----~L~vg~~   88 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-----RLYVGQD   88 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-----EEEEEEe
Confidence            34455667999999999988988899999999999999643 333322222 2357788999998877     6888889


Q ss_pred             CCcEEEEeCC----CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec--cccccccCCC-CcceEEEEECCCC
Q psy11350        220 DGSVKLWSLD----KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD--TPLANLEGHE-PFRVSRIKFHPSG  292 (471)
Q Consensus       220 dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~--~~~~~~~~~~-~~~v~~l~~~~~~  292 (471)
                      .|++.-+.+.    .....+....|.. .+..+.|+.....+++.+.|..+...  .....+.+.. ....+++.+.-. 
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-  166 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-  166 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhc-ceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-
Confidence            9999888764    3334444555554 89999999999999999998874431  1111111110 000111111111 


Q ss_pred             CEEEEEecCCeEEEEEC--CCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe-eEEEecccCcCEEE
Q psy11350        293 RFLGTCCWDHSWRLWDL--NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFS  369 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~  369 (471)
                       +...|...|.|.+..+  ....++.++.+|.+++++++|.|...+|++|..|..+.+||+--.+ ....+.+|...|..
T Consensus       167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~  245 (404)
T KOG1409|consen  167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA  245 (404)
T ss_pred             -EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence             4556666666655544  3446788899999999999999999999999999999999986543 34577899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        370 VDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       370 ~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +...+--+.+++++.||.|.+|+.+..+
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEecccee
Confidence            9988888999999999999999997654

>KOG1334|consensus

Probab=99.29  E-value=3.7e-11  Score=110.59  Aligned_cols=247  Identities=22%  Similarity=0.215  Sum_probs=174.0

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCC--CCEEEEEeC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPS--GRFLGTCCW  262 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~  262 (471)
                      .....+..|.+.|..|.|+..+.     .|++|+.|..|.+||...+.....+...+...|....|-|.  ...+++++.
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd-----~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGD-----VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhhhcccCCCCccceeeecccCc-----eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence            34556789999999999999998     79999999999999999999988888666557777778775  468999999


Q ss_pred             CCeEEeccc--------cccccCCCCcceEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEe---eCCCC---CeEE
Q psy11350        263 DHSWRLDTP--------LANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQGQEVLHQ---EGHGK---PVYC  327 (471)
Q Consensus       263 d~~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~---~v~~  327 (471)
                      ||.++....        ...+..| .++|..++.-|+.. -|.+++.|+.+.-+|++++.+...+   ..+..   ..++
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h-~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~  286 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPH-EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT  286 (559)
T ss_pred             cCceeeeeeccccceecceecccc-cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence            999777322        1222333 66799999999654 6889999999999999987554332   23333   5778


Q ss_pred             EEEeCC-CCEEEEEeCCCeEEEEeCCCCe------eEEEeccc------CcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        328 MSFQGD-GSVVATGGLDAFGRVWDLRTGR------CIMFLEGH------LKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       328 ~~~s~d-~~~l~t~~~dg~i~iwd~~~~~------~~~~~~~h------~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ++..|. ...+++|+.|..+++||.+.-.      .+..+..|      .-.|++++|+.++.-|.++-.|-.|+++.-.
T Consensus       287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            999994 4589999999999999987432      12222222      2358999999776666666677788888432


Q ss_pred             Cccc------------hhe-eccc------------CCCccceeeccccceeeeecccCCCcccccch
Q psy11350        395 KRRL------------LKW-CTQL------------LPNSIGVTSLLTDLYIDVLESLNPGIGNIISS  437 (471)
Q Consensus       395 ~~~~------------~~~-~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  437 (471)
                      .+.-            ++. +..+            .|..-.+++.+.-+.|.+|+-....+..++.+
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg  434 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG  434 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence            2211            111 1112            22334566666667777887776665554443

>KOG0280|consensus

Probab=99.29  E-value=1.4e-10  Score=100.35  Aligned_cols=198  Identities=17%  Similarity=0.196  Sum_probs=138.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE--EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC-
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELV--QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD-  231 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-  231 (471)
                      -.++.|++.+..++++..+|.+.+-+...+...  +.++.|.-+++...|+...++    ++++|+.|+.+..||++.. 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn----lvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN----LVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc----eEEecCCCceEEEEEecCCc
Confidence            346788999999999999999997665555444  478899999999999987776    8999999999999999732 


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecCCeEEEEECC
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~  310 (471)
                      +.+..-.                                     ..| ...|.+|.-+| .+.++++|+.|-.|++||.+
T Consensus       200 ~~i~~n~-------------------------------------kvH-~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  200 TFIWHNS-------------------------------------KVH-TSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             ceeeecc-------------------------------------eee-ecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            2222100                                     111 33577787776 57799999999999999999


Q ss_pred             CC-cEEEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCC--e---eEEEecccCcCEEEEEEcCCCCEEEEE
Q psy11350        311 QG-QEVLHQEGHGKPVYCMSFQGD--GSVVATGGLDAFGRVWDLRTG--R---CIMFLEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       311 ~~-~~~~~~~~~~~~v~~~~~s~d--~~~l~t~~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      .. +++..- .-.+.|..+.++|.  +.+|+++ +-+-.+|-+...+  +   .......|.+-.+.-.|..-...|+||
T Consensus       242 nm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC  319 (339)
T KOG0280|consen  242 NMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC  319 (339)
T ss_pred             cccCccccC-ccccceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence            54 444332 34588999999993  3344444 4444677766543  2   344556777777777885544578886


Q ss_pred             e-CCCcEE-EEECCCc
Q psy11350        383 S-EDNAVK-IWDLRKR  396 (471)
Q Consensus       383 s-~dg~i~-iwd~~~~  396 (471)
                      + .|+.++ +|-.-++
T Consensus       320 sFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  320 SFYDKKIRQLWLHITG  335 (339)
T ss_pred             eccccceeeeeeeccC
Confidence            5 455544 6654433

>KOG1912|consensus

Probab=99.25  E-value=9.5e-09  Score=100.10  Aligned_cols=203  Identities=12%  Similarity=0.097  Sum_probs=141.7

Q ss_pred             eeecCCcCeEEEEEecCC------------CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        147 SQVGDTRPISYCSFSPDS------------QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~------------~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      ++.-|...|+.+.|.|-.            -+||++...|.|.+||...+..+..+..|..++..++|.+.....-. +|
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd-~L  128 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD-VL  128 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh-ee
Confidence            344588999999998731            25778888899999999999999999999999999999987654322 56


Q ss_pred             EEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCC-CCEEEEEeCCCe------------------EEeccccccc
Q psy11350        215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHS------------------WRLDTPLANL  275 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~i~~~~~d~~------------------~~~~~~~~~~  275 (471)
                      +.-....+|.+|+..+|+.......... ...|+.+.|- .+++..-+..|.                  +.+.++...+
T Consensus       129 laIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl  207 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL  207 (1062)
T ss_pred             EEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence            6666678999999999998887776554 6677888773 333333333332                  2221110000


Q ss_pred             ----------cCC--CCc------ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC--
Q psy11350        276 ----------EGH--EPF------RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS--  335 (471)
Q Consensus       276 ----------~~~--~~~------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~--  335 (471)
                                ..+  .+.      ....++|+|.-+.++.......+.++|++-..++....-..+.+.-+.+-|+++  
T Consensus       208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd  287 (1062)
T KOG1912|consen  208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD  287 (1062)
T ss_pred             hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence                      000  000      022467888777777777788999999998888877766666666677777654  


Q ss_pred             EEEEEeCCCeEEEEeC
Q psy11350        336 VVATGGLDAFGRVWDL  351 (471)
Q Consensus       336 ~l~t~~~dg~i~iwd~  351 (471)
                      .|++.-.||.+.+|-.
T Consensus       288 ~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  288 ALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             eEEEEecCCeEEEEEe
Confidence            6888888998888843

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=1.2e-08  Score=109.55  Aligned_cols=237  Identities=13%  Similarity=0.096  Sum_probs=151.5

Q ss_pred             EEEEEecC-CCEEEEEeCCCcEEEEeCCCCceEEEeec-C-------------CCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        156 SYCSFSPD-SQHVATASWSGLCKLWTVPECELVQTFRG-H-------------DCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       156 ~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h-------------~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      ..++++++ +.++++-+.++.|.+||.. +..+..+.+ .             -.....|++.+++..    ++++-...
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~----LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL----LYVADTEN  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE----EEEEeCCC
Confidence            45788875 5566666678899999975 554444332 1             112468899887762    33444456


Q ss_pred             CcEEEEeCCCCcceeeecCC----------C------CcceEEEEECCC-CCEEEEEeCCCeEEecccc----ccc----
Q psy11350        221 GSVKLWSLDKDTPLANLEGH----------E------PFRVSRIKFHPS-GRFLGTCCWDHSWRLDTPL----ANL----  275 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~----------~------~~~v~~~~~s~~-~~~i~~~~~d~~~~~~~~~----~~~----  275 (471)
                      +.|+++|+.++. +.++.+.          .      -.....++++|+ +..+++.+.++.+......    ..+    
T Consensus       646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G  724 (1057)
T PLN02919        646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDG  724 (1057)
T ss_pred             ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCC
Confidence            789999986653 3332210          0      113468999995 4455555555554332110    000    


Q ss_pred             -----cCC-----CCcceEEEEECCCCCEEEE-EecCCeEEEEECCCCcEEEEeeC-------------C--------CC
Q psy11350        276 -----EGH-----EPFRVSRIKFHPSGRFLGT-CCWDHSWRLWDLNQGQEVLHQEG-------------H--------GK  323 (471)
Q Consensus       276 -----~~~-----~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~-------------~--------~~  323 (471)
                           .+.     .-.....|+++|+++.|++ -+.++.|++||+.++.......+             +        -.
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                 000     0123567999999985554 45568999999987653211100             0        01


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-------------ccCcCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy11350        324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-------------GHLKSVFSVDFSPDGYHLATGSEDNAVKI  390 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~sp~~~~l~s~s~dg~i~i  390 (471)
                      ....++++++|.++++-..++.|++||..++.......             +.-.....|+++++|+++++-+.++.|++
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            23588999999998888899999999998876543221             11235788999999999999999999999


Q ss_pred             EECCCccc
Q psy11350        391 WDLRKRRL  398 (471)
Q Consensus       391 wd~~~~~~  398 (471)
                      ||+.+++.
T Consensus       885 id~~~~~~  892 (1057)
T PLN02919        885 LDLNKGEA  892 (1057)
T ss_pred             EECCCCcc
Confidence            99998875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=5.2e-08  Score=92.75  Aligned_cols=218  Identities=18%  Similarity=0.224  Sum_probs=139.3

Q ss_pred             CCcCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC-CceEEE---ee----------cCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASW-SGLCKLWTVPE-CELVQT---FR----------GHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~-dg~i~iwd~~~-~~~~~~---~~----------~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      .......++++|++++|+++.. +|.|.++++.. +.....   +.          .......++.|+|+++.    +++
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~----v~v  160 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF----VYV  160 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE----EEE
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE----EEE
Confidence            3445567899999999998874 89999999976 443332   21          12355789999999983    334


Q ss_pred             EEeCCCcEEEEeCCCCc--c--eeeecCCCCcceEEEEECCCCCEEEEEeCCCe-EE---ec---------cccccccC-
Q psy11350        216 SCAQDGSVKLWSLDKDT--P--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WR---LD---------TPLANLEG-  277 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-~~---~~---------~~~~~~~~-  277 (471)
                      +.-....|.+|++....  .  ...+..........+.|+|+++++++...... +.   +.         .....+.. 
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            44445679999987654  2  23445555567899999999998877764432 22   21         11111111 


Q ss_pred             -CCCcceEEEEECCCCCEEEEEec-CCeEEEEECC--CCc--EEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEe
Q psy11350        278 -HEPFRVSRIKFHPSGRFLGTCCW-DHSWRLWDLN--QGQ--EVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWD  350 (471)
Q Consensus       278 -~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd  350 (471)
                       ........|.++|+|++|+++.. .++|.+|++.  +++  .+..+.........++++|+|++|+++. .++.|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence             11125789999999999888764 5689999993  333  3333443345578999999999988877 567899986


Q ss_pred             C--CCCeeEEEec-ccCcCEEEEEE
Q psy11350        351 L--RTGRCIMFLE-GHLKSVFSVDF  372 (471)
Q Consensus       351 ~--~~~~~~~~~~-~h~~~v~~~~~  372 (471)
                      +  .+|.....-. .......||.|
T Consensus       321 ~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  321 IDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EeCCCCcEEEecccccCCCCEEEeC
Confidence            6  5665443321 23355677765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=2.1e-10  Score=99.96  Aligned_cols=237  Identities=17%  Similarity=0.284  Sum_probs=152.8

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----eEEEeecCC------------CCEEEEEEeeCCCCCCccE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-----LVQTFRGHD------------CNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~~~~~~~  213 (471)
                      ....|+++.|...|.||++|...|.|.+|.-....     ....|++|.            ..|..|.|..++..   .-
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r---~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR---NH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc---ce
Confidence            35679999999999999999999999999754322     223355553            46788999876542   13


Q ss_pred             EEEEeCCCcEEEEeCCCCccee--------eecCCCCcceEEE------EECCCCCEEEEEeCCCeEEeccccccccCCC
Q psy11350        214 LASCAQDGSVKLWSLDKDTPLA--------NLEGHEPFRVSRI------KFHPSGRFLGTCCWDHSWRLDTPLANLEGHE  279 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~------~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~  279 (471)
                      ++..+.|.+|++|.+.......        .+....+.++++.      ..+....+++          ..+.+.+...+
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia----------a~p~rvyaNaH  171 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA----------AKPCRVYANAH  171 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE----------eccceeccccc
Confidence            6667789999999985432111        1111111111110      1111111221          13344443334


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE---EEEeeCCC-----CCeEEEEEeCC-CCEEEEEeCCCeEEEEe
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE---VLHQEGHG-----KPVYCMSFQGD-GSVVATGGLDAFGRVWD  350 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~v~~~~~s~d-~~~l~t~~~dg~i~iwd  350 (471)
                      +.-+.++.|+.+...++++. |=.|.+|++.-...   +..+.+|.     .-|++..|+|. ...+...+..|.|++-|
T Consensus       172 ~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         172 PYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND  250 (460)
T ss_pred             eeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence            67799999999988887765 77899999874322   23344554     35788999994 45677778899999999


Q ss_pred             CCCCe------eEE--E--------ecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-cchhee
Q psy11350        351 LRTGR------CIM--F--------LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR-RLLKWC  402 (471)
Q Consensus       351 ~~~~~------~~~--~--------~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~  402 (471)
                      ++...      .+.  +        +.+-...|..+.|+++|+++++-+. -+|+|||.+.. .+++++
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            98321      111  1        1122357889999999999988654 58999999854 566665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=2.2e-08  Score=105.73  Aligned_cols=304  Identities=15%  Similarity=0.170  Sum_probs=187.1

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEE----eCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLW----TVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iw----d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ....|.++.|-++...|+.+..+|.|.+.    +..+.. +...-.-...|.+++|+|+..     +|+..+.++++.+.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E-----lla~vT~~~~l~~m  147 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEE-----LLALVTGEGNLLLM  147 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcC-----EEEEEeCCCEEEEE
Confidence            45789999999999999999999999999    554432 222223367899999999998     78888888888775


Q ss_pred             eCC---------------C--------CcceeeecCC-----------------------CCcceEEEEECCCCCEEEEE
Q psy11350        227 SLD---------------K--------DTPLANLEGH-----------------------EPFRVSRIKFHPSGRFLGTC  260 (471)
Q Consensus       227 d~~---------------~--------~~~~~~~~~~-----------------------~~~~v~~~~~s~~~~~i~~~  260 (471)
                      +-.               .        |+....|.+.                       .+..-..++|-.||.++++.
T Consensus       148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence            421               0        0111111110                       11134678899999999998


Q ss_pred             eC---CC---eEEeccccccccCC---CCcceEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEE----eeCCCCC
Q psy11350        261 CW---DH---SWRLDTPLANLEGH---EPFRVSRIKFHPSGRFLGTCCW---DHSWRLWDLNQGQEVLH----QEGHGKP  324 (471)
Q Consensus       261 ~~---d~---~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~----~~~~~~~  324 (471)
                      +.   .+   .++++.....+...   ..+--.+++|.|.|++||+...   ...|.+|.- +|-.-..    +......
T Consensus       228 s~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~  306 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEK  306 (928)
T ss_pred             EEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCce
Confidence            75   33   25665544333322   1222347899999999998765   345666663 3322222    2245678


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE--EEec-ccCcCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCccchh
Q psy11350        325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI--MFLE-GHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      |..+.|++|+..|+....|. |.+|-..+-.-.  +.+. .....+..+.|+|. ...|...+.+|.+..+++.-.-.. 
T Consensus       307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~-  384 (928)
T PF04762_consen  307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR-  384 (928)
T ss_pred             eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe-
Confidence            99999999999999977555 999987765321  1222 12334556999994 566777777788776665322111 


Q ss_pred             eecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        401 WCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       401 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                       -....+...+.+.+.....+.+.......+..    ++  -...+.+...+..++|++++..+|++..+
T Consensus       385 -s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP----PM--s~~~l~~~~~v~~vaf~~~~~~~avl~~d  447 (928)
T PF04762_consen  385 -SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP----PM--SSYELELPSPVNDVAFSPSNSRFAVLTSD  447 (928)
T ss_pred             -cCCCCccCceEEEEEeCCeEEEecccccCCCc----hH--hceEEcCCCCcEEEEEeCCCCeEEEEECC
Confidence             11223334455555544444433322211111    00  01233444578899999998877776543

>KOG0974|consensus

Probab=99.20  E-value=9.4e-10  Score=110.37  Aligned_cols=141  Identities=16%  Similarity=0.225  Sum_probs=109.7

Q ss_pred             EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE-Eeccc
Q psy11350        285 RIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM-FLEGH  363 (471)
Q Consensus       285 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~h  363 (471)
                      -+.++++.-++++|+.-+.|.+|+....+....+.+|.+.+.++.|+.||.++++.+.|.++++|++.+.+... +..+|
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence            34456677789999999999999988544444688999999999999999999999999999999999987665 66789


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCc----------cceeeccccceeeeecccC
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNS----------IGVTSLLTDLYIDVLESLN  428 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~  428 (471)
                      ...|..+.|.|+  .++|++.|.+.++|+.. +..+..+..+....          ...++...|..+.+|....
T Consensus       218 saRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  218 SARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999998  89999999999999654 33333444444333          3334444555555555443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.20  E-value=3.8e-08  Score=91.64  Aligned_cols=252  Identities=12%  Similarity=-0.017  Sum_probs=151.5

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe---------CCCcEEEEeCCCCcceeeecCCCCcc
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA---------QDGSVKLWSLDKDTPLANLEGHEPFR  244 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~  244 (471)
                      ++|.+.|..+++.+.++..-..+- .+ ++|+++.    +.++.+         .+..|.+||..+.+.+..+.....  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~----lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~--   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSF----FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG--   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCE----EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC--
Confidence            899999999999999887544443 34 9999884    344444         588999999999998887765332  


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-c-CCeEEEEECCCCcEEEEeeCCC
Q psy11350        245 VSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-W-DHSWRLWDLNQGQEVLHQEGHG  322 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~  322 (471)
                                                +... .   ......++++|+|++|++.. . +..|.++|+.+++.+..+.-..
T Consensus        99 --------------------------p~~~-~---~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658        99 --------------------------PRFL-V---GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             --------------------------chhh-c---cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence                                      0000 0   11245788999999998776 3 6889999999999888776422


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-Cee-EE---EecccCcCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCC
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-GRC-IM---FLEGHLKSVFS-VDFSP-DGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-~~~-~~---~~~~h~~~v~~-~~~sp-~~~~l~s~s~dg~i~iwd~~~  395 (471)
                       ...-...+.+..++.  +.||......+.+ |+. ..   .+.+-..++.. -.|.+ +|++++.... |+|.+.|+..
T Consensus       149 -~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~  224 (352)
T TIGR02658       149 -CYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSS  224 (352)
T ss_pred             -CcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCC
Confidence             111222222222211  2344333322221 111 11   11110011000 04455 8888877665 9999999543


Q ss_pred             -----ccchheec------ccCCCccceeeccccceeeee-cccCC--------Ccccccchhhhcccccceeeecccce
Q psy11350        396 -----RRLLKWCT------QLLPNSIGVTSLLTDLYIDVL-ESLNP--------GIGNIISSALKEQVEPIPLLLDIQKL  455 (471)
Q Consensus       396 -----~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l  455 (471)
                           .+.+..+.      ...|.....+++..+....++ .....        +..-++.......+..++.......+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~i  304 (352)
T TIGR02658       225 GDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSI  304 (352)
T ss_pred             CcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeE
Confidence                 33333322      234555555777766544444 43211        23345666777777888888889999


Q ss_pred             eeeecCC-eEEEe
Q psy11350        456 TFKFDSD-LHAMV  467 (471)
Q Consensus       456 ~fs~dg~-~lA~~  467 (471)
                      +|+|||+ +|.+.
T Consensus       305 avS~Dgkp~lyvt  317 (352)
T TIGR02658       305 NVSQDAKPLLYAL  317 (352)
T ss_pred             EECCCCCeEEEEe
Confidence            9999999 55543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041|consensus

Probab=99.18  E-value=9.6e-10  Score=105.88  Aligned_cols=225  Identities=12%  Similarity=0.146  Sum_probs=166.0

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---------------ceEEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC---------------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      ......|++|+....++|.|+.||.++|..+.+.               ..-+++.||+..|..+.|+....     .|-
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-----KLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-----KLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-----ccc
Confidence            3456789999999999999999999999987542               12346779999999999999887     588


Q ss_pred             EEeCCCcEEEEeCCCCcceeeec-CCCCcceEEEEECCCCCEEEEEeCCCeEEecccc------ccccCCCCcceEEEEE
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLE-GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL------ANLEGHEPFRVSRIKF  288 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~------~~~~~~~~~~v~~l~~  288 (471)
                      +...+|.|.+|-+-.|+-..... ......|.+++|..+|..|.....||.+.+.+..      ..+.+.   ....+.|
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~w  164 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLW  164 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceee
Confidence            99999999999988877555433 3344579999999999999999999987664321      122222   3567899


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCC-------cEEEE----eeCCCCCeEEEEEe--------CCCCEEEEEeCCCeEEEE
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQG-------QEVLH----QEGHGKPVYCMSFQ--------GDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~----~~~~~~~v~~~~~s--------~d~~~l~t~~~dg~i~iw  349 (471)
                      ++|.+.++.+-.+|.+.+||.+..       .+...    +......+..+.|.        ||...|+++-..|.+.|.
T Consensus       165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            999999888888999999997632       11111    11122235555553        467789999999998887


Q ss_pred             eCCCC-eeEEEecccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        350 DLRTG-RCIMFLEGHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       350 d~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                      .-.+. .++ .+. ..-.+....|+++|..|+.++.+
T Consensus       245 R~eND~~Pv-v~d-tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  245 RSENDPEPV-VVD-TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hhcCCCCCe-EEe-cccEeecceecCCCcEEEEccCc
Confidence            54433 333 332 22578899999999999999865

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.16  E-value=1.4e-08  Score=94.55  Aligned_cols=239  Identities=17%  Similarity=0.236  Sum_probs=152.8

Q ss_pred             cCeEEEEEecCCCEEEEEeCC---------------CcEEEEeCCCCceEEEeecCC-----------------------
Q psy11350        153 RPISYCSFSPDSQHVATASWS---------------GLCKLWTVPECELVQTFRGHD-----------------------  194 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~d---------------g~i~iwd~~~~~~~~~~~~h~-----------------------  194 (471)
                      ..|..+.|||.++||.+-+..               ..+.+||+.+|..+..+....                       
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            468888999999999997643               359999998877665543211                       


Q ss_pred             ----------------------CCEEEEEEeeCCCCCCccEEE--EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        195 ----------------------CNVGAIEFHPLPSEGAVCSLA--SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       195 ----------------------~~v~~l~~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                                            ..|....|+|.+++...+++.  ..+.++++++|.+..+..+.+-..... .-..+.|
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-~~~qLkW  230 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-SGVQLKW  230 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-cccEEEE
Confidence                                  345556666665432222222  145567788888765554443222111 3346788


Q ss_pred             CCCCCEEEEEeCCCe-----------EE---eccccccccCCCCcceEEEEECCCCCEEEEEe--cCCeEEEEECCCCcE
Q psy11350        251 HPSGRFLGTCCWDHS-----------WR---LDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC--WDHSWRLWDLNQGQE  314 (471)
Q Consensus       251 s~~~~~i~~~~~d~~-----------~~---~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~  314 (471)
                      .+.|+++.+-..-..           +.   +............++|...+|.|.++.|++.+  .+..+.++|++.. .
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l  309 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L  309 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence            899988765422111           11   11111111112256899999999888776654  6788999999875 3


Q ss_pred             EEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCee-EEEecccCcCEEEEEEcCCCCEEEEEe------C
Q psy11350        315 VLHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGS------E  384 (471)
Q Consensus       315 ~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s------~  384 (471)
                      .  +.....+=+.+.|+|.+++++.++.|   |.|.+||...... +..+.+.  ...-+.|+||+.++.+..      .
T Consensus       310 ~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~  385 (561)
T COG5354         310 R--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRV  385 (561)
T ss_pred             E--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCccccc
Confidence            2  23344555678899999999998765   6799999766533 3355543  345568999999887764      4


Q ss_pred             CCcEEEEECCCcc
Q psy11350        385 DNAVKIWDLRKRR  397 (471)
Q Consensus       385 dg~i~iwd~~~~~  397 (471)
                      |+.|.|||+....
T Consensus       386 Dn~i~l~~v~g~~  398 (561)
T COG5354         386 DNSIKLWDVYGAK  398 (561)
T ss_pred             CcceEEEEecCch
Confidence            7889999986544

>KOG4547|consensus

Probab=99.16  E-value=5.2e-09  Score=99.09  Aligned_cols=146  Identities=22%  Similarity=0.274  Sum_probs=124.1

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecC
Q psy11350        162 PDSQHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG  239 (471)
Q Consensus       162 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  239 (471)
                      .|-..++-|...|.|.+|++..|+....+.  .|.++|.++.++..-.     .|.+++.|+.+..|+...++.+..+..
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-----ciyS~~ad~~v~~~~~~~~~~~~~~~~  142 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-----CIYSVGADLKVVYILEKEKVIIRIWKE  142 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-----ceEecCCceeEEEEecccceeeeeecc
Confidence            355678889999999999999999888876  6999999999988776     699999999999999998887777765


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE  319 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  319 (471)
                      ...                                       .+.+++.+|||..+++++  +.|++||+++++.+..|.
T Consensus       143 ~~~---------------------------------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  143 QKP---------------------------------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             CCC---------------------------------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec
Confidence            543                                       478899999999999887  789999999999999999


Q ss_pred             CCCCCeEEEEEeCC-----CCEEEEE-eCCCeEEEEeCCC
Q psy11350        320 GHGKPVYCMSFQGD-----GSVVATG-GLDAFGRVWDLRT  353 (471)
Q Consensus       320 ~~~~~v~~~~~s~d-----~~~l~t~-~~dg~i~iwd~~~  353 (471)
                      +|.++|.++.|.-+     |.+++++ ..+..+.+|-+..
T Consensus       182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99999999999876     6666654 3455677886554

>KOG4532|consensus

Probab=99.15  E-value=1e-08  Score=87.91  Aligned_cols=235  Identities=11%  Similarity=0.037  Sum_probs=152.6

Q ss_pred             EEEEec-----CCCEEEEEeCCCcEEEEeCCCCceEE-EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        157 YCSFSP-----DSQHVATASWSGLCKLWTVPECELVQ-TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       157 ~~~~s~-----~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      .+.|.|     ...+||.|+..|...+|...+.+... ....|...|+-+.=.-+...    -+..++.|.++++.++..
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~----~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF----PLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc----ceeeccCCcceeEEEEec
Confidence            455655     34579999999999999987654332 22234333322211111111    367788899999988865


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-------ccccccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-------PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      +.......... ..+.++.+++++++.++.+....+-...       ............-.+..|+.....+|+++.||+
T Consensus       148 ~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~  226 (344)
T KOG4532|consen  148 DSNKFAVHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT  226 (344)
T ss_pred             Ccccceeeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence            43332222221 2588999999999999988776633311       111122222334567889999999999999999


Q ss_pred             EEEEECCCCcEEEE-----eeCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCeeEEEec-------ccC-cCEE
Q psy11350        304 WRLWDLNQGQEVLH-----QEGHGKPVYCMSFQGDGS--VVATGGLDAFGRVWDLRTGRCIMFLE-------GHL-KSVF  368 (471)
Q Consensus       304 i~iwd~~~~~~~~~-----~~~~~~~v~~~~~s~d~~--~l~t~~~dg~i~iwd~~~~~~~~~~~-------~h~-~~v~  368 (471)
                      +.|||++.......     -..|.+.+..+.|++-|.  +|+..-.-+.+.+.|+++++..+.+.       .|. ..|.
T Consensus       227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if  306 (344)
T KOG4532|consen  227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF  306 (344)
T ss_pred             EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc
Confidence            99999987644322     235889999999998553  56666667889999999986554432       233 3377


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      .-.|+.++..+.+.+.+ .+.=|++.+..
T Consensus       307 gt~f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  307 GTNFNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             cccccCCCcccccccch-hhheeeccccc
Confidence            77888777766666554 35567766554

>KOG1354|consensus

Probab=99.13  E-value=1.6e-09  Score=95.80  Aligned_cols=205  Identities=18%  Similarity=0.252  Sum_probs=140.1

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-----ceeeecCCCC-----------cceEEEEECCCCC--
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-----PLANLEGHEP-----------FRVSRIKFHPSGR--  255 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-----------~~v~~~~~s~~~~--  255 (471)
                      ..-|.+|.|...|.     +|++|..+|.|.++.-....     ....++.|.+           ..|..+.|.++++  
T Consensus        25 adiis~vef~~~Ge-----~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE-----RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hcceeeEEeecccc-----eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            45688999999998     79999999999999643221     1223333332           2688899988765  


Q ss_pred             EEEEEeCCCeEEeccc----------------------------------------cccccCCCCcceEEEEECCCCCEE
Q psy11350        256 FLGTCCWDHSWRLDTP----------------------------------------LANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       256 ~i~~~~~d~~~~~~~~----------------------------------------~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      .++..+.|.++.+|..                                        .+.+...++.-|.++.++.|+..+
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence            5677777777544321                                        111111224458899999999888


Q ss_pred             EEEecCCeEEEEECCCCcE---EEEeeCCC-----CCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCee------EEE-
Q psy11350        296 GTCCWDHSWRLWDLNQGQE---VLHQEGHG-----KPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRC------IMF-  359 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~------~~~-  359 (471)
                      +++. |=.|.+|+++--..   +..++++.     .-|++..|+| ..++++-.+..|+|++.|++....      +.. 
T Consensus       180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            8776 78899999874322   22233333     4588899999 456888888999999999984311      111 


Q ss_pred             ---------ecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCccchheeccc
Q psy11350        360 ---------LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL-RKRRLLKWCTQL  405 (471)
Q Consensus       360 ---------~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~  405 (471)
                               +..--..|..+.|+++|+|+++-.. -+|++||+ ...+++.+++.+
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence                     1112246889999999999998643 58999999 566777766544

>KOG3914|consensus

Probab=99.12  E-value=9.6e-10  Score=99.32  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=89.5

Q ss_pred             EEEECCCCCEEEEEe---cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        285 RIKFHPSGRFLGTCC---WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       285 ~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      ++.|..+......+.   ....+.+|....+ +...+-||-.-++.++|+||+++|+++..|..|+|-.....-.+..+.
T Consensus       112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  112 AISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC  190 (390)
T ss_pred             eeeeeeccceEEEEeecCCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence            344444444444443   3445566665553 345566899999999999999999999999999998776655555544


Q ss_pred             -ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        362 -GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       362 -~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                       ||..-|..++.-++ +.|++||.|++|++||+.+|+++.++.
T Consensus       191 lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  191 LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence             79999999999865 679999999999999999999988664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=5.3e-08  Score=94.54  Aligned_cols=193  Identities=12%  Similarity=-0.035  Sum_probs=120.2

Q ss_pred             CeEEEEEecCCCE-EEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC--CcEEEEe
Q psy11350        154 PISYCSFSPDSQH-VATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD--GSVKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~~~~~-l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iwd  227 (471)
                      .+....|||||+. ++..+..   ..|+++|+.+++...... ..+......|+|++..    ++++.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~----la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK----LLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE----EEEEEccCCCcEEEEEE
Confidence            6678999999985 6654433   569999998887655443 4556677899999974    44455444  4566667


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC---CeE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD---HSW  304 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i  304 (471)
                      +.++... .+.....                                       ......|+|||+.|+..+..   ..|
T Consensus       264 l~~g~~~-~LT~~~~---------------------------------------~d~~p~~SPDG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        264 TNTKTLT-QITNYPG---------------------------------------IDVNGNFVEDDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             CCCCcEE-EcccCCC---------------------------------------ccCccEECCCCCEEEEEECCCCCceE
Confidence            7666432 2221111                                       01223577777666555432   268


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC---------CeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD---------AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      .++|+.+++....... ...  ...|+|||+.|+..+..         ..|.+.|+.++... .+... .......|+||
T Consensus       304 y~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPD  378 (419)
T PRK04043        304 FMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSD  378 (419)
T ss_pred             EEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCC
Confidence            8888887765333321 111  24899999988776643         36888898887643 34332 23345889999


Q ss_pred             CCEEEEEeCC-C--cEEEEECCCc
Q psy11350        376 GYHLATGSED-N--AVKIWDLRKR  396 (471)
Q Consensus       376 ~~~l~s~s~d-g--~i~iwd~~~~  396 (471)
                      |+.|+..+.+ +  .+.+.++...
T Consensus       379 G~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        379 GGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCEEEEEEccCCcEEEEEEecCCC
Confidence            9987766543 2  3566666543

>KOG2314|consensus

Probab=99.11  E-value=1.4e-08  Score=95.31  Aligned_cols=233  Identities=13%  Similarity=0.122  Sum_probs=148.5

Q ss_pred             CeEEEEEecCCCEEEEEeC-----------CCcEEEEeCCCCceEEEeecCCC--CEE-EEEEeeCCCCCCccEEEEEeC
Q psy11350        154 PISYCSFSPDSQHVATASW-----------SGLCKLWTVPECELVQTFRGHDC--NVG-AIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~-----------dg~i~iwd~~~~~~~~~~~~h~~--~v~-~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .|.-+.|||+.+||+|-+.           ...++|||+.+|...+.|....+  .++ -..||.++.     ++|--..
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-----y~Arm~~  325 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-----YFARMTG  325 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-----eeEEecc
Confidence            5778899999999998762           25799999999999888875322  233 468998887     5655544


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe----------------EE------e------cc-
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----------------WR------L------DT-  270 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~----------------~~------~------~~-  270 (471)
                       .+|.||+..+-.++..-.. .-..|....|+|.+..|+.-.....                ++      +      |. 
T Consensus       326 -~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk  403 (698)
T KOG2314|consen  326 -NSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK  403 (698)
T ss_pred             -ceEEEEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence             6789998655333222111 1226777788887777665432110                00      0      00 


Q ss_pred             -------------cc-------------------ccccCCCCcceEEEEECCCCCEEEEEec---CCeEEEEECCCC---
Q psy11350        271 -------------PL-------------------ANLEGHEPFRVSRIKFHPSGRFLGTCCW---DHSWRLWDLNQG---  312 (471)
Q Consensus       271 -------------~~-------------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~---  312 (471)
                                   ..                   ..........|...+|-|.|+.+++-+.   ..++.+|-+++.   
T Consensus       404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~  483 (698)
T KOG2314|consen  404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK  483 (698)
T ss_pred             CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence                         00                   0000011224678899999998776553   356888888732   


Q ss_pred             -cEEEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC----
Q psy11350        313 -QEVLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE----  384 (471)
Q Consensus       313 -~~~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~----  384 (471)
                       +.+..+.  ....+.+.|+|.|++++.+.   ..|.+..+|+....+..+-..-....+.+.|.|.|+|+++++.    
T Consensus       484 ~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrh  561 (698)
T KOG2314|consen  484 PSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRH  561 (698)
T ss_pred             hhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhh
Confidence             2222332  24567899999999988764   5788999998753332222222245678999999999999975    


Q ss_pred             --CCcEEEEECCC
Q psy11350        385 --DNAVKIWDLRK  395 (471)
Q Consensus       385 --dg~i~iwd~~~  395 (471)
                        |.--++|+++-
T Consensus       562 k~d~GYri~tfqG  574 (698)
T KOG2314|consen  562 KVDNGYRIFTFQG  574 (698)
T ss_pred             ccccceEEEEeec
Confidence              45567888763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=7.1e-07  Score=80.32  Aligned_cols=241  Identities=15%  Similarity=0.193  Sum_probs=156.5

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC--CceEE--EeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWS---GLCKLWTVPE--CELVQ--TFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDG  221 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~--~~~~~--~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg  221 (471)
                      .+...++-|+|+|++++|+++..+   |.|--|.+..  |+...  .......+-..+++++++.     +++++. ..|
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~-----~vf~AnY~~g  111 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR-----FVFVANYHSG  111 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC-----EEEEEEccCc
Confidence            466788889999999999988654   6777776653  54432  1112223347899999998     566555 458


Q ss_pred             cEEEEeCCC-Ccceee--ecCCC---------CcceEEEEECCCCCEEEEEeC--CCe--EEeccc----cccccCCCCc
Q psy11350        222 SVKLWSLDK-DTPLAN--LEGHE---------PFRVSRIKFHPSGRFLGTCCW--DHS--WRLDTP----LANLEGHEPF  281 (471)
Q Consensus       222 ~i~iwd~~~-~~~~~~--~~~~~---------~~~v~~~~~s~~~~~i~~~~~--d~~--~~~~~~----~~~~~~~~~~  281 (471)
                      .|.++-++. |.....  ...|.         ...+....+.|+++++++...  |..  +++...    ..........
T Consensus       112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence            899998865 322111  11111         113788999999999998854  333  222211    1111112344


Q ss_pred             ceEEEEECCCCCEEEEEe-cCCeEEEEECCCC-cEEEEeeC---------CCCCeEEEEEeCCCCEEEEEeC-CCeEEEE
Q psy11350        282 RVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQG-QEVLHQEG---------HGKPVYCMSFQGDGSVVATGGL-DAFGRVW  349 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~~~~s~d~~~l~t~~~-dg~i~iw  349 (471)
                      ....|.|+|++++.++.+ .+++|-+|..... ..+..++.         -.....+|.++|||++|+++.. ...|.+|
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            678999999999877665 4899999998773 22322221         2345668899999999998864 3467777


Q ss_pred             eCCC--Cee--EEEecccCcCEEEEEEcCCCCEEEEEeCC-CcEEEEECCC
Q psy11350        350 DLRT--GRC--IMFLEGHLKSVFSVDFSPDGYHLATGSED-NAVKIWDLRK  395 (471)
Q Consensus       350 d~~~--~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-g~i~iwd~~~  395 (471)
                      .+..  ++.  +.....+......+.|+|.|++|+++..+ ..|.+|.++.
T Consensus       272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            6653  322  22223344558899999999999988765 4588887653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=2.9e-07  Score=82.73  Aligned_cols=255  Identities=16%  Similarity=0.140  Sum_probs=147.9

Q ss_pred             CCcEEEEeCCC--CceE-EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---CcEEEEeCCCCcceeeecCCCCcceE
Q psy11350        173 SGLCKLWTVPE--CELV-QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---GSVKLWSLDKDTPLANLEGHEPFRVS  246 (471)
Q Consensus       173 dg~i~iwd~~~--~~~~-~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~  246 (471)
                      +.-|++|++.+  |+.. ..+-.+.+.++-|+|+|+..     .|.++..+   |.|.-|.++...              
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~-----~LY~v~~~~~~ggvaay~iD~~~--------------   75 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR-----HLYVVNEPGEEGGVAAYRIDPDD--------------   75 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC-----EEEEEEecCCcCcEEEEEEcCCC--------------
Confidence            57899999873  2211 11224567788999999987     57777655   445555443210              


Q ss_pred             EEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec-CCeEEEEECCC-CcE--EEEeeCCC
Q psy11350        247 RIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLWDLNQ-GQE--VLHQEGHG  322 (471)
Q Consensus       247 ~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~--~~~~~~~~  322 (471)
                             |.+-+.           ....+.++   +.+.+++++++++++++.. .|.|.++-++. |..  +.....|.
T Consensus        76 -------G~Lt~l-----------n~~~~~g~---~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~  134 (346)
T COG2706          76 -------GRLTFL-----------NRQTLPGS---PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT  134 (346)
T ss_pred             -------CeEEEe-----------eccccCCC---CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC
Confidence                   111000           00111222   3478999999998888765 47899998865 322  11223344


Q ss_pred             CC----------eEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEEEec---ccCcCEEEEEEcCCCCEEEEEe-CCCc
Q psy11350        323 KP----------VYCMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIMFLE---GHLKSVFSVDFSPDGYHLATGS-EDNA  387 (471)
Q Consensus       323 ~~----------v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s-~dg~  387 (471)
                      ++          +....|.|++++|++.+. --.|.+|++..|+....-.   ........|.|+|++++.+..+ -+++
T Consensus       135 g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st  214 (346)
T COG2706         135 GSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST  214 (346)
T ss_pred             CCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE
Confidence            44          888999999999988763 3469999999775432211   2345688999999999887655 5889


Q ss_pred             EEEEECCCc----cchhe---ecccCC--CccceeeccccceeeeecccCCCccccc---chhhhcccccc---eeee-c
Q psy11350        388 VKIWDLRKR----RLLKW---CTQLLP--NSIGVTSLLTDLYIDVLESLNPGIGNII---SSALKEQVEPI---PLLL-D  451 (471)
Q Consensus       388 i~iwd~~~~----~~~~~---~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~-~  451 (471)
                      |.+|.....    +.+++   ++....  .....+.++.|+++..  ..+.+...+.   -......+.-+   +... -
T Consensus       215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY--asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~  292 (346)
T COG2706         215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY--ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF  292 (346)
T ss_pred             EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE--EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC
Confidence            999999874    22222   222222  3345555555554432  2332211111   11111111111   1111 2


Q ss_pred             ccceeeeecCCeEEEeec
Q psy11350        452 IQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       452 ~~~l~fs~dg~~lA~~~~  469 (471)
                      .+...|+++|++|.+...
T Consensus       293 PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         293 PRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             CccceeCCCCCEEEEEcc
Confidence            467788888888877654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=1.6e-07  Score=81.95  Aligned_cols=201  Identities=13%  Similarity=0.160  Sum_probs=122.8

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-------CCCCEEEEEEeeCCCCCC-ccEEEEEeCCCcEEEEe
Q psy11350        156 SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-------HDCNVGAIEFHPLPSEGA-VCSLASCAQDGSVKLWS  227 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~-~~~l~s~~~dg~i~iwd  227 (471)
                      .-++||||+.+||.+...|+|+++|+.. ..+..+..       -...|..+.|.+...... ..-|+.-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            4579999999999999999999999864 33333332       235677777876542211 11366677788888776


Q ss_pred             CCCC-----ccee--eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE--EEEE
Q psy11350        228 LDKD-----TPLA--NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF--LGTC  298 (471)
Q Consensus       228 ~~~~-----~~~~--~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~  298 (471)
                      +..+     +..+  .+..+-+..|.++.++|..+.+++|+....-..      ........+++-..-.+..+  .++.
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~------~s~a~~~GLtaWRiL~~~Pyyk~v~~  199 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDG------MSKASSCGLTAWRILSDSPYYKQVTS  199 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCc------cccccccCceEEEEcCCCCcEEEccc
Confidence            5322     2222  344555668999999999998887765432000      00000112333333222221  1122


Q ss_pred             ecCCe------EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc
Q psy11350        299 CWDHS------WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH  363 (471)
Q Consensus       299 ~~dg~------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h  363 (471)
                      ..|+.      ..+|.+-+.+...........|..|..||||++|++...+|.|.+|++.+-++...+..+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            22221      233333332222222335678999999999999999999999999999987776665533

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=3.3e-07  Score=89.04  Aligned_cols=174  Identities=8%  Similarity=-0.138  Sum_probs=101.5

Q ss_pred             CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC---CCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        174 GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ---DGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ..|.+-|..... .+.+... +.+....|+|++..    .++..+.   +..|.++|+.+++.......           
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~----~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----------  231 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQT----AFYYTSYGERKPTLYKYNLYTGKKEKIASS-----------  231 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCc----EEEEEEccCCCCEEEEEECCCCcEEEEecC-----------
Confidence            355555543333 3333333 37788999999873    2443333   35688889887754433321           


Q ss_pred             CCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-c--CCeEEEEECCCCcEEEEeeCCCCCeEE
Q psy11350        251 HPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-W--DHSWRLWDLNQGQEVLHQEGHGKPVYC  327 (471)
Q Consensus       251 s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~v~~  327 (471)
                                                   .+......|+|||+.++... .  +..|.++|+.+++. ..+..+......
T Consensus       232 -----------------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~  281 (419)
T PRK04043        232 -----------------------------QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVN  281 (419)
T ss_pred             -----------------------------CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCc
Confidence                                         11233445666666554332 2  35688889887764 334434433445


Q ss_pred             EEEeCCCCEEEEEeC-CC--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC---------cEEEEECCC
Q psy11350        328 MSFQGDGSVVATGGL-DA--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN---------AVKIWDLRK  395 (471)
Q Consensus       328 ~~~s~d~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---------~i~iwd~~~  395 (471)
                      ..|+|||+.|+-.+. .+  .|+++|+.+++....... ..  ....|+|||++|+..+...         .|.+.|+.+
T Consensus       282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~  358 (419)
T PRK04043        282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS  358 (419)
T ss_pred             cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence            689999987766553 33  588889988765333221 11  1248999999887766432         455666655


Q ss_pred             cc
Q psy11350        396 RR  397 (471)
Q Consensus       396 ~~  397 (471)
                      +.
T Consensus       359 g~  360 (419)
T PRK04043        359 DY  360 (419)
T ss_pred             CC
Confidence            54

>KOG2695|consensus

Probab=99.04  E-value=6.6e-10  Score=98.30  Aligned_cols=127  Identities=17%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCC-----cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG-----QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      ...|.++.|...++.+..|..+|.|..+|++..     .+...+. |...|+++..-. ++++|++.+++|.|.+||++.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            556889999999999999999999999999865     3344444 889999998777 788999999999999999998


Q ss_pred             Cee---EEEecccCcCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        354 GRC---IMFLEGHLKSVFSVD--FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       354 ~~~---~~~~~~h~~~v~~~~--~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      -++   +.++.||...-.-+-  ..+....++++++|...+||.++.+.++.+++.+.+
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            777   889999876544433  345667888999999999999999999998876554

>KOG2041|consensus

Probab=99.04  E-value=2.7e-09  Score=102.82  Aligned_cols=246  Identities=19%  Similarity=0.148  Sum_probs=155.9

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA  273 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~  273 (471)
                      .....|+.|+....     +++.|+.||.+++..+.+...-....+-.  .+..+                     ....
T Consensus        14 nvkL~c~~WNke~g-----yIAcgG~dGlLKVlKl~t~t~d~~~~gla--a~snL---------------------smNQ   65 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESG-----YIACGGADGLLKVLKLGTDTTDLNKSGLA--AASNL---------------------SMNQ   65 (1189)
T ss_pred             CceEEEEEEcccCC-----eEEeccccceeEEEEccccCCcccccccc--ccccc---------------------chhh
Confidence            45678999999887     89999999999999987664433322211  00000                     2345


Q ss_pred             cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       274 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      ++.+| ...|.-+.|+.+.+.|-++..+|-|.+|-+-.+.-.....  ...+.|.+++|+.||..++..-.||.|.|=.+
T Consensus        66 tLeGH-~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   66 TLEGH-NASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhccC-cceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            67788 5579999999999999999999999999998775443332  24567899999999999998888888876655


Q ss_pred             CCCeeEE-EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh-------eecccC---CCccceeec-----
Q psy11350        352 RTGRCIM-FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK-------WCTQLL---PNSIGVTSL-----  415 (471)
Q Consensus       352 ~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-------~~~~~~---~~~~~~~~~-----  415 (471)
                      +..+.-. .+++  .....+.|++|.+.+..+-.+|.+.++|....-.++       ......   +..+.-+..     
T Consensus       145 dGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  145 DGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             ccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            4322111 1221  234578999999988888889999999975432111       111000   000000000     


Q ss_pred             ---cccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeecCC
Q psy11350        416 ---LTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQK  471 (471)
Q Consensus       416 ---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~~  471 (471)
                         -+| +-.+......+.-.+........+-.+....-+...-|+++|.+||+|++++
T Consensus       223 ~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  223 QPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             ccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence               011 1111112223333344444444433334444567888999999999999874

>KOG2315|consensus

Probab=99.03  E-value=4e-08  Score=92.62  Aligned_cols=215  Identities=16%  Similarity=0.218  Sum_probs=138.8

Q ss_pred             CCcCeEEEEEecCCC--EEEE-----EeCCCcEEEEeCCCCceE-----EEeecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        151 DTRPISYCSFSPDSQ--HVAT-----ASWSGLCKLWTVPECELV-----QTFRGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       151 h~~~V~~~~~s~~~~--~l~t-----g~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      |...|+.+.+||.+.  .||+     ++.-+.|+||.......-     ++|.  ...-..+.|++.+..  ..+|++..
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~--LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTA--LLVLASTD  239 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCce--EEEEEEEe
Confidence            678899999998743  4443     345678999988632211     1121  222237788887763  11233443


Q ss_pred             CCC---------cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeC--CCeEEecccccc-ccCCCCcceEEE
Q psy11350        219 QDG---------SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLDTPLAN-LEGHEPFRVSRI  286 (471)
Q Consensus       219 ~dg---------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~--d~~~~~~~~~~~-~~~~~~~~v~~l  286 (471)
                      -|.         ++.+.+++...+  .+......+|.++.|+|+|+-++++..  -..+.+...... ...-..++-.++
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~  317 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTA  317 (566)
T ss_pred             ecCCCccccccceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccce
Confidence            443         577777763333  333343448999999999987766532  233333222111 111114467789


Q ss_pred             EECCCCCEEEEEecC---CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCeeE
Q psy11350        287 KFHPSGRFLGTCCWD---HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL------DAFGRVWDLRTGRCI  357 (471)
Q Consensus       287 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~------dg~i~iwd~~~~~~~  357 (471)
                      -|+|.|++++.++.+   |.|-+||+.+.+++..+.....  +-+.|+|||.+++|++.      |+.++||+. +|..+
T Consensus       318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l  394 (566)
T KOG2315|consen  318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL  394 (566)
T ss_pred             EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence            999999999988875   7899999999888877765443  45799999999999874      678999996 66666


Q ss_pred             EEecccCcCEEEEEEcCC
Q psy11350        358 MFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       358 ~~~~~h~~~v~~~~~sp~  375 (471)
                      ....-. .....+.|-|-
T Consensus       395 ~~~~f~-sEL~qv~W~P~  411 (566)
T KOG2315|consen  395 HEKMFK-SELLQVEWRPF  411 (566)
T ss_pred             ehhhhh-HhHhheeeeec
Confidence            543211 25778888763

>KOG0309|consensus

Probab=99.03  E-value=1.2e-09  Score=105.66  Aligned_cols=198  Identities=19%  Similarity=0.383  Sum_probs=144.4

Q ss_pred             eEEEEEecCC--CEEEEEeCCCcEEEEeCCC---CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        155 ISYCSFSPDS--QHVATASWSGLCKLWTVPE---CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       155 V~~~~~s~~~--~~l~tg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      |-...|+|..  .+-++......-.+|++..   ......+.+|...|+.+.|+|....    ++++++.|-.+..||++
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd----Vlatcsvdt~vh~wd~r  145 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD----VLATCSVDTYVHAWDMR  145 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc----ceeeccccccceeeecc
Confidence            4556777653  3334444466677898853   3344567799999999999998876    89999999999999997


Q ss_pred             CCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        230 KDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       230 ~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      +.. ++..+...                                       ......|+|+.....+.+.+..+.|.+||
T Consensus       146 Sp~~p~ys~~~w---------------------------------------~s~asqVkwnyk~p~vlasshg~~i~vwd  186 (1081)
T KOG0309|consen  146 SPHRPFYSTSSW---------------------------------------RSAASQVKWNYKDPNVLASSHGNDIFVWD  186 (1081)
T ss_pred             CCCcceeeeecc---------------------------------------cccCceeeecccCcchhhhccCCceEEEe
Confidence            653 22222211                                       11356788887666666777788899999


Q ss_pred             CCCC-cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC---------------------------------
Q psy11350        309 LNQG-QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT---------------------------------  353 (471)
Q Consensus       309 ~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~---------------------------------  353 (471)
                      ++.| .++..+++|...|+.++|.. -...+.+++.|++|+.||...                                 
T Consensus       187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~  266 (1081)
T KOG0309|consen  187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV  266 (1081)
T ss_pred             ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence            9987 46777888999999999976 345688889999999998642                                 


Q ss_pred             ----------------------CeeEEEecccCcCEEEEEEcCC----------CCEEEEEeCCCcEEEEECCC
Q psy11350        354 ----------------------GRCIMFLEGHLKSVFSVDFSPD----------GYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       354 ----------------------~~~~~~~~~h~~~v~~~~~sp~----------~~~l~s~s~dg~i~iwd~~~  395 (471)
                                            .+++++|.||...|..+.|-..          .-.|+|.+.|.++++|-+.+
T Consensus       267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                                  1345567788877776666432          23799999999999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=2.8e-07  Score=85.28  Aligned_cols=172  Identities=16%  Similarity=0.138  Sum_probs=133.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC-cEEEEeCCCCcceeeecCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG-SVKLWSLDKDTPLANLEGHE  241 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~  241 (471)
                      +|.+++..| -|...|.+...+-.++.  +|.+.|.-..+..++.     -++.|..|| .+-|+|..+++.......  
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e-----~~vigt~dgD~l~iyd~~~~e~kr~e~~--  400 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPE-----GDVIGTNDGDKLGIYDKDGGEVKRIEKD--  400 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCc-----ceEEeccCCceEEEEecCCceEEEeeCC--
Confidence            688888888 78888888766555443  5677788888877766     488999999 899999977754332221  


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCC
Q psy11350        242 PFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGH  321 (471)
Q Consensus       242 ~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  321 (471)
                                                            -+.|.++..+|+|++++++.....|.++|+.+++....-+..
T Consensus       401 --------------------------------------lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~  442 (668)
T COG4946         401 --------------------------------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE  442 (668)
T ss_pred             --------------------------------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc
Confidence                                                  235899999999999999999999999999999876666666


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCC----eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        322 GKPVYCMSFQGDGSVVATGGLDA----FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       322 ~~~v~~~~~s~d~~~l~t~~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      .+-|+.++|+|+++++|-+--+|    .|+++|+..++.... ....+.=.+-+|.|++++|.--+
T Consensus       443 ~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         443 YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEe
Confidence            78899999999999999887766    589999988875543 22334445668999999887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=4.8e-07  Score=83.76  Aligned_cols=181  Identities=14%  Similarity=0.154  Sum_probs=130.8

Q ss_pred             eCCCcEEEEeCCCCcceeeecC---C--CC--cceEEEE----ECC-CCCEEEEEeCCCeEEe--ccccccccCCCCcce
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEG---H--EP--FRVSRIK----FHP-SGRFLGTCCWDHSWRL--DTPLANLEGHEPFRV  283 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~---~--~~--~~v~~~~----~s~-~~~~i~~~~~d~~~~~--~~~~~~~~~~~~~~v  283 (471)
                      +..|.|.+||..+......-.+   .  ..  .-+.-+.    |++ +|.+++..+....+..  |..-....++ ...|
T Consensus       284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~-~~~V  362 (668)
T COG4946         284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGK-KGGV  362 (668)
T ss_pred             ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCC-CCce
Confidence            4458899999876643321111   1  00  0011111    222 5788888887776444  2222222333 5568


Q ss_pred             EEEEECCCCCEEEEEecCC-eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        284 SRIKFHPSGRFLGTCCWDH-SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       284 ~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      .-..+..+++-++.|..|| .+-|+|.++++ +..+.+.-+.|.++..+|+|++++++.....|.+.|+.+|.....-+.
T Consensus       363 rY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS  441 (668)
T COG4946         363 RYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS  441 (668)
T ss_pred             EEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc
Confidence            8888888888999999999 89999998875 556666778899999999999999999889999999999987655555


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCccchh
Q psy11350        363 HLKSVFSVDFSPDGYHLATGSEDN----AVKIWDLRKRRLLK  400 (471)
Q Consensus       363 h~~~v~~~~~sp~~~~l~s~s~dg----~i~iwd~~~~~~~~  400 (471)
                      ..+-|+.++|+|+++++|-+--+|    .|+++|+..++...
T Consensus       442 ~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         442 EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            667899999999999999876655    58999999887654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.01  E-value=6.5e-07  Score=78.18  Aligned_cols=229  Identities=14%  Similarity=0.203  Sum_probs=131.0

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEee---cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        158 CSFSPDSQHVATASWSGLCKLWTVPEC--ELVQTFR---GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       158 ~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ++.+++|+.||+-- |..|.|=..++.  ..+....   .....=..++|+|++.     +||.+...|+|+++|+.. .
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-----lLa~a~S~G~i~vfdl~g-~   75 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-----LLAYAESTGTIRVFDLMG-S   75 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-----EEEEEcCCCeEEEEeccc-c
Confidence            56788999988876 777777665432  2222222   2222345799999998     899999999999999854 3


Q ss_pred             ceeeecC------CCCcceEEEEECCCC------CEEEEEeCCCeEE---ec---------cccccccCCCCcceEEEEE
Q psy11350        233 PLANLEG------HEPFRVSRIKFHPSG------RFLGTCCWDHSWR---LD---------TPLANLEGHEPFRVSRIKF  288 (471)
Q Consensus       233 ~~~~~~~------~~~~~v~~~~~s~~~------~~i~~~~~d~~~~---~~---------~~~~~~~~~~~~~v~~l~~  288 (471)
                      .+..+..      .....|..+.|.+-.      ..+++-...|.++   +.         .-...+..+.+..|.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            3333332      222356666665432      1344444444422   11         1112344455668999999


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC-E-EEEEeCCCe------EEEEeCCCCeeEEEe
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS-V-VATGGLDAF------GRVWDLRTGRCIMFL  360 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~-l~t~~~dg~------i~iwd~~~~~~~~~~  360 (471)
                      +|..+.|++|+....      +.+.    .......+++-..-.+.- + .++...|+.      -.+|.+-+.+.....
T Consensus       156 ~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             cCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            998888887765432      0000    001112222222211111 1 111111111      123333332222222


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        361 EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       361 ~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ......|..|..||||..||+...+|.|.+|++.+-++.....
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            2345689999999999999999999999999999888776544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=1.3e-06  Score=79.21  Aligned_cols=204  Identities=14%  Similarity=0.090  Sum_probs=129.6

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEe-eCCCCCCccEEEEEeCCCcEEEEeCCCCcce
Q psy11350        157 YCSFSP-DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFH-PLPSEGAVCSLASCAQDGSVKLWSLDKDTPL  234 (471)
Q Consensus       157 ~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  234 (471)
                      ++.|.+ ++.++++-...+.|+.|+..++.... +....  ...+.+. +++      .|+.+...+ +.++|+.+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g------~l~v~~~~~-~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG------RLYVADSGG-IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS------EEEEEETTC-EEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC------EEEEEEcCc-eEEEecCCCcEE
Confidence            568898 66666676678999999988765543 33222  6677787 554      466666644 566698887433


Q ss_pred             eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC--------CeEEE
Q psy11350        235 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD--------HSWRL  306 (471)
Q Consensus       235 ~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------g~i~i  306 (471)
                      ........                                  .+.....+.+++.|+|++.++....        |.|..
T Consensus        74 ~~~~~~~~----------------------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   74 VLADLPDG----------------------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEETT----------------------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             EEeeccCC----------------------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            32221000                                  0012246667777777655544432        56777


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCe-------eEEEecccCcCEEEEEEcCCCCE
Q psy11350        307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA-TGGLDAFGRVWDLRTGR-------CIMFLEGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       307 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-t~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~~~  378 (471)
                      ++.. ++...... .-...+.++|+|+++.|+ +-+..+.|..+++....       ....+....+....+++..+|++
T Consensus       120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            8877 44333332 345568999999998665 56678889999986321       12222322235889999999998


Q ss_pred             EEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        379 LATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      .++....+.|.++|.+ |+.+..+..+.+
T Consensus       198 ~va~~~~~~I~~~~p~-G~~~~~i~~p~~  225 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPD-GKLLREIELPVP  225 (246)
T ss_dssp             EEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred             EEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence            8888889999999987 988887776644

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114|consensus

Probab=98.98  E-value=1.3e-07  Score=93.67  Aligned_cols=206  Identities=14%  Similarity=0.158  Sum_probs=143.1

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc-----EEEEeCCCC--
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS-----VKLWSLDKD--  231 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~--  231 (471)
                      +|++.+..+|.|+.+|.|.+.+ ...+.++.++.+...|...-|.-++.+    +|++.+.|+.     |+||+++.-  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~----~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQN----FLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCce----EEEEEeecCCCCceEEEEecccccCC
Confidence            4588899999999999999998 445666778877777445555555543    7888777654     899998632  


Q ss_pred             ----cce---eeec---CCCCcceEEEEECCCCCEEEEEeCCCeEEecc--------ccccccCCCCcceEEEEECCCCC
Q psy11350        232 ----TPL---ANLE---GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT--------PLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       232 ----~~~---~~~~---~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~--------~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                          +++   ..+.   .....++.+++++.+-+.+++|-.+|.+....        ....+......+|+++.+..++.
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence                233   1122   12356899999999999999999999965521        12223344466899999999988


Q ss_pred             EEEEEecCCeEEEEECCCCcE-EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEE
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQE-VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSV  370 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~  370 (471)
                      .++.+.....|.+|.+....+ ...+..|+.++.|..|++....+++++ +..+.+|+.....+-..+. +|......+
T Consensus       185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~  262 (933)
T KOG2114|consen  185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVF  262 (933)
T ss_pred             eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence            744444456799999984442 444778889999999987555455554 4569999987666655666 665544433

>KOG4532|consensus

Probab=98.97  E-value=1.8e-07  Score=80.40  Aligned_cols=223  Identities=13%  Similarity=0.062  Sum_probs=139.6

Q ss_pred             CCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        173 SGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       173 dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      ...+-+|++-+..  .+..+       ..+.|.|..--....+|+.|+..|...+|...+.+....+-......|+-+.-
T Consensus        51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            3456677764432  22222       34566664432223379999999999999998665333222111101111111


Q ss_pred             C-CCCCEEEEEeCCCeEEe---ccccccccCCCC-cceEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEEE--eeCCC
Q psy11350        251 H-PSGRFLGTCCWDHSWRL---DTPLANLEGHEP-FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG-QEVLH--QEGHG  322 (471)
Q Consensus       251 s-~~~~~i~~~~~d~~~~~---~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~--~~~~~  322 (471)
                      . ...-.+..++.|.+.++   .........|.. -.+.++.++++++++++.+....|..|.+... +.+..  .....
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            1 11223455556655333   222222222322 24788999999999999999999999988654 22222  23334


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE-----EecccCcCEEEEEEcCCCC--EEEEEeCCCcEEEEECCC
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM-----FLEGHLKSVFSVDFSPDGY--HLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~sp~~~--~l~s~s~dg~i~iwd~~~  395 (471)
                      ..-.+..|+.....+|++..||++.|||++.....+     +-..|.+.+..+.|++.|.  +|+..-.-+.+.+.|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            455678999999999999999999999998754332     2235889999999998653  455555567899999999


Q ss_pred             ccchhee
Q psy11350        396 RRLLKWC  402 (471)
Q Consensus       396 ~~~~~~~  402 (471)
                      ++..+.+
T Consensus       284 ~~~~q~I  290 (344)
T KOG4532|consen  284 YVNHQVI  290 (344)
T ss_pred             CceeeEE
Confidence            8876654

>KOG3914|consensus

Probab=98.96  E-value=9.3e-09  Score=93.06  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=67.8

Q ss_pred             cceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Q psy11350        281 FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       281 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~  359 (471)
                      ..++.|+|+||+++|+++..|..|++-.....-.+..+ .||..-|..++.-++ ..|++||.|++|++||+.+|+++.+
T Consensus       152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence            36899999999999999999999999877655445443 579999999998864 5689999999999999999998866


Q ss_pred             ec
Q psy11350        360 LE  361 (471)
Q Consensus       360 ~~  361 (471)
                      +.
T Consensus       231 ~d  232 (390)
T KOG3914|consen  231 CD  232 (390)
T ss_pred             cc
Confidence            54

>KOG4190|consensus

Probab=98.95  E-value=3.5e-09  Score=99.21  Aligned_cols=174  Identities=21%  Similarity=0.308  Sum_probs=122.7

Q ss_pred             EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        187 VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       187 ~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                      +..+.+|+..|..++-..+.+     .+++++.|.+|++|.++... .+.         ..                   
T Consensus       728 L~nf~GH~~~iRai~AidNEN-----SFiSASkDKTVKLWSik~EgD~~~---------ts-------------------  774 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-----SFISASKDKTVKLWSIKPEGDEIG---------TS-------------------  774 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-----ceeeccCCceEEEEEeccccCccc---------cc-------------------
Confidence            345778999998887766665     59999999999999986431 110         00                   


Q ss_pred             EEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeC--CCCEEEEE-
Q psy11350        266 WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQG--DGSVVATG-  340 (471)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~--d~~~l~t~-  340 (471)
                          ....++..| +.+|..+.|-.+.+++++  .||.|.+||.--++++....  ...+.+..+..-+  +..++++| 
T Consensus       775 ----aCQfTY~aH-kk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc  847 (1034)
T KOG4190|consen  775 ----ACQFTYQAH-KKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC  847 (1034)
T ss_pred             ----eeeeEhhhc-cCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec
Confidence                111233334 347888888887777654  47899999988777655332  1222333333333  34445544 


Q ss_pred             eCCCeEEEEeCCCCeeEEEec-----ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        341 GLDAFGRVWDLRTGRCIMFLE-----GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       341 ~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      +...+|+++|.+.+.-...++     +.+..+.+++..|.|+.++.+-.+|+|.+.|.++|+.+.
T Consensus       848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence            788999999999987666554     345668999999999999999999999999999999765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.94  E-value=9.1e-07  Score=85.69  Aligned_cols=223  Identities=14%  Similarity=-0.013  Sum_probs=135.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      .+..+++++.+|.|..+|..+|+.+..+.........+..  ++.     .++.++.+|.+..+|..+|+.+........
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~-----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGG-----LVFVGTEKGEVIALDAEDGKELWRAKLSSE  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCC-----EEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence            3678888888999999999999998776644322222222  233     578888999999999999988776654331


Q ss_pred             cceEE-EEECCCCCEEEEEeCCCeEEec---cccccccCCCCcce------EEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy11350        243 FRVSR-IKFHPSGRFLGTCCWDHSWRLD---TPLANLEGHEPFRV------SRIKFHPSGRFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       243 ~~v~~-~~~s~~~~~i~~~~~d~~~~~~---~~~~~~~~~~~~~v------~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  312 (471)
                        +.+ ...  .+..++.++.++.+...   +.............      .....  .+..++.+..+|.+..+|.+++
T Consensus       137 --~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG  210 (377)
T TIGR03300       137 --VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTG  210 (377)
T ss_pred             --eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence              111 111  23455556556553221   11111110000000      01111  1246778888999999999999


Q ss_pred             cEEEEeeCCC---C-C---eEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        313 QEVLHQEGHG---K-P---VYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       313 ~~~~~~~~~~---~-~---v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      +.+.......   . .   +..+.-+|  .+..+++++.+|.++.||..+|+.+......  .......  .+..++.++
T Consensus       211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~  286 (377)
T TIGR03300       211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTD  286 (377)
T ss_pred             CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEEC
Confidence            8765432110   0 0   00111111  3457888889999999999999877655421  1122222  466788888


Q ss_pred             CCCcEEEEECCCccchhee
Q psy11350        384 EDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~  402 (471)
                      .+|.|..+|..+++.+...
T Consensus       287 ~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       287 ADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCCeEEEEECCCCcEEEcc
Confidence            9999999999999876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.91  E-value=5.5e-07  Score=87.22  Aligned_cols=227  Identities=11%  Similarity=0.012  Sum_probs=138.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      ++..++.++.+|.++.+|..+|+.+...... ..+.+.-...+ .     .++.++.+|.|..||..+|+.+..+.....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~-~-----~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~  176 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVAN-G-----LVVVRTNDGRLTALDAATGERLWTYSRVTP  176 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEEC-C-----EEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence            4678888888999999999999988776532 22222111112 2     477778899999999999988777654332


Q ss_pred             cc----eEEEEECCCCCEEEEEeCCCeEEe---cccccccc-------CCC-CcceEEEEECC--CCCEEEEEecCCeEE
Q psy11350        243 FR----VSRIKFHPSGRFLGTCCWDHSWRL---DTPLANLE-------GHE-PFRVSRIKFHP--SGRFLGTCCWDHSWR  305 (471)
Q Consensus       243 ~~----v~~~~~s~~~~~i~~~~~d~~~~~---~~~~~~~~-------~~~-~~~v~~l~~~~--~~~~l~~~~~dg~i~  305 (471)
                      ..    ..+....  +..++++..++.+..   .+......       +.. ......+.-+|  .+..+++++.+|.++
T Consensus       177 ~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       177 ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVA  254 (377)
T ss_pred             ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEE
Confidence            00    0011111  234555555554222   11111000       000 00000111111  356788888899999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc-CEEEEEEcCCCCEEEEEeC
Q psy11350        306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK-SVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~  384 (471)
                      .||..+++.+...... . .....  .++..+++++.+|.++.+|..+++.+........ ...+...  .+..|++++.
T Consensus       255 a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~  328 (377)
T TIGR03300       255 ALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF  328 (377)
T ss_pred             EEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence            9999999877655421 1 11222  2456788888999999999999987765532111 2222222  3678899999


Q ss_pred             CCcEEEEECCCccchheecc
Q psy11350        385 DNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       385 dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +|.|.++|..+++.+..+..
T Consensus       329 ~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       329 EGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             CCEEEEEECCCCCEEEEEEc
Confidence            99999999999998876653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=6e-07  Score=80.89  Aligned_cols=193  Identities=18%  Similarity=0.076  Sum_probs=126.3

Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee-cC
Q psy11350        161 SPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL-EG  239 (471)
Q Consensus       161 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~  239 (471)
                      .+++.++++++.++.|+.||..+|+.+..+.. ...+........+      .++.++.++.|..+|..+|+.+... ..
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~------~v~v~~~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG------RVYVGTSDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT------EEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc------ccccccceeeeEecccCCcceeeeeccc
Confidence            34667788888999999999999999888775 2222222222333      4777778899999999999887763 32


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE  319 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  319 (471)
                      ..+.                               .    . ..........+..++++..++.|..+|+++|+.+....
T Consensus       106 ~~~~-------------------------------~----~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen  106 SSPP-------------------------------A----G-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             SSCT-------------------------------C----S-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred             cccc-------------------------------c----c-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence            2110                               0    0 01111112227788888889999999999999988776


Q ss_pred             CCCCC----------eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEE
Q psy11350        320 GHGKP----------VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       320 ~~~~~----------v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~  389 (471)
                      .....          +..-....++ .++.++.++.+..+|+.+++.+....  ...+..+ ..+++..|+.++.++.|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEE
T ss_pred             cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEE
Confidence            54322          1122222244 77777777754444999998664333  2233332 345678888888999999


Q ss_pred             EEECCCccchh
Q psy11350        390 IWDLRKRRLLK  400 (471)
Q Consensus       390 iwd~~~~~~~~  400 (471)
                      .||+++++.+.
T Consensus       226 ~~d~~tG~~~W  236 (238)
T PF13360_consen  226 ALDLKTGKVVW  236 (238)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEECCCCCEEe
Confidence            99999998753

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.89  E-value=2.9e-06  Score=89.89  Aligned_cols=240  Identities=16%  Similarity=0.142  Sum_probs=151.2

Q ss_pred             CCcCeEEEEEecCCCEEEEEeC---C---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC---CC
Q psy11350        151 DTRPISYCSFSPDSQHVATASW---S---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ---DG  221 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~---d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~---dg  221 (471)
                      +...-..++|-.||.++|+.+.   .   ..++||+- +|....+-..-.+--.+++|-|.|+     +|++...   ..
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~-----lIA~~q~~~~~~  281 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN-----LIASSQRLPDRH  281 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC-----EEEEEEEcCCCc
Confidence            4445667899999999998774   2   57999994 4665554443334445899999998     6666554   34


Q ss_pred             cEEEEeCCCCcceeeecC---CCCcceEEEEECCCCCEEEEEeCCCe--EEe----ccccccccCCCCcceEEEEECCCC
Q psy11350        222 SVKLWSLDKDTPLANLEG---HEPFRVSRIKFHPSGRFLGTCCWDHS--WRL----DTPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~----~~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      .|.+|.- +|-.-..|..   .....|..+.|++++..+++...+..  |..    |-....+.......+..+.|+|..
T Consensus       282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            5677763 4433333332   33458999999999999999887663  222    112222332223345559999954


Q ss_pred             -CEEEEEecCCeEEEEECC----CCc--------EEEEe-----------------------eCCCCCeEEEEEeCCCCE
Q psy11350        293 -RFLGTCCWDHSWRLWDLN----QGQ--------EVLHQ-----------------------EGHGKPVYCMSFQGDGSV  336 (471)
Q Consensus       293 -~~l~~~~~dg~i~iwd~~----~~~--------~~~~~-----------------------~~~~~~v~~~~~s~d~~~  336 (471)
                       ..|.+.+.+|.+..+++.    .+.        .+..+                       -....+|.+++|++++..
T Consensus       361 p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~  440 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR  440 (928)
T ss_pred             CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe
Confidence             456677666666554432    110        01111                       123567999999999888


Q ss_pred             EEEEeCCCeEEEEeCCCCeeE--------EEec----------ccCcCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q psy11350        337 VATGGLDAFGRVWDLRTGRCI--------MFLE----------GHLKSVFSVDFSPDGYHLATGSED---NAVKIWDLRK  395 (471)
Q Consensus       337 l~t~~~dg~i~iwd~~~~~~~--------~~~~----------~h~~~v~~~~~sp~~~~l~s~s~d---g~i~iwd~~~  395 (471)
                      +++-..||.|.+|........        ..+.          .....+..++|..+...++....+   ..+.++++..
T Consensus       441 ~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  441 FAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             EEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence            999999999999985432111        1111          123457888998877766665554   6788888854


Q ss_pred             cc
Q psy11350        396 RR  397 (471)
Q Consensus       396 ~~  397 (471)
                      ..
T Consensus       521 ~~  522 (928)
T PF04762_consen  521 SE  522 (928)
T ss_pred             CC
Confidence            43

>KOG1912|consensus

Probab=98.88  E-value=2e-07  Score=91.15  Aligned_cols=211  Identities=17%  Similarity=0.205  Sum_probs=149.8

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCC-------CCccEEEEEeCCCcEEEE
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE-------GAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-------~~~~~l~s~~~dg~i~iw  226 (471)
                      .-.++.|+|.| ++|.|+ ...|.+.|..+.+.++.+..|...|+.+.|.|....       ....+|+++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35677899876 677777 678999999999999999999999999999986421       122357788888999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC---CC-CEEEEEecCC
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP---SG-RFLGTCCWDH  302 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~-~~l~~~~~dg  302 (471)
                      |...+..+..+..+.+                                       ++..++|-|   +. ..|++-....
T Consensus        95 d~~~~s~~~~l~~~~~---------------------------------------~~qdl~W~~~rd~Srd~LlaIh~ss  135 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSND---------------------------------------SVQDLCWVPARDDSRDVLLAIHGSS  135 (1062)
T ss_pred             EehhhhhhhhhcCCCc---------------------------------------chhheeeeeccCcchheeEEecCCc
Confidence            9988877766666554                                       344455543   34 4566777788


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC-------CeeEEEecccCc---------
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT-------GRCIMFLEGHLK---------  365 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~-------~~~~~~~~~h~~---------  365 (471)
                      +|.+|+..+|+.+...........|+.+.| |.+.+..-+..|.+.+.+.-.       ++..+.-..|..         
T Consensus       136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence            999999999998888776667788899999 777777777788877776421       233322222221         


Q ss_pred             -------C---------EEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        366 -------S---------VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       366 -------~---------v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                             .         ...++|+|.-+.++-......+.|+|++-..++..++..
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie  271 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE  271 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec
Confidence                   0         113567886554444556778999999877777655433

>KOG1645|consensus

Probab=98.84  E-value=3.9e-07  Score=82.70  Aligned_cols=241  Identities=16%  Similarity=0.116  Sum_probs=151.8

Q ss_pred             eeecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+.+|...|..++|||... +|..++.+..|+|.|+++...+..+..| ..+++++|.-+..+    +++.|...|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h----~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH----VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcc----eeEEeccCceEEE
Confidence            4567889999999999987 7888999999999999999999988887 88999999988876    8999999999999


Q ss_pred             EeCCCCc-ceeeecC-CCCcceEEEEE------CCCCCEEEEEeCCCe-EEe----ccccccccCCCCcceEEEEECCCC
Q psy11350        226 WSLDKDT-PLANLEG-HEPFRVSRIKF------HPSGRFLGTCCWDHS-WRL----DTPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       226 wd~~~~~-~~~~~~~-~~~~~v~~~~~------s~~~~~i~~~~~d~~-~~~----~~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      ||++..+ ++..+.. -.-.+|..++.      .+.|.+++..+.+-. |.+    ......+....++...++.+++..
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s  342 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVS  342 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence            9997543 3333322 11113333333      334555555555443 443    222333333335566777777765


Q ss_pred             CEEEEEecC-C------e-EEEEECCCCcEEEEee-CC-CCCe------EEEEEeCCCCEEE-EEeCCCeEEEEeCCCCe
Q psy11350        293 RFLGTCCWD-H------S-WRLWDLNQGQEVLHQE-GH-GKPV------YCMSFQGDGSVVA-TGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       293 ~~l~~~~~d-g------~-i~iwd~~~~~~~~~~~-~~-~~~v------~~~~~s~d~~~l~-t~~~dg~i~iwd~~~~~  355 (471)
                      ++++..... .      . +---|...|.++.... ++ +.+-      ..+.-.++.++++ +|+..+.+.+||..+++
T Consensus       343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence            655544332 1      0 1112333444433221 11 1110      1122233445544 45566789999999999


Q ss_pred             eEEEecccCcCEEEEEEcC-C-CCEEEEEeCCCcEEEEECC
Q psy11350        356 CIMFLEGHLKSVFSVDFSP-D-GYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp-~-~~~l~s~s~dg~i~iwd~~  394 (471)
                      .++++.- ..+|..++... + +.+|++-. |..++|+...
T Consensus       423 vvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  423 VVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            9998874 47888887654 3 34666554 5578887643

>KOG4714|consensus

Probab=98.84  E-value=1.5e-08  Score=86.48  Aligned_cols=94  Identities=22%  Similarity=0.350  Sum_probs=73.9

Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCe-eEEEecccCcCEEEEEEcC-CCCE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFSP-DGYH  378 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp-~~~~  378 (471)
                      +..+.|+++..+.+.........|++++-+| ..+++++|+.||.+.+||.+... +...+..|..++.-+-|+| ++..
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            4467777766544433333334599999999 45678889999999999999874 3445678999999999999 6889


Q ss_pred             EEEEeCCCcEEEEECCC
Q psy11350        379 LATGSEDNAVKIWDLRK  395 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~  395 (471)
                      |++++.||.+.-||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.81  E-value=1.5e-08  Score=62.49  Aligned_cols=39  Identities=44%  Similarity=0.972  Sum_probs=37.0

Q ss_pred             CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       354 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      ++++.++.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.81  E-value=4.5e-06  Score=75.27  Aligned_cols=220  Identities=19%  Similarity=0.198  Sum_probs=149.2

Q ss_pred             EEEEEec-CCCEEEEEeCCCc-EEEEeCCCCceEEEeecCCCCE--EEEEEeeCCCCCCccEEEEEeC-----CCcEEEE
Q psy11350        156 SYCSFSP-DSQHVATASWSGL-CKLWTVPECELVQTFRGHDCNV--GAIEFHPLPSEGAVCSLASCAQ-----DGSVKLW  226 (471)
Q Consensus       156 ~~~~~s~-~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~~~~~l~s~~~-----dg~i~iw  226 (471)
                      ..++.+| .+..++.+-.-|+ ..+||..+++....+....+.-  -.-.|++++.     +|++.-.     .|.|-||
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-----~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-----LLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-----EEEEeccccCCCcEEEEEE
Confidence            3567788 4556777776664 7889999999887776443332  2578999998     5776544     4789999


Q ss_pred             eCC-CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC--CEEEEEecCCe
Q psy11350        227 SLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG--RFLGTCCWDHS  303 (471)
Q Consensus       227 d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~  303 (471)
                      |.. +-+.+..+..+.- ....+.+.|||+.|+++..                      .|.-+|+.  ..|=..+.+.+
T Consensus        83 d~~~~~~ri~E~~s~GI-GPHel~l~pDG~tLvVANG----------------------GI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGI-GPHELLLMPDGETLVVANG----------------------GIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             ECcCCcEEEeEecCCCc-ChhhEEEcCCCCEEEEEcC----------------------CCccCcccCceecChhhcCCc
Confidence            998 4556666665543 5567788999987776532                      12223332  13334455667


Q ss_pred             EEEEECCCCcEEEE--e--eCCCCCeEEEEEeCCCCEEEEEeCCCe-------EEEEeCCCCeeEEEec-------ccCc
Q psy11350        304 WRLWDLNQGQEVLH--Q--EGHGKPVYCMSFQGDGSVVATGGLDAF-------GRVWDLRTGRCIMFLE-------GHLK  365 (471)
Q Consensus       304 i~iwd~~~~~~~~~--~--~~~~~~v~~~~~s~d~~~l~t~~~dg~-------i~iwd~~~~~~~~~~~-------~h~~  365 (471)
                      +.+.|..+|+.+..  +  .-|...|..+++.++|..++..-..|.       |.+++.  +..+..+.       .-.+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~  217 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNG  217 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCC
Confidence            88888888887766  3  337788999999999987766544432       444443  22222222       2346


Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCccchheeccc
Q psy11350        366 SVFSVDFSPDGYHLA-TGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .+-+|++++++.+++ |+-.-|.+.+||..+++.+......
T Consensus       218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~  258 (305)
T PF07433_consen  218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP  258 (305)
T ss_pred             ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence            799999999998775 5556788999999999988765433

>KOG0309|consensus

Probab=98.78  E-value=6.9e-08  Score=93.76  Aligned_cols=196  Identities=24%  Similarity=0.410  Sum_probs=137.3

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-CcceeeecCCCCcceEEEEECCCCC---EEEEEeCCCe--EE
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-DTPLANLEGHEPFRVSRIKFHPSGR---FLGTCCWDHS--WR  267 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~i~~~~~d~~--~~  267 (471)
                      .+++.++..+|.+.+     ++.++.-|. .+-|+.. ..+-.-+....+..+-...|+|...   .+++.+....  |.
T Consensus        24 ~~~~~a~si~p~grd-----i~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRD-----IVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccch-----hhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            467888999999985     777777664 4556543 3444444444455677778877532   3444443333  44


Q ss_pred             ecc-----ccccccCCCCcceEEEEECCCCC-EEEEEecCCeEEEEECCCCc-EEEEeeCCCCCeEEEEEeCCCCEEEEE
Q psy11350        268 LDT-----PLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       268 ~~~-----~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~  340 (471)
                      +..     ....+.+| ...|+.+.|+|... .+++++-|..+..||+++.. ++..+..-......++|+.-...+.+.
T Consensus        98 lA~ss~~aIef~lhgh-sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGH-SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhcCCccceEEEEecC-ccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            321     12234455 55799999999655 78999999999999999864 455555445566788998844445556


Q ss_pred             eCCCeEEEEeCCCC-eeEEEecccCcCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q psy11350        341 GLDAFGRVWDLRTG-RCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       341 ~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +..+.|.+||++.| .++..+++|...|+.++|..- -..+.+++.||+|++||..+.
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            67788999999977 678899999999999998752 345788999999999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.78  E-value=2.6e-06  Score=91.92  Aligned_cols=195  Identities=13%  Similarity=0.095  Sum_probs=128.6

Q ss_pred             eEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeecC-----------------CCCEEEEEEeeCCCCCCccEEEE
Q psy11350        155 ISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGH-----------------DCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      ...+++++++..|+++. .++.|+++|+.++. +.++.+-                 -..-..++++|++..    ++++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~----LyVa  700 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK----VYIA  700 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe----EEEE
Confidence            46788888888766654 45789999987654 3333210                 012357999995443    6777


Q ss_pred             EeCCCcEEEEeCCCCcceeeecCC--------------CCcceEEEEECCCCCEEEEEe-CCCeEEecccc---cc-cc-
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGH--------------EPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTPL---AN-LE-  276 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~---~~-~~-  276 (471)
                      .+.++.|++||..++... .+.+.              .-.....++++|+++.++++. .++.+......   .. +. 
T Consensus       701 d~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        701 MAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             ECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            788899999998766432 11110              012456799999998665554 44554442211   00 00 


Q ss_pred             ------------CCC--------CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCC--------------C
Q psy11350        277 ------------GHE--------PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGH--------------G  322 (471)
Q Consensus       277 ------------~~~--------~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~  322 (471)
                                  +..        -....+++++++|+.+++-+.++.|++||..++.... +.+.              -
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCccccccc
Confidence                        000        0124689999999988888889999999998775442 2221              1


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                      .....++++++|+++++.+.++.|++||+.+++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            2467899999999999989999999999988764

>KOG0882|consensus

Probab=98.75  E-value=1.7e-07  Score=86.07  Aligned_cols=246  Identities=15%  Similarity=0.138  Sum_probs=165.3

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC---CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-CCcEEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPE---CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-DGSVKLW  226 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iw  226 (471)
                      |...|+.+.-+ -.+++.+++.||.++.|.-..   -+.+..+..|.+.|.+++.+-++.     ++.|.+. |..++++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-----L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-----LFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-----eEeeccCcccceeEE
Confidence            77777776544 357899999999999998543   134455678888999999998887     6888777 9999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCC--EEEEEeC-CCeEEecc------ccccccCCCCcceEEEEECCCCCEEEE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGR--FLGTCCW-DHSWRLDT------PLANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~i~~~~~-d~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      |+.+-..+.-++...-....+...+|...  .++++.. ++.+.+..      +......-+..+|.++.++|.+..+++
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            98765544333322211111222222211  3333332 33333322      222233334668999999999999999


Q ss_pred             EecCCeEEEEECCC-CcEE--------------EEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        298 CCWDHSWRLWDLNQ-GQEV--------------LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       298 ~~~dg~i~iwd~~~-~~~~--------------~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      ....|.|.-|.... .+..              ..+........++.|+|+|..+.+-+.|..|+++++++|+.++.+..
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            99999999999873 1111              11222345677999999999999999999999999999876544321


Q ss_pred             --------------------------------cC-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        363 --------------------------------HL-KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       363 --------------------------------h~-~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                                                      |. ..-+.+.|...|++|+-|+-=| |+|.++.++.+++.+.
T Consensus       242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                            11 1234567888889988887654 8899999888776553

>KOG4714|consensus

Probab=98.72  E-value=1.3e-07  Score=80.92  Aligned_cols=72  Identities=21%  Similarity=0.235  Sum_probs=60.7

Q ss_pred             ceEEEEECCC-CCEEEEEecCCeEEEEECCCCcE-EEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC
Q psy11350        282 RVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQE-VLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       282 ~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      .|++++-+|. .+.+++|+.||.+-+||.+.... ...+..|..++..+-|+| ++..|++++.||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4888888884 45677889999999999998743 344678999999999999 788999999999999999763

>KOG2695|consensus

Probab=98.69  E-value=6e-08  Score=86.15  Aligned_cols=161  Identities=18%  Similarity=0.234  Sum_probs=115.4

Q ss_pred             EEecC--CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee
Q psy11350        159 SFSPD--SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       159 ~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  236 (471)
                      +|+-+  |-. ++.+.+..|-+-|+.+|-.. .|. ..+.|.++.|...++     ++..|+.+|.|...|++.+..-..
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~n-----Lv~~GcRngeI~~iDLR~rnqG~~  289 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDN-----LVFNGCRNGEIFVIDLRCRNQGNG  289 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCC-----eeEecccCCcEEEEEeeecccCCC
Confidence            55532  334 44445778888898876433 333 467899999998777     799999999999999976521100


Q ss_pred             ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEEEEEecCCeEEEEECCCCcE-
Q psy11350        237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQE-  314 (471)
Q Consensus       237 ~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-  314 (471)
                      .      .+..+                            -| +..|+++..-. ++++|.+.+.+|+|++||++--++ 
T Consensus       290 ~------~a~rl----------------------------yh-~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~  334 (425)
T KOG2695|consen  290 W------CAQRL----------------------------YH-DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK  334 (425)
T ss_pred             c------ceEEE----------------------------Ec-CcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence            0      00000                            01 33577777766 788999999999999999997777 


Q ss_pred             --EEEeeCCCCCeEEE--EEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        315 --VLHQEGHGKPVYCM--SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       315 --~~~~~~~~~~v~~~--~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                        +....||...-.-+  -..+....+++++.|...+||.++.|..+.++..
T Consensus       335 ~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  335 KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence              88888886543332  3345667888899999999999999999888764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.69  E-value=7.6e-08  Score=59.28  Aligned_cols=39  Identities=33%  Similarity=0.627  Sum_probs=36.7

Q ss_pred             CcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       312 ~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      ++++..+.+|..+|++++|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.66  E-value=6.5e-06  Score=78.72  Aligned_cols=296  Identities=17%  Similarity=0.112  Sum_probs=157.5

Q ss_pred             ecCCCEEEEEe---------CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        161 SPDSQHVATAS---------WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       161 s~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      |||+++++...         ..+.+.|||+.+++....... ...+....|+|++.     .++.. .++.|.+++..++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~-----~~~~v-~~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGK-----YIAFV-RDNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSST-----EEEEE-ETTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCC-----eeEEE-ecCceEEEECCCC
Confidence            68888877742         247899999999766554433 56788999999998     45554 4688999998777


Q ss_pred             cceeeecCCCC----------------cceEEEEECCCCCEEEEEeCCCe-EEeccccccccCC-CCcceEEEEECCCCC
Q psy11350        232 TPLANLEGHEP----------------FRVSRIKFHPSGRFLGTCCWDHS-WRLDTPLANLEGH-EPFRVSRIKFHPSGR  293 (471)
Q Consensus       232 ~~~~~~~~~~~----------------~~v~~~~~s~~~~~i~~~~~d~~-~~~~~~~~~~~~~-~~~~v~~l~~~~~~~  293 (471)
                      ...........                ..-..+.|||||++|+....|.. +...........+ .--.+..+.+-.-|.
T Consensus        74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            44432221111                12356889999999998876644 1110000000000 000233444432222


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEE--e---eCCCCCeEEEEEeCCCCEEEEE--eCCC---eEEEEeCCCCeeEEEecc-
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLH--Q---EGHGKPVYCMSFQGDGSVVATG--GLDA---FGRVWDLRTGRCIMFLEG-  362 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~--~---~~~~~~v~~~~~s~d~~~l~t~--~~dg---~i~iwd~~~~~~~~~~~~-  362 (471)
                      -...    -.+.|+|+.+++....  .   ..-...+..+.|.+++..|+..  ..+.   .+.++|..++.+...+.. 
T Consensus       154 ~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~  229 (353)
T PF00930_consen  154 PNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET  229 (353)
T ss_dssp             ---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred             cCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence            2111    2377789988765321  1   2345668899999998834433  2322   467788877754333221 


Q ss_pred             cCcC---EEEEEEc-CCCC-EEEEEeCCCc--EEEEECCCccchheecccCCCccceeeccccceeeeecccC--CCccc
Q psy11350        363 HLKS---VFSVDFS-PDGY-HLATGSEDNA--VKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLN--PGIGN  433 (471)
Q Consensus       363 h~~~---v~~~~~s-p~~~-~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~  433 (471)
                      ..+.   -..+.|. +++. +|.....||.  |.+.+...+... .+....-....+..+..+....++.+..  +...+
T Consensus       230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred             CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence            1122   2245554 5544 5555557776  455566555522 2322221222344444444333333332  33444


Q ss_pred             ccchhh--hcccccceeeeccc-ceeeeecCCeEEEee
Q psy11350        434 IISSAL--KEQVEPIPLLLDIQ-KLTFKFDSDLHAMVL  468 (471)
Q Consensus       434 ~~~~~~--~~~~~~~~~~~~~~-~l~fs~dg~~lA~~~  468 (471)
                      ++....  ...+.++.+..... ...|||||++++...
T Consensus       309 lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  309 LYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             EEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            444333  35566777666667 899999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066|consensus

Probab=98.66  E-value=1.4e-06  Score=85.94  Aligned_cols=177  Identities=17%  Similarity=0.205  Sum_probs=124.8

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ..++|++++  +++|+.|+.+|.|++++.. +.. .+...|...      ...|.     +++||+.||+|.|-.+-+.+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Ge-----y~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGE-----YVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCc-----eEEEecCCCcEEEeeccCCc
Confidence            356666665  4899999999999999965 333 333344333      34455     79999999999999998887


Q ss_pred             ceeeecCCCCcceEEEEECCC-----CCEEEEEeCCCeEEec------cccccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        233 PLANLEGHEPFRVSRIKFHPS-----GRFLGTCCWDHSWRLD------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~-----~~~i~~~~~d~~~~~~------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      ....+.-+.  ++.+++++|+     .+.+++|+..|. .+.      ...........++|.++.|.  |+++|-++.+
T Consensus       105 ~~~~~df~r--piksial~Pd~~~~~sk~fv~GG~agl-vL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~  179 (846)
T KOG2066|consen  105 EITQYDFKR--PIKSIALHPDFSRQQSKQFVSGGMAGL-VLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD  179 (846)
T ss_pred             cceeEecCC--cceeEEeccchhhhhhhheeecCcceE-EEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC
Confidence            777666555  7999999998     568899988883 331      11111222335689999996  7788888877


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCC------eEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKP------VYCMSFQGDGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~d~~~l~t~~~dg~i~iwd~~  352 (471)
                      | |++||+.+++.+..++.....      -..+.|.++. .|+.| ...+|+|..++
T Consensus       180 G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  180 G-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             C-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence            6 999999998877766543332      2357777654 44554 45578888877

>KOG0882|consensus

Probab=98.64  E-value=1.6e-06  Score=79.88  Aligned_cols=211  Identities=15%  Similarity=0.098  Sum_probs=147.0

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASW-SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      +..|-..|.+++.+.+|.++.+.+. |..++++|+.+...+.-++...-+ ..+.|..........+-++.-.+|.+.++
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~Vv  127 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVV  127 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEE
Confidence            3468888999999999999999877 999999999876655433321111 12333322221111123344567999999


Q ss_pred             eCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccC-------------------CCCcceEEE
Q psy11350        227 SLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEG-------------------HEPFRVSRI  286 (471)
Q Consensus       227 d~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~-------------------~~~~~v~~l  286 (471)
                      |-.... +...+..-...+|..+.++|.+..+++....|.+..|+....++-                   .......++
T Consensus       128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~  207 (558)
T KOG0882|consen  128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF  207 (558)
T ss_pred             CCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence            975443 455555555559999999999999999988888777655431111                   113357899


Q ss_pred             EECCCCCEEEEEecCCeEEEEECCCCcEEEEee--------------------------------CCC-CCeEEEEEeCC
Q psy11350        287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE--------------------------------GHG-KPVYCMSFQGD  333 (471)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------~~~-~~v~~~~~s~d  333 (471)
                      .|+|++..+.+-+.|..|+++++.+++.++.+.                                .|. ..-+.+.|...
T Consensus       208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes  287 (558)
T KOG0882|consen  208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES  287 (558)
T ss_pred             EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence            999999999999999999999999886544321                                122 22346788888


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        334 GSVVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       334 ~~~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      |++|+.|+.=| |+|.++.+++++..+
T Consensus       288 ~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  288 GNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             CCEEEeeccee-EEEEEeecCeEEEEe
Confidence            99999987766 889999988777654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.64  E-value=3.5e-05  Score=69.80  Aligned_cols=179  Identities=17%  Similarity=0.103  Sum_probs=113.1

Q ss_pred             eEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCceEEEeec-----CCCCEEEEEEeeCCCCCCccEEEEEeCC--------
Q psy11350        155 ISYCSFS-PDSQHVATASWSGLCKLWTVPECELVQTFRG-----HDCNVGAIEFHPLPSEGAVCSLASCAQD--------  220 (471)
Q Consensus       155 V~~~~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~l~s~~~d--------  220 (471)
                      ...+++. +++ .|+.+.. +.+.++|+.+++....+..     .....+.+++.|++.     +.++....        
T Consensus        42 ~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-----ly~t~~~~~~~~~~~~  114 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-----LYVTDSGGGGASGIDP  114 (246)
T ss_dssp             EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------EEEEEECCBCTTCGGS
T ss_pred             CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----EEEEecCCCccccccc
Confidence            6667777 564 5555553 4556669988865544432     345678899999987     45554433        


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEE-EEe
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCC  299 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~  299 (471)
                      |.|..++.. ++.......                                        -.....|+|+|+++.|+ +-+
T Consensus       115 g~v~~~~~~-~~~~~~~~~----------------------------------------~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen  115 GSVYRIDPD-GKVTVVADG----------------------------------------LGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEEEEETT-SEEEEEEEE----------------------------------------ESSEEEEEEETTSSEEEEEET
T ss_pred             cceEEECCC-CeEEEEecC----------------------------------------cccccceEECCcchheeeccc
Confidence            345555544 321111110                                        11367899999998766 456


Q ss_pred             cCCeEEEEECCCCcE----EE---EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        300 WDHSWRLWDLNQGQE----VL---HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~----~~---~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      ..+.|..|++.....    ..   .+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+......+++++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            678899998863221    11   122222347789999999998888889999999977 8888877766568999999


Q ss_pred             c-CCCCEEEEE
Q psy11350        373 S-PDGYHLATG  382 (471)
Q Consensus       373 s-p~~~~l~s~  382 (471)
                      . |+.+.|+..
T Consensus       233 gg~~~~~L~vT  243 (246)
T PF08450_consen  233 GGPDGKTLYVT  243 (246)
T ss_dssp             ESTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            4 665655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275|consensus

Probab=98.62  E-value=1.2e-06  Score=87.49  Aligned_cols=181  Identities=16%  Similarity=0.210  Sum_probs=132.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      ++..++.|+--..+..+|+.+.+..+...-..+.|+-++.+  +.     ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr-----~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NR-----NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--Cc-----EEEeecccceEEeecCCcCceeeeeecccc
Confidence            44677788878889999999988887776555556666553  33     689999999999999999999999998876


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec---------CCeEEEEECCCCc
Q psy11350        243 FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW---------DHSWRLWDLNQGQ  313 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~  313 (471)
                       .                                      |..  |.-.|+.|++++.         |..|+|||++..+
T Consensus       219 -s--------------------------------------iSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  219 -S--------------------------------------ISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             -c--------------------------------------eee--eeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence             2                                      222  2223555555544         5679999999887


Q ss_pred             EEEEeeCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEe---CCCC-eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        314 EVLHQEGHGKPVYCMSFQGD-GSVVATGGLDAFGRVWD---LRTG-RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       314 ~~~~~~~~~~~v~~~~~s~d-~~~l~t~~~dg~i~iwd---~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      .+.-+.-+.++ .-+.|.|. ...+++++..|...+-|   +.+. .-+..+......+.+++++++|..++.|..+|.|
T Consensus       258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence            66555545444 45677873 45788888899999988   3332 1122333344559999999999999999999999


Q ss_pred             EEEE
Q psy11350        389 KIWD  392 (471)
Q Consensus       389 ~iwd  392 (471)
                      .+|-
T Consensus       337 ~~wa  340 (1118)
T KOG1275|consen  337 NLWA  340 (1118)
T ss_pred             eeec
Confidence            9997

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.62  E-value=2.9e-05  Score=69.89  Aligned_cols=178  Identities=15%  Similarity=0.050  Sum_probs=118.0

Q ss_pred             CCcEEEEeCCCCceEEEeecC--CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEE
Q psy11350        173 SGLCKLWTVPECELVQTFRGH--DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF  250 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  250 (471)
                      +|+|..||..+|+.+.....-  .....+... +.+.     .+++++.++.|..||..+|+.+..+......       
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-----~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-------   68 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-----RVYVASGDGNLYALDAKTGKVLWRFDLPGPI-------   68 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-----EEEEEETTSEEEEEETTTSEEEEEEECSSCG-------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-----EEEEEcCCCEEEEEECCCCCEEEEeeccccc-------
Confidence            689999999999999887541  122222223 2333     5778889999999999999887776653220       


Q ss_pred             CCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eCCC---CCeE
Q psy11350        251 HPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-EGHG---KPVY  326 (471)
Q Consensus       251 s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~  326 (471)
                                                   . ..  .  ...+..+++++.++.|+.+|..+|+.+... ....   ....
T Consensus        69 -----------------------------~-~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   69 -----------------------------S-GA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             -----------------------------G-SG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             -----------------------------c-ce--e--eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence                                         0 00  1  123556777778889999999999988874 3221   1122


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC----------EEEEEEcCCCCEEEEEeCCCc-EEEEECCC
Q psy11350        327 CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS----------VFSVDFSPDGYHLATGSEDNA-VKIWDLRK  395 (471)
Q Consensus       327 ~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~----------v~~~~~sp~~~~l~s~s~dg~-i~iwd~~~  395 (471)
                      ......++..++++..++.|..+|+++|+.+.........          +.+-....++ .++.++.++. +.+ |+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t  192 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT  192 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCC
Confidence            2333334778888888999999999999998777654322          1222233344 7777777875 555 9999


Q ss_pred             ccch
Q psy11350        396 RRLL  399 (471)
Q Consensus       396 ~~~~  399 (471)
                      ++.+
T Consensus       193 g~~~  196 (238)
T PF13360_consen  193 GEKL  196 (238)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            9966

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.59  E-value=4.8e-07  Score=79.41  Aligned_cols=112  Identities=21%  Similarity=0.327  Sum_probs=81.2

Q ss_pred             ceEEEEECCC-CCEEEEEecCCeEEEEECCCCcEE------EE----------eeCCCCCeEEEEEeCCCCEEEEEeCCC
Q psy11350        282 RVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQEV------LH----------QEGHGKPVYCMSFQGDGSVVATGGLDA  344 (471)
Q Consensus       282 ~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~------~~----------~~~~~~~v~~~~~s~d~~~l~t~~~dg  344 (471)
                      -|++..|+|. .+.|..++..|.|++-|++.....      ..          +.+-...|..+.|+++|+++++-+. -
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-l  301 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-L  301 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-c
Confidence            4778889994 456777888999999999853211      11          1122356788999999999987654 5


Q ss_pred             eEEEEeCCCC-eeEEEecccC------------cCE---EEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        345 FGRVWDLRTG-RCIMFLEGHL------------KSV---FSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       345 ~i~iwd~~~~-~~~~~~~~h~------------~~v---~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +|+|||++.. .++.++.-|.            ..|   ..+.||.|.+.+.+|+..+..-++-..
T Consensus       302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            7999999865 5677765442            233   357889899999999999888888644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.57  E-value=3.4e-05  Score=69.67  Aligned_cols=184  Identities=15%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             EEecCCCEEEEEe-----CCCcEEEEeCC-CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-------------
Q psy11350        159 SFSPDSQHVATAS-----WSGLCKLWTVP-ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-------------  219 (471)
Q Consensus       159 ~~s~~~~~l~tg~-----~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-------------  219 (471)
                      .||+||++|++.-     ..|.|-|||.. +.+.+..+..|.-.-..+.+.|++.     .|+.+..             
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~-----tLvVANGGI~Thpd~GR~kL  131 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE-----TLVVANGGIETHPDSGRAKL  131 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC-----EEEEEcCCCccCcccCceec
Confidence            7999999999863     35899999998 6788888888776777889999996     3444321             


Q ss_pred             -----CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE
Q psy11350        220 -----DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       220 -----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                           +-++.+.|..+|+.+......                                   ..++...|..+++.++|..
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp-----------------------------------~~~~~lSiRHLa~~~~G~V  176 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELP-----------------------------------PDLHQLSIRHLAVDGDGTV  176 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecC-----------------------------------ccccccceeeEEecCCCcE
Confidence                 112333333444433332110                                   0111224555555555544


Q ss_pred             EEEEecCCe-------EEEEECCCCcEEEE-------eeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEE
Q psy11350        295 LGTCCWDHS-------WRLWDLNQGQEVLH-------QEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       295 l~~~~~dg~-------i~iwd~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~  359 (471)
                      ++..-..|.       |-+++..  +.+..       ...-...+-+|++++++.++++.+ ..+.+.+||..+++.+..
T Consensus       177 ~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  177 AFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             EEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence            433332221       2222221  11111       123456788999999998776555 677899999999998876


Q ss_pred             ecccCcCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        360 LEGHLKSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       360 ~~~h~~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      ..-  ..+..++-.+++ +++|.+ .|.+
T Consensus       255 ~~l--~D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  255 VPL--PDACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             ccc--CceeeeeecCCc-eEEeCC-CccE
Confidence            543  457777777776 555544 4553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.56  E-value=3e-05  Score=75.50  Aligned_cols=225  Identities=12%  Similarity=-0.011  Sum_probs=133.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEE-EEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGA-IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE  241 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  241 (471)
                      ++..++.++.+|.++.+|..+|+.+....... .+.+ .... ++      .++.++.+|.|..+|..+|+.+..+....
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~-~~------~v~v~~~~g~l~ald~~tG~~~W~~~~~~  190 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS-DG------LVLVHTSNGMLQALNESDGAVKWTVNLDV  190 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE-CC------EEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence            35677788889999999999999988776432 2221 1111 22      47778889999999999999887775432


Q ss_pred             Ccc----eEEEEECCCCCEEEEEeCCCeEEe---ccccccccC--------CCCcceEEEEECC--CCCEEEEEecCCeE
Q psy11350        242 PFR----VSRIKFHPSGRFLGTCCWDHSWRL---DTPLANLEG--------HEPFRVSRIKFHP--SGRFLGTCCWDHSW  304 (471)
Q Consensus       242 ~~~----v~~~~~s~~~~~i~~~~~d~~~~~---~~~~~~~~~--------~~~~~v~~l~~~~--~~~~l~~~~~dg~i  304 (471)
                      ...    ..+...  .+..++.++.++.+..   .+.......        ........+..+|  .+..+++++.+|.+
T Consensus       191 ~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        191 PSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             CcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence            100    000011  1223444444544221   111000000        0000011111223  35677778889999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC-cCEEEEEEcCCCCEEEEEe
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL-KSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~s~s  383 (471)
                      ..+|..+++.+......  ....+..  ++..|+.++.+|.+..+|..+|+.+-....-. ....+...  .+.+|+.++
T Consensus       269 ~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~  342 (394)
T PRK11138        269 VALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD  342 (394)
T ss_pred             EEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence            99999999877554321  1112222  45677888899999999999998765433111 11222222  256788889


Q ss_pred             CCCcEEEEECCCccchheec
Q psy11350        384 EDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~  403 (471)
                      .||.|.+.|..+|+.+....
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEE
Confidence            99999999999998776543

>KOG1275|consensus

Probab=98.55  E-value=6.2e-07  Score=89.42  Aligned_cols=164  Identities=19%  Similarity=0.100  Sum_probs=112.8

Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                      ++..++.|+....+..+|+++.+..+...-....|+-+..  +++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4456888888888999999998776665544445655554  67899999999999999999999999999999999887


Q ss_pred             EEcCCCCEEEEEeC---------CCcEEEEECCCccchheeccc--------CCCc-cceeeccccceeeeec---ccCC
Q psy11350        371 DFSPDGYHLATGSE---------DNAVKIWDLRKRRLLKWCTQL--------LPNS-IGVTSLLTDLYIDVLE---SLNP  429 (471)
Q Consensus       371 ~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~--------~~~~-~~~~~~~~d~~~~~~~---~~~~  429 (471)
                      ..  .|+.|++||.         |.-|+|||++.-+.+.-+..+        +|.- ..++..+..+...+.+   ..++
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence            76  5889999985         455899999988776644332        2221 1112222223333333   2222


Q ss_pred             CcccccchhhhcccccceeeecccceeeeecCCeEEEe
Q psy11350        430 GIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMV  467 (471)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~  467 (471)
                      ..         ......+....+..+.+|++|+.||+.
T Consensus       302 ~~---------~~~~v~p~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  302 PA---------GVKMVNPNGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             cc---------ceeEEccCCCcceeEEecCCCceEEEe
Confidence            11         111222334447888999999999875

>KOG1920|consensus

Probab=98.53  E-value=4.5e-05  Score=78.98  Aligned_cols=233  Identities=15%  Similarity=0.132  Sum_probs=140.6

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ..|.++.|.-++..++.+...|.|.+-|..+..... ...-...|.+++|+|+..     .++..+..+++.+-.- +-.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee-----~l~liT~~~tll~mT~-~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEE-----LLALITGRQTLLFMTK-DFE  141 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCc-----EEEEEeCCcEEEEEec-ccc
Confidence            689999999999999999999999999987764332 223467899999999998     6777777777766442 222


Q ss_pred             ceeeecCC----CCcceEEEEECCCCCEEEEEeCCCeEEecccccccc--C--CCCcceEEEEECCCCCEEEEE-----e
Q psy11350        233 PLANLEGH----EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE--G--HEPFRVSRIKFHPSGRFLGTC-----C  299 (471)
Q Consensus       233 ~~~~~~~~----~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~--~--~~~~~v~~l~~~~~~~~l~~~-----~  299 (471)
                      ++...+.+    .......+.|-.....|-. + .|............  +  .....=+.|.|--||.++|+.     .
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrg-s-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRG-S-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             chhccccccccccccccceecccccceeeec-c-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence            22211110    0011122222211111100 0 00000000000000  0  001123569999999999983     3


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCeeEE----EecccCcCEEEEEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGRCIM----FLEGHLKSVFSVDF  372 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~~~----~~~~h~~~v~~~~~  372 (471)
                      ....|++||.+ |..-..-....+--.+++|-|.|.++++-.   .|+.|.+|. ++|-...    .+......+..++|
T Consensus       220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeee
Confidence            23789999987 543333333334456899999999988853   456788887 3443222    23333445999999


Q ss_pred             cCCCCEEEE---EeCCCcEEEEECCCc
Q psy11350        373 SPDGYHLAT---GSEDNAVKIWDLRKR  396 (471)
Q Consensus       373 sp~~~~l~s---~s~dg~i~iwd~~~~  396 (471)
                      +.++..|+.   ......|++|-+.+-
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCe
Confidence            999999887   444455999988764

>KOG2066|consensus

Probab=98.51  E-value=8.2e-06  Score=80.70  Aligned_cols=140  Identities=17%  Similarity=0.251  Sum_probs=102.0

Q ss_pred             CCEEEEEeCCCeEEeccccccc---cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEE
Q psy11350        254 GRFLGTCCWDHSWRLDTPLANL---EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSF  330 (471)
Q Consensus       254 ~~~i~~~~~d~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  330 (471)
                      +++++.|+.+|.+.+.+.....   ..|...       ..+|.++++|+.||+|.|..+.+.+....+. ...++.++++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial  120 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIAL  120 (846)
T ss_pred             cceeeeccccceEEEEecCCccccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEe
Confidence            5788888888887765433322   222111       5589999999999999999998887665554 4678999999


Q ss_pred             eCC-----CCEEEEEeCCCeEEEEeCC---CCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        331 QGD-----GSVVATGGLDAFGRVWDLR---TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       331 s~d-----~~~l~t~~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      +|+     .+.+++||.-| +.++.-+   ....+ .+....++|.++.|.  |.++|-++++| |+|||+.+++.+..+
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence            997     56899999888 7776532   11222 455567899999994  77888776665 899999999887766


Q ss_pred             cccC
Q psy11350        403 TQLL  406 (471)
Q Consensus       403 ~~~~  406 (471)
                      +.+.
T Consensus       196 ~~p~  199 (846)
T KOG2066|consen  196 PPPS  199 (846)
T ss_pred             CCCC
Confidence            5443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=4.8e-05  Score=75.14  Aligned_cols=63  Identities=24%  Similarity=0.212  Sum_probs=44.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC----C-eeEEEecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCccc
Q psy11350        333 DGSVVATGGLDAFGRVWDLRT----G-RCIMFLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDLRKRRL  398 (471)
Q Consensus       333 d~~~l~t~~~dg~i~iwd~~~----~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~  398 (471)
                      +|++...  .++.|.+.|.++    + ..+..+. -......++++|||+++++++ .+++|.|.|+.+.+.
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence            4444333  246688888887    3 3444443 446788999999999887665 589999999988653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.49  E-value=0.00015  Score=70.64  Aligned_cols=224  Identities=14%  Similarity=0.004  Sum_probs=128.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCC----------CEE-EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDC----------NVG-AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----------~v~-~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      .+..|++++.+|.|.-+|..+|+.+........          .+. .+..  .+.     .++.++.+|.+..+|..+|
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-----~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGG-----KVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECC-----EEEEEcCCCEEEEEECCCC
Confidence            356788888899999999999998877653220          000 0111  122     4777888999999999999


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEE---eccccccccCCCCcceEEE--EECC--CCCEEEEEecCCeE
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR---LDTPLANLEGHEPFRVSRI--KFHP--SGRFLGTCCWDHSW  304 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~---~~~~~~~~~~~~~~~v~~l--~~~~--~~~~l~~~~~dg~i  304 (471)
                      +.+........ ...+..+  .+..++++..++.+.   ..+...........+...+  .-+|  .+..++.++.+|.+
T Consensus       141 ~~~W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v  217 (394)
T PRK11138        141 EVAWQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRV  217 (394)
T ss_pred             CCcccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEE
Confidence            98887664432 1111111  133444454444321   1111111000000000000  0011  13457778889999


Q ss_pred             EEEECCCCcEEEEeeCCC----C---CeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        305 RLWDLNQGQEVLHQEGHG----K---PVYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~----~---~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ..+|..+++.+.......    .   ....+..+|  .+..+++++.+|.+..+|..+|+.+-....  .....+..  .
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~  293 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--D  293 (394)
T ss_pred             EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--E
Confidence            999999988765432110    0   011111223  345677778899999999999987655431  11122222  4


Q ss_pred             CCEEEEEeCCCcEEEEECCCccchh
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      +..|+.++.+|.+..+|..+++.+-
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W  318 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELW  318 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEE
Confidence            5677788899999999999987654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.47  E-value=0.00018  Score=69.51  Aligned_cols=91  Identities=14%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             EEEEECCCCcEEE---EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEE
Q psy11350        304 WRLWDLNQGQEVL---HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       304 i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  380 (471)
                      ..+|++...+...   +-......|.+++++|+...++.|+.||.|.+||...+....  ..+.-.++.++|+|+|.+++
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEE
Confidence            4567766553221   123567889999999999999999999999999987764332  23446688999999999999


Q ss_pred             EEeCCCcEEEEECCCc
Q psy11350        381 TGSEDNAVKIWDLRKR  396 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~  396 (471)
                      +|+..|.+.+||+.-.
T Consensus       316 V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  316 VGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCceEEEEEeecC
Confidence            9999999999998644

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.38  E-value=0.00037  Score=63.89  Aligned_cols=247  Identities=13%  Similarity=0.081  Sum_probs=137.3

Q ss_pred             EEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecCCC-CE------EEEEEeeCCCCCCccEEEEEeC
Q psy11350        157 YCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGHDC-NV------GAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~~-~v------~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .+.+|||++.+++++          ..-.|.+||..+......+.-... ..      ..+.++.++..   .++.-.+-
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~---~~V~N~TP  116 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKF---LYVQNFTP  116 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSE---EEEEEESS
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcE---EEEEccCC
Confidence            356899999988754          234799999999887775543222 11      23455555551   12222344


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeE---Eeccc-------cccccCCCCcceEEEEEC
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW---RLDTP-------LANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~---~~~~~-------~~~~~~~~~~~v~~l~~~  289 (471)
                      -.+|.|-|+..++.+..+.....   ..+.-+. .+.|.+-|.||.+   .+...       ...+.......+..-++.
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~  192 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPGC---WLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS  192 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTSE---EEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred             CCeEEEEECCCCceeeeecCCCE---EEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence            45677778877777666654321   1111122 2346666666662   22211       011111111112233344


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCcEEE--EeeCC----------CCCeEEEEEeCCCCEEEEEe---CCC-------eEE
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGH----------GKPVYCMSFQGDGSVVATGG---LDA-------FGR  347 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~----------~~~v~~~~~s~d~~~l~t~~---~dg-------~i~  347 (471)
                      ..+..++..+.+|.|+-.|+.......  .+..-          .+.-.-+++++..+.|++--   .++       .|.
T Consensus       193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW  272 (342)
T PF06433_consen  193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW  272 (342)
T ss_dssp             TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred             CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence            455566668889999999987654321  11110          12223477887665555432   122       488


Q ss_pred             EEeCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEE-eCCCcEEEEECCCccchheecccCCCccc
Q psy11350        348 VWDLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATG-SEDNAVKIWDLRKRRLLKWCTQLLPNSIG  411 (471)
Q Consensus       348 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  411 (471)
                      ++|+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.|.+||..+|+.+..+......+..
T Consensus       273 v~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l  337 (342)
T PF06433_consen  273 VYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTL  337 (342)
T ss_dssp             EEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--E
T ss_pred             EEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceE
Confidence            899999999998873 34688999998755 66554 45789999999999999988765554433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114|consensus

Probab=98.33  E-value=0.00011  Score=73.46  Aligned_cols=196  Identities=12%  Similarity=0.053  Sum_probs=130.6

Q ss_pred             EEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe-----EEeccc----
Q psy11350        201 EFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-----WRLDTP----  271 (471)
Q Consensus       201 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-----~~~~~~----  271 (471)
                      +|++.+.     .++.|+.+|.|.+++- .-+.+..+..+....+..+....+..++++.+.|+.     +.+|..    
T Consensus        30 c~~s~~~-----~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   30 CCSSSTG-----SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EEcCCCc-----eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            3555555     6999999999988873 344446677666533555555555577887777654     333221    


Q ss_pred             -----ccc--------ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC----CCcEEEEeeCCCCCeEEEEEeCCC
Q psy11350        272 -----LAN--------LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN----QGQEVLHQEGHGKPVYCMSFQGDG  334 (471)
Q Consensus       272 -----~~~--------~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~d~  334 (471)
                           ...        .....+.++++++.+.+-+.+|+|-.+|.|..+.-.    .+...........+|+.+.+..++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence                 111        111235678899999999999999999999998532    122222233446899999999998


Q ss_pred             CEEEEEeCCCeEEEEeCCCCee-EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        335 SVVATGGLDAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       335 ~~l~t~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +.++-......|.+|.+....+ ...+..|..++.|..+++....+++++ +..|.+|+.+..++-..+.
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            8733334456799999874332 455778888999999998655466654 4468999988666555444

>KOG4649|consensus

Probab=98.31  E-value=0.0014  Score=56.88  Aligned_cols=94  Identities=12%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      ..+++.|+..+.+.--|..+|+....-.- ..+|-+-+.. -++     .++.|+..|.+.+.+..+|.....+......
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgd-----fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGD-----FVVLGCYSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECC-----EEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence            46788999999999999999988764321 2344443333 333     6899999999999999999877776644421


Q ss_pred             ceEEEEECCCCCEEEEEeCCCe
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                       -......+++..|..++.|+.
T Consensus        96 -k~~a~~d~~~glIycgshd~~  116 (354)
T KOG4649|consen   96 -KVRAQCDFDGGLIYCGSHDGN  116 (354)
T ss_pred             -ccceEEcCCCceEEEecCCCc
Confidence             112233444444444444444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.30  E-value=0.0012  Score=64.23  Aligned_cols=216  Identities=10%  Similarity=0.040  Sum_probs=118.9

Q ss_pred             EEecCCCEEEEEeCC----------C-cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        159 SFSPDSQHVATASWS----------G-LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       159 ~~s~~~~~l~tg~~d----------g-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      +.+|.|..+|....+          . .|.||+. .|+.+..+.-..+.|.++.|..+..      |+....||.++++|
T Consensus        35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~------LvvV~~dG~v~vy~  107 (410)
T PF04841_consen   35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE------LVVVQSDGTVRVYD  107 (410)
T ss_pred             EEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe------EEEEEcCCEEEEEe
Confidence            445666555555433          2 5999995 5677777664448999999988664      77888999999999


Q ss_pred             CCCCcceeeecCCC---CcceE-----EEEECCCCCEEEEEeCCCe-EEeccccc--------cccC-----CCCcceEE
Q psy11350        228 LDKDTPLANLEGHE---PFRVS-----RIKFHPSGRFLGTCCWDHS-WRLDTPLA--------NLEG-----HEPFRVSR  285 (471)
Q Consensus       228 ~~~~~~~~~~~~~~---~~~v~-----~~~~s~~~~~i~~~~~d~~-~~~~~~~~--------~~~~-----~~~~~v~~  285 (471)
                      +. |+.  .+....   ...|.     ...+..+|-.+++  .++. +.+.....        ....     +.......
T Consensus       108 ~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  108 LF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             CC-Cce--eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence            85 333  221111   00121     1122333422222  2222 11111000        0000     00000111


Q ss_pred             -EEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-
Q psy11350        286 -IKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-  363 (471)
Q Consensus       286 -l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-  363 (471)
                       ..++.+....+....++.+.+.+-...+.   + ...+++..+++||+|++||.-..+|.+.|...+-.+.+..+... 
T Consensus       183 i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~  258 (410)
T PF04841_consen  183 IPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS  258 (410)
T ss_pred             ceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc
Confidence             23444445555555556666444332211   1 13468999999999999999999999999987666666666543 


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      ......+.|.-+...++.-  ...|.+..
T Consensus       259 ~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  259 KSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            3466778887654433333  33444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=1e-05  Score=77.85  Aligned_cols=80  Identities=11%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .......|.|++++|+.+.|+.|+.||.|.+||...+...  +....-..+.++|+|++.     ++++|+..|.+.+||
T Consensus       255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-----i~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-----IFVVGSEQGELQCFD  327 (545)
T ss_pred             EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-----EEEEEcCCceEEEEE
Confidence            3467889999999999999999999999999998765333  223445678999999998     899999999999999


Q ss_pred             CCCCcce
Q psy11350        228 LDKDTPL  234 (471)
Q Consensus       228 ~~~~~~~  234 (471)
                      +.-....
T Consensus       328 ~ALspi~  334 (545)
T PF11768_consen  328 MALSPIK  334 (545)
T ss_pred             eecCccc
Confidence            8655433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00081  Score=66.72  Aligned_cols=220  Identities=11%  Similarity=0.016  Sum_probs=133.7

Q ss_pred             cCCCEEEEEeC-CCcEEEEeCCCCceEEEeec-CCCCEEEEEE-------------------eeCCCCCCccEEEEEeCC
Q psy11350        162 PDSQHVATASW-SGLCKLWTVPECELVQTFRG-HDCNVGAIEF-------------------HPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       162 ~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~-------------------~~~~~~~~~~~l~s~~~d  220 (471)
                      .||++|+.-.. +..|-..++...++-+.+.- ....+..++|                   .|++..    +..+.-..
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~----l~~~~ey~  214 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD----LDDPKKYR  214 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE----eeccccee
Confidence            47888888764 56677777766555443321 1122223333                   233321    11223334


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEE--------CCCC
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKF--------HPSG  292 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~--------~~~~  292 (471)
                      +.+.+.|..+.+....+....  ....+.++|+|+++++.+.+...-  .....+......  ..+.|        .++|
T Consensus       215 ~~vSvID~etmeV~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G--~tl~em~a~e~d--~~vvfni~~iea~vkdG  288 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEG--VTLAEMMAAERD--WVVVFNIARIEEAVKAG  288 (635)
T ss_pred             EEEEEEECccceEEEEEEeCC--CcccceECCCCCEEEEeccCcccC--cceeeeccccCc--eEEEEchHHHHHhhhCC
Confidence            567777777766655554433  456788999999998887432100  000111111011  23333        3467


Q ss_pred             CEEEEEecCCeEEEEECCC----C-cEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCee----------
Q psy11350        293 RFLGTCCWDHSWRLWDLNQ----G-QEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRC----------  356 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~----------  356 (471)
                      ++...  .++.|.++|..+    + +.+..+. -......+.++|||+++++++ .+++|.|+|+.+.+.          
T Consensus       289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             CEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence            76665  367899999998    3 3444443 455567899999999877665 588999999987542          


Q ss_pred             --EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        357 --IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       357 --~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                        +....- .......+|.++|+...|---|..|..||+.+
T Consensus       366 ~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        366 AVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              233332 23455678999999888888999999999986

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.0011  Score=59.00  Aligned_cols=196  Identities=16%  Similarity=0.177  Sum_probs=113.4

Q ss_pred             EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe
Q psy11350        189 TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  268 (471)
Q Consensus       189 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~  268 (471)
                      .+.+-...+..|+|+|+...    ++++....+.|..++. +|+.+..+..........+++..++.++++.-.++.+..
T Consensus        16 ~l~g~~~e~SGLTy~pd~~t----LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGT----LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTE----EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             ECCCccCCccccEEcCCCCe----EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            34455567999999998764    6777788888888886 577887776555447889999888877776655565322


Q ss_pred             c---cc--------cc--c--ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCC---CcEEEE--e------eCCC
Q psy11350        269 D---TP--------LA--N--LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ---GQEVLH--Q------EGHG  322 (471)
Q Consensus       269 ~---~~--------~~--~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~--~------~~~~  322 (471)
                      .   ..        ..  .  +.......+-.++|+|.++.|+++-...-..+|.+..   ...+..  .      ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            1   00        00  1  1111234588999999888888887776666666653   111111  1      1234


Q ss_pred             CCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccC---------cCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy11350        323 KPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL---------KSVFSVDFSPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       323 ~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~sp~~~~l~s~s~dg~i~iw  391 (471)
                      ..+.+++++| .+.+++.+.....|.++| .+|+.+..+.-..         ...-.|+|.++|++.++ +.-+..++|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            5578999999 566777788888999999 6777665543211         35789999999875555 466655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621|consensus

Probab=98.19  E-value=7.7e-05  Score=73.05  Aligned_cols=161  Identities=12%  Similarity=0.090  Sum_probs=104.0

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      |...|.--+++..+++++.|+..|.+++|+-..++....-. +-.+.+..+..+++..     ++|.|+..|.|.++-++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-----lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-----LVAAGTASGRVSVFQLN  106 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-----hhhhhcCCceEEeehhh
Confidence            44555555678889999999999999999977665443222 2344555666777665     78889999999999876


Q ss_pred             CCcceee-ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        230 KDTPLAN-LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       230 ~~~~~~~-~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      .+.+-.. +..+.                                  ...++..|++++|++++..+++|...|+|.+-.
T Consensus       107 ~~~p~~~~~~t~~----------------------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen  107 KELPRDLDYVTPC----------------------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ccCCCcceeeccc----------------------------------cccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence            6432111 10000                                  011256899999999999999999999999988


Q ss_pred             CCCCc----EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        309 LNQGQ----EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       309 ~~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      +.+..    ....+..-...|-.+++. ++.+|++... . -.+++++.
T Consensus       153 L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-r-~~Lc~tE~  198 (726)
T KOG3621|consen  153 LDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-R-CILCQTEA  198 (726)
T ss_pred             echhhhhccccceeeccCcceEEeecc-cceehHhhhh-h-hheeecch
Confidence            87621    122233345677777765 3444444333 2 23455543

>KOG4649|consensus

Probab=98.18  E-value=0.0014  Score=56.95  Aligned_cols=216  Identities=11%  Similarity=0.041  Sum_probs=115.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      -|++++.|+..|.+++.+.++|.....+..-..--......+++.     ++..|+.|++....|..+..++.+.+....
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g-----lIycgshd~~~yalD~~~~~cVykskcgG~  136 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG-----LIYCGSHDGNFYALDPKTYGCVYKSKCGGG  136 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc-----eEEEecCCCcEEEecccccceEEecccCCc
Confidence            367899999999999999999988877764322112334455665     799999999999999999888887665443


Q ss_pred             cceEEEEECCCCCEEEEEeCCCe-EEecccc---ccccCC-CCcceEE--EEECCCCCEEEEEecCCeEEEEECCCCcEE
Q psy11350        243 FRVSRIKFHPSGRFLGTCCWDHS-WRLDTPL---ANLEGH-EPFRVSR--IKFHPSGRFLGTCCWDHSWRLWDLNQGQEV  315 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~~d~~-~~~~~~~---~~~~~~-~~~~v~~--l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  315 (471)
                       ...+-+..|....++++...|. +.+....   ..+-.+ ...++.+  ++.   +..+..+.-||.+.-+| ..|+.+
T Consensus       137 -~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qv  211 (354)
T KOG4649|consen  137 -TFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQV  211 (354)
T ss_pred             -eeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEE
Confidence             3444556663334444444443 3321110   111000 0111111  111   33455666677777777 555555


Q ss_pred             EEeeCCCCCeEE-EEEe-CCCCEEEEEeCCCe--------EEEEeCCCCeeEEEecccCcCEEEEEEcC----CCCEEEE
Q psy11350        316 LHQEGHGKPVYC-MSFQ-GDGSVVATGGLDAF--------GRVWDLRTGRCIMFLEGHLKSVFSVDFSP----DGYHLAT  381 (471)
Q Consensus       316 ~~~~~~~~~v~~-~~~s-~d~~~l~t~~~dg~--------i~iwd~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~s  381 (471)
                      .... ..++|.. -+-+ |..+.+..+..+..        -.+|..++|.....+-.   +-..++++.    ..++|..
T Consensus       212 wr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~  287 (354)
T KOG4649|consen  212 WRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRR  287 (354)
T ss_pred             Eeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhh
Confidence            5332 2333321 1111 22233443333332        23566666533322211   111222221    2456778


Q ss_pred             EeCCCcEEEEE
Q psy11350        382 GSEDNAVKIWD  392 (471)
Q Consensus       382 ~s~dg~i~iwd  392 (471)
                      ++.||.+.|--
T Consensus       288 ~s~dgkv~il~  298 (354)
T KOG4649|consen  288 SSGDGKVMILM  298 (354)
T ss_pred             hcCCCcEEEEE
Confidence            88999887763

>KOG1008|consensus

Probab=98.18  E-value=6.2e-07  Score=86.18  Aligned_cols=204  Identities=17%  Similarity=0.193  Sum_probs=131.8

Q ss_pred             CCcCeEEEEEecCC--CEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEe----CCCc
Q psy11350        151 DTRPISYCSFSPDS--QHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA----QDGS  222 (471)
Q Consensus       151 h~~~V~~~~~s~~~--~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~----~dg~  222 (471)
                      .+..+.|++++-+.  ..++.|..+|.|.+-.+....-  .....+|..+.++++|++...+    .||.|-    .|..
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn----~LAagldkhrnds~  130 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTN----HLAAGLDKHRNDSS  130 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHH----HHHhhhhhhcccCC
Confidence            45667788776554  4688999999999988754322  2344577889999999998553    455542    3567


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      +.|||+.++-..         +-.+..|+.                         .......+++|..+.+.+.+|....
T Consensus       131 ~~Iwdi~s~ltv---------Pke~~~fs~-------------------------~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen  131 LKIWDINSLLTV---------PKESPLFSS-------------------------STLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ccceecccccCC---------Ccccccccc-------------------------ccccCccccccccCcchhhcccccc
Confidence            999999776220         001111110                         0022355888888889999999999


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEe-CCCC-eeEEEecccC----cCEEEEEEcCC
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWD-LRTG-RCIMFLEGHL----KSVFSVDFSPD  375 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd-~~~~-~~~~~~~~h~----~~v~~~~~sp~  375 (471)
                      .+.++|++... .....-.+..+..+..+| .+.++++.. ||.|.+|| .+.- .++..+....    ..+..++|+|.
T Consensus       177 ~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  177 SVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             hhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence            99999998432 111122234566777888 777877665 99999999 3332 2333332122    24899999994


Q ss_pred             C-CEEEEEeCC-CcEEEEECC
Q psy11350        376 G-YHLATGSED-NAVKIWDLR  394 (471)
Q Consensus       376 ~-~~l~s~s~d-g~i~iwd~~  394 (471)
                      . ..+++.+.| ++|+++|+.
T Consensus       255 rtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  255 RTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CcchhhhhccCcceEEEeccc
Confidence            3 345555544 789999985

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.17  E-value=0.0012  Score=66.15  Aligned_cols=247  Identities=13%  Similarity=0.054  Sum_probs=141.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCC-----EE-EEEEeeCCCCCCccEEEEEe---------CCCcEEEEeCC
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCN-----VG-AIEFHPLPSEGAVCSLASCA---------QDGSVKLWSLD  229 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~-~l~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~  229 (471)
                      ..++.++.+|.|+-+|..+|+.+..+......     +. ...+.. +      .++.++         .+|.+..+|..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~------~v~vg~~~~~~~~~~~~g~v~alD~~  183 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-K------LVIIGSSGAEFFACGVRGALRAYDVE  183 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-C------EEEEeccccccccCCCCcEEEEEECC
Confidence            67888888999999999999999877643221     11 111211 1      344443         36789999999


Q ss_pred             CCcceeeecCCCCc-------------------ce-EEEEECCCCCEEEEEeCCC------------------e---EEe
Q psy11350        230 KDTPLANLEGHEPF-------------------RV-SRIKFHPSGRFLGTCCWDH------------------S---WRL  268 (471)
Q Consensus       230 ~~~~~~~~~~~~~~-------------------~v-~~~~~s~~~~~i~~~~~d~------------------~---~~~  268 (471)
                      +|+.+..+......                   .+ ...++.+.+..+++++.++                  .   ++.
T Consensus       184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~  263 (488)
T cd00216         184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA  263 (488)
T ss_pred             CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence            99888776542110                   01 1344555667777776554                  1   111


Q ss_pred             cccccccc------------CCCCcceEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCC
Q psy11350        269 DTPLANLE------------GHEPFRVSRIKFHPSGR---FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       269 ~~~~~~~~------------~~~~~~v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d  333 (471)
                      .+......            ......+..+. .-++.   .+++++.+|.+..+|.++|+.+.......   ..++.+| 
T Consensus       264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-  338 (488)
T cd00216         264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-  338 (488)
T ss_pred             CCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-
Confidence            11111111            00000011111 01233   57788889999999999999887654211   1223333 


Q ss_pred             CCEEEEE------------------eCCCeEEEEeCCCCeeEEEecccC--------cCE--EEEEEcCCCCEEEEEeCC
Q psy11350        334 GSVVATG------------------GLDAFGRVWDLRTGRCIMFLEGHL--------KSV--FSVDFSPDGYHLATGSED  385 (471)
Q Consensus       334 ~~~l~t~------------------~~dg~i~iwd~~~~~~~~~~~~h~--------~~v--~~~~~sp~~~~l~s~s~d  385 (471)
                       ..++.+                  ..+|.+.-.|+.+|+.+-......        .+.  ..+..  .+..|+.++.|
T Consensus       339 -~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~d  415 (488)
T cd00216         339 -GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAAD  415 (488)
T ss_pred             -ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCC
Confidence             233332                  246788889999998776654320        111  11222  46788899999


Q ss_pred             CcEEEEECCCccchheecccCCCccceeeccccceeeeecc
Q psy11350        386 NAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLES  426 (471)
Q Consensus       386 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  426 (471)
                      |.|+.+|.++|+.+.......+.....+....+..+.+...
T Consensus       416 G~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~  456 (488)
T cd00216         416 GYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM  456 (488)
T ss_pred             CeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence            99999999999999877654333333333333555544443

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.17  E-value=0.0043  Score=60.96  Aligned_cols=238  Identities=16%  Similarity=0.059  Sum_probs=127.5

Q ss_pred             cCeEEEEEecCCCEEEEE-eCCC----cEEEEeCCCCceEEEe-ecCCCCEEEEEEeeCCCCCCccEEEEEeCC------
Q psy11350        153 RPISYCSFSPDSQHVATA-SWSG----LCKLWTVPECELVQTF-RGHDCNVGAIEFHPLPSEGAVCSLASCAQD------  220 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg-~~dg----~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d------  220 (471)
                      ..+..+++||||++||.+ +..|    .|+++|+.+|+.+... ...  ....+.|.+++..    ++.+...+      
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~----~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKG----FFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSE----EEEEECSTTTSS-C
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCE----EEEEEeCccccccc
Confidence            344568899999998865 3344    5999999999776532 221  1223999999873    34443222      


Q ss_pred             ----CcEEEEeCCCCcce--eeecCCCCcc-eEEEEECCCCCEEEEEeCCCe-----EEe--cc------ccccccCCCC
Q psy11350        221 ----GSVKLWSLDKDTPL--ANLEGHEPFR-VSRIKFHPSGRFLGTCCWDHS-----WRL--DT------PLANLEGHEP  280 (471)
Q Consensus       221 ----g~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~s~~~~~i~~~~~d~~-----~~~--~~------~~~~~~~~~~  280 (471)
                          ..|..|.+.+...-  ..+....... ...+..++++++++..+..+.     +.+  ..      ....+.....
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence                23788888776543  4455544434 678999999999887655443     111  11      1111222212


Q ss_pred             cceEEEEECCCCCEEEEEe---cCCeEEEEECCCCcE---EEEeeCCCCC--eEEEEEeCCCCEEE-EEeCCC--eEEEE
Q psy11350        281 FRVSRIKFHPSGRFLGTCC---WDHSWRLWDLNQGQE---VLHQEGHGKP--VYCMSFQGDGSVVA-TGGLDA--FGRVW  349 (471)
Q Consensus       281 ~~v~~l~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~--v~~~~~s~d~~~l~-t~~~dg--~i~iw  349 (471)
                      .....+... .+.+++...   ..+.|...++.....   ...+..+...  +..+..  .+.+|+ ....++  .|+++
T Consensus       278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence            222333333 333333322   235677778776652   2245555553  444444  344444 444444  48899


Q ss_pred             eCCCCeeEEEecc-cCcCEEEEEEcCCCCEE-EEEeC---CCcEEEEECCCccch
Q psy11350        350 DLRTGRCIMFLEG-HLKSVFSVDFSPDGYHL-ATGSE---DNAVKIWDLRKRRLL  399 (471)
Q Consensus       350 d~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l-~s~s~---dg~i~iwd~~~~~~~  399 (471)
                      ++..+.....+.. -.+.|..+...+++..+ ++.+.   -+++..||+.+++..
T Consensus       355 ~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  355 DLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             ETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             ECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            9983444433332 33456666655655443 33322   367888999888754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617|consensus

Probab=98.14  E-value=2.8e-05  Score=77.31  Aligned_cols=225  Identities=13%  Similarity=0.103  Sum_probs=132.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL  234 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  234 (471)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|.     .++++..-|.|.+|....-..+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~-----~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT-----VLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC-----eEEEcCCCceeEEEEeeecccc
Confidence            45699999988899999899999999888776666678999999999999998     7999999999999987632222


Q ss_pred             ee-----ecCCCCcceEEEEECCCCCE------EEEEeCCCeEEe---ccccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        235 AN-----LEGHEPFRVSRIKFHPSGRF------LGTCCWDHSWRL---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       235 ~~-----~~~~~~~~v~~~~~s~~~~~------i~~~~~d~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      ..     ..........+..+++++.-      .++.+.+..++-   |.+...-..     . .-.=.|+|..|+.++.
T Consensus       137 q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs-----~-~ksgv~~g~~F~~~~~  210 (1416)
T KOG3617|consen  137 QTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERS-----D-EKSGVPKGTEFLFAGK  210 (1416)
T ss_pred             ccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcc-----c-cccCCCCCcEEEEEcC
Confidence            11     11112224566667777432      233333333331   111000000     0 0011467888999999


Q ss_pred             CCeEEEEECCCCcEEEEee----------CCCCCeEEEE-EeCCCCEEE-----------------EEeCCCeEEEEeCC
Q psy11350        301 DHSWRLWDLNQGQEVLHQE----------GHGKPVYCMS-FQGDGSVVA-----------------TGGLDAFGRVWDLR  352 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~-~s~d~~~l~-----------------t~~~dg~i~iwd~~  352 (471)
                      +|+|+..|-. +++.....          +....|.++. +..+.-+++                 .|+..|.|-+=.. 
T Consensus       211 ~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-  288 (1416)
T KOG3617|consen  211 SGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-  288 (1416)
T ss_pred             CceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-
Confidence            9999988843 33322211          1122222211 111100000                 1122222211110 


Q ss_pred             CCe----eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        353 TGR----CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       353 ~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +|-    .-..+ .....++|++++.-+..|+.|...|.+.+|--
T Consensus       289 sGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~  332 (1416)
T KOG3617|consen  289 SGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD  332 (1416)
T ss_pred             cccccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence            110    00011 12357999999999999999999999999953

>KOG1832|consensus

Probab=98.13  E-value=5.1e-06  Score=82.84  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=99.2

Q ss_pred             ccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC--eEEE
Q psy11350        271 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA--FGRV  348 (471)
Q Consensus       271 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg--~i~i  348 (471)
                      +...+..+ ....+|++|+-+.++|++|+..|.|++|++.+|........|+.+|+.+.-+.||..+++.+.-.  -..+
T Consensus      1093 ~w~~frd~-~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDE-TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cchhhhcc-ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            33444555 35689999999999999999999999999999999999999999999999999999888776544  3678


Q ss_pred             EeCCC-CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        349 WDLRT-GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       349 wd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      |++.+ +.+.+++.    .-.++.|+.....-+.|+.-....+||+.++.++.++
T Consensus      1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence            99864 34454554    3456788876444455555567889999999988874

>KOG1645|consensus

Probab=98.11  E-value=0.00017  Score=66.09  Aligned_cols=221  Identities=14%  Similarity=0.114  Sum_probs=127.0

Q ss_pred             EEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC
Q psy11350        176 CKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR  255 (471)
Q Consensus       176 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~  255 (471)
                      +++.+..+.+....+.+|...|..++|+|....    ++..++.+..|+|.|+.+...+..+..+.  .+++++|.-|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G----Ll~~asl~nkiki~dlet~~~vssy~a~~--~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG----LLGLASLGNKIKIMDLETSCVVSSYIAYN--QIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccc----eeeeeccCceEEEEecccceeeeheeccC--CceeeeeccCCc
Confidence            667776677777777788889999999998875    68889999999999999999988888874  899999988765


Q ss_pred             -EEEEEeCCCeEEec---c---ccccccC-CCCcceEEEEECC------CCCEEEEEecCCeEEEEECCC--C--cEEEE
Q psy11350        256 -FLGTCCWDHSWRLD---T---PLANLEG-HEPFRVSRIKFHP------SGRFLGTCCWDHSWRLWDLNQ--G--QEVLH  317 (471)
Q Consensus       256 -~i~~~~~d~~~~~~---~---~~~~~~~-~~~~~v~~l~~~~------~~~~l~~~~~dg~i~iwd~~~--~--~~~~~  317 (471)
                       +|+.|...|.+.+.   .   +...+.+ -...+|..++.-+      .|.+|+..+.+  +..|.+.-  +  -++..
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle  326 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE  326 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence             56666677775542   2   2222222 1122444444322      34444444322  34444321  1  12222


Q ss_pred             eeCCCCCeEEEEEeCCCC-EEEEEeCCC------eEE-EEeCCCCeeEEEec-ccCcC-------EEEEEEcCCCCEEE-
Q psy11350        318 QEGHGKPVYCMSFQGDGS-VVATGGLDA------FGR-VWDLRTGRCIMFLE-GHLKS-------VFSVDFSPDGYHLA-  380 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~~-~l~t~~~dg------~i~-iwd~~~~~~~~~~~-~h~~~-------v~~~~~sp~~~~l~-  380 (471)
                      +. ..+...++++.+-.+ .|++.-.+.      .|- --|..+|.++..-+ ++.+.       -..+.-.++.++++ 
T Consensus       327 le-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~  405 (463)
T KOG1645|consen  327 LE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV  405 (463)
T ss_pred             cC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence            22 234455566655333 344332211      011 11223443333221 12110       01122234445554 


Q ss_pred             EEeCCCcEEEEECCCccchheeccc
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +|...+.+.+||..++..+++++..
T Consensus       406 ~gd~tn~lil~D~~s~evvQ~l~~~  430 (463)
T KOG1645|consen  406 VGDSTNELILQDPHSFEVVQTLALS  430 (463)
T ss_pred             ecCCcceeEEeccchhheeeecccC
Confidence            4556688999999999999887654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.07  E-value=0.0012  Score=63.50  Aligned_cols=226  Identities=14%  Similarity=0.060  Sum_probs=126.6

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-------------------------------------------EEEe
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECEL-------------------------------------------VQTF  190 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~-------------------------------------------~~~~  190 (471)
                      .|+++.|+++..-|++|...|.|.||.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999989999999999999986521100                                           1112


Q ss_pred             ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee-------cCCCCcceEEEEEC-----CCC---C
Q psy11350        191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL-------EGHEPFRVSRIKFH-----PSG---R  255 (471)
Q Consensus       191 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~s-----~~~---~  255 (471)
                      ....++|++++.+.-|      +++.|..+|.+.|.|++....+..-       .......++++.|+     .|+   -
T Consensus        83 ~~~~g~vtal~~S~iG------Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG------FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             ---S-SEEEEEE-BTS------EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             eccCCcEeEEecCCCc------EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            2346899999998776      6999999999999999776655441       11223357777775     233   4


Q ss_pred             EEEEEeCCCeEEecccc----cc-------ccCCCCcceEEEE-ECCC-C-------------------CEEEEEecCCe
Q psy11350        256 FLGTCCWDHSWRLDTPL----AN-------LEGHEPFRVSRIK-FHPS-G-------------------RFLGTCCWDHS  303 (471)
Q Consensus       256 ~i~~~~~d~~~~~~~~~----~~-------~~~~~~~~v~~l~-~~~~-~-------------------~~l~~~~~dg~  303 (471)
                      .+++|...|.+...+..    ..       .......+|..+. |+.+ |                   +.+++...+..
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            67888888874432111    00       0111123344333 3211 0                   22444555788


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEe-----CCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC----cCEEEEEEcC
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQ-----GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL----KSVFSVDFSP  374 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~sp  374 (471)
                      ++++...+.+..............+.+-     ..+..|++-..+|.|++|.+..-+.+..+.-+.    ..+....+++
T Consensus       237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            9999998887766655332333344552     356678888899999999999988887766432    2344566788


Q ss_pred             CCCEEEEEeCC
Q psy11350        375 DGYHLATGSED  385 (471)
Q Consensus       375 ~~~~l~s~s~d  385 (471)
                      +|..++-.+..
T Consensus       317 ~Gdi~~~~gps  327 (395)
T PF08596_consen  317 NGDIFYWTGPS  327 (395)
T ss_dssp             TS-EEEE-SSS
T ss_pred             CCCEEEEeCcc
Confidence            88877666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.06  E-value=0.00061  Score=66.34  Aligned_cols=177  Identities=14%  Similarity=0.126  Sum_probs=99.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      .-....+.++|+|+++++++ +|.-.|+.....+....     +.-...+|.+.+.      +++-...++|.|+.--++
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~------yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR------YAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE------EEEE-TTS-EEEEETTEE
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCcc------EEEEECCCeEEEEEcCcc
Confidence            34567889999999999976 88888888544443332     2234788988553      777777889999642222


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCC
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  311 (471)
                      .....+...                                        ..+..|-.   |..|+..+. +.|.+||+.+
T Consensus       100 ~~~k~i~~~----------------------------------------~~~~~If~---G~LL~~~~~-~~i~~yDw~~  135 (443)
T PF04053_consen  100 EVVKSIKLP----------------------------------------FSVEKIFG---GNLLGVKSS-DFICFYDWET  135 (443)
T ss_dssp             -TT-----S----------------------------------------S-EEEEE----SSSEEEEET-TEEEEE-TTT
T ss_pred             ccceEEcCC----------------------------------------cccceEEc---CcEEEEECC-CCEEEEEhhH
Confidence            222222211                                        12333332   777777764 4899999999


Q ss_pred             CcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-----------eeEEEecccCcCEEEEEEcCCCCEEE
Q psy11350        312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-----------RCIMFLEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       312 ~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-----------~~~~~~~~h~~~v~~~~~sp~~~~l~  380 (471)
                      ++.+..+...  +|..+.|+++|.+++..+.+ .+.|++....           .....+..-...|.+.+|..+  .++
T Consensus       136 ~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fi  210 (443)
T PF04053_consen  136 GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFI  210 (443)
T ss_dssp             --EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEE
T ss_pred             cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEE
Confidence            9999888743  48999999999999988755 5777764332           123333322467888999765  444


Q ss_pred             EEeCCCcEEE
Q psy11350        381 TGSEDNAVKI  390 (471)
Q Consensus       381 s~s~dg~i~i  390 (471)
                      -.+.. .|+.
T Consensus       211 YtT~~-~lkY  219 (443)
T PF04053_consen  211 YTTSN-HLKY  219 (443)
T ss_dssp             EE-TT-EEEE
T ss_pred             EEcCC-eEEE
Confidence            33333 6666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.04  E-value=0.0013  Score=60.36  Aligned_cols=196  Identities=14%  Similarity=0.143  Sum_probs=118.4

Q ss_pred             EEEecCCCEEEEEe--CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC-CCcce
Q psy11350        158 CSFSPDSQHVATAS--WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD-KDTPL  234 (471)
Q Consensus       158 ~~~s~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~  234 (471)
                      +++|.||++++...  -...|.|.|+...+.+..+....    |....|.++.    -+.+-|.||++.-..+. .|+..
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~----~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNR----GFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETT----EEEEEETTSCEEEEEETSTSSEE
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCC----ceEEEecCCceEEEEECCCCCEe
Confidence            47789999887654  45689999999999988876432    3334455443    58899999999999887 44433


Q ss_pred             ee----ecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-------------ccccc---cccCCCCcceEEEEECCCCCE
Q psy11350        235 AN----LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-------------DTPLA---NLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       235 ~~----~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-------------~~~~~---~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      .+    |....+..+..-++...+..++..+..|.+..             +....   .-.+-.++.-.-+++++..+.
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            21    22222222334445555555555555555322             11000   001111233456888876665


Q ss_pred             EEEEec---CC-------eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC-EEEEE-eCCCeEEEEeCCCCeeEEEecc
Q psy11350        295 LGTCCW---DH-------SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS-VVATG-GLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       295 l~~~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~-~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      |++--.   ++       .|.++|+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.+.++..
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            554322   11       489999999999988864 34677999999766 55444 4579999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.03  E-value=0.0055  Score=56.41  Aligned_cols=223  Identities=17%  Similarity=0.114  Sum_probs=124.8

Q ss_pred             cCCCEEEEEeCCCcEEEEeCC-CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee---
Q psy11350        162 PDSQHVATASWSGLCKLWTVP-ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL---  237 (471)
Q Consensus       162 ~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---  237 (471)
                      ..++.|+.|+.+| |+++++. .........  ...|..+...|.-+     .++.- .|+.+.++++..-......   
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-----~llvL-sd~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-----LLLVL-SDGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-----EEEEE-cCCccEEEEchhhccccccccc
Confidence            4578999999888 9999983 333333332  33499999999776     34443 4599999998755433311   


Q ss_pred             ----------cCCCCcceEEEE--ECCCCCEEEEEeCCCeEEecccc--------ccccCCCCcceEEEEECCCCCEEEE
Q psy11350        238 ----------EGHEPFRVSRIK--FHPSGRFLGTCCWDHSWRLDTPL--------ANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       238 ----------~~~~~~~v~~~~--~s~~~~~i~~~~~d~~~~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                                .......+..++  -...+...++......+.+....        ....-..+..+..++|.  ++.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICV  153 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEE
Confidence                      111111344444  22333333334333343331111        11111224568889998  567877


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCC------------CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE--Eeccc
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGH------------GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM--FLEGH  363 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~h  363 (471)
                      |..+ ...+.|+.++.....+...            ..++..+... ++.+|++.  +..-...|. .|++..  .+.- 
T Consensus       154 ~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-  227 (275)
T PF00780_consen  154 GTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-  227 (275)
T ss_pred             EeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-
Confidence            7744 4889999877554333211            1234344443 45666653  333334443 443332  2221 


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      ...+.++++.  ..||+..+. +.|.||++.++++++++..
T Consensus       228 ~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  228 SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            2355666663  457777665 4599999999999987763

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1920|consensus

Probab=98.01  E-value=0.0023  Score=66.91  Aligned_cols=188  Identities=14%  Similarity=0.111  Sum_probs=107.3

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA  273 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~  273 (471)
                      ...|.++.|..+..     .++.+..+|.|.+-|..+....  +-+.-...|.+++|+||+..++..+..+++.+.+...
T Consensus        68 d~~i~s~~fl~d~~-----~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTN-----SICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CcceEEEEEecccc-----eEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence            46799999998887     5888888999999987665432  2333344899999999999999998888755533211


Q ss_pred             cccCC--------CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-EEeeCCCCCeEEEEEeCCCCEEEEEe---
Q psy11350        274 NLEGH--------EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV-LHQEGHGKPVYCMSFQGDGSVVATGG---  341 (471)
Q Consensus       274 ~~~~~--------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~t~~---  341 (471)
                      .....        .....-.+-|-.....| -|+ .|.....+....... ....-+ ..=+++.|--||.++++..   
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~  217 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVES  217 (1265)
T ss_pred             cchhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEec
Confidence            11110        00111222222211111 011 111111111111000 001112 2234689999999999843   


Q ss_pred             -CC-CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe---CCCcEEEEE
Q psy11350        342 -LD-AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS---EDNAVKIWD  392 (471)
Q Consensus       342 -~d-g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s---~dg~i~iwd  392 (471)
                       .+ ..|+|||.. |..-.+-....+-=.+++|-|.|..+++-.   +|+.|.++.
T Consensus       218 ~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  218 ETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             cCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence             23 789999966 433222222334456789999999988763   455677776

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0065  Score=58.68  Aligned_cols=202  Identities=14%  Similarity=0.126  Sum_probs=129.9

Q ss_pred             CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        154 PISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ....+...|++..+.... ....+.+-+.. ...... .......-..++.++.+..    .++....++.|.+.|..+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~----vyv~~~~~~~v~vid~~~~  106 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNK----VYVTTGDSNTVSVIDTATN  106 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCe----EEEecCCCCeEEEEcCccc
Confidence            344557788885544333 33345555544 222222 1111123346777777764    4555666788999996655


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec---CCeEEEEE
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW---DHSWRLWD  308 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd  308 (471)
                      ..........                                        ....++++|+++.++++..   ++++.+.|
T Consensus       107 ~~~~~~~vG~----------------------------------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391         107 TVLGSIPVGL----------------------------------------GPVGLAVDPDGKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             ceeeEeeecc----------------------------------------CCceEEECCCCCEEEEEecccCCceEEEEe
Confidence            5444333211                                        3567889999887777765   68999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEE-E---ecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIM-F---LEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~-~---~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      ..+.+.......-..+ ..++++|+|..++... .++.|.+.|........ .   ...-......+.++|+|.+++...
T Consensus       147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~  225 (381)
T COG3391         147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAN  225 (381)
T ss_pred             CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEe
Confidence            9998888775443445 8999999999666554 78899999976655442 1   111223457789999999766554


Q ss_pred             CC---CcEEEEECCCccchhe
Q psy11350        384 ED---NAVKIWDLRKRRLLKW  401 (471)
Q Consensus       384 ~d---g~i~iwd~~~~~~~~~  401 (471)
                      ..   +.+...|..++....+
T Consensus       226 ~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         226 DGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             ccCCCceEEEEeCCCceEEEe
Confidence            33   5899999998877665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.0064  Score=58.72  Aligned_cols=207  Identities=14%  Similarity=0.039  Sum_probs=141.3

Q ss_pred             eEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe--CCCcEEEEeCCCC
Q psy11350        155 ISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA--QDGSVKLWSLDKD  231 (471)
Q Consensus       155 V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~  231 (471)
                      -..+++++.+..++ +...++.|.+.|..+.+.......-. ....+++.|++..    +.++-.  .++++.+.|..++
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~----vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKY----VYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCE----EEEEecccCCceEEEEeCCCC
Confidence            34667888888554 44456899999988777776655332 4568999999873    333333  3688888888777


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECC
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLN  310 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~  310 (471)
                      ..........                                       .+ ..+++.|+|+.+++.. .++.|.++|..
T Consensus       151 ~~~~~~~vG~---------------------------------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         151 KVTATIPVGN---------------------------------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             eEEEEEecCC---------------------------------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            6665533221                                       12 6788999998666655 68899999977


Q ss_pred             CCcEEE-E---eeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecccCc-CEEEEEEcCCCCEEEEE
Q psy11350        311 QGQEVL-H---QEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEGHLK-SVFSVDFSPDGYHLATG  382 (471)
Q Consensus       311 ~~~~~~-~---~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~  382 (471)
                      ...... .   ...-...-..+.++|+|..+.+....   +.+.+.|..++.....-..-.. ....+..+|+|..+.+.
T Consensus       191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence            655442 1   01112233578899999976665443   5899999988876654221112 56778999999998887


Q ss_pred             eC-CCcEEEEECCCccchheecccC
Q psy11350        383 SE-DNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       383 s~-dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                      .. .+.+.+.|..+.+....+....
T Consensus       271 ~~~~~~V~vid~~~~~v~~~~~~~~  295 (381)
T COG3391         271 NSQGGTVSVIDGATDRVVKTGPTGN  295 (381)
T ss_pred             ecCCCeEEEEeCCCCceeeeecccc
Confidence            44 4889999999988877665443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.98  E-value=0.00043  Score=67.12  Aligned_cols=195  Identities=16%  Similarity=0.048  Sum_probs=115.6

Q ss_pred             CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEe-
Q psy11350        184 CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-  261 (471)
Q Consensus       184 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~-  261 (471)
                      +.....+......+..-.|+|++....+  +..-... ..+.++++.+++.........  .-...+|+|||+.++.+. 
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y--~~f~~~~~~~i~~~~l~~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAY--VSFELGGCPRIYYLDLNTGKRPVILNFNG--NNGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEE--EEEecCCCceEEEEeccCCccceeeccCC--ccCCccCCCCCCEEEEEEC
Confidence            4444455545566778899999885322  1111222 469999998887655544211  344678999999887665 


Q ss_pred             CCCeEEec-----cc-cccccCCCCcceEEEEECCCCCEEEEEecC-C--eEEEEECCCCcEEEEeeCCCCCeEEEEEeC
Q psy11350        262 WDHSWRLD-----TP-LANLEGHEPFRVSRIKFHPSGRFLGTCCWD-H--SWRLWDLNQGQEVLHQEGHGKPVYCMSFQG  332 (471)
Q Consensus       262 ~d~~~~~~-----~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  332 (471)
                      .++...++     .. ...+... .+.-+.=.|+|+|++++..+.. |  .|.++|++.... ..+......-..-.|+|
T Consensus       258 rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp  335 (425)
T COG0823         258 RDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP  335 (425)
T ss_pred             CCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC
Confidence            44553331     11 1111111 2223356799999988877643 3  477788876655 33333333333778999


Q ss_pred             CCCEEEEEeCC-Ce--EEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        333 DGSVVATGGLD-AF--GRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       333 d~~~l~t~~~d-g~--i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                      ||++|+..+.. |.  |.+.|+.++..+..+. +......-.|.|+|..+...+..
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            99998877643 43  6677776665433332 33444556788888877655443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.95  E-value=0.012  Score=59.26  Aligned_cols=254  Identities=11%  Similarity=0.021  Sum_probs=140.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCC----CEEEEEEeeCCCCCCccEEEEEe------CCCcEEEEeCCCCcc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDC----NVGAIEFHPLPSEGAVCSLASCA------QDGSVKLWSLDKDTP  233 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~  233 (471)
                      +..++.++.++.|.-.|..+|+.+........    .+++--..-++      .++.+.      .+|.|..+|.++|+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g------~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG------KVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC------EEEEeecccccCCCcEEEEEECCCCce
Confidence            35677788899999999999999876642110    11110001122      344443      268899999999987


Q ss_pred             eeeecCCCC------------------------------cce-EEEEECCCCCEEEEEeCC-----Ce------------
Q psy11350        234 LANLEGHEP------------------------------FRV-SRIKFHPSGRFLGTCCWD-----HS------------  265 (471)
Q Consensus       234 ~~~~~~~~~------------------------------~~v-~~~~~s~~~~~i~~~~~d-----~~------------  265 (471)
                      +..+..-..                              ..+ ..+++.|...+++.+...     +.            
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~  273 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI  273 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence            766443211                              011 234666766666665532     11            


Q ss_pred             E--Eeccccc----cccCC------CCcceEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEE--------e----
Q psy11350        266 W--RLDTPLA----NLEGH------EPFRVSRIKFHPSGR---FLGTCCWDHSWRLWDLNQGQEVLH--------Q----  318 (471)
Q Consensus       266 ~--~~~~~~~----~~~~~------~~~~v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~--------~----  318 (471)
                      +  ++.+...    ....|      ......-+.+..+|+   .++.++.+|.+.+.|..+++++..        .    
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~  353 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV  353 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence            1  1111000    00011      001122233334665   778999999999999999987621        1    


Q ss_pred             eCCC-CCe----------------------------EEEEEeCCCCEEEEEeCC--------------------------
Q psy11350        319 EGHG-KPV----------------------------YCMSFQGDGSVVATGGLD--------------------------  343 (471)
Q Consensus       319 ~~~~-~~v----------------------------~~~~~s~d~~~l~t~~~d--------------------------  343 (471)
                      .... .++                            ..++++|+..+++....+                          
T Consensus       354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  433 (527)
T TIGR03075       354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK  433 (527)
T ss_pred             CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence            0000 000                            125666665555543322                          


Q ss_pred             -------CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeecc
Q psy11350        344 -------AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLL  416 (471)
Q Consensus       344 -------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  416 (471)
                             |.|.-+|+.+++..-..........+. +.-.+.+++.++.+|.++.+|.++|+.+..+..........++..
T Consensus       434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~  512 (527)
T TIGR03075       434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYE  512 (527)
T ss_pred             CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEE
Confidence                   457777888887766554221111111 112455777888899999999999999987765443333444433


Q ss_pred             ccceeeee
Q psy11350        417 TDLYIDVL  424 (471)
Q Consensus       417 ~d~~~~~~  424 (471)
                      .+.++.+.
T Consensus       513 ~~G~qYv~  520 (527)
T TIGR03075       513 QDGKQYVA  520 (527)
T ss_pred             eCCEEEEE
Confidence            45555443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.94  E-value=0.0032  Score=56.17  Aligned_cols=193  Identities=14%  Similarity=0.117  Sum_probs=106.4

Q ss_pred             ecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEeecC-CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        149 VGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .|-...++.++|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.     ++++.-.++.+.+.
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-----~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-----YVLSEERDQRLYIF   91 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-----EEEEETTTTEEEEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-----EEEEEcCCCcEEEE
Confidence            35555699999999866 5556667788888886 57888877633 35678899987775     55555568999999


Q ss_pred             eCCCCc------ceeeec----CCCCcceEEEEECCCCCEEEEEeCCCeEEe---cc---ccc-------cc--cCCCCc
Q psy11350        227 SLDKDT------PLANLE----GHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---DT---PLA-------NL--EGHEPF  281 (471)
Q Consensus       227 d~~~~~------~~~~~~----~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---~~---~~~-------~~--~~~~~~  281 (471)
                      ++....      ....+.    ......+..++|.|.++.++++-......+   ..   ...       .+  ......
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            884321      111121    123346899999999887777755433221   11   000       00  111123


Q ss_pred             ceEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeCCC---------CCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy11350        282 RVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGHG---------KPVYCMSFQGDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       282 ~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~d~~~l~t~~~dg~i~iw  349 (471)
                      .+.+++++|.. .+++.+..+..|..+| .+|+.+..+.-..         ...-.|+|.++|++.+++ .-+..+++
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            57899999954 5666677788899999 5677665543221         346789999999766655 45555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.91  E-value=0.00052  Score=70.50  Aligned_cols=148  Identities=13%  Similarity=0.077  Sum_probs=96.4

Q ss_pred             CEEEEE-eCCCcEEEEeCCCCceEEEeecCCCC-EEEEEEeeCCCC--CCccEEEEEeCCCcEEEEeCCCCc-ceeeecC
Q psy11350        165 QHVATA-SWSGLCKLWTVPECELVQTFRGHDCN-VGAIEFHPLPSE--GAVCSLASCAQDGSVKLWSLDKDT-PLANLEG  239 (471)
Q Consensus       165 ~~l~tg-~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~  239 (471)
                      ++|+.- .....|+-.|++.|+.+..+..|... |..  +.|+...  ....-.+.|-.+..+..||.+-.. .+..-..
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            344432 34678999999999999999987644 444  4443220  001135677788999999987432 1100000


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE  319 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  319 (471)
                                                       ..+.  .....+|++-+.+| +||+|+.+|.||+||--..+....+.
T Consensus       572 ---------------------------------k~Y~--~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp  615 (794)
T PF08553_consen  572 ---------------------------------KQYS--SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP  615 (794)
T ss_pred             ---------------------------------cccc--cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC
Confidence                                             0011  12346777776655 79999999999999943323333456


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       320 ~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      +-+.||.+|+.+.||++|++.+ +..+.+++.
T Consensus       616 ~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  616 GLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            7789999999999999987765 566777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.00068  Score=65.74  Aligned_cols=182  Identities=18%  Similarity=0.117  Sum_probs=112.0

Q ss_pred             CcCeEEEEEecCCCEEEEEe---CC-CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE-
Q psy11350        152 TRPISYCSFSPDSQHVATAS---WS-GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW-  226 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~---~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw-  226 (471)
                      ...+..-+|+|++..++..+   .. ..++++++.+++....+. ..+.-....|+|++..    ++++...||...|| 
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~----l~f~~~rdg~~~iy~  266 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK----LAFSSSRDGSPDIYL  266 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE----EEEEECCCCCccEEE
Confidence            44566778999998876542   22 469999999887655544 2334457799999985    67777788876655 


Q ss_pred             -eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe----EEec---cccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        227 -SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----WRLD---TPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       227 -d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~----~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                       |+.+++ ...+..... .-..-.|+|||+.|+..+..+.    +...   .....+..... .-..-.|+|+|++|+..
T Consensus       267 ~dl~~~~-~~~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         267 MDLDGKN-LPRLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-GNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             EcCCCCc-ceecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-CCcCccCCCCCCEEEEE
Confidence             665555 333333333 3337789999999988876543    2221   11122222211 12266789999998887


Q ss_pred             ecC-Ce--EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy11350        299 CWD-HS--WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL  342 (471)
Q Consensus       299 ~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~  342 (471)
                      +.. |.  |.+.|+.++...+.+. +......-.|.+++..++..+.
T Consensus       344 ~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         344 SSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             eccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            753 43  6677776665433332 3333445677788877665543

>KOG4640|consensus

Probab=97.89  E-value=7.9e-05  Score=72.09  Aligned_cols=94  Identities=19%  Similarity=0.246  Sum_probs=80.7

Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVY-CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM  358 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~  358 (471)
                      +..+..+.|+|.-..+|++..+|.|.+.-+. .+.+.++.-|+.+++ +++|.|||++|++|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3358899999999999999999999999987 778888887888888 99999999999999999999999999998776


Q ss_pred             Eec-ccCcCEEEEEEcC
Q psy11350        359 FLE-GHLKSVFSVDFSP  374 (471)
Q Consensus       359 ~~~-~h~~~v~~~~~sp  374 (471)
                      ... .-...|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            621 2446788888863

>KOG3617|consensus

Probab=97.88  E-value=9.3e-05  Score=73.79  Aligned_cols=107  Identities=16%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             EEEEECCCCCEEEEEeCC----CeEEeccccccccCC--CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Q psy11350        246 SRIKFHPSGRFLGTCCWD----HSWRLDTPLANLEGH--EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE  319 (471)
Q Consensus       246 ~~~~~s~~~~~i~~~~~d----~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  319 (471)
                      +-..|+|...++++++..    |.+.+.........+  .+..+++++|+|..-.|+.|-.-|.+.+|...+.+.-....
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            445788888888877643    445553222222222  23447789999998899999999999999988876666667


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy11350        320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       320 ~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~  352 (471)
                      .|..+|..+.||++|..++++..-|.|.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            899999999999999999999999999999765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=0.0046  Score=59.21  Aligned_cols=224  Identities=20%  Similarity=0.179  Sum_probs=120.1

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cC----------------CCCEEEEEEeeCCCCCCccEE
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GH----------------DCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h----------------~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      ...+....|||+|+.+|... ++.|++++..++...+.-. +-                -+.-.++-|+|++..     |
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~-----l  115 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY-----L  115 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE-----E
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCE-----E
Confidence            45678889999999999887 7899999988775443221 20                112246889999883     4


Q ss_pred             EEEeCC-C-----------------------------------cEEEEeCCCCcceee-ec---CCCCcceEEEEECCCC
Q psy11350        215 ASCAQD-G-----------------------------------SVKLWSLDKDTPLAN-LE---GHEPFRVSRIKFHPSG  254 (471)
Q Consensus       215 ~s~~~d-g-----------------------------------~i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~s~~~  254 (471)
                      +....| .                                   .+.|+|+.+++.... ..   ......+..+.|.+++
T Consensus       116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~  195 (353)
T PF00930_consen  116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG  195 (353)
T ss_dssp             EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT
T ss_pred             EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC
Confidence            333221 1                                   244566665554321 11   1234468899999999


Q ss_pred             CEEEEEeCC--Ce-EEe-----ccccc--cccCCCCc---ceEEEEEC-CCCC-EEEEEecCCe--EEEEECCCCcEEEE
Q psy11350        255 RFLGTCCWD--HS-WRL-----DTPLA--NLEGHEPF---RVSRIKFH-PSGR-FLGTCCWDHS--WRLWDLNQGQEVLH  317 (471)
Q Consensus       255 ~~i~~~~~d--~~-~~~-----~~~~~--~~~~~~~~---~v~~l~~~-~~~~-~l~~~~~dg~--i~iwd~~~~~~~~~  317 (471)
                      ..+++.-.+  .. ..+     .....  ........   ......|. +++. +|.....+|.  |.+++...+. ...
T Consensus       196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~  274 (353)
T PF00930_consen  196 KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQ  274 (353)
T ss_dssp             EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEE
T ss_pred             cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eec
Confidence            844433322  11 111     11000  00111111   12244554 5555 5555556665  6666766655 345


Q ss_pred             eeCCCCCeEE-EEEeCCCCEEE-EEeCC----CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE
Q psy11350        318 QEGHGKPVYC-MSFQGDGSVVA-TGGLD----AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       318 ~~~~~~~v~~-~~~s~d~~~l~-t~~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      +....-.|.. +.++++++.|+ ++..+    ..|+.-++..+..+..+....+.-..+.|||++++++-.
T Consensus       275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            5555566754 67788766544 55442    356666777233444555433333799999999987644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.85  E-value=0.005  Score=61.62  Aligned_cols=199  Identities=9%  Similarity=0.086  Sum_probs=119.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCC------CEE--EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDC------NVG--AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      +..++.++.++.|+-.|..+|+.+..+.....      .+.  .+... ++.     .++.++.+|.|..+|.++|+.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~-----~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR-----KVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC-----eEEEecCCCeEEEEECCCCCEee
Confidence            45677777899999999999998877654322      000  01111 112     57788889999999999999887


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE---------ecCCeEEE
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC---------CWDHSWRL  306 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~---------~~dg~i~i  306 (471)
                      .+....... ....                         +.   .    ...+.  +..++.+         ..+|.+..
T Consensus       135 ~~~~~~~~~-~~~~-------------------------i~---s----sP~v~--~~~v~vg~~~~~~~~~~~~g~v~a  179 (488)
T cd00216         135 KFGNNDQVP-PGYT-------------------------MT---G----APTIV--KKLVIIGSSGAEFFACGVRGALRA  179 (488)
T ss_pred             eecCCCCcC-cceE-------------------------ec---C----CCEEE--CCEEEEeccccccccCCCCcEEEE
Confidence            776433200 0000                         00   0    00000  1223333         34678889


Q ss_pred             EECCCCcEEEEeeCCCC--------------------Ce-EEEEEeCCCCEEEEEeCCC------------------eEE
Q psy11350        307 WDLNQGQEVLHQEGHGK--------------------PV-YCMSFQGDGSVVATGGLDA------------------FGR  347 (471)
Q Consensus       307 wd~~~~~~~~~~~~~~~--------------------~v-~~~~~s~d~~~l~t~~~dg------------------~i~  347 (471)
                      +|..+++.+..+.....                    .+ ...++.+.+..++.++.++                  .|.
T Consensus       180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~  259 (488)
T cd00216         180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV  259 (488)
T ss_pred             EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence            99999887766543211                    01 1244555566777777665                  799


Q ss_pred             EEeCCCCeeEEEecccCcCEE------EEEEc----CCCC---EEEEEeCCCcEEEEECCCccchheec
Q psy11350        348 VWDLRTGRCIMFLEGHLKSVF------SVDFS----PDGY---HLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       348 iwd~~~~~~~~~~~~h~~~v~------~~~~s----p~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      -+|..+|+.+-.++.-.....      ...+.    -+|.   .++.++.+|.+...|.++|+.+....
T Consensus       260 Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         260 ALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            999999998876542111110      01111    1333   67888899999999999999886543

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.011  Score=54.82  Aligned_cols=231  Identities=15%  Similarity=0.055  Sum_probs=127.1

Q ss_pred             EEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee
Q psy11350        159 SFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL  237 (471)
Q Consensus       159 ~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  237 (471)
                      .|.++...|+ +--..+.|.-|+..+++.. .+.. .+.+.++.....+.     .|+++.  .-+.+++.+++..+..+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g-----~Lv~~~--~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGG-----RLIACE--HGVRLLDPDTGGKITLL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCC-----eEEEEc--cccEEEeccCCceeEEe
Confidence            4677777544 4456788999998766433 2222 23344544444443     355543  33566776555442222


Q ss_pred             c----CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc
Q psy11350        238 E----GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ  313 (471)
Q Consensus       238 ~----~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  313 (471)
                      .    .......+.....|+|.+.+.....  +   .     .            ...     ..-.-|.|+.+|. .+.
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~--~---~-----~------------~~~-----~~~~~G~lyr~~p-~g~  153 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGY--F---D-----L------------GKS-----EERPTGSLYRVDP-DGG  153 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCc--c---c-----c------------Ccc-----ccCCcceEEEEcC-CCC
Confidence            1    1111234444555554443331110  0   0     0            000     0001134555554 455


Q ss_pred             EEEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCC--C----e-eEEEecccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        314 EVLHQEGHGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRT--G----R-CIMFLEGHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       314 ~~~~~~~~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~--~----~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                      .+..+..+-..-+.|+||||++.|+.+.. .+.|+-|++..  +    + ....+....+..-.++...+|.+.+++..+
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            55555555556678999999987777755 47788887752  1    1 112222345667788888888888655555


Q ss_pred             C-cEEEEECCCccchheecccCCCccceeeccccceeeeeccc
Q psy11350        386 N-AVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESL  427 (471)
Q Consensus       386 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  427 (471)
                      | .|.+|+.+ ++++..+..+.+....+.-...+....+..+.
T Consensus       234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            4 89999988 99998887776555555444444444444333

>KOG3621|consensus

Probab=97.81  E-value=0.00013  Score=71.52  Aligned_cols=116  Identities=20%  Similarity=0.196  Sum_probs=89.9

Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE-
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI-  357 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~-  357 (471)
                      +..|.--+++..+.+++.|+.-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.++-+..+.+. 
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            44566666777889999999999999999877654322 2234455667788888899999999999999987764221 


Q ss_pred             --E--Ee-cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        358 --M--FL-EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       358 --~--~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                        .  .. ..|...|++++|++|+..+++|...|+|..-.+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              1  11 13678899999999999999999999999888877

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.80  E-value=0.038  Score=53.13  Aligned_cols=82  Identities=9%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE-EE-cCC----------------CC-EEEEEe
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV-DF-SPD----------------GY-HLATGS  383 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~-~~-sp~----------------~~-~l~s~s  383 (471)
                      ..+.+++.+|++++.++...=|+|.++|+.++..+..++|..+.=..- .. .+.                .. +++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            447789999999999998888999999999998887777654321111 00 000                11 234456


Q ss_pred             CCCcEEEEECCCccchheecc
Q psy11350        384 EDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      .-|.|.||.+++|..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            789999999999998876654

>KOG4640|consensus

Probab=97.80  E-value=0.00013  Score=70.71  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=79.6

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEE-EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVG-AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ..|.-+.|+|.-.++|++..+|.|.++.+. .+.+.++.-|..+++ +++|.|+|+     +|+.|-.||+|++.|+.++
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-----llaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-----LLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-----EEEEEecCCeEEEEEccCC
Confidence            367788999999999999999999999987 778888887788888 999999998     8999999999999999999


Q ss_pred             cceeeecCCCCcceEEEEEC
Q psy11350        232 TPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s  251 (471)
                      ..+..+.......|.++.|.
T Consensus        95 ~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   95 GRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             Cceeccccccccchheeecc
Confidence            88887554444467777765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.76  E-value=0.00051  Score=66.86  Aligned_cols=142  Identities=18%  Similarity=0.157  Sum_probs=80.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCC
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK  323 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  323 (471)
                      ....+.++|+|+++++ +.+|.+.+.+....-... .+.-...+|.+. +.+|+-...++|.|+.--+......+.. ..
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~  109 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKL-PF  109 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT------SS
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-cCceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcC-Cc
Confidence            5789999999999999 555665554422111111 234567889984 4577777788999963222222222221 11


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      .+..+-.   |.+|+..+.+ .|.+||+.+++.+..+...  +|..+.|+++|.+++..+.+ .+.|++.+..
T Consensus       110 ~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  110 SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             -EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            2333332   7777777654 8999999999999998743  48999999999999988755 7778776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00011  Score=44.01  Aligned_cols=39  Identities=49%  Similarity=0.836  Sum_probs=34.6

Q ss_pred             CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       354 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      ++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.68  E-value=0.012  Score=57.41  Aligned_cols=225  Identities=13%  Similarity=0.098  Sum_probs=113.7

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-------eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT-------FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      +.|.++.|+.+..++ .-..||.+++||+. |+....       .......+.+..+...|       ++.-..++.+.+
T Consensus        81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G-------ivvLt~~~~~~~  151 (410)
T PF04841_consen   81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG-------IVVLTGNNRFYV  151 (410)
T ss_pred             CCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC-------EEEECCCCeEEE
Confidence            799999998865544 55569999999986 333111       11112222222332233       333334455444


Q ss_pred             EeCCCCc-ceeee---cCC-----CCcceEE-EEECCCCCEEEEEeCCCeEE-ecccc-ccccCCCCcceEEEEECCCCC
Q psy11350        226 WSLDKDT-PLANL---EGH-----EPFRVSR-IKFHPSGRFLGTCCWDHSWR-LDTPL-ANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       226 wd~~~~~-~~~~~---~~~-----~~~~v~~-~~~s~~~~~i~~~~~d~~~~-~~~~~-~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      .+--... ....+   ...     ....... ..++.+....+....++.+. +.... ..+..  .+++..|++||+++
T Consensus       152 v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~--~~~i~~iavSpng~  229 (410)
T PF04841_consen  152 VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDS--DGPIIKIAVSPNGK  229 (410)
T ss_pred             EeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccC--CCCeEEEEECCCCC
Confidence            4321111 11111   110     0001111 23455555555555554433 22211 11111  34799999999999


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeeCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      ++|.-..+|.+.+.+..-.+.+..+... ......+.|.-+...++.-  ...|.+..           .....   +.|
T Consensus       230 ~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg-----------~~~~~---~~~  293 (410)
T PF04841_consen  230 FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG-----------PDGDS---ISF  293 (410)
T ss_pred             EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC-----------CCCCc---eEE
Confidence            9999999999999987666655555433 3345566666543322222  22333333           11112   233


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .-++..++..-.|| +||..-.+...++.++..
T Consensus       294 ~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~  325 (410)
T PF04841_consen  294 WYDGPVILVSEIDG-VRIITSTSHEFLQRVPDS  325 (410)
T ss_pred             eccCceEEeccCCc-eEEEeCCceEEEEECCHH
Confidence            33334444444555 788877666666655433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.67  E-value=0.0045  Score=58.46  Aligned_cols=183  Identities=11%  Similarity=0.118  Sum_probs=106.1

Q ss_pred             CcEEEEeCCCCceEEEeec-CCCCEEEEEEeeCCCC--CCccEEEEEeC----------CCcEEEEeCCCC-cceeeecC
Q psy11350        174 GLCKLWTVPECELVQTFRG-HDCNVGAIEFHPLPSE--GAVCSLASCAQ----------DGSVKLWSLDKD-TPLANLEG  239 (471)
Q Consensus       174 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~--~~~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~  239 (471)
                      +.|++.|..+.+.+..+.- ....+.+++...-...  ....+++.|+.          .|.|.++++... .....+. 
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~-   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK-   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE-
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE-
Confidence            4688899888887776653 2344555554442211  11226666653          278888888664 1000000 


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEe
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ-EVLHQ  318 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  318 (471)
                          .+.                             ....+++|++++-- ++ +|+++. ++.|.+|++...+ ....-
T Consensus        81 ----~i~-----------------------------~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~  124 (321)
T PF03178_consen   81 ----LIH-----------------------------STEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKA  124 (321)
T ss_dssp             ----EEE-----------------------------EEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEE
T ss_pred             ----EEE-----------------------------EEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhh
Confidence                000                             00013467777766 33 454444 5889999998877 33322


Q ss_pred             -eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CeeEEEec--ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        319 -EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-GRCIMFLE--GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       319 -~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                       ......+.++...  +.++++|.....+.++..+. ...+..+.  .....++++.|.+++..++.+..+|.|.++...
T Consensus       125 ~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  125 FYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             eecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence             2233456666654  56999999888888875443 33233332  234568899998776799999999999999886


Q ss_pred             C
Q psy11350        395 K  395 (471)
Q Consensus       395 ~  395 (471)
                      .
T Consensus       203 ~  203 (321)
T PF03178_consen  203 P  203 (321)
T ss_dssp             S
T ss_pred             C
Confidence            3

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.61  E-value=0.059  Score=50.74  Aligned_cols=219  Identities=19%  Similarity=0.162  Sum_probs=99.9

Q ss_pred             EEecCCCEEEEEeC-C--CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        159 SFSPDSQHVATASW-S--GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       159 ~~s~~~~~l~tg~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      +|.+||+.|+.++. +  ..+++.|+.+++..+.-.+.........++|.+.     .++-......|.-.|+.+.+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-----~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-----ALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS-----EEEEEETTTEEEEEETTT--EEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC-----eEEEEECCCeEEEEECCcCcEEE
Confidence            67899987766554 4  4678888888877665443222233466677766     45445455788888998887655


Q ss_pred             eecCCCCcceEEEEE--CCCCCEEEEEeCCCe-EE------------------------eccccccccCCCCcceEEEEE
Q psy11350        236 NLEGHEPFRVSRIKF--HPSGRFLGTCCWDHS-WR------------------------LDTPLANLEGHEPFRVSRIKF  288 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~--s~~~~~i~~~~~d~~-~~------------------------~~~~~~~~~~~~~~~v~~l~~  288 (471)
                      .+..... -+-...|  +.++..++..-.... +.                        +.+............+..+.|
T Consensus       117 vy~~p~~-~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~f  195 (386)
T PF14583_consen  117 VYEVPDD-WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQF  195 (386)
T ss_dssp             EEE--TT-EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEE
T ss_pred             EEECCcc-cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCccc
Confidence            5555554 3333444  445655544321111 10                        011111111112335678899


Q ss_pred             CCCCCEEEEEecCC-----eEEEEECCC-CcEEEEeeCCC--CCeEEEEEeCCCCEEEEEe-----CCCeEEEEeCCCCe
Q psy11350        289 HPSGRFLGTCCWDH-----SWRLWDLNQ-GQEVLHQEGHG--KPVYCMSFQGDGSVVATGG-----LDAFGRVWDLRTGR  355 (471)
Q Consensus       289 ~~~~~~l~~~~~dg-----~i~iwd~~~-~~~~~~~~~~~--~~v~~~~~s~d~~~l~t~~-----~dg~i~iwd~~~~~  355 (471)
                      +|....+++=+..|     .-+||-+++ +.....+..+.  ..+..=-|.|||..|.--+     .+..|.-+|+.+++
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            99655544443333     125554433 22233333332  3344556899998665422     34467778888876


Q ss_pred             eEEEecccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        356 CIMFLEGHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                      .....  .......+--++||++++-=+.|
T Consensus       276 ~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  276 RRRLM--EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             ceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence            54322  22245566777899887654444

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.60  E-value=0.013  Score=56.41  Aligned_cols=264  Identities=16%  Similarity=0.134  Sum_probs=125.7

Q ss_pred             CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee--eecCCCCcceEEEEECC---CCCEEEEEe-CCCeEEe-
Q psy11350        196 NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA--NLEGHEPFRVSRIKFHP---SGRFLGTCC-WDHSWRL-  268 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~s~---~~~~i~~~~-~d~~~~~-  268 (471)
                      .|+.+.|.+...     -|+.|...|.|.||....++...  ......+  .....+..   .+..+-... .+..++- 
T Consensus         3 ~v~~vs~a~~t~-----Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~di~~r~~~~~~~g   75 (395)
T PF08596_consen    3 SVTHVSFAPETL-----ELAVGLESGEVVLFKFGKNQNYGNREQPPDLD--YNFRRFSLNNSPGKLTDISDRAPPSLKEG   75 (395)
T ss_dssp             -EEEEEEETTTT-----EEEEEETTS-EEEEEEEE--------------------S--GGGSS-SEEE-GGG--TT-SEE
T ss_pred             eEEEEEecCCCc-----eEEEEccCCcEEEEEcccCCCCCccCCCcccC--cccccccccCCCcceEEehhhCCcccccc
Confidence            588999999877     49999999999999875543322  0000000  00000000   000000000 0000000 


Q ss_pred             ccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eC------CCCCeEEEEEeC-----CC-
Q psy11350        269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EG------HGKPVYCMSFQG-----DG-  334 (471)
Q Consensus       269 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~------~~~~v~~~~~s~-----d~-  334 (471)
                      ..+...+... .++|++++.+ +=.++|+|..+|.+.|.|++....+..-  ..      ....++++.|+-     |+ 
T Consensus        76 f~P~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   76 FLPLTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             cCchhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            0122223333 5689999997 5569999999999999999887766552  11      234688888863     33 


Q ss_pred             --CEEEEEeCCCeEEEEeCC--C-Ce----eEEEecccCcCEEEEE-EcCC-----------------C---CEEEEEeC
Q psy11350        335 --SVVATGGLDAFGRVWDLR--T-GR----CIMFLEGHLKSVFSVD-FSPD-----------------G---YHLATGSE  384 (471)
Q Consensus       335 --~~l~t~~~dg~i~iwd~~--~-~~----~~~~~~~h~~~v~~~~-~sp~-----------------~---~~l~s~s~  384 (471)
                        -++++|...|.+.+|.+.  . +.    .......+.++|..+. ++.+                 |   ..++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              378899999999999764  1 21    1112224556666554 3211                 0   12333345


Q ss_pred             CCcEEEEECCCccchheecccCCCccceeecc----ccceeeeecccCCCcccccchhhhcccccceeee-----cccce
Q psy11350        385 DNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLL----TDLYIDVLESLNPGIGNIISSALKEQVEPIPLLL-----DIQKL  455 (471)
Q Consensus       385 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l  455 (471)
                      +..++++...+.+..+... ..+.....+.+.    ......+......+...+++-+.-..+..+....     .....
T Consensus       234 e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            6789999998887655433 111122222221    2234444445555556666555444444444322     35788


Q ss_pred             eeeecCCeEEEeec
Q psy11350        456 TFKFDSDLHAMVLN  469 (471)
Q Consensus       456 ~fs~dg~~lA~~~~  469 (471)
                      .|+++|+.+..++.
T Consensus       313 sis~~Gdi~~~~gp  326 (395)
T PF08596_consen  313 SISRNGDIFYWTGP  326 (395)
T ss_dssp             EE-TTS-EEEE-SS
T ss_pred             EECCCCCEEEEeCc
Confidence            89999998887653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.54  E-value=0.00031  Score=41.89  Aligned_cols=38  Identities=29%  Similarity=0.532  Sum_probs=33.8

Q ss_pred             cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       313 ~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      ++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.50  E-value=0.0028  Score=65.32  Aligned_cols=140  Identities=18%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEE
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFL  295 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l  295 (471)
                      ......|.-.|++.|+.+..+..+...+|..+  .|+.+                                |.+ +....
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K--------------------------------~aqlt~e~t  545 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSK--------------------------------FAQLTNEQT  545 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEe--ccccc--------------------------------ccccCCCce
Confidence            34457788888888888888877664222221  11110                                010 12235


Q ss_pred             EEEecCCeEEEEECCCCc--EEEE---eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee-EEEecccCcCEEE
Q psy11350        296 GTCCWDHSWRLWDLNQGQ--EVLH---QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC-IMFLEGHLKSVFS  369 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~--~~~~---~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~  369 (471)
                      +.|-.+..+..||.+-..  .+..   ........+|++-+.+| +||+|+.+|.||+||- .|+. -..+.+-..+|.+
T Consensus       546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~  623 (794)
T PF08553_consen  546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIG  623 (794)
T ss_pred             EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeE
Confidence            567778889999988642  2211   12234567788777666 7899999999999994 4433 3345566789999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        370 VDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       370 ~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      |..+.||++|++.+. ..|.+++.
T Consensus       624 iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  624 IDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEecCCCcEEEEeec-ceEEEEEE
Confidence            999999999877654 46777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.036  Score=49.50  Aligned_cols=194  Identities=15%  Similarity=0.156  Sum_probs=119.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecC-CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      |-+..|+++.|+|+.+.|++......-.||=..+|+.++++.-. -...-.|.|...+.     +.++--.++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-----fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-----FVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-----EEEEehhcceEEEEEE
Confidence            44556999999999999999888888888888889999887521 12334788888876     6777777888888877


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      ..+..+..+....                            -+....... ....-.++|.|....|+.+=.-.-+.||.
T Consensus       158 d~~t~~~~~~~~~----------------------------i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~  208 (316)
T COG3204         158 DADTTVISAKVQK----------------------------IPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFE  208 (316)
T ss_pred             cCCccEEeccceE----------------------------EeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEE
Confidence            6654333322110                            001111111 22467788888877777777666666666


Q ss_pred             CCCCcEE---EEeeCC-------CCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccC---------cCEE
Q psy11350        309 LNQGQEV---LHQEGH-------GKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL---------KSVF  368 (471)
Q Consensus       309 ~~~~~~~---~~~~~~-------~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~  368 (471)
                      +......   .....+       -..|.++.|++ .+.+|+-+..++.+.-.|.. |..+..+.-+.         ....
T Consensus       209 ~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaE  287 (316)
T COG3204         209 VTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAE  287 (316)
T ss_pred             EecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcc
Confidence            5433211   111111       13466778887 56677777778878777754 44443332111         1344


Q ss_pred             EEEEcCCCCE
Q psy11350        369 SVDFSPDGYH  378 (471)
Q Consensus       369 ~~~~sp~~~~  378 (471)
                      .++..++|.+
T Consensus       288 GiamDd~g~l  297 (316)
T COG3204         288 GIAMDDDGNL  297 (316)
T ss_pred             eeEECCCCCE
Confidence            5666666553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.46  E-value=0.02  Score=43.44  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             eEEEEECC---CC-CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy11350        283 VSRIKFHP---SG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM  358 (471)
Q Consensus       283 v~~l~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~  358 (471)
                      |++|++..   +| +.|++|+.|..|++|+-.  ..+..+. -...|++++-... ..++.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            45555544   33 589999999999999854  4555555 3556777777655 57889999999999974  23333


Q ss_pred             EecccCcCEEEEEEcC-C--C-CEEEEEeCCCcEE
Q psy11350        359 FLEGHLKSVFSVDFSP-D--G-YHLATGSEDNAVK  389 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp-~--~-~~l~s~s~dg~i~  389 (471)
                      ..+. ...++++++.. +  | .-|++|-.+|.|-
T Consensus        76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4442 33477776654 2  2 3688888888874

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.40  E-value=0.034  Score=42.24  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             EEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc
Q psy11350        197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE  276 (471)
Q Consensus       197 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~  276 (471)
                      |+++++..-..++.. -|+.|+.|..|++|+-  ...+..+....                                   
T Consensus         2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-----------------------------------   43 (111)
T PF14783_consen    2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFKG--DEIVAEITETD-----------------------------------   43 (111)
T ss_pred             eeEEEEEecCCCCcc-eEEEecCCcEEEEEeC--CcEEEEEeccc-----------------------------------
Confidence            567777653322221 6999999999999983  34444444332                                   


Q ss_pred             CCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-C--C-CEEEEEeCCCeEE
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-D--G-SVVATGGLDAFGR  347 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d--~-~~l~t~~~dg~i~  347 (471)
                           .|++++-... ..|+.+..+|+|-+|+-.  +.+...+... .++++++.. +  | .-|++|-.+|.|-
T Consensus        44 -----~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   44 -----KVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----ceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                 4777776655 668999999999999853  3444444333 356666544 2  2 2688888888764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.03  Score=56.95  Aligned_cols=196  Identities=15%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             CCcCeEEEEEecCCCEEEEEe------CCC--cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-C
Q psy11350        151 DTRPISYCSFSPDSQHVATAS------WSG--LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-G  221 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~------~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g  221 (471)
                      ....+.+.++||||+.+|...      .|+  .|.+++. .+.......+  ...+.-.|+|++.     .+.+.... .
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~-----~lw~v~dg~~  419 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDAD-----AVWVVVDGNT  419 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCC-----ceEEEecCcc
Confidence            334678899999999887654      243  5555554 2333222333  2378899999977     35554322 1


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      .+++.+-.....+..+.....                           ....    .....|..+.|+|||..++... +
T Consensus       420 ~~~v~~~~~~gql~~~~vd~g---------------------------e~~~----~~~g~Issl~wSpDG~RiA~i~-~  467 (591)
T PRK13616        420 VVRVIRDPATGQLARTPVDAS---------------------------AVAS----RVPGPISELQLSRDGVRAAMII-G  467 (591)
T ss_pred             eEEEeccCCCceEEEEeccCc---------------------------hhhh----ccCCCcCeEEECCCCCEEEEEE-C
Confidence            122222111111110000000                           0000    1122466666666666665544 3


Q ss_pred             CeEEE---EECCCCcE-E---EEe-eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CeeEEEecc--cCcCEEEE
Q psy11350        302 HSWRL---WDLNQGQE-V---LHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-GRCIMFLEG--HLKSVFSV  370 (471)
Q Consensus       302 g~i~i---wd~~~~~~-~---~~~-~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~--h~~~v~~~  370 (471)
                      |.|.+   -....|.. +   ..+ ..-...+.++.|.+++.++ ++..++...+|.+.- |.....+.+  ...++.++
T Consensus       468 g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~v  546 (591)
T PRK13616        468 GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAV  546 (591)
T ss_pred             CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEE
Confidence            55555   33333321 1   112 2233446889999998855 554444444554332 222212232  25677777


Q ss_pred             EEcCCCCEEEEEeCCCcEE
Q psy11350        371 DFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~  389 (471)
                      +=+++  .++....+|.+.
T Consensus       547 aa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        547 AASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ecCCc--eEEEEcCCceEE
Confidence            77763  455555666443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.38  E-value=0.13  Score=48.50  Aligned_cols=228  Identities=16%  Similarity=0.180  Sum_probs=117.6

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe----CC-------------
Q psy11350        158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA----QD-------------  220 (471)
Q Consensus       158 ~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~----~d-------------  220 (471)
                      ..++|+++.|+....+..|+-.|+.+.+....+......+....|..+...    ..+.+.    .|             
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~----t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC----TKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS----SEEEEEEEEGGG-----SHHHHHHH
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc----cEEEEEEEeehhccCccccHHHHHH
Confidence            456788888876665678999999998887777777777767788655432    122221    11             


Q ss_pred             ------CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--------EEecc---ccccccCCC-Ccc
Q psy11350        221 ------GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--------WRLDT---PLANLEGHE-PFR  282 (471)
Q Consensus       221 ------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--------~~~~~---~~~~~~~~~-~~~  282 (471)
                            ..|.--|+.+|+....+....  -+..+.|+|....++.-+..|-        |.+..   ....+..+. ...
T Consensus       162 ~~a~p~~~i~~idl~tG~~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~  239 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTGERKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES  239 (386)
T ss_dssp             HHC---EEEEEEETTT--EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred             HhhCCCceEEEEECCCCceeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence                  124455677776555544333  6788999998877776665554        33321   122222222 223


Q ss_pred             eEEEEECCCCCEEEEEec-----CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC-------------
Q psy11350        283 VSRIKFHPSGRFLGTCCW-----DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA-------------  344 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg-------------  344 (471)
                      +..=-|.|+|..|..-+.     +..|.-+|+.+++......  ......+-.++||++++-=+.|.             
T Consensus       240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE----------------
T ss_pred             cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceec
Confidence            555678999987665332     4468888998876543222  12344566678998876544432             


Q ss_pred             ---eEEEEeCCCCeeEEE---------ecccCc-CEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q psy11350        345 ---FGRVWDLRTGRCIMF---------LEGHLK-SVFSVDFSPDGYHLA-TGSEDNAVKIWDL  393 (471)
Q Consensus       345 ---~i~iwd~~~~~~~~~---------~~~h~~-~v~~~~~sp~~~~l~-s~s~dg~i~iwd~  393 (471)
                         .|+++++..+.....         +.++.. .=....|+|||++++ ++...|...||=+
T Consensus       318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence               567788877654321         111111 124678999998765 5556677666643

>KOG1008|consensus

Probab=97.37  E-value=3.9e-05  Score=74.19  Aligned_cols=158  Identities=14%  Similarity=0.212  Sum_probs=101.3

Q ss_pred             eecCCcCeEEEEEecC-CCEEEEEe----CCCcEEEEeCCCC--ceE--EEeec-CCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        148 QVGDTRPISYCSFSPD-SQHVATAS----WSGLCKLWTVPEC--ELV--QTFRG-HDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~-~~~l~tg~----~dg~i~iwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ..+|.++.++++|++- .+.||+|-    .|..+.|||+.++  .+.  ..|.+ ......+++|..+.+     ++++|
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-----lvlaG  172 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-----LVLAG  172 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-----hhhcc
Confidence            3478899999999984 45677663    4678999999876  221  12222 334556888886665     68888


Q ss_pred             eCCCcEEEEeCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC-CCCEE
Q psy11350        218 AQDGSVKLWSLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP-SGRFL  295 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l  295 (471)
                      .....+.++|++... ....+.                                         ...+..+...| .++++
T Consensus       173 m~sr~~~ifdlRqs~~~~~svn-----------------------------------------Tk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSVSSVN-----------------------------------------TKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccchhhhhhhhhhhhhhhhhh-----------------------------------------hhhcccceecCCCCCce
Confidence            888899999986321 111111                                         11366677788 67777


Q ss_pred             EEEecCCeEEEEE-CCCCc-EEEEeeCC----CCCeEEEEEeCC-CCEEEEEe-CCCeEEEEeCC
Q psy11350        296 GTCCWDHSWRLWD-LNQGQ-EVLHQEGH----GKPVYCMSFQGD-GSVVATGG-LDAFGRVWDLR  352 (471)
Q Consensus       296 ~~~~~dg~i~iwd-~~~~~-~~~~~~~~----~~~v~~~~~s~d-~~~l~t~~-~dg~i~iwd~~  352 (471)
                      ++-. ||.|.+|| .+.-+ ++..+...    ...+..++|.|. ..++++.. ..++|+++|+.
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            7666 99999999 33322 22222211    234899999993 23445544 45789999875

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.36  E-value=0.13  Score=48.93  Aligned_cols=214  Identities=13%  Similarity=0.097  Sum_probs=94.6

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCC----CceEEEeec---CC----CCEEEEEEeeCCCCCCccEEEEEe--CC----CcEE
Q psy11350        163 DSQHVATAS-WSGLCKLWTVPE----CELVQTFRG---HD----CNVGAIEFHPLPSEGAVCSLASCA--QD----GSVK  224 (471)
Q Consensus       163 ~~~~l~tg~-~dg~i~iwd~~~----~~~~~~~~~---h~----~~v~~l~~~~~~~~~~~~~l~s~~--~d----g~i~  224 (471)
                      +.++|+..+ .++.|+|.|+.+    .+..+++..   +.    ..-..+...|++.     +++|+-  .+    |-+.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-----imIS~lGd~~G~g~Ggf~  160 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-----IMISALGDADGNGPGGFV  160 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS-------EEEEEEEETTS-S--EEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-----EEEEeccCCCCCCCCcEE
Confidence            456777766 788999999973    344444432   11    2233455566665     566532  22    4577


Q ss_pred             EEeCCCCcceeeecCCC--CcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        225 LWSLDKDTPLANLEGHE--PFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      +.|-++.+.........  ..--..+.|.|..+.+++.....-      . .+.         --|.|..  +..+....
T Consensus       161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P------~-~~~---------~Gf~~~d--~~~~~yG~  222 (461)
T PF05694_consen  161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAP------S-MFE---------KGFNPED--LEAGKYGH  222 (461)
T ss_dssp             EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---H------H-HHT---------T---TTT--HHHH-S--
T ss_pred             EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCCh------h-hcc---------cCCChhH--hhcccccC
Confidence            88877776666655432  223456666776666666543211      0 000         0112211  22233457


Q ss_pred             eEEEEECCCCcEEEEeeCCC--CCeEEEEEeCC--CCEEE-EEeCCCeEEEEeC-CCCe----eEEEeccc---------
Q psy11350        303 SWRLWDLNQGQEVLHQEGHG--KPVYCMSFQGD--GSVVA-TGGLDAFGRVWDL-RTGR----CIMFLEGH---------  363 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~d--~~~l~-t~~~dg~i~iwd~-~~~~----~~~~~~~h---------  363 (471)
                      ++.+||+.+.+.++++.--.  .-...+.|..+  ..+-+ .+...++|..|-- ..++    .+..+..-         
T Consensus       223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~  302 (461)
T PF05694_consen  223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE  302 (461)
T ss_dssp             EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred             eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence            89999999999988876433  23456777553  33333 3334555655543 3332    22222110         


Q ss_pred             --------CcCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCccch
Q psy11350        364 --------LKSVFSVDFSPDGYHLATGS-EDNAVKIWDLRKRRLL  399 (471)
Q Consensus       364 --------~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~  399 (471)
                              ..-|+.|.+|.|.++|+.++ .+|.|+.||+......
T Consensus       303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence                    23478999999999886554 6899999999875443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.35  E-value=0.13  Score=50.43  Aligned_cols=197  Identities=16%  Similarity=0.164  Sum_probs=106.6

Q ss_pred             EEEEEEeeCCCCCCccEEEEEeCCCc----EEEEeCCCCcceeee-cCCCCcceEEEEECCCCCEEEEEeCCC-------
Q psy11350        197 VGAIEFHPLPSEGAVCSLASCAQDGS----VKLWSLDKDTPLANL-EGHEPFRVSRIKFHPSGRFLGTCCWDH-------  264 (471)
Q Consensus       197 v~~l~~~~~~~~~~~~~l~s~~~dg~----i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~i~~~~~d~-------  264 (471)
                      +....++|++..    ++++.+..|.    |+++|+.+++.+... ...   ....+.|.++++.|+....+.       
T Consensus       126 ~~~~~~Spdg~~----la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  126 LGGFSVSPDGKR----LAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFSSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEETTTSSE----EEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             eeeeeECCCCCE----EEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccceEEEeCCCCEEEEEEeCcccccccC
Confidence            346788898883    3444455454    999999999766532 221   223499999999877766444       


Q ss_pred             --e-----EEecccc----ccccCCCCcc-eEEEEECCCCCEEEEEecC----CeEEEEECCCC----cEEEEeeCCCCC
Q psy11350        265 --S-----WRLDTPL----ANLEGHEPFR-VSRIKFHPSGRFLGTCCWD----HSWRLWDLNQG----QEVLHQEGHGKP  324 (471)
Q Consensus       265 --~-----~~~~~~~----~~~~~~~~~~-v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~  324 (471)
                        .     +.+.++.    ..+....... ...+..++++++|+.....    ..+.+.|+..+    .....+..+...
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~  278 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG  278 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence              1     2222222    2233332323 6788999999987764432    35888898874    223333333333


Q ss_pred             e-EEEEEeCCCCEEEEEe---CCCeEEEEeCCCCee---EEEecccCcC--EEEEEEcCCCCEE-EEEeCCC--cEEEEE
Q psy11350        325 V-YCMSFQGDGSVVATGG---LDAFGRVWDLRTGRC---IMFLEGHLKS--VFSVDFSPDGYHL-ATGSEDN--AVKIWD  392 (471)
Q Consensus       325 v-~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~---~~~~~~h~~~--v~~~~~sp~~~~l-~s~s~dg--~i~iwd  392 (471)
                      + ..+... .+.+++...   ..+.|...++.....   ...+..|...  +..+..  .+.+| +..-.++  .|++++
T Consensus       279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence            3 344444 444444332   345677778776652   2245556553  455544  34444 4444444  488899


Q ss_pred             CCCccchheec
Q psy11350        393 LRKRRLLKWCT  403 (471)
Q Consensus       393 ~~~~~~~~~~~  403 (471)
                      +..+.....+.
T Consensus       356 ~~~~~~~~~~~  366 (414)
T PF02897_consen  356 LDDGKESREIP  366 (414)
T ss_dssp             TT-TEEEEEEE
T ss_pred             CCCCcEEeeec
Confidence            98444444343

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4441|consensus

Probab=97.34  E-value=0.028  Score=57.09  Aligned_cols=223  Identities=15%  Similarity=0.069  Sum_probs=118.3

Q ss_pred             ecCCCEEEEEeCCC------cEEEEeCCCCceEEEeec-CCCCEEEEEEeeCCCCCCccEEEEEeCC------CcEEEEe
Q psy11350        161 SPDSQHVATASWSG------LCKLWTVPECELVQTFRG-HDCNVGAIEFHPLPSEGAVCSLASCAQD------GSVKLWS  227 (471)
Q Consensus       161 s~~~~~l~tg~~dg------~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~iwd  227 (471)
                      +..+.+++.|+.++      .+..||..++.......- +...-.+++...+ .     +.++||.|      .++..||
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~-~-----lYv~GG~~~~~~~l~~ve~YD  355 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG-K-----LYVVGGYDSGSDRLSSVERYD  355 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC-E-----EEEEccccCCCcccceEEEec
Confidence            33456777887763      678888877644332221 2222345555544 2     67888888      3577888


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe------------ccccccccCCCCcceEEEEECCCCCEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL------------DTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~------------~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      ..+++-...-..... ....-.-.-+|...++|+.||.-.+            |.....+... ........+  +|...
T Consensus       356 ~~~~~W~~~a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~--~g~iY  431 (571)
T KOG4441|consen  356 PRTNQWTPVAPMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVL--GGKLY  431 (571)
T ss_pred             CCCCceeccCCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEE--CCEEE
Confidence            877763331111111 2222223346788889998876222            2222222111 111222222  57777


Q ss_pred             EEEecCC------eEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCCCe-----EEEEeCCCCeeEE--Ee
Q psy11350        296 GTCCWDH------SWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLDAF-----GRVWDLRTGRCIM--FL  360 (471)
Q Consensus       296 ~~~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~dg~-----i~iwd~~~~~~~~--~~  360 (471)
                      ++|+.++      ++..||..+.+-...  +..-.... .++. -++.+.+.||.|+.     |..||..+.+-..  .+
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM  509 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence            7777654      477888877643222  11111111 1222 26778888887763     7778887664332  22


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCCc-----EEEEECCCcc
Q psy11350        361 EGHLKSVFSVDFSPDGYHLATGSEDNA-----VKIWDLRKRR  397 (471)
Q Consensus       361 ~~h~~~v~~~~~sp~~~~l~s~s~dg~-----i~iwd~~~~~  397 (471)
                      ......+....+  ++...+.|+.||.     |..||..+.+
T Consensus       510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            222233333333  5677888887764     6666665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.31  E-value=0.093  Score=49.51  Aligned_cols=179  Identities=15%  Similarity=0.149  Sum_probs=104.3

Q ss_pred             CCEEEEEeC----------CCcEEEEeCCCC----ceEEEe--ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        164 SQHVATASW----------SGLCKLWTVPEC----ELVQTF--RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       164 ~~~l~tg~~----------dg~i~iwd~~~~----~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+|++|+.          .|.|.++++.+.    ..+..+  ....++|++++-.  +.     .|+.+ ..+.|.+|+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-----~lv~~-~g~~l~v~~  113 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-----RLVVA-VGNKLYVYD  113 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-----EEEEE-ETTEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-----EEEEe-ecCEEEEEE
Confidence            467887752          289999999874    122211  2347889998877  22     34443 358999999


Q ss_pred             CCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        228 LDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       228 ~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      +...+ ....-..+.                                      ...+.++...  ++++++|+....+.+
T Consensus       114 l~~~~~l~~~~~~~~--------------------------------------~~~i~sl~~~--~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen  114 LDNSKTLLKKAFYDS--------------------------------------PFYITSLSVF--KNYILVGDAMKSVSL  153 (321)
T ss_dssp             EETTSSEEEEEEE-B--------------------------------------SSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             ccCcccchhhheecc--------------------------------------eEEEEEEecc--ccEEEEEEcccCEEE
Confidence            97765 222111111                                      1235555554  568999988888887


Q ss_pred             EECCC-CcEEEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-------Ce----eEEEecccCcCEEEE--
Q psy11350        307 WDLNQ-GQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-------GR----CIMFLEGHLKSVFSV--  370 (471)
Q Consensus       307 wd~~~-~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-------~~----~~~~~~~h~~~v~~~--  370 (471)
                      +..+. ...+..+  ......++++.|-+++..++++..+|.+.++....       +.    ....+. ....|+++  
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~  232 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR  232 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence            75443 2222222  22355688999987767999999999999997652       22    122232 23567777  


Q ss_pred             -EEcC--CCC------EEEEEeCCCcEEEE
Q psy11350        371 -DFSP--DGY------HLATGSEDNAVKIW  391 (471)
Q Consensus       371 -~~sp--~~~------~l~s~s~dg~i~iw  391 (471)
                       .+.|  .+.      .++.++.+|.|.+.
T Consensus       233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence             5555  222      47788899998733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.27  E-value=0.17  Score=53.05  Aligned_cols=213  Identities=12%  Similarity=0.054  Sum_probs=119.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC--------EEEEEEeeCC--C---------CCCccEEEEEeCCCcEE
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCN--------VGAIEFHPLP--S---------EGAVCSLASCAQDGSVK  224 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~~~--~---------~~~~~~l~s~~~dg~i~  224 (471)
                      +..|+.++.++.|.-.|..+|+.+..+......        ...+.+....  .         ......++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888999999999999998887643211        1223332210  0         00011477788899999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC--CCCEEEEEec--
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCW--  300 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~--  300 (471)
                      -.|.++|+.+..+.....                       +++........   . .-..+.-.|  .+..+++|+.  
T Consensus       274 ALDA~TGk~~W~fg~~G~-----------------------vdl~~~~g~~~---~-g~~~~ts~P~V~~g~VIvG~~v~  326 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGT-----------------------VDLTAGMGTTP---P-GYYYPTSPPLVAGTTVVIGGRVA  326 (764)
T ss_pred             EEECCCCCEEEEecCCCc-----------------------eeeecccCcCC---C-cccccccCCEEECCEEEEEeccc
Confidence            999988888776643221                       00000000000   0 000011111  1234444432  


Q ss_pred             --------CCeEEEEECCCCcEEEEeeCC---------CC--------Ce-EEEEEeCCCCEEEEEe-------------
Q psy11350        301 --------DHSWRLWDLNQGQEVLHQEGH---------GK--------PV-YCMSFQGDGSVVATGG-------------  341 (471)
Q Consensus       301 --------dg~i~iwd~~~~~~~~~~~~~---------~~--------~v-~~~~~s~d~~~l~t~~-------------  341 (471)
                              +|.|+-+|.++|+.+-.+..-         .+        .+ ..+++++...+++.+.             
T Consensus       327 d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~  406 (764)
T TIGR03074       327 DNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRT  406 (764)
T ss_pred             ccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccc
Confidence                    688999999999887665420         00        01 2344555444444322             


Q ss_pred             -----CCCeEEEEeCCCCeeEEEecccCcC---------EEEEEEcC-CCC---EEEEEeCCCcEEEEECCCccchheec
Q psy11350        342 -----LDAFGRVWDLRTGRCIMFLEGHLKS---------VFSVDFSP-DGY---HLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       342 -----~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~~~~sp-~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                           ..+.|.-.|.++|+..-.++.....         ..-+.+.. +|+   .++.++.+|.+.+.|-++|+++....
T Consensus       407 ~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       407 PADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence                 2345677788899887766541111         11122322 553   78999999999999999999887544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.13  Score=47.71  Aligned_cols=100  Identities=16%  Similarity=0.148  Sum_probs=67.9

Q ss_pred             eEEEEECCCCCEEEEEecC-CeEEEEECCC--C----cE-EEEeeCCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEeCCC
Q psy11350        283 VSRIKFHPSGRFLGTCCWD-HSWRLWDLNQ--G----QE-VLHQEGHGKPVYCMSFQGDGSVVATGGLDA-FGRVWDLRT  353 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~--~----~~-~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg-~i~iwd~~~  353 (471)
                      -+.|+||||++.|+.+... +.|..|++..  +    +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            5679999999887777654 7788887752  1    11 112222344555678888888876555554 89999987 


Q ss_pred             CeeEEEecccCcCEEEEEEcC-CCCEEEEEe
Q psy11350        354 GRCIMFLEGHLKSVFSVDFSP-DGYHLATGS  383 (471)
Q Consensus       354 ~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s  383 (471)
                      |+.+..+.-....+++++|-- +.+.|+..+
T Consensus       244 G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         244 GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            999888887767888888863 445554443

>PHA02713 hypothetical protein; Provisional

Probab=97.23  E-value=0.017  Score=58.76  Aligned_cols=95  Identities=6%  Similarity=-0.020  Sum_probs=52.0

Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeE-EEEEeCCCCEEEEEeCC------CeEEEEeCCC-C--eeEEEecccCcCEEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVY-CMSFQGDGSVVATGGLD------AFGRVWDLRT-G--RCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~t~~~d------g~i~iwd~~~-~--~~~~~~~~h~~~v~~~~  371 (471)
                      ..+..||..+.+-...-.-...... +++ .-++++.+.||.+      ..+..||..+ .  ..+..+.........+.
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            3477788776543211110111111 222 2256777777754      2467899886 3  33344443333333333


Q ss_pred             EcCCCCEEEEEeCCC--cEEEEECCCccch
Q psy11350        372 FSPDGYHLATGSEDN--AVKIWDLRKRRLL  399 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg--~i~iwd~~~~~~~  399 (471)
                      +  +|++.++||.+|  ++..||..+.+=.
T Consensus       511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        511 H--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             E--CCEEEEEeeecceeehhhcCccccccc
Confidence            3  678899999888  6777777766533

>KOG2395|consensus

Probab=97.21  E-value=0.0085  Score=57.38  Aligned_cols=148  Identities=11%  Similarity=0.063  Sum_probs=96.8

Q ss_pred             EEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCC--ccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcce
Q psy11350        168 ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA--VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRV  245 (471)
Q Consensus       168 ~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  245 (471)
                      .++..-..|+-.|++.|+.+...+.|.. |+-+.+.|+.....  ...-+.|-.|..|.-||++-...-           
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----------  417 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----------  417 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----------
Confidence            3555566788889999999999988766 77888888764210  112345667888999998622110           


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeCCCCC
Q psy11350        246 SRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE-VLHQEGHGKP  324 (471)
Q Consensus       246 ~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~  324 (471)
                       .++|..                   ...+..  .....|.+-..+ .++++|+.+|.|++||- .+.. ...+.+.+.+
T Consensus       418 -kl~~~q-------------------~kqy~~--k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~  473 (644)
T KOG2395|consen  418 -KLAVVQ-------------------SKQYST--KNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA  473 (644)
T ss_pred             -eeeeee-------------------cccccc--ccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCc
Confidence             011100                   001111  123445554444 48999999999999997 4433 3456788899


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy11350        325 VYCMSFQGDGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~~~dg~i~iwd~~  352 (471)
                      |..+..+.||++|++.+ +.++.+.++.
T Consensus       474 I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  474 IKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            99999999999877654 6677777653

>KOG2079|consensus

Probab=97.18  E-value=0.0013  Score=67.74  Aligned_cols=101  Identities=21%  Similarity=0.260  Sum_probs=75.9

Q ss_pred             CCCEEEEEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEE
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS  369 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  369 (471)
                      .+..++.|+..|.+-..|+... .+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3456888888899999888653 111222234689999999999999999999999999999999998888877666555


Q ss_pred             EE---EcCCCCEEEEEeCCCcEEEEEC
Q psy11350        370 VD---FSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       370 ~~---~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +-   +..++..++++..-|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            43   3345566778777776  5654

>KOG2444|consensus

Probab=97.18  E-value=0.0013  Score=56.10  Aligned_cols=105  Identities=15%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEE-eeCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC-cCEE
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVLH-QEGHGKPVY-CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL-KSVF  368 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~-~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~  368 (471)
                      +..+++|+.+|.|.+|.......... ...-...|. .+.-..++.+..+++.+|.|+.|++.-.+.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            46789999999999999863221111 111122222 22223366789999999999999999888887777777 4555


Q ss_pred             EEEEcCCCCEEEEE--eCCCcEEEEECCCc
Q psy11350        369 SVDFSPDGYHLATG--SEDNAVKIWDLRKR  396 (471)
Q Consensus       369 ~~~~sp~~~~l~s~--s~dg~i~iwd~~~~  396 (471)
                      .+..+..++.++.+  |.|..++.|++..-
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhhh
Confidence            55555556666666  66777777776543

>PRK10115 protease 2; Provisional

Probab=97.16  E-value=0.42  Score=50.00  Aligned_cols=235  Identities=7%  Similarity=-0.078  Sum_probs=120.1

Q ss_pred             cCeEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-----Cc
Q psy11350        153 RPISYCSFSPDSQHVATASW-----SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-----GS  222 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~  222 (471)
                      -.+..+.|||||++|+.+..     ...|++.|+.+|..+...-...  -..++|.+++..    ++++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~----~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWT----FYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCE----EEEEEecCCCCCCCE
Confidence            45777899999999886542     2368899998886432221111  146999998873    44443322     35


Q ss_pred             EEEEeCCCC--cceeeecCCCCcceEEEEECCCCCEEEEEeCCCe----EEec--cc---cccccCCCCcceEEEEECCC
Q psy11350        223 VKLWSLDKD--TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----WRLD--TP---LANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       223 i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~----~~~~--~~---~~~~~~~~~~~v~~l~~~~~  291 (471)
                      |..+++.++  +....+.............+.++++++..+..+.    +.+.  .+   ...+..........+. +. 
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  278 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-  278 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence            777888877  3333444333212224445658888776655543    2221  11   0111111111222222 22 


Q ss_pred             CCEEEEEecC----CeEEEEECCCCcEEEEeeCC-C-CCeEEEEEeCCCCEEEEEeCCCeEEE--EeCCCCeeEEEec-c
Q psy11350        292 GRFLGTCCWD----HSWRLWDLNQGQEVLHQEGH-G-KPVYCMSFQGDGSVVATGGLDAFGRV--WDLRTGRCIMFLE-G  362 (471)
Q Consensus       292 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~s~d~~~l~t~~~dg~i~i--wd~~~~~~~~~~~-~  362 (471)
                      +..|+..+..    ..|...++........+..+ . ..+..+.+. .+.++++...+|.-++  +++.++ .+..+. .
T Consensus       279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~  356 (686)
T PRK10115        279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD  356 (686)
T ss_pred             CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC
Confidence            2334333332    23444455421122333344 2 367888887 3356666666776544  454333 333333 2


Q ss_pred             cCcCEEEEEEc--CCC-CEEEEEeC---CCcEEEEECCCcc
Q psy11350        363 HLKSVFSVDFS--PDG-YHLATGSE---DNAVKIWDLRKRR  397 (471)
Q Consensus       363 h~~~v~~~~~s--p~~-~~l~s~s~---dg~i~iwd~~~~~  397 (471)
                      ....+..+.++  +++ .++++.+.   -+.+..+|+.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            22233334454  333 34544433   3678889988764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.13  E-value=0.23  Score=50.20  Aligned_cols=192  Identities=10%  Similarity=0.023  Sum_probs=114.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCC-CCEEE----------EEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHD-CNVGA----------IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~----------l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      +..|++++.++.|+-.|..+|+.+..+.... ..+..          +++.  +.     .++.++.|+.|.-.|..+|+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-----~v~v~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-----KVFFGTLDARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-----EEEEEcCCCEEEEEECCCCC
Confidence            4577777778999999999999888765321 11111          1111  12     47778889999999999998


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEE-EEECCCCCEEEEEe------cCCeEE
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSR-IKFHPSGRFLGTCC------WDHSWR  305 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~~~------~dg~i~  305 (471)
                      .+..........                                   ...+++ -... ++ .++++.      .+|.|.
T Consensus       142 ~~W~~~~~~~~~-----------------------------------~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~  184 (527)
T TIGR03075       142 VVWSKKNGDYKA-----------------------------------GYTITAAPLVV-KG-KVITGISGGEFGVRGYVT  184 (527)
T ss_pred             EEeecccccccc-----------------------------------cccccCCcEEE-CC-EEEEeecccccCCCcEEE
Confidence            877654321100                                   000000 0000 22 333332      267888


Q ss_pred             EEECCCCcEEEEeeCCC-------------------------------CCe-EEEEEeCCCCEEEEEeCC-----C----
Q psy11350        306 LWDLNQGQEVLHQEGHG-------------------------------KPV-YCMSFQGDGSVVATGGLD-----A----  344 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~-------------------------------~~v-~~~~~s~d~~~l~t~~~d-----g----  344 (471)
                      .+|.++|+.+-.+..-.                               ..+ ..+++.|...+|+.+...     +    
T Consensus       185 AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~  264 (527)
T TIGR03075       185 AYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRP  264 (527)
T ss_pred             EEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCC
Confidence            88888887765532210                               011 134666655666665421     2    


Q ss_pred             -------eEEEEeCCCCeeEEEecccCcC---------EEEEEEcCCCC---EEEEEeCCCcEEEEECCCccch
Q psy11350        345 -------FGRVWDLRTGRCIMFLEGHLKS---------VFSVDFSPDGY---HLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       345 -------~i~iwd~~~~~~~~~~~~h~~~---------v~~~~~sp~~~---~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                             .|.-.|+++|+..-.++.....         ..-+.+..+|+   .++.++.+|.+.+.|-++|+++
T Consensus       265 gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       265 GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                   5777889999887666532211         12222324665   7889999999999999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.09  E-value=0.23  Score=45.79  Aligned_cols=238  Identities=13%  Similarity=0.117  Sum_probs=110.7

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceEEEe--ecC---CCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTV-PECELVQTF--RGH---DCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~--~~h---~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      -..++..+.|..+..-+++|. .|.|  +.. ..|+.=...  ...   .....+|.|... .     .+++| ..+ +.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~-----g~ivG-~~g-~l   83 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-E-----GWIVG-EPG-LL   83 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-E-----EEEEE-ETT-EE
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-c-----eEEEc-CCc-eE
Confidence            345889999985555566665 5543  333 223221111  111   123567777543 2     34444 444 44


Q ss_pred             EEeCCCCcceeeecC--CCCcceEEEEECCCCCEEEEEeCCCeEEecccc---ccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        225 LWSLDKDTPLANLEG--HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       225 iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      +...+.|+.-..+..  ..+.....+....++..++++.....++....-   ..+.......+..+.-+++|++++++.
T Consensus        84 l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~  163 (302)
T PF14870_consen   84 LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS  163 (302)
T ss_dssp             EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred             EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence            444455544333321  111233334443444443333322222221111   111112234688889999999999988


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC-CCCeeEEE----ecccCcCEEEEEEcC
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL-RTGRCIMF----LEGHLKSVFSVDFSP  374 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~-~~~~~~~~----~~~h~~~v~~~~~sp  374 (471)
                      ......-||--...-...-......|.+|.|+|++.+.+++ ..|.|+.=+. ........    +....-.+..++|.+
T Consensus       164 ~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  164 RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred             cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence            77777788865332222333356789999999998876655 8888888772 22221111    112223589999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      ++...++|+ .|++ +...+.|+.-+..
T Consensus       243 ~~~~wa~gg-~G~l-~~S~DgGktW~~~  268 (302)
T PF14870_consen  243 PNEIWAVGG-SGTL-LVSTDGGKTWQKD  268 (302)
T ss_dssp             SS-EEEEES-TT-E-EEESSTTSS-EE-
T ss_pred             CCCEEEEeC-CccE-EEeCCCCccceEC
Confidence            877777665 4554 4566777655543

>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04

Probab=97.05  E-value=0.00082  Score=41.34  Aligned_cols=26  Identities=50%  Similarity=0.755  Sum_probs=22.5

Q ss_pred             CChHHHHHHHHHhCCCcccccccccH
Q psy11350         82 TDDNQVKLNLRQLGEPICLFGEEYSL  107 (471)
Q Consensus        82 ~~~~~~~~~l~~~~~p~~~~~~~~s~  107 (471)
                      +.+.+|+..|+.+|+||++|||...-
T Consensus         1 ~~d~eV~~~LR~lgePi~lFGE~~~~   26 (44)
T smart00500        1 LPDSEVIRRLRELGEPITLFGEDDQE   26 (44)
T ss_pred             CCHHHHHHHHHHcCCCeeecCCChHH
Confidence            45788999999999999999998643

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.05  E-value=0.11  Score=52.92  Aligned_cols=89  Identities=12%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEE---EeCCCCee-E---EEec-ccCcCEEEEEE
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV---WDLRTGRC-I---MFLE-GHLKSVFSVDF  372 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~i---wd~~~~~~-~---~~~~-~h~~~v~~~~~  372 (471)
                      .+.+.+.++..+....   .....|..+.|||||..++... ++.|++   -....|.. +   ..+. +-...+.++.|
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence            3556666776554433   3356799999999999888765 577776   44344431 1   1122 22234688999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECC
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      .+++.++ .+..++...+|.+.
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEe
Confidence            9988854 55555555556543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.00  E-value=0.12  Score=46.06  Aligned_cols=147  Identities=22%  Similarity=0.245  Sum_probs=96.9

Q ss_pred             EEEEEeeCCCCCCccEEEEEeCCCc-EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc
Q psy11350        198 GAIEFHPLPSEGAVCSLASCAQDGS-VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE  276 (471)
Q Consensus       198 ~~l~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~  276 (471)
                      ..|+|+|....    .++.+-.-|+ ..++|....+....+.....                              +.+.
T Consensus        71 Hgi~~~p~~~r----avafARrPGtf~~vfD~~~~~~pv~~~s~~~------------------------------RHfy  116 (366)
T COG3490          71 HGIAFHPALPR----AVAFARRPGTFAMVFDPNGAQEPVTLVSQEG------------------------------RHFY  116 (366)
T ss_pred             CCeecCCCCcc----eEEEEecCCceEEEECCCCCcCcEEEecccC------------------------------ceee
Confidence            46888887764    5666666665 45788877765554443222                              2233


Q ss_pred             CCCCcceEEEEECCCCCEEEEEecC-----CeEEEEECCCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeC--------
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCCWD-----HSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGL--------  342 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~--------  342 (471)
                      +|       =.|||||.+|+..-+|     |.|-|||.+.+ +.+-.+..|.-.-..+.+.+||+.++.+..        
T Consensus       117 GH-------Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdf  189 (366)
T COG3490         117 GH-------GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDF  189 (366)
T ss_pred             cc-------cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceeccccc
Confidence            33       3588999988876544     67999999854 456677888888889999999998887642        


Q ss_pred             ----------CCeEEEEeCCCCeeEEE--ec--ccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        343 ----------DAFGRVWDLRTGRCIMF--LE--GHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       343 ----------dg~i~iwd~~~~~~~~~--~~--~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                                .-++.+.|..+|..+..  +.  .+.-.|..++..+||..++.+-..
T Consensus       190 gR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         190 GRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             CccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence                      12344455555554432  22  344578889999998877766443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.94  E-value=0.27  Score=43.97  Aligned_cols=181  Identities=10%  Similarity=0.033  Sum_probs=114.6

Q ss_pred             eEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        155 ISYCSFSPDSQHVATASWSG--LCKLWTVPECELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      .-.+.|..+|.++-+.+.-|  .|+.+|+.+++......-.. ----.++...+.      +..-.-.++...+||..+-
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~------l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK------LYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE------EEEEESSSSEEEEEETTTT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE------EEEEEecCCeEEEEccccc
Confidence            34688878888887777666  79999999999876655322 112234444332      4445567789999999888


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCC
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  311 (471)
                      +.+..+.-..                                        .=+.++  .++..|+.+.....|+.+|..+
T Consensus       121 ~~~~~~~y~~----------------------------------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  121 KKIGTFPYPG----------------------------------------EGWGLT--SDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             EEEEEEE-SS----------------------------------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred             eEEEEEecCC----------------------------------------cceEEE--cCCCEEEEECCccceEEECCcc
Confidence            7777665332                                        234454  4677788887788999999988


Q ss_pred             CcEEEEeeCC--C---CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc------------c---CcCEEEEE
Q psy11350        312 GQEVLHQEGH--G---KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG------------H---LKSVFSVD  371 (471)
Q Consensus       312 ~~~~~~~~~~--~---~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~~~  371 (471)
                      .+....+.-.  .   ..++-+.|- +|.+.|=.=....|...|..+|+.+..+.-            +   ..-.+.||
T Consensus       159 f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIA  237 (264)
T PF05096_consen  159 FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIA  237 (264)
T ss_dssp             -SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred             cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEe
Confidence            8776665432  2   235566775 666666566677889999999988776531            1   24588999


Q ss_pred             EcCCCCEEEEEeC
Q psy11350        372 FSPDGYHLATGSE  384 (471)
Q Consensus       372 ~sp~~~~l~s~s~  384 (471)
                      |.|....|+..|.
T Consensus       238 yd~~~~~l~vTGK  250 (264)
T PF05096_consen  238 YDPETDRLFVTGK  250 (264)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EeCCCCEEEEEeC
Confidence            9987665544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499|consensus

Probab=96.89  E-value=0.25  Score=42.74  Aligned_cols=207  Identities=12%  Similarity=0.111  Sum_probs=115.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC--cceeeec--
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD--TPLANLE--  238 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~--  238 (471)
                      +.++.+--..|.|.-||..+.+..+. +.+.  ++.++.+--.+..  ..+.+.++..-.|.-||....  ....++.  
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~--q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev  102 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGP--QEFAVGCGSKFVIVNWDGVSESAKVYRTLFEV  102 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCC--ceEEEeecceEEEEEcccccceeeeeeecccc
Confidence            34555555677788899876554332 2221  1223333222211  113444444444555773222  2222211  


Q ss_pred             --CCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCC-------cceEEEEECCCCCEEEE-EecCCeE
Q psy11350        239 --GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEP-------FRVSRIKFHPSGRFLGT-CCWDHSW  304 (471)
Q Consensus       239 --~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~-------~~v~~l~~~~~~~~l~~-~~~dg~i  304 (471)
                        .......+.-..+|+|++++-.-.+-...+...    -.-+.+|..       .--..++|+.+.+.++. -+.+-+|
T Consensus       103 ~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  103 QPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             CchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence              111236677788999999654444433222100    011122211       12346888877775554 4566778


Q ss_pred             EEEE--CCCCc-----EEEEeeC---CC-CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEc
Q psy11350        305 RLWD--LNQGQ-----EVLHQEG---HG-KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS  373 (471)
Q Consensus       305 ~iwd--~~~~~-----~~~~~~~---~~-~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  373 (471)
                      .-||  +.+|.     .+..+..   .. ..--.+++..+|.+.++.-..++|...|..+|+.+..+.-....|++++|-
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            7787  55553     2222221   11 111245556688898998899999999999999999998888999999996


Q ss_pred             C
Q psy11350        374 P  374 (471)
Q Consensus       374 p  374 (471)
                      -
T Consensus       263 G  263 (310)
T KOG4499|consen  263 G  263 (310)
T ss_pred             C
Confidence            3

>KOG2395|consensus

Probab=96.86  E-value=0.016  Score=55.61  Aligned_cols=145  Identities=14%  Similarity=0.183  Sum_probs=92.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      +|.++.....|.-.|++.|+.+..+..+.+  |+-+.+.|+.+.-                           .+  .+. 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~---------------------------Ql--~~e-  395 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFA---------------------------QL--TSE-  395 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchh---------------------------cc--ccc-
Confidence            345555666677778888888877776664  4444444443210                           01  111 


Q ss_pred             CEEEEEecCCeEEEEECCCCc--EEEEeeCC----CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE-EEecccCc
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQ--EVLHQEGH----GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLK  365 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~----~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~h~~  365 (471)
                       .-+.|-.+..|.-||.+-..  .+...++|    .....|++-..+| +|++|+.+|.|++||- .+... ..+.+-..
T Consensus       396 -~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~  472 (644)
T KOG2395|consen  396 -QTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGD  472 (644)
T ss_pred             -ccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCC
Confidence             12346668889999987432  22222333    2345566555455 7899999999999996 55433 34677788


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +|..|..+.+|++|+..+ +..+.+.++
T Consensus       473 ~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  473 AIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            999999999999887665 456666665

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.85  E-value=0.0039  Score=39.45  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=30.0

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL  186 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~  186 (471)
                      ...|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.85  E-value=0.2  Score=45.36  Aligned_cols=143  Identities=14%  Similarity=0.064  Sum_probs=87.5

Q ss_pred             cceEEEEECCCCCEEEEEe--CCCe-EEeccc---cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE-CCCCcEE
Q psy11350        243 FRVSRIKFHPSGRFLGTCC--WDHS-WRLDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD-LNQGQEV  315 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~--~d~~-~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~  315 (471)
                      ..+.+.++++++..++...  .++. +.....   .....  ....+..-.|++++...+....+...+++. ...+...
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            4688999999999888777  4433 333221   11111  123678889999977776666666666663 3333322


Q ss_pred             E-EeeC--CCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCC---CC------eeEEEecccCcCEEEEEEcCCCCEEE
Q psy11350        316 L-HQEG--HGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLR---TG------RCIMFLEGHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       316 ~-~~~~--~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~---~~------~~~~~~~~h~~~v~~~~~sp~~~~l~  380 (471)
                      . ....  -...|..+.+||||..++.-.   .++.|.+--+.   .+      .++.........++.++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1 1111  112899999999999877655   35667666432   22      11222223346899999999988777


Q ss_pred             EEeCCCc
Q psy11350        381 TGSEDNA  387 (471)
Q Consensus       381 s~s~dg~  387 (471)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            6655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins

Probab=96.84  E-value=0.0011  Score=36.95  Aligned_cols=20  Identities=60%  Similarity=0.988  Sum_probs=13.8

Q ss_pred             HHHHHHHhCCCccccccccc
Q psy11350         87 VKLNLRQLGEPICLFGEEYS  106 (471)
Q Consensus        87 ~~~~l~~~~~p~~~~~~~~s  106 (471)
                      |+..|+++|+||++|||...
T Consensus         1 V~~~LR~lgePi~lFGE~~~   20 (30)
T PF08799_consen    1 VRRRLRELGEPITLFGETDA   20 (30)
T ss_dssp             HHHHHHHCT--SCETT--HH
T ss_pred             ChHHHHhcCCChhhhCCChH
Confidence            56889999999999999754

PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.

>KOG2079|consensus

Probab=96.74  E-value=0.067  Score=55.87  Aligned_cols=101  Identities=18%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPEC-ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE  241 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  241 (471)
                      .+..++.|+..|.+-..|+... .+...=..-.++|++++|+.++.     .++.|-.+|.|.+||+..+..++.+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-----~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-----LLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-----eeccccCCCcEEEEEccCCcceeeeeecC
Confidence            4567889998899988886542 11122123468999999999998     78889999999999999988887765433


Q ss_pred             --CcceEEEEECCCCCEEEEEeCCCe-EEe
Q psy11350        242 --PFRVSRIKFHPSGRFLGTCCWDHS-WRL  268 (471)
Q Consensus       242 --~~~v~~~~~s~~~~~i~~~~~d~~-~~~  268 (471)
                        ...+-.+.+..++..++++...|. |..
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence              335556666777777888888775 443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.72  E-value=0.26  Score=43.91  Aligned_cols=183  Identities=13%  Similarity=0.143  Sum_probs=110.3

Q ss_pred             EEecCCCEEEEEeC-----CCcEEEEeCCCC-ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-------------
Q psy11350        159 SFSPDSQHVATASW-----SGLCKLWTVPEC-ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-------------  219 (471)
Q Consensus       159 ~~s~~~~~l~tg~~-----dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-------------  219 (471)
                      .|||||.+|+..-.     -|.|-|||...+ ..+..+..|.-.-..+.|.+++.     .++.+..             
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGr-----tlvvanGGIethpdfgR~~l  194 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGR-----TLVVANGGIETHPDFGRTEL  194 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCc-----EEEEeCCceecccccCcccc
Confidence            68999999986643     378999998743 55667778877778999999998     3444321             


Q ss_pred             -----CCcEEEEeCCCCcceeeecCC---CCcceEEEEECCCCCEEEEEeCCCeEE-------e---ccccccccCCC--
Q psy11350        220 -----DGSVKLWSLDKDTPLANLEGH---EPFRVSRIKFHPSGRFLGTCCWDHSWR-------L---DTPLANLEGHE--  279 (471)
Q Consensus       220 -----dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~i~~~~~d~~~~-------~---~~~~~~~~~~~--  279 (471)
                           .-++.+.|..+|..+.+....   ....+..+...+||...+.+-..|.-+       .   ..+...+....  
T Consensus       195 NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~  274 (366)
T COG3490         195 NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQ  274 (366)
T ss_pred             chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHH
Confidence                 112444554555554433222   223688889999998888776555411       1   11111111110  


Q ss_pred             ----CcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        280 ----PFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       280 ----~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                          ...|-+|+.+.+..+++..+ ..+...+||..++..+..-.-.  ....++  +...-+++.+.+|.+.++.
T Consensus       275 ~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         275 TAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence                12467788887666655554 4556789999999876543211  111222  2333456666788887773

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.70  E-value=0.17  Score=46.62  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=77.9

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC-C
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL-D  229 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~-~  229 (471)
                      -.+.+..+..++||++++++.......-|+.-...-...-+.-...|..+.|.|++.      |......|.|+.=+. .
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~------lw~~~~Gg~~~~s~~~~  216 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN------LWMLARGGQIQFSDDPD  216 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-------EEEEETTTEEEEEE-TT
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC------EEEEeCCcEEEEccCCC
Confidence            346788888999999999998555566787533222222233467899999999976      555568888888772 2


Q ss_pred             CCcceee--ecC-CCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc-----CCCCcceEEEEECCCCCEEEEEecC
Q psy11350        230 KDTPLAN--LEG-HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE-----GHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       230 ~~~~~~~--~~~-~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      ....-..  ... .....+.+++|.+++...++|+....+.-...-.+..     ...+..++.|.|.++.+-++.| .+
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~  295 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QD  295 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CC
Confidence            2211111  111 2334689999999988888776665544422111111     1123458889998665555554 47


Q ss_pred             CeEEEE
Q psy11350        302 HSWRLW  307 (471)
Q Consensus       302 g~i~iw  307 (471)
                      |.|.-|
T Consensus       296 G~ll~~  301 (302)
T PF14870_consen  296 GVLLRY  301 (302)
T ss_dssp             TEEEEE
T ss_pred             cEEEEe
Confidence            776554

>PHA03098 kelch-like protein; Provisional

Probab=96.66  E-value=0.12  Score=52.56  Aligned_cols=103  Identities=13%  Similarity=0.108  Sum_probs=50.4

Q ss_pred             CCCEEEEEecC------CeEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCC--------CeEEEEeCCCC
Q psy11350        291 SGRFLGTCCWD------HSWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLD--------AFGRVWDLRTG  354 (471)
Q Consensus       291 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~d--------g~i~iwd~~~~  354 (471)
                      +++.++.|+.+      ..+..||..+.+-...  +...... .+++ ..++.+++.||.+        ..+.+||..+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            34555555521      3577888876542211  1100111 1222 2356677777643        23888998776


Q ss_pred             eeEE--EecccCcCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy11350        355 RCIM--FLEGHLKSVFSVDFSPDGYHLATGSED-----NAVKIWDLRKRR  397 (471)
Q Consensus       355 ~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  397 (471)
                      +-..  .+.........+.+  ++++++.||.+     +.|.+||..+.+
T Consensus       467 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        467 KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            4221  11111111122222  66777777654     457778776653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.60  E-value=0.56  Score=46.24  Aligned_cols=150  Identities=16%  Similarity=0.222  Sum_probs=89.3

Q ss_pred             cCeEEEEEecCCCEEE-EEe--CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        153 RPISYCSFSPDSQHVA-TAS--WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~-tg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .||..++|. ||+.++ |.-  .+|.+++=|   .+.+..|    ..|..+.|.|........ |+..-....|.||.+.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~pa-LLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPA-LLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCc-eEEEeccceEEEEEec
Confidence            478899997 566554 332  234443322   2334443    468999999987655544 4455567899999875


Q ss_pred             -----CCcceee----ecCCCCcceEEEEECCCCCEEEEEeCCCe-----EEeccccccccCCCCcceEEEEECCCCCEE
Q psy11350        230 -----KDTPLAN----LEGHEPFRVSRIKFHPSGRFLGTCCWDHS-----WRLDTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       230 -----~~~~~~~----~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-----~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                           +++.+..    +....+.-...+.|+|....+++-.....     ++.............+.|.|.+|.+||+.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence                 2232222    22222223457889999998877655544     222222222222335579999999999987


Q ss_pred             EEEec-CCeEEEEECCC
Q psy11350        296 GTCCW-DHSWRLWDLNQ  311 (471)
Q Consensus       296 ~~~~~-dg~i~iwd~~~  311 (471)
                      +++-. .=.-++||-..
T Consensus       171 VVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEeCCeEEEEEecCch
Confidence            76643 33467888543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.52  E-value=0.6  Score=42.32  Aligned_cols=218  Identities=14%  Similarity=0.144  Sum_probs=123.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCC------CC-ceEEEeec-----CCCCEEEEEEeeCCCC-------CCccEEE
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVP------EC-ELVQTFRG-----HDCNVGAIEFHPLPSE-------GAVCSLA  215 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~~~-------~~~~~l~  215 (471)
                      -+.|+|+|.+.+-++....+...+||..      .. .++-++..     .....+.+.|+.....       .....++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3678999998877777778999999986      11 22333331     1345778888754321       1122478


Q ss_pred             EEeCCCcEEEEeCCCCcc-----eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC
Q psy11350        216 SCAQDGSVKLWSLDKDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~  290 (471)
                      .++.||+|.-|...-+..     ...+.....                                     ..-...+++..
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-------------------------------------gavYkGLAi~~  147 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-------------------------------------GNVYKGLAVGP  147 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCC-------------------------------------cceeeeeEEee
Confidence            889999999998533211     001100000                                     11123344433


Q ss_pred             --CCCEEEEEe-cCCeEEEEECCCCcEEE--EeeCC-----CCC-----------eEEEEEeCCCCEEEEEeCCCeEEEE
Q psy11350        291 --SGRFLGTCC-WDHSWRLWDLNQGQEVL--HQEGH-----GKP-----------VYCMSFQGDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       291 --~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~-----~~~-----------v~~~~~s~d~~~l~t~~~dg~i~iw  349 (471)
                        .+.+|+.+. ..++|.+||-.-.+...  .+...     -.+           |+-..-.++++.=+.|..-|.|-+|
T Consensus       148 ~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvF  227 (336)
T TIGR03118       148 TGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVF  227 (336)
T ss_pred             cCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEE
Confidence              345555554 46788888854322110  01000     001           1111111222222334455789999


Q ss_pred             eCCCCeeEEEec--ccCcCEEEEEEcC------CCCEEEEEeCCCcEEEEECCCccchheecccCCCcc
Q psy11350        350 DLRTGRCIMFLE--GHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSI  410 (471)
Q Consensus       350 d~~~~~~~~~~~--~h~~~v~~~~~sp------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  410 (471)
                      |+ .|+.++.+.  +.-...+.|+..|      .|.+|+---.||+|..+|..+++.+-.+......++
T Consensus       228 d~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi  295 (336)
T TIGR03118       228 TL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV  295 (336)
T ss_pred             cC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence            96 577777664  3334567788766      466777766799999999999998877776555444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4499|consensus

Probab=96.47  E-value=0.14  Score=44.31  Aligned_cols=140  Identities=9%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             EEEEEecCCCEEEEEeC----------CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        156 SYCSFSPDSQHVATASW----------SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      +.-..+|+|++. .|..          .|.++.|-..  ..+..+...-.--+.++|..+...    +.++-+.+-+|.-
T Consensus       112 NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~----fY~iDsln~~V~a  184 (310)
T KOG4499|consen  112 NDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKK----FYYIDSLNYEVDA  184 (310)
T ss_pred             ccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcE----EEEEccCceEEee
Confidence            334558999984 3331          2445555432  112222222223357888866553    5667777888888


Q ss_pred             Ee--CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        226 WS--LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       226 wd--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      ||  ..+|.....-      .+..+                    ... ..+...   ..-.++...+|++.++.-+.++
T Consensus       185 ~dyd~~tG~~snr~------~i~dl--------------------rk~-~~~e~~---~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRK------VIFDL--------------------RKS-QPFESL---EPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             eecCCCcccccCcc------eeEEe--------------------ccC-CCcCCC---CCCcceEccCCcEEEEEecCcE
Confidence            88  5555422110      00000                    000 001111   1234555668888888888999


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeC
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQG  332 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  332 (471)
                      |..+|..+|+.+..+.-....|++++|--
T Consensus       235 V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  235 VQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            99999999999999988899999999964

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.40  E-value=0.67  Score=41.48  Aligned_cols=171  Identities=12%  Similarity=0.106  Sum_probs=103.2

Q ss_pred             ceEEEeecC-CCCEEEEEEeeCCCCCCccEEEEEeCCC--cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEe
Q psy11350        185 ELVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASCAQDG--SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC  261 (471)
Q Consensus       185 ~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~  261 (471)
                      +.+.++... ..-.-.+.|..++.     ++-+.+.-|  .|+.+|+.+++...........             |    
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~-----LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-------------F----   91 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGT-----LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-------------F----   91 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTE-----EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------------------
T ss_pred             EEEEECCCCCcccCccEEecCCCE-----EEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-------------c----
Confidence            344454322 23345688877775     677777766  6889999999876655433321             0    


Q ss_pred             CCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe
Q psy11350        262 WDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG  341 (471)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~  341 (471)
                                           --.++.. +++.....-.++...+||..+.+.+.++.- .+.=..++  .|+..|+.+.
T Consensus        92 ---------------------gEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SD  146 (264)
T PF05096_consen   92 ---------------------GEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSD  146 (264)
T ss_dssp             ---------------------EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-
T ss_pred             ---------------------ceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEEC
Confidence                                 1112222 122233333478899999999988877753 34455666  4677777777


Q ss_pred             CCCeEEEEeCCCCeeEEEecccC-----cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        342 LDAFGRVWDLRTGRCIMFLEGHL-----KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       342 ~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ....++++|..+.+....+....     ..++-+.|. +|...|=.=....|...|..+|+.+.++.
T Consensus       147 GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  147 GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred             CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence            78889999998887766655322     246667776 67766666667778888999998877653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444|consensus

Probab=96.38  E-value=0.016  Score=49.69  Aligned_cols=64  Identities=9%  Similarity=0.088  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCC-CCeEEEEEeCCCCEEEEE--eCCCeEEEEeCC
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG-KPVYCMSFQGDGSVVATG--GLDAFGRVWDLR  352 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~t~--~~dg~i~iwd~~  352 (471)
                      -.++.+.+++..+|.|+.|++...+.+.....|. .++..+..+..+..++.+  |.|..++.|++.
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            3456688899999999999999888777777776 455544445455555555  566666666654

>PRK10115 protease 2; Provisional

Probab=96.25  E-value=0.84  Score=47.82  Aligned_cols=110  Identities=9%  Similarity=0.013  Sum_probs=65.9

Q ss_pred             ceEEEEECCCCCEEEEEec-----CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEEe
Q psy11350        282 RVSRIKFHPSGRFLGTCCW-----DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD------AFGRVWD  350 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d------g~i~iwd  350 (471)
                      .+..+.++|+|++|+.+..     ...|++.|+.++..+........  ..++|++|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            3666777888887775532     23589999988864322221211  469999998866655432      3688888


Q ss_pred             CCCC--eeEEEecccCcCEE-EEEEcCCCCEEEEEeC---CCcEEEEEC
Q psy11350        351 LRTG--RCIMFLEGHLKSVF-SVDFSPDGYHLATGSE---DNAVKIWDL  393 (471)
Q Consensus       351 ~~~~--~~~~~~~~h~~~v~-~~~~sp~~~~l~s~s~---dg~i~iwd~  393 (471)
                      +.++  +-...+........ .+..+.++++++..+.   ++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8887  33333333223333 3333447777655443   356888885

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.24  E-value=0.019  Score=36.31  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      ...|..++|+|...+||.|+.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            356999999999999999999999999999 55543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.19  E-value=0.93  Score=41.01  Aligned_cols=147  Identities=13%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             CeEEEEEecCCCEEEEEe---CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe-CC
Q psy11350        154 PISYCSFSPDSQHVATAS---WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS-LD  229 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~  229 (471)
                      .+.+.+++++++.+|...   ....++++.... .....+.+  ..+....|.+++.     +.+....+...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~-----~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGW-----VWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCC-----EEEEEcCCCceEEEEecC
Confidence            688899999999887655   334555555332 22222232  3678889999865     455545555556663 22


Q ss_pred             CCccee-eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe---cCCeEE
Q psy11350        230 KDTPLA-NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---WDHSWR  305 (471)
Q Consensus       230 ~~~~~~-~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~  305 (471)
                      ++.... .......                                     ...|..+.++|||..++...   .++.|.
T Consensus        97 ~g~~~~~~v~~~~~-------------------------------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~  139 (253)
T PF10647_consen   97 SGTGEPVEVDWPGL-------------------------------------RGRITALRVSPDGTRVAVVVEDGGGGRVY  139 (253)
T ss_pred             CCcceeEEeccccc-------------------------------------CCceEEEEECCCCcEEEEEEecCCCCeEE
Confidence            332211 1111110                                     01466666666666555444   234455


Q ss_pred             EEECC---CC------cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe
Q psy11350        306 LWDLN---QG------QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAF  345 (471)
Q Consensus       306 iwd~~---~~------~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~  345 (471)
                      +--+.   .+      ..+.........+.+++|.+++.+++.+...+.
T Consensus       140 va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  140 VAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             EEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            44332   11      112222234568899999999988777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.12  E-value=0.076  Score=51.12  Aligned_cols=99  Identities=15%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             ccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeC--CCC--------
Q psy11350        139 LTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL--PSE--------  208 (471)
Q Consensus       139 ~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~--------  208 (471)
                      ..++.....+....+.+.+++.+|++++.|+...-|.|.++|+.++..++.++|..+.  .+.|...  ...        
T Consensus       294 ~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~  371 (415)
T PF14655_consen  294 AAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNS  371 (415)
T ss_pred             CcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccc
Confidence            3456677778888899999999999998888877899999999999999888876543  2333221  111        


Q ss_pred             ------CCccEEEEEeCCCcEEEEeCCCCcceeeecC
Q psy11350        209 ------GAVCSLASCAQDGSVKLWSLDKDTPLANLEG  239 (471)
Q Consensus       209 ------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  239 (471)
                            ....+++-.-.-|.|.||.+++|..+..+..
T Consensus       372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  372 PKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence                  1222445567789999999999877666554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.11  E-value=1.3  Score=41.94  Aligned_cols=233  Identities=17%  Similarity=0.152  Sum_probs=118.9

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---EEEe----ecCCCCEEEEEEeeCCCCCCccEEEEEeC-----C-
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECEL---VQTF----RGHDCNVGAIEFHPLPSEGAVCSLASCAQ-----D-  220 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~----~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-----d-  220 (471)
                      ..++|+|.|||++|++ ...|.|++++ .++..   +..+    .........++++|+-......+++....     . 
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999987665 5599999999 44443   2222    13456788999999633222323333321     1 


Q ss_pred             -CcEEEEeCCCC-------cce-eeecC--CCCcceEEEEECCCCCEEEEEeCCCe--------------EEeccccc--
Q psy11350        221 -GSVKLWSLDKD-------TPL-ANLEG--HEPFRVSRIKFHPSGRFLGTCCWDHS--------------WRLDTPLA--  273 (471)
Q Consensus       221 -g~i~iwd~~~~-------~~~-~~~~~--~~~~~v~~~~~s~~~~~i~~~~~d~~--------------~~~~~~~~--  273 (471)
                       ..|.-|....+       +.+ .....  ...-....+.|.|||.++++.+..+.              +++...-.  
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23444444333       111 11222  12225677999999977666654432              22211000  


Q ss_pred             -------------cccCCCCcceEEEEECCC-CCEEEEE-ecCCeEEEEECCCC--------------------------
Q psy11350        274 -------------NLEGHEPFRVSRIKFHPS-GRFLGTC-CWDHSWRLWDLNQG--------------------------  312 (471)
Q Consensus       274 -------------~~~~~~~~~v~~l~~~~~-~~~l~~~-~~dg~i~iwd~~~~--------------------------  312 (471)
                                   .+....-.....++|+|. |.++++= +.++.=.|.-+..+                          
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                         000000113567999998 5544432 22222112111111                          


Q ss_pred             ---cEEEEeeCCCCCeEEEEEeC-------CCCEEEEEeCCCeEEEEeCCCCeeEE---E-ecccCcCEEEEEEcCCCCE
Q psy11350        313 ---QEVLHQEGHGKPVYCMSFQG-------DGSVVATGGLDAFGRVWDLRTGRCIM---F-LEGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       313 ---~~~~~~~~~~~~v~~~~~s~-------d~~~l~t~~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~~~~sp~~~~  378 (471)
                         .++..+. +...+..+.|-+       .|.++++.-..+.|....+..+..+.   . +......+..+++.|||.+
T Consensus       241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred             CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence               1222233 334566677753       45566666667788888876553322   2 2334458999999999998


Q ss_pred             EEEEeCCCcEE
Q psy11350        379 LATGSEDNAVK  389 (471)
Q Consensus       379 l~s~s~dg~i~  389 (471)
                      .++-..+|.|.
T Consensus       320 yv~~d~~G~iy  330 (331)
T PF07995_consen  320 YVSDDSDGKIY  330 (331)
T ss_dssp             EEEE-TTTTEE
T ss_pred             EEEECCCCeEe
Confidence            88888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02790 Kelch-like protein; Provisional

Probab=95.86  E-value=0.68  Score=46.37  Aligned_cols=99  Identities=8%  Similarity=-0.098  Sum_probs=48.0

Q ss_pred             CCCEEEEEecCC---eEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeccc
Q psy11350        291 SGRFLGTCCWDH---SWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI--MFLEGH  363 (471)
Q Consensus       291 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~--~~~~~h  363 (471)
                      +|+..+.|+.++   .+..||.++.+-...  ........ +++ .-++++.+.|+   .+.+||..+.+-.  ..+...
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~  436 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP  436 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence            455555655443   466788766532221  11011111 222 23566666664   4678888765322  222211


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCc
Q psy11350        364 LKSVFSVDFSPDGYHLATGSED-----NAVKIWDLRKR  396 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~  396 (471)
                      ......+.+  +|++.+.||.+     .++..||..++
T Consensus       437 r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        437 RDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence            122222223  67788888754     24556666544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.86  E-value=1.8  Score=41.54  Aligned_cols=182  Identities=15%  Similarity=0.155  Sum_probs=80.9

Q ss_pred             ecCCCEEEEEe------CCCcEEEEeCCCCceEEEeecC---CCCEEEEEEeeCCCCCCccEEEEEeC------------
Q psy11350        161 SPDSQHVATAS------WSGLCKLWTVPECELVQTFRGH---DCNVGAIEFHPLPSEGAVCSLASCAQ------------  219 (471)
Q Consensus       161 s~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~l~s~~~------------  219 (471)
                      -|+|..++++-      .-|-+.+.|-++.+........   ...-..+-|.|..+     .++|...            
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n-----vMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN-----VMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT-----EEEE-B---HHHHTT---T
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC-----EEEEeccCChhhcccCCCh
Confidence            36787777652      2356888888877777666532   22335677777665     5666543            


Q ss_pred             --------CCcEEEEeCCCCcceeeecCCCCc-ceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC
Q psy11350        220 --------DGSVKLWSLDKDTPLANLEGHEPF-RVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       220 --------dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~  290 (471)
                              ..++.+||+.+.+.++++...... ....+.|..                                    .|
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH------------------------------------~P  256 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH------------------------------------DP  256 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S------------------------------------ST
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecC------------------------------------CC
Confidence                    357999999999988888765431 122233221                                    12


Q ss_pred             CCCE-EEEEecCCeEEEEEC-CCCc----EEEEeeC-----C------------CCCeEEEEEeCCCCEEEEEe-CCCeE
Q psy11350        291 SGRF-LGTCCWDHSWRLWDL-NQGQ----EVLHQEG-----H------------GKPVYCMSFQGDGSVVATGG-LDAFG  346 (471)
Q Consensus       291 ~~~~-l~~~~~dg~i~iwd~-~~~~----~~~~~~~-----~------------~~~v~~~~~s~d~~~l~t~~-~dg~i  346 (471)
                      +..+ |+.+-..++|..|-- ..++    .+..+..     -            ..-|+.|.+|.|.++|..++ .+|.|
T Consensus       257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv  336 (461)
T PF05694_consen  257 DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV  336 (461)
T ss_dssp             T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE
T ss_pred             CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE
Confidence            2222 222222333333322 2221    1222211     0            23478999999999888766 68999


Q ss_pred             EEEeCCCC---eeEEEec-c---------------cCcCEEEEEEcCCCCEEEEEe
Q psy11350        347 RVWDLRTG---RCIMFLE-G---------------HLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       347 ~iwd~~~~---~~~~~~~-~---------------h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      +.||+...   +.+..+. +               -.+...-+..|-||+.|+..+
T Consensus       337 rqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  337 RQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99999764   3333221 1               012345677777887776553

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.84  E-value=1.3  Score=39.88  Aligned_cols=166  Identities=10%  Similarity=0.107  Sum_probs=98.9

Q ss_pred             ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc
Q psy11350        191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT  270 (471)
Q Consensus       191 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~  270 (471)
                      .+-...+.++.|+|+..     .|++......-.||=..+|+.+.+++...-.                           
T Consensus        82 ~g~~~nvS~LTynp~~r-----tLFav~n~p~~iVElt~~GdlirtiPL~g~~---------------------------  129 (316)
T COG3204          82 LGETANVSSLTYNPDTR-----TLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------------------------  129 (316)
T ss_pred             ccccccccceeeCCCcc-----eEEEecCCCceEEEEecCCceEEEecccccC---------------------------
Confidence            34456699999999998     4666666666666665678877776543321                           


Q ss_pred             ccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE-------e--eCC-CCCeEEEEEeCCCCEEEEE
Q psy11350        271 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH-------Q--EGH-GKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       271 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~--~~~-~~~v~~~~~s~d~~~l~t~  340 (471)
                                 ..-.+.+..++++.++--.++.+.++.+.....+..       +  ..+ +...-.++|+|....|..+
T Consensus       130 -----------DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a  198 (316)
T COG3204         130 -----------DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA  198 (316)
T ss_pred             -----------ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE
Confidence                       233455555666666666666666665554422111       1  122 5667889999988877777


Q ss_pred             eCCCeEEEEeCCCCe-eE--EEeccc-------CcCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCccchh
Q psy11350        341 GLDAFGRVWDLRTGR-CI--MFLEGH-------LKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       341 ~~dg~i~iwd~~~~~-~~--~~~~~h-------~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      -.-.=+.||.+.-+. .+  .....+       -..|.++.|.+. +..|+-+..++.+.-.|.. |.++.
T Consensus       199 KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~  268 (316)
T COG3204         199 KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIE  268 (316)
T ss_pred             EccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeee
Confidence            766666666654222 11  111111       134677888874 5556666666666666654 44443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.69  E-value=1.7  Score=40.06  Aligned_cols=208  Identities=12%  Similarity=0.088  Sum_probs=110.0

Q ss_pred             eEEEEEecCCCEEE--EEeC----------CCcEEEEeCCCCceEEEeec------CCCCEEEEEEeeCCCCC-CccEEE
Q psy11350        155 ISYCSFSPDSQHVA--TASW----------SGLCKLWTVPECELVQTFRG------HDCNVGAIEFHPLPSEG-AVCSLA  215 (471)
Q Consensus       155 V~~~~~s~~~~~l~--tg~~----------dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~-~~~~l~  215 (471)
                      |..+...+++++=+  +|..          .-.|.+||+.+.+.++++.-      ..+.+..+.+....... .....+
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            55666666655422  2321          12789999999999887763      24567788887743311 111345


Q ss_pred             EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC---CC
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP---SG  292 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~  292 (471)
                      +-+..+-|.|+|+.+++.-+....+....       |+...+..+         ..  .+..  ...+..++.+|   ++
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~-------p~~~~~~i~---------g~--~~~~--~dg~~gial~~~~~d~  142 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPD-------PDAGPFTIG---------GE--SFQW--PDGIFGIALSPISPDG  142 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS--------SSEEEEET---------TE--EEEE--TTSEEEEEE-TTSTTS
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCccee-------ccccceecc---------Cc--eEec--CCCccccccCCCCCCc
Confidence            55556789999999987665554432211       111111110         00  0000  12377777766   66


Q ss_pred             CEEEEEecCC-eEEEEEC---CCCc---------EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC----e
Q psy11350        293 RFLGTCCWDH-SWRLWDL---NQGQ---------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG----R  355 (471)
Q Consensus       293 ~~l~~~~~dg-~i~iwd~---~~~~---------~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~----~  355 (471)
                      +.|+.....+ .++-...   +...         .+..+-........++++++|.++++--..+.|..|+....    .
T Consensus       143 r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~  222 (287)
T PF03022_consen  143 RWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPEN  222 (287)
T ss_dssp             -EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCC
T ss_pred             cEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccc
Confidence            7777766544 2332221   1111         11222111245567889999999999889999999998762    1


Q ss_pred             -eEEEeccc-CcCEEEEEEcC--CCCEEEEE
Q psy11350        356 -CIMFLEGH-LKSVFSVDFSP--DGYHLATG  382 (471)
Q Consensus       356 -~~~~~~~h-~~~v~~~~~sp--~~~~l~s~  382 (471)
                       .+...... -..+.++.+.+  +|.+.+.+
T Consensus       223 ~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  223 FEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             hheeEEcCceeeccceeeeccccCceEEEEE
Confidence             11111122 35688999988  76655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.65  E-value=1.2  Score=42.27  Aligned_cols=147  Identities=14%  Similarity=0.120  Sum_probs=81.5

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEE-EeCCCCceEE-EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKL-WTVPECELVQ-TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~i-wd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      ...+.++.+.|++.+++++. .|.+.. ++ ..++.-. ....-...++++.+.+++.      ++..+..|.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~------~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGN------LWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCC------EEEEecCCEEEEccCC
Confidence            35688899999987777666 565543 22 2222222 2223346788999999886      4444566776543334


Q ss_pred             CCcceeeecCC---CCcceEEEEECCCCCEEEEEeCCCeEEe-cccccccc-----CCCCcceEEEEECCCCCEEEEEec
Q psy11350        230 KDTPLANLEGH---EPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPLANLE-----GHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       230 ~~~~~~~~~~~---~~~~v~~~~~s~~~~~i~~~~~d~~~~~-~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      .+..-.....+   ....+..+.+.+++..++++. +|.+.. ...-....     ...+.....+.|..+++.++ .+.
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~  321 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ  321 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence            44322222211   223578899999887665554 444322 11111111     11123577788876666655 445


Q ss_pred             CCeEEEEE
Q psy11350        301 DHSWRLWD  308 (471)
Q Consensus       301 dg~i~iwd  308 (471)
                      .|.|-.|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            78777665

>PHA02713 hypothetical protein; Provisional

Probab=95.63  E-value=1.3  Score=45.30  Aligned_cols=101  Identities=5%  Similarity=-0.111  Sum_probs=50.3

Q ss_pred             CCCEEEEEecCC-----eEEEEECCCCcEEE--EeeCCCCCeEEEEEeCCCCEEEEEeCCC-------------------
Q psy11350        291 SGRFLGTCCWDH-----SWRLWDLNQGQEVL--HQEGHGKPVYCMSFQGDGSVVATGGLDA-------------------  344 (471)
Q Consensus       291 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~t~~~dg-------------------  344 (471)
                      +|+..+.|+.++     ++..||..+.+-..  .+.........+.  -+|.+.+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            455556666543     47788877653221  1111111111122  2677777777542                   


Q ss_pred             ----eEEEEeCCCCee--EEEecccCcCEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Q psy11350        345 ----FGRVWDLRTGRC--IMFLEGHLKSVFSVDFSPDGYHLATGSEDN------AVKIWDLRK  395 (471)
Q Consensus       345 ----~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg------~i~iwd~~~  395 (471)
                          .+..||..+.+-  +..+.........+.+  ++++.+.||.++      .+..||..+
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCC
Confidence                477788776532  2222111111112222  567777777542      467788886

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.62  E-value=1.8  Score=39.69  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=71.6

Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--------------eCCCCCeEEEE--EeCCCCEEEEEeCCCe
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ--------------EGHGKPVYCMS--FQGDGSVVATGGLDAF  345 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~s~d~~~l~t~~~dg~  345 (471)
                      .|..+...|+-+.|++-+ |+.++++++.........              ......+...+  -...+...++......
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            388888888777766665 599999998765433311              11223344444  1123444444445668


Q ss_pred             EEEEeCCCC-----eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhe
Q psy11350        346 GRVWDLRTG-----RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       346 i~iwd~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      |.+|.....     +....+. -...+.+++|.  +..|+.|..+ ...+.|+.++.....
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l  172 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSEL  172 (275)
T ss_pred             EEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEE
Confidence            888877543     3445554 34789999998  5677777655 477889997766443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.60  E-value=0.5  Score=49.23  Aligned_cols=94  Identities=20%  Similarity=0.332  Sum_probs=56.9

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC-cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD-TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL  272 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~  272 (471)
                      ...|..|.++|++.     +++..|..| |.|-.+... .....+..... .+.|-.+.-+..++               
T Consensus        84 ~f~v~~i~~n~~g~-----~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~-~i~Crt~~v~~~~~---------------  141 (717)
T PF10168_consen   84 LFEVHQISLNPTGS-----LLALVGPRG-VVVLELPRRWGKNGEFEDGKK-EINCRTVPVDERFF---------------  141 (717)
T ss_pred             ceeEEEEEECCCCC-----EEEEEcCCc-EEEEEeccccCccccccCCCc-ceeEEEEEechhhc---------------
Confidence            34688899999998     566666644 555555321 11222322222 33333333222222               


Q ss_pred             ccccCCCCcceEEEEECCC---CCEEEEEecCCeEEEEECCCC
Q psy11350        273 ANLEGHEPFRVSRIKFHPS---GRFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       273 ~~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~  312 (471)
                         ..+....|..+.|+|.   +.+|++=+.|+++++||+...
T Consensus       142 ---~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 ---TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ---cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence               1222447999999995   579999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.57  E-value=0.6  Score=46.04  Aligned_cols=148  Identities=12%  Similarity=0.146  Sum_probs=85.4

Q ss_pred             ceEEEEECCCCCEEEEEe--CCCeEEeccccccccCCCCcceEEEEECCC----CCEEEEEecCCeEEEEECC-----CC
Q psy11350        244 RVSRIKFHPSGRFLGTCC--WDHSWRLDTPLANLEGHEPFRVSRIKFHPS----GRFLGTCCWDHSWRLWDLN-----QG  312 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~--~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~dg~i~iwd~~-----~~  312 (471)
                      ++..++|....+.+++.-  .+|...+.....  .+... .|.++.|.|-    ...|++......|.+|-+.     +.
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds~v--iGqFE-hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~   97 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKV--IGQFE-HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN   97 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccccCCccE--eeccc-eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence            566677765555544433  222233222111  11111 4899999984    3356666668889999875     23


Q ss_pred             cEEEEeeCC---CCCe--EEEEEeCCCCEEEEEeCCCeEEEEeCCCC--eeEEEecccCcCEEEEEEcCCCCEEEEEe-C
Q psy11350        313 QEVLHQEGH---GKPV--YCMSFQGDGSVVATGGLDAFGRVWDLRTG--RCIMFLEGHLKSVFSVDFSPDGYHLATGS-E  384 (471)
Q Consensus       313 ~~~~~~~~~---~~~v--~~~~~s~d~~~l~t~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~  384 (471)
                      +.+.....+   .-+|  ..+.|+|....|++-.....-.+++++..  +....+. ..+.|.|.+|.+||+.|+.+- .
T Consensus        98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGS  176 (671)
T PF15390_consen   98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGS  176 (671)
T ss_pred             cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCC
Confidence            333332221   1122  35789998887777665555456666543  2223343 457899999999998877653 3


Q ss_pred             CCcEEEEECCC
Q psy11350        385 DNAVKIWDLRK  395 (471)
Q Consensus       385 dg~i~iwd~~~  395 (471)
                      .=.-+|||-..
T Consensus       177 sLHSyiWd~~q  187 (671)
T PF15390_consen  177 SLHSYIWDSAQ  187 (671)
T ss_pred             eEEEEEecCch
Confidence            33467898544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.50  E-value=1.5  Score=46.25  Aligned_cols=186  Identities=13%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEE-------------EEEEeeC--CCCCCccEEEEEeC--------
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVG-------------AIEFHPL--PSEGAVCSLASCAQ--------  219 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-------------~l~~~~~--~~~~~~~~l~s~~~--------  219 (471)
                      .+..|+.++.|+.|.-.|..+|+.+..+.. .+.|.             .+.-.|.  +.     .++.|+.        
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-----~VIvG~~v~d~~~~~  332 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-----TVVIGGRVADNYSTD  332 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC-----EEEEEeccccccccc
Confidence            345888898999999999999999877642 22221             0011110  11     3555543        


Q ss_pred             --CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEec---cccccccCCCCcceEEEEECCCCCE
Q psy11350        220 --DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD---TPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       220 --dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                        +|.|+-+|..+|+.+..+....... ...  .+.+.....+ ..+.|...   .....+.-....  .+..+....+.
T Consensus       333 ~~~G~I~A~Da~TGkl~W~~~~g~p~~-~~~--~~~g~~~~~g-g~n~W~~~s~D~~~glvy~ptGn--~~pd~~g~~r~  406 (764)
T TIGR03074       333 EPSGVIRAFDVNTGALVWAWDPGNPDP-TAP--PAPGETYTRN-TPNSWSVASYDEKLGLVYLPMGN--QTPDQWGGDRT  406 (764)
T ss_pred             CCCcEEEEEECCCCcEeeEEecCCCCc-ccC--CCCCCEeccC-CCCccCceEEcCCCCeEEEeCCC--ccccccCCccc
Confidence              6889999999999888776422100 000  0122211111 11111110   000000000000  00000000000


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCe---------EEEEEeC-CCC---EEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPV---------YCMSFQG-DGS---VVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~s~-d~~---~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      .......+.|.-.|.++|+..-.++.....+         .-+.+.. +|+   .++.++.+|.++++|.++|+.+...
T Consensus       407 ~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       407 PADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            1111235668888999998877665411111         1122332 553   7899999999999999999877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.37  E-value=0.79  Score=46.56  Aligned_cols=109  Identities=14%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             eEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-CCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCC-------
Q psy11350        283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQG--DGSVVATGGLDAFGRVWDLR-------  352 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~-------  352 (471)
                      ++-+.-+.-++..++.+....+.|||.+.+....... ...+.|.+++|..  +|+.+++.|..+.|.+|--.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3344444444444444445679999999886443322 4578899999964  89999999999999998531       


Q ss_pred             --CCeeEEEe--cccC-cCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        353 --TGRCIMFL--EGHL-KSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       353 --~~~~~~~~--~~h~-~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                        +..++..+  ..|+ .+|.+..|.++|..++.+|  +.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              11233332  3344 5799999999987666553  46777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630|consensus

Probab=95.28  E-value=0.24  Score=52.32  Aligned_cols=114  Identities=12%  Similarity=-0.083  Sum_probs=73.7

Q ss_pred             CcceEEEEECCCCCEEEEE--ecCCeEEEEECCCCcEEE-----EeeC------CCCCeEEEEEeCCC-CEEEEEeCCCe
Q psy11350        280 PFRVSRIKFHPSGRFLGTC--CWDHSWRLWDLNQGQEVL-----HQEG------HGKPVYCMSFQGDG-SVVATGGLDAF  345 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~-----~~~~------~~~~v~~~~~s~d~-~~l~t~~~dg~  345 (471)
                      ...+..+...+|+...++.  +.+-.|..||+++...-.     -+..      ......++.|+|.- ...+++..|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            4456677777776654443  334478999987642211     1111      12334577888842 34566778999


Q ss_pred             EEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        346 GRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       346 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      |++..+........--......++++|+|.|+.++.|-..|++.-|..
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence            988876543222221224567899999999999999999999987764

>KOG3630|consensus

Probab=95.24  E-value=0.11  Score=54.71  Aligned_cols=140  Identities=14%  Similarity=0.079  Sum_probs=88.5

Q ss_pred             CcCeEEEEEecCCCEEEEE--eCCCcEEEEeCCCCceE-----EEeec------CCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        152 TRPISYCSFSPDSQHVATA--SWSGLCKLWTVPECELV-----QTFRG------HDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg--~~dg~i~iwd~~~~~~~-----~~~~~------h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      .-+|..+...+|++..++.  +.+-.|..||+.+...-     .-|..      ......++.|+|.-..    ..+.+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~----n~av~l  175 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL----NSAVDL  175 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc----hhhhhc
Confidence            4466677777887765543  33447889998653221     11111      1234568889987653    467788


Q ss_pred             CCCcEEEEeCCCCcc-eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-------cccCCCCcceEEEEECC
Q psy11350        219 QDGSVKLWSLDKDTP-LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-------NLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-------~~~~~~~~~v~~l~~~~  290 (471)
                      .|+.|++..+..... +..+.  .....++++|+|.|+.+++|-..|++.-..+..       .......+.|.+|+|-.
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence            899999987643322 22222  233789999999999999999999854332211       11222246799999987


Q ss_pred             CCCEEEE
Q psy11350        291 SGRFLGT  297 (471)
Q Consensus       291 ~~~~l~~  297 (471)
                      ...++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            6666554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=1.3  Score=37.85  Aligned_cols=173  Identities=12%  Similarity=0.052  Sum_probs=89.0

Q ss_pred             CCCEEEEEeC--CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCC
Q psy11350        163 DSQHVATASW--SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH  240 (471)
Q Consensus       163 ~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  240 (471)
                      +|.++.+.+.  ...|++||+.+|+.+.+-.-....+..=-...-+..    +..-.-.+|.-..+|.++-+++..+.-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~----~y~LTw~egvaf~~d~~t~~~lg~~~y~  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDY----FYQLTWKEGVAFKYDADTLEELGRFSYE  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccce----EEEEEeccceeEEEChHHhhhhcccccC
Confidence            4555555553  347999999999887664422112221111111221    2333445677778888777666655432


Q ss_pred             CCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-
Q psy11350        241 EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE-  319 (471)
Q Consensus       241 ~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-  319 (471)
                      ..                                        =+.++  .++..|+.++...+++.-|.++.....++. 
T Consensus       131 Ge----------------------------------------GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~V  168 (262)
T COG3823         131 GE----------------------------------------GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQV  168 (262)
T ss_pred             Cc----------------------------------------ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEE
Confidence            21                                        12222  234445555555556666655433222211 


Q ss_pred             -CCCC---CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec------------ccCcCEEEEEEcCCC-CEEEEE
Q psy11350        320 -GHGK---PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE------------GHLKSVFSVDFSPDG-YHLATG  382 (471)
Q Consensus       320 -~~~~---~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~sp~~-~~l~s~  382 (471)
                       ....   .++-+.|- ||.+.+-.=.+..|...|..+|+.+..+.            .|..-.+.+++.|++ +++++|
T Consensus       169 T~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         169 TDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence             1111   22333343 45555544445556666666666554432            244567889999976 555555

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.16  E-value=0.46  Score=48.20  Aligned_cols=107  Identities=12%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEE--CCCCCEEEEEeCCCeEEec----
Q psy11350        196 NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF--HPSGRFLGTCCWDHSWRLD----  269 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~i~~~~~d~~~~~~----  269 (471)
                      ...-+.-+..+.     ..+..+....+.|||...+.....-.-.....|.++.|  .|+|+.+++.+..+.+.+.    
T Consensus        31 ~~~li~gss~~k-----~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   31 NPSLISGSSIKK-----IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CcceEeecccCc-----EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            344444444443     22233344579999998887544433333448899988  5788988888888775552    


Q ss_pred             ----------ccccc--ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEEC
Q psy11350        270 ----------TPLAN--LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDL  309 (471)
Q Consensus       270 ----------~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  309 (471)
                                .+...  +..+.+.+|.+..|.++|..++.+  ++.+.|+|-
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence                      12221  234445578999999998765544  466888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.14  E-value=2.3  Score=38.04  Aligned_cols=236  Identities=13%  Similarity=-0.003  Sum_probs=149.6

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .-..++-.|||..-+++...|.|--.|..+|+....--+....-..|..-|++.     .-++-+.. -|.-.|-++.+.
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-----~Witd~~~-aI~R~dpkt~ev  136 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-----AWITDTGL-AIGRLDPKTLEV  136 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-----eeEecCcc-eeEEecCcccce
Confidence            445667789999889998888888889889887765545455556777777776     23332222 344445444332


Q ss_pred             eeeec---CCCCcceEEEEECCCCCEEEEEeCCCeEEe---ccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEE
Q psy11350        234 LANLE---GHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW  307 (471)
Q Consensus       234 ~~~~~---~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw  307 (471)
                       ..|.   .+.........|.+.|+.-+++...-.-++   ...+..+........+.|+..|+|..-++.-.++.|-..
T Consensus       137 -t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari  215 (353)
T COG4257         137 -TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI  215 (353)
T ss_pred             -EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence             2222   233447888999999999888864322222   122333444445567889999999988888888888888


Q ss_pred             ECCCCcEEEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe-eEEEecccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        308 DLNQGQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       308 d~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      |..++..-..-  .........+--+|.|..-++....+.+..+|-.+.. .-..+.+....-.++.....++.-.+--.
T Consensus       216 dp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~  295 (353)
T COG4257         216 DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD  295 (353)
T ss_pred             ccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccc
Confidence            88776322111  1212334455567788888887777888888865443 22344555556677777666666665555


Q ss_pred             CCcEEEEECCCc
Q psy11350        385 DNAVKIWDLRKR  396 (471)
Q Consensus       385 dg~i~iwd~~~~  396 (471)
                      -|.|.-+|-++.
T Consensus       296 agai~rfdpeta  307 (353)
T COG4257         296 AGAIGRFDPETA  307 (353)
T ss_pred             cCceeecCcccc
Confidence            566666666544

>KOG1916|consensus

Probab=94.97  E-value=0.037  Score=56.55  Aligned_cols=110  Identities=18%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEE-----------EeCCCCEEEEEeCCCeEEEEeC-----C
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS-----------FQGDGSVVATGGLDAFGRVWDL-----R  352 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-----------~s~d~~~l~t~~~dg~i~iwd~-----~  352 (471)
                      -++..++.++..+++|++....+... ..+.+|...+..++           .||||..+++.+.||.++.|.+     .
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~  270 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI  270 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence            33667888888889988877655322 33344766655443           5899999999999999887754     3


Q ss_pred             CCeeEEEecccCc-CEEEEEEcCC-------C--CEEEEEeCC-CcEEEEECCCccch
Q psy11350        353 TGRCIMFLEGHLK-SVFSVDFSPD-------G--YHLATGSED-NAVKIWDLRKRRLL  399 (471)
Q Consensus       353 ~~~~~~~~~~h~~-~v~~~~~sp~-------~--~~l~s~s~d-g~i~iwd~~~~~~~  399 (471)
                      .-.|+...+.|.+ +-.|.-|+.+       +  .+++++++- .-+++|.....+|+
T Consensus       271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3456667777773 3333324332       2  234555543 45999998887776

>KOG1897|consensus

Probab=94.93  E-value=6  Score=41.80  Aligned_cols=190  Identities=14%  Similarity=0.181  Sum_probs=112.0

Q ss_pred             EEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--------------EEec--cccccccC
Q psy11350        214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--------------WRLD--TPLANLEG  277 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--------------~~~~--~~~~~~~~  277 (471)
                      ++++. .+.+++--++.-+.++.-...-......+++.+....+.+.+....              +++.  .....+..
T Consensus       687 l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  687 LASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             EEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence            55544 3567777665544333222223336677778775555555543322              1110  11111111


Q ss_pred             C------CCcceEEEEECCC-CCEEEEEec----------CCeEEEEECCCCcEEEEeeCC--CCCeEEEEEeCCCCEEE
Q psy11350        278 H------EPFRVSRIKFHPS-GRFLGTCCW----------DHSWRLWDLNQGQEVLHQEGH--GKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       278 ~------~~~~v~~l~~~~~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~  338 (471)
                      |      ....+.+..|..| +.++++|+.          .|.|.+|.+..++.+.....+  .+.+.++..- +|+++|
T Consensus       766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA  844 (1096)
T KOG1897|consen  766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA  844 (1096)
T ss_pred             ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE
Confidence            1      1123555668777 667777754          478888888774444443322  3445554432 566665


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CccchheecccCC
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR--KRRLLKWCTQLLP  407 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~  407 (471)
                      .  -...|++|++.+.+.++.-..|..++..+...-.|..++.|.-=+.+.+.-.+  .|.....-....|
T Consensus       845 ~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p  913 (1096)
T KOG1897|consen  845 G--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP  913 (1096)
T ss_pred             e--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc
Confidence            4  46689999999988887777888999999999999999999877777665544  4434443333344

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.88  E-value=0.66  Score=47.59  Aligned_cols=163  Identities=12%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceE------EEee----------------cCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        164 SQHVATASWSGLCKLWTVPECELV------QTFR----------------GHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~------~~~~----------------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.+|++|. .+.|.||++......      ..+.                .....|+.|....-+   ...+|+.|..||
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg---~~EVLl~c~DdG  124 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLG---GEEVLLLCTDDG  124 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccC---CeeEEEEEecCC
Confidence            67888877 889999997532211      1110                011224444333322   223789999999


Q ss_pred             cEEEEeCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEEC--CCCCEEEEE
Q psy11350        222 SVKLWSLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFH--PSGRFLGTC  298 (471)
Q Consensus       222 ~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~~  298 (471)
                      .|.+|.+++-- .+.............+..                   .+.  +....+..+++++++  ...++||++
T Consensus       125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i-------------------~P~--f~~~v~~SaWGLdIh~~~~~rlIAVS  183 (717)
T PF08728_consen  125 DVLAYYTETIIEAIERFSEDNDSGFSRLKI-------------------KPF--FHLRVGASAWGLDIHDYKKSRLIAVS  183 (717)
T ss_pred             eEEEEEHHHHHHHHHhhccccccccccccC-------------------CCC--eEeecCCceeEEEEEecCcceEEEEe
Confidence            99999864210 000000000000000000                   111  111223468999998  788899999


Q ss_pred             ecCCeEEEEECCCC--cEEE-EeeCCCCCeEEEEEeCCC---C---EEEEEeCCCeEEEEeC
Q psy11350        299 CWDHSWRLWDLNQG--QEVL-HQEGHGKPVYCMSFQGDG---S---VVATGGLDAFGRVWDL  351 (471)
Q Consensus       299 ~~dg~i~iwd~~~~--~~~~-~~~~~~~~v~~~~~s~d~---~---~l~t~~~dg~i~iwd~  351 (471)
                      ++...|.||-+...  +... .-..|...|.+|+|-++.   .   .|++++-.|.+.+|++
T Consensus       184 sNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  184 SNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888866542  1111 112356778899997743   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.55  E-value=4.8  Score=38.98  Aligned_cols=143  Identities=12%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ...+..++||.+++.+.....++-||-  |..  ...-......+.++.|.+++.      ++..+..|.+. |....+.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~------l~l~g~~G~l~-~S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGG------LWLLTRGGGLY-VSKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCC------EEEEeCCceEE-EecCCCC
Confidence            445567788888887774333334542  322  111223346788999998887      55555667654 4444443


Q ss_pred             -----ceeeecCC-CCcceEEEEECCCCCEEEEEeCCCeEEecccccccc-----CCCCcceEEEEECCCCCEEEEEecC
Q psy11350        233 -----PLANLEGH-EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE-----GHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       233 -----~~~~~~~~-~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                           ........ ....+.++.|.+++..+++|...-.+.....-....     .......+.+.|.++++.+++| .+
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~  390 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND  390 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence                 22222222 223588999998888776665433333321111111     1123457899998776656555 47


Q ss_pred             CeEEEE
Q psy11350        302 HSWRLW  307 (471)
Q Consensus       302 g~i~iw  307 (471)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            776554

>KOG4441|consensus

Probab=94.46  E-value=3  Score=42.71  Aligned_cols=181  Identities=14%  Similarity=0.064  Sum_probs=94.8

Q ss_pred             EEEEEeCC------CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-CeE------Ee------ccccc
Q psy11350        213 SLASCAQD------GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HSW------RL------DTPLA  273 (471)
Q Consensus       213 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~~------~~------~~~~~  273 (471)
                      +++.||.+      ..+..||..++.............-.++++. ++..+++|+.+ +.-      ..      |....
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a  365 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA  365 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccC
Confidence            56666666      3578888887754443333333233333333 45777888888 441      11      22222


Q ss_pred             cccCCCCcceEEEEECCCCCEEEEEecCCe-----EEEEECCCCcEEEEeeCCCCCeEEEEE-eCCCCEEEEEeCCC---
Q psy11350        274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-----WRLWDLNQGQEVLHQEGHGKPVYCMSF-QGDGSVVATGGLDA---  344 (471)
Q Consensus       274 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~t~~~dg---  344 (471)
                      .+... ........  -+|...++|+.||.     +-.||..+.+--..- ........... .-+|.+.++||.++   
T Consensus       366 ~M~~~-R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  366 PMNTK-RSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             CccCc-cccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            22221 11111111  15778888998864     777887765422111 11112222222 22788888888654   


Q ss_pred             ---eEEEEeCCCCeeE--EEecccCcCEEEEEEcCCCCEEEEEeCCCc-----EEEEECCCccchh
Q psy11350        345 ---FGRVWDLRTGRCI--MFLEGHLKSVFSVDFSPDGYHLATGSEDNA-----VKIWDLRKRRLLK  400 (471)
Q Consensus       345 ---~i~iwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~-----i~iwd~~~~~~~~  400 (471)
                         ++..||..+++-.  ..+..-..... ++.. ++.+.+.||.|+.     |..+|..+.+-..
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence               4678887776432  22221111122 2222 6778888887763     6778887766443

>KOG2280|consensus

Probab=94.37  E-value=2  Score=43.81  Aligned_cols=192  Identities=9%  Similarity=0.055  Sum_probs=99.2

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec---CCCCcceEEEE
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE---GHEPFRVSRIK  249 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~  249 (471)
                      .-.|+|+++ +|..+..+.-..+.+..+.|+.+..      |+....+|++.+|++... .+....   ......|..+.
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee------LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~  134 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE------LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECR  134 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCce------EEEEeccceEEEeecchh-hhcccccccccccCceeEEE
Confidence            356888886 4666655544445788999998875      888899999999998533 222211   11112455555


Q ss_pred             ECCCCCEEEEEeCCCeEEe--cc-ccccc---cCCCCcceEEEEECCCCC---EEEEEe-cCCeEEEEECCCCc-EEEEe
Q psy11350        250 FHPSGRFLGTCCWDHSWRL--DT-PLANL---EGHEPFRVSRIKFHPSGR---FLGTCC-WDHSWRLWDLNQGQ-EVLHQ  318 (471)
Q Consensus       250 ~s~~~~~i~~~~~d~~~~~--~~-~~~~~---~~~~~~~v~~l~~~~~~~---~l~~~~-~dg~i~iwd~~~~~-~~~~~  318 (471)
                      +..+|-.+++.+.+-...-  .. ....+   ... ..+-.|....+++.   .++-.. ..+ ..++-..... ....+
T Consensus       135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~-~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYN-ELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL  212 (829)
T ss_pred             EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCc-cCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc
Confidence            5555544444433221111  00 00111   111 00112222222221   111111 001 1111111111 11122


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec--ccCcCEEEEEEcCC
Q psy11350        319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFSPD  375 (471)
Q Consensus       319 ~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~  375 (471)
                      ......+..+..||+.++|+--...|.|.+-+.+..+++..+.  .| .+...++|.-+
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgn  270 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGN  270 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecC
Confidence            2223567789999999999999999999999888777766665  22 23335666543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.25  E-value=2.2  Score=41.01  Aligned_cols=62  Identities=10%  Similarity=0.110  Sum_probs=38.9

Q ss_pred             CCeEEEEEeCCCCEEEEEeCC-------------------CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        323 KPVYCMSFQGDGSVVATGGLD-------------------AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~d-------------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      .....++|.|||.+.++-+..                   |.|.-++...++.. .+.........++|+|+|.++++-.
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence            446789999999876654421                   44566666554432 2222234567899999998877654


Q ss_pred             CC
Q psy11350        384 ED  385 (471)
Q Consensus       384 ~d  385 (471)
                      .+
T Consensus       203 ~~  204 (367)
T TIGR02604       203 DD  204 (367)
T ss_pred             CC
Confidence            33

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.18  E-value=5.1  Score=37.80  Aligned_cols=58  Identities=24%  Similarity=0.235  Sum_probs=42.1

Q ss_pred             eEEEEEeCCCCEEEEEeCC------CeEEEEeCCCCeeEEEec---------------ccCcCEEEEEEcCCCCEEEEEe
Q psy11350        325 VYCMSFQGDGSVVATGGLD------AFGRVWDLRTGRCIMFLE---------------GHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~~~d------g~i~iwd~~~~~~~~~~~---------------~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      .-+|++.++|.++++.-.+      ..|+.++.. |+.+..+.               ..+...-+|+++|+|+.|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            3478887788888887777      788888876 65544331               1345688999999999776654

>KOG1897|consensus

Probab=94.02  E-value=9.6  Score=40.36  Aligned_cols=225  Identities=15%  Similarity=0.130  Sum_probs=110.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEe-c--cc--cccccCCCCcceEEEEECCC--C----CEEEEEecCCeEEEEEC-CC
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRL-D--TP--LANLEGHEPFRVSRIKFHPS--G----RFLGTCCWDHSWRLWDL-NQ  311 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~-~--~~--~~~~~~~~~~~v~~l~~~~~--~----~~l~~~~~dg~i~iwd~-~~  311 (471)
                      .++....+.+...++.++.++.+.. .  ..  ...........|.|+.++|-  +    +++++|..+..+.+.-. ..
T Consensus       489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd  568 (1096)
T KOG1897|consen  489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD  568 (1096)
T ss_pred             ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence            3444444555556666655554222 1  11  11112223457999999984  2    27888888776554433 33


Q ss_pred             CcEEEEe--eCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEE--eCCCCeeEEEe--cccCcCEEEEEEcCCC-CEEEEE
Q psy11350        312 GQEVLHQ--EGH--GKPVYCMSFQGDGSVVATGGLDAFGRVW--DLRTGRCIMFL--EGHLKSVFSVDFSPDG-YHLATG  382 (471)
Q Consensus       312 ~~~~~~~--~~~--~~~v~~~~~s~d~~~l~t~~~dg~i~iw--d~~~~~~~~~~--~~h~~~v~~~~~sp~~-~~l~s~  382 (471)
                      ...+...  .+.  ...|.-..|-.|..+|.++..||.+.-|  |..++..--.-  .-...++.=-.|+..+ ..++++
T Consensus       569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~  648 (1096)
T KOG1897|consen  569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL  648 (1096)
T ss_pred             cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence            3222222  111  1234444555578899999999998655  44454332221  1123455555565543 344444


Q ss_pred             eCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcc--cccchhhhcccccceeeecccceeeeec
Q psy11350        383 SEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIG--NIISSALKEQVEPIPLLLDIQKLTFKFD  460 (471)
Q Consensus       383 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~fs~d  460 (471)
                      + |.=..+|..+ ++++.+-. ..+....+.++..+..-..+...+.+..  -.+...-+-.++.++.....+.+++.+.
T Consensus       649 s-drP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~  725 (1096)
T KOG1897|consen  649 S-DRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQES  725 (1096)
T ss_pred             C-CCCEEEEecC-CcEEEecc-chHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEeccc
Confidence            3 4333444432 33322100 0001111222222222222222222211  1222333344566777778889999998


Q ss_pred             CCeEEEeecCC
Q psy11350        461 SDLHAMVLNQK  471 (471)
Q Consensus       461 g~~lA~~~~~~  471 (471)
                      ...+++++++.
T Consensus       726 sl~~~v~s~r~  736 (1096)
T KOG1897|consen  726 SLTFGVLSNRI  736 (1096)
T ss_pred             ceEEEEEeccc
Confidence            99999998863

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.89  E-value=0.24  Score=30.43  Aligned_cols=31  Identities=32%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             cCEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q psy11350        365 KSVFSVDFSPDG---YHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       365 ~~v~~~~~sp~~---~~l~s~s~dg~i~iwd~~~  395 (471)
                      +.|.++.|+|++   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4888887889999999995

It contains a characteristic DLL sequence motif.

>KOG1916|consensus

Probab=93.87  E-value=0.13  Score=52.85  Aligned_cols=210  Identities=17%  Similarity=0.300  Sum_probs=117.1

Q ss_pred             cCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCC--CCceEEE-----eecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        150 GDTRPISYCSFSPD-SQHVATASWSGLCKLWTVP--ECELVQT-----FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       150 gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~--~~~~~~~-----~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      |-++.|-.++|-.. ...++  -.-|.+.||++.  .|+....     .......+.-|.|.|--.+.  .++..+-.++
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~--~~ic~~~~~~  205 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK--VYICYGLKGG  205 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc--ceeeeccCCC
Confidence            56677777777431 22222  234778899875  3443322     22334556677787755432  2577777889


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      +|++.++++... ..+..|.. .+..++|-..|-..                         +  -..+|||..|+.++.|
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~-~~~d~a~~~~g~~~-------------------------l--~~lSpDGtv~a~a~~d  256 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQ-RVTDMAFFAEGVLK-------------------------L--ASLSPDGTVFAWAISD  256 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCC-CcccHHHHhhchhh-------------------------h--eeeCCCCcEEEEeecC
Confidence            999888755433 33444443 33333333222111                         1  1279999999999999


Q ss_pred             CeEEEEECC-----CCcEEEEeeCCC-CCeEEEEEeCCC---------CEEEEEe-CCCeEEEEeCCCCeeEEEecccCc
Q psy11350        302 HSWRLWDLN-----QGQEVLHQEGHG-KPVYCMSFQGDG---------SVVATGG-LDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       302 g~i~iwd~~-----~~~~~~~~~~~~-~~v~~~~~s~d~---------~~l~t~~-~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                      |.++.|.+.     .-.++...+.|+ .+-.|.-|+.+.         .++++++ .+..+++|.....+|+.  .....
T Consensus       257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll--~~~~d  334 (1283)
T KOG1916|consen  257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL--DKLID  334 (1283)
T ss_pred             CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh--hhccc
Confidence            988777653     334555666776 443343343321         1344443 44568999877777762  21223


Q ss_pred             CEEEEEEcCCCC------------EEEEEeCCCcEEEEECCC
Q psy11350        366 SVFSVDFSPDGY------------HLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       366 ~v~~~~~sp~~~------------~l~s~s~dg~i~iwd~~~  395 (471)
                      .|..+. -++|.            .+++-+-+++|.+|--+.
T Consensus       335 ~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  335 GVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             ceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            344443 22332            234456788888886544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.79  E-value=0.94  Score=43.87  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=45.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       333 d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ...++++++..|.|++||--.-+.-..+.+....|..+..+.+|.++++.+. ..+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            3458999999999999995433333456667788999999999998877654 467777764

>KOG1898|consensus

Probab=93.71  E-value=11  Score=40.15  Aligned_cols=75  Identities=12%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CcCeEEEEEecCC------CEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCC----ccEEEEEeC
Q psy11350        152 TRPISYCSFSPDS------QHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGA----VCSLASCAQ  219 (471)
Q Consensus       152 ~~~V~~~~~s~~~------~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~----~~~l~s~~~  219 (471)
                      +..|.|+++.+++      ++++.|+.|+.++++.+.-..++..+.  +-..++.++.+-+......    ..+|.+|-.
T Consensus       582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~  661 (1205)
T KOG1898|consen  582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR  661 (1205)
T ss_pred             ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence            4568888988875      579999999999999987555555443  4556677777776654432    346777877


Q ss_pred             CCcEEEE
Q psy11350        220 DGSVKLW  226 (471)
Q Consensus       220 dg~i~iw  226 (471)
                      +|.+.-.
T Consensus       662 NGvllR~  668 (1205)
T KOG1898|consen  662 NGVLLRF  668 (1205)
T ss_pred             ccEEEEE
Confidence            7766544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.69  E-value=4.3  Score=39.06  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=53.3

Q ss_pred             cCeEEEEEecCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--EEEeecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        153 RPISYCSFSPDSQHVATAS-----------WSG-LCKLWTVPE--CEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~-----------~dg-~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+...-.....+++.+++      +++ 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G------lyV-   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG------VYV-   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC------EEE-
Confidence            4566789999999877653           223 677776442  332  23343333445788888775      234 


Q ss_pred             EeCCCcEEEEeCCCC-----cc--e-eeecCC---CCcceEEEEECCCCCEEEEEe
Q psy11350        217 CAQDGSVKLWSLDKD-----TP--L-ANLEGH---EPFRVSRIKFHPSGRFLGTCC  261 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~-----~~--~-~~~~~~---~~~~v~~~~~s~~~~~i~~~~  261 (471)
                      ++.....++.|....     +.  + ..+...   .......+.|.|||.+.++.+
T Consensus        87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            334333334354321     11  1 112221   112366777888877655444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.59  E-value=7  Score=37.32  Aligned_cols=203  Identities=13%  Similarity=0.152  Sum_probs=110.5

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEee----CCCCCCccEEEEEeCC---CcEEEEeCCCC-cc
Q psy11350        162 PDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP----LPSEGAVCSLASCAQD---GSVKLWSLDKD-TP  233 (471)
Q Consensus       162 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~~~~~l~s~~~d---g~i~iwd~~~~-~~  233 (471)
                      |...+++.....+-+.+||+. |+.+..+.  .+..+.+..-.    .+.  ...++++...+   .+|++|.+... ..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~--~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGK--TVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTE--EEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCc--eEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            455688888889999999985 66676664  24555544422    221  11122333332   46899977532 12


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEE--CC-CCC-EEEEEecCCeEEEEEC
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKF--HP-SGR-FLGTCCWDHSWRLWDL  309 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~--~~-~~~-~l~~~~~dg~i~iwd~  309 (471)
                      +..+..... +                              +... ...+..+|+  +| +|. ++++...+|.+..|-+
T Consensus       141 L~~v~~~~~-p------------------------------~~~~-~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L  188 (381)
T PF02333_consen  141 LTDVTDPAA-P------------------------------IATD-LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYEL  188 (381)
T ss_dssp             EEE-CBTTC--------------------------------EE-S-SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEE
T ss_pred             ceEcCCCCc-c------------------------------cccc-cccceeeEEeecCCCCcEEEEEecCCceEEEEEE
Confidence            222211100 0                              0000 123566665  33 344 5666778888777766


Q ss_pred             C---CC----cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----CeeEEEecc--cCcCEEEEEEcC-
Q psy11350        310 N---QG----QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-----GRCIMFLEG--HLKSVFSVDFSP-  374 (471)
Q Consensus       310 ~---~~----~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-----~~~~~~~~~--h~~~v~~~~~sp-  374 (471)
                      .   .+    +.++.+.. ...+..+........|+.|-.+.-|+-|+.+.     ++.+....+  ....|-.|++.. 
T Consensus       189 ~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~  267 (381)
T PF02333_consen  189 TDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG  267 (381)
T ss_dssp             EE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-
T ss_pred             EeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec
Confidence            3   33    35666654 44788889988888999999998888888752     233333322  345788888753 


Q ss_pred             -C--CCEEEEEeCCCcEEEEECCCc-cchhee
Q psy11350        375 -D--GYHLATGSEDNAVKIWDLRKR-RLLKWC  402 (471)
Q Consensus       375 -~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~  402 (471)
                       +  |.+|+|.-.+++..||+.... ..+..|
T Consensus       268 ~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  268 SDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence             3  345566667788999998753 334333

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.44  E-value=3.2  Score=32.89  Aligned_cols=77  Identities=14%  Similarity=0.104  Sum_probs=51.8

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCc--------eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECE--------LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .-.|......|+.++..|.|.|++.....        .+..+. -...|++|+--+-........|+.|+. ..|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34566667789999999999999976332        333333 356788887777543333335666664 67999999


Q ss_pred             CCCccee
Q psy11350        229 DKDTPLA  235 (471)
Q Consensus       229 ~~~~~~~  235 (471)
                      ..+.-+.
T Consensus        81 ~~N~d~F   87 (136)
T PF14781_consen   81 ENNSDLF   87 (136)
T ss_pred             ccCchhh
Confidence            8775443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.41  E-value=0.41  Score=29.41  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             cCeEEEEEecCC---CEEEEEeCCCcEEEEeCCC
Q psy11350        153 RPISYCSFSPDS---QHVATASWSGLCKLWTVPE  183 (471)
Q Consensus       153 ~~V~~~~~s~~~---~~l~tg~~dg~i~iwd~~~  183 (471)
                      +.|.++.|||..   .+|+.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4888888889999999984

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.38  E-value=0.74  Score=40.53  Aligned_cols=66  Identities=15%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             EeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe-------c-------ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFL-------E-------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       330 ~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      +..++.+|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457889999999999999999998765432       1       2456789999998998887765 57889998764


Q ss_pred             c
Q psy11350        396 R  396 (471)
Q Consensus       396 ~  396 (471)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.29  E-value=0.65  Score=40.89  Aligned_cols=66  Identities=17%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCCcEEEEe-------e-------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-------E-------GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      +..++++|++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456889999999999999999998765432       1       3456788888888887776654 57788888654


Q ss_pred             C
Q psy11350        354 G  354 (471)
Q Consensus       354 ~  354 (471)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900|consensus

Probab=93.10  E-value=3.8  Score=44.55  Aligned_cols=160  Identities=11%  Similarity=0.081  Sum_probs=98.6

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCC---CCccEEEEEeCCCcEEEEe
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE---GAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~~~~~l~s~~~dg~i~iwd  227 (471)
                      |...=..+-+-|.=.+.... -|+.+.+|+.+++.....+.+-...|..|..-....+   ....+++..+.--.|.++-
T Consensus        77 ~~~~~~~mGiFpeI~RaWiT-iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWIT-IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             CcceeeeeccchhhcceEEE-eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            33334444455544444333 3899999999998877777776777776665432211   0001233333334565554


Q ss_pred             CC----CCcc---eeeecC-CCCcceEEEEECCCCCEEEEEeCCCeEEe-------ccc-------------------cc
Q psy11350        228 LD----KDTP---LANLEG-HEPFRVSRIKFHPSGRFLGTCCWDHSWRL-------DTP-------------------LA  273 (471)
Q Consensus       228 ~~----~~~~---~~~~~~-~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-------~~~-------------------~~  273 (471)
                      +.    ++..   ...+.. ..+..|.++....+|+.|++|-.++.|.+       |..                   ..
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~  235 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL  235 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence            32    1111   111221 23557999999999999999888877665       100                   11


Q ss_pred             cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCC
Q psy11350        274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       274 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  311 (471)
                      .+.+....+|..+.....-+.+++-+..|+|.+||+..
T Consensus       236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            22233356899999998888999999999999999976

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.01  E-value=15  Score=39.36  Aligned_cols=112  Identities=13%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             cceEEEEECC-CCCEEEEEecCCeEEEEECCCCc-----EEEEeeCCC----------CCeEEEEEeCCCCEEEEEeCCC
Q psy11350        281 FRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQ-----EVLHQEGHG----------KPVYCMSFQGDGSVVATGGLDA  344 (471)
Q Consensus       281 ~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~----------~~v~~~~~s~d~~~l~t~~~dg  344 (471)
                      .+...++|+| +...||+....|.+.||++....     .+.....+.          ..-..+.|.++...|++++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            3678999999 55689999999999999992111     111111111          22347889888777777754 4


Q ss_pred             eEEEEeCCCCeeEE--EecccCcCEEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q psy11350        345 FGRVWDLRTGRCIM--FLEGHLKSVFSVDFSPD--GYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       345 ~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~--~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .+.++|+.+.....  ........|..+.-+|.  +..|+-.+  ..|...++..
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            68899998875532  12224467888888886  33333322  4566667766

These proteins are found in fungi.

>KOG4460|consensus

Probab=92.92  E-value=2.1  Score=41.68  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN  274 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~  274 (471)
                      -.|..+..++.|.     .++-.|.+|.+..+=.+.-..-..+..... .|+|-.+.-+.+++.+.              
T Consensus       104 feV~~vl~s~~GS-----~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~-~v~CRt~~i~~~~ftss--------------  163 (741)
T KOG4460|consen  104 FEVYQVLLSPTGS-----HVALIGIKGLMVMELPKRWGKNSEFEDGKS-TVNCRTTPVAERFFTSS--------------  163 (741)
T ss_pred             EEEEEEEecCCCc-----eEEEecCCeeEEEEchhhcCccceecCCCc-eEEEEeecccceeeccC--------------
Confidence            3466777788887     566777777655543222222223333222 35554444443333221              


Q ss_pred             ccCCCCcceEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEE
Q psy11350        275 LEGHEPFRVSRIKFHPSG---RFLGTCCWDHSWRLWDLNQGQEVL  316 (471)
Q Consensus       275 ~~~~~~~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~  316 (471)
                          ..-.+..++|+|+.   .+|..-+.|.+|++||+.....+.
T Consensus       164 ----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  164 ----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             ----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence                12247788999965   578888889999999998665443

>KOG2377|consensus

Probab=92.86  E-value=3.3  Score=39.73  Aligned_cols=115  Identities=10%  Similarity=0.138  Sum_probs=76.2

Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE----EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL----HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-  354 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-  354 (471)
                      .++|.++.|++|.+.||+--.+.+|.+++....+...    ..+..+..|....|+.. .-++.-...| +-+|-.... 
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            5589999999999999999999999999985433222    22333456889999865 4455544444 666655433 


Q ss_pred             eeEEEecccCcCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCc
Q psy11350        355 RCIMFLEGHLKSVFSVDFSPDGYHLATGS--EDNAVKIWDLRKR  396 (471)
Q Consensus       355 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~dg~i~iwd~~~~  396 (471)
                      +.+...+.|+..|.-..|.++.+.+.-++  ..+++.=+-++++
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            34445567888899999999877544333  3444444444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.81  E-value=0.75  Score=38.85  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=28.6

Q ss_pred             CEEEEEEeeCCCCC-CccEEEEEeCCCcEEEEeCCC
Q psy11350        196 NVGAIEFHPLPSEG-AVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       196 ~v~~l~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      .|.+++|+|.|-.. ..|+|++.+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999977432 367899999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.79  E-value=6.1  Score=41.46  Aligned_cols=32  Identities=13%  Similarity=0.064  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCC
Q psy11350        321 HGKPVYCMSFQGD---GSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       321 ~~~~v~~~~~s~d---~~~l~t~~~dg~i~iwd~~  352 (471)
                      +...|..+.|+|.   +..|++-..|+++|+||+.
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence            4456778888884   4677777788888888874

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=92.68  E-value=3.9  Score=41.71  Aligned_cols=50  Identities=12%  Similarity=0.004  Sum_probs=26.5

Q ss_pred             EEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCe
Q psy11350        304 WRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGR  355 (471)
Q Consensus       304 i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~  355 (471)
                      +.+||..+.+-...  +.........+.+  ++++++.|+.+     +.|.+||..+.+
T Consensus       458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        458 VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            78888876543221  1111111112222  67777777754     467888877653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.48  E-value=3  Score=40.55  Aligned_cols=152  Identities=11%  Similarity=0.074  Sum_probs=89.1

Q ss_pred             cCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCC--ccEEEEEeCCCcEEEEeCCCCc-ceeee
Q psy11350        162 PDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGA--VCSLASCAQDGSVKLWSLDKDT-PLANL  237 (471)
Q Consensus       162 ~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~  237 (471)
                      .|..+|+ .|+....++-.|++.|+.+.....|...  -+.|.|......  ...-+.|-.+..|.--|.+-.. .+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3444444 5566678888899999999998887654  577777653100  0012334444444444443211 11110


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Q psy11350        238 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       238 ~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                      ..                                 ..+.+.  ....+.. .....++|+++..|.|++||--.-+....
T Consensus       555 es---------------------------------KdY~tK--n~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKta  598 (776)
T COG5167         555 ES---------------------------------KDYKTK--NKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTA  598 (776)
T ss_pred             ee---------------------------------hhcccc--ccccccc-cccCceEEEecCCCceeeehhhcchhhhc
Confidence            00                                 000111  1112221 12456899999999999999654444445


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy11350        318 QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~  352 (471)
                      +.+.+..|..+..+.+|+++++.+ ...+.+-|++
T Consensus       599 lP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         599 LPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             CcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            677788899999999999877765 4567777764

>PRK13684 Ycf48-like protein; Provisional

Probab=92.43  E-value=10  Score=35.99  Aligned_cols=116  Identities=13%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEE-EECCCCcEEE-EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRL-WDLNQGQEVL-HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                      ...+..+.+.|++.+++++. .|.+.. +|- .++.-. ...+-...++++.+.++++.+++| ..|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            34688999999887665555 555443 222 222222 222345678999999999887776 4576653233444322


Q ss_pred             EEecc----cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        358 MFLEG----HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       358 ~~~~~----h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      .....    ....+.++.+.|++..+++ +.+|.+. ...+.++.-.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~  293 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWE  293 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCe
Confidence            22111    1245788999998775554 4677654 4555555443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.22  E-value=4.5  Score=34.97  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             CEEEEEecCCeEEEEECCCC--cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEE-eCCC----CeeEE-
Q psy11350        293 RFLGTCCWDHSWRLWDLNQG--QEVLHQEGHGKPVYCMSFQGDGSVVATGGLD------AFGRVW-DLRT----GRCIM-  358 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d------g~i~iw-d~~~----~~~~~-  358 (471)
                      ..|+.+...+.|.+|++.+.  +.+..+. .-+.|..+.++..|.+|+|--.+      ..+|+| |.+.    ..++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45555566788999999832  3344444 45889999999999999985322      256665 2221    12221 


Q ss_pred             Eeccc---------------------CcCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc
Q psy11350        359 FLEGH---------------------LKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       359 ~~~~h---------------------~~~v~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      .+-||                     ..++.+++..|- |+++ .|+ ++++.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEE
Confidence            22222                     235677888884 5544 443 5688899886543

>KOG2247|consensus

Probab=92.11  E-value=0.031  Score=53.29  Aligned_cols=136  Identities=9%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  236 (471)
                      ...|-|.+.-++.++.+..+..||- .++....... .+....++|...+..    .++.+-..+.+.+||+.+..... 
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~-tg~aldm~wDkegdv----lavlAek~~piylwd~n~eytqq-  111 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNP-TGKALDMAWDKEGDV----LAVLAEKTGPIYLWDVNSEYTQQ-  111 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhh-hcceecccCC-chhHhhhhhccccch----hhhhhhcCCCeeechhhhhhHHH-
Confidence            3467788777888888999999984 4444444332 345557888876653    45667778999999997543211 


Q ss_pred             ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Q psy11350        237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL  316 (471)
Q Consensus       237 ~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  316 (471)
                      +....                                      ...-.-+.|++.+..++.+...|.+.|++..+.+.+.
T Consensus       112 LE~gg--------------------------------------~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii  153 (615)
T KOG2247|consen  112 LESGG--------------------------------------TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII  153 (615)
T ss_pred             HhccC--------------------------------------cchHHHHhhccCCccccccccccceEEEeccchhhhh
Confidence            11000                                      0011126788888888888889999999988877666


Q ss_pred             EeeCCCCCeEEEEEeCCCCEE
Q psy11350        317 HQEGHGKPVYCMSFQGDGSVV  337 (471)
Q Consensus       317 ~~~~~~~~v~~~~~s~d~~~l  337 (471)
                      ..-.|...++++++.+.+..+
T Consensus       154 v~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  154 VMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             hhcccccceeEEEecccceee
Confidence            665588999999998876443

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.97  E-value=16  Score=37.45  Aligned_cols=217  Identities=13%  Similarity=0.128  Sum_probs=107.5

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeC-CCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCC-CcEEEEeCCCCcc
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTV-PECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQD-GSVKLWSLDKDTP  233 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~  233 (471)
                      +..++|+.+.+-.|=....|.-|=+ +|.+.+..+. ....-|.|+......... . +.+.|-.+ +.-++..+..+..
T Consensus        32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~-~-~~~~glt~rKk~~ll~i~~~~~  109 (670)
T PF10395_consen   32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGK-K-LYCVGLTERKKFKLLLIERKVG  109 (670)
T ss_pred             ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCc-E-EEEEEEeeCCeeEEEEEEccCc
Confidence            3467888888777765555655544 4677777665 234556666654433210 1 23333233 2233333322200


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ  313 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  313 (471)
                      ...                          ++.... .....+.-.....|-++.|.++++.+++...+|.|.+||...+.
T Consensus       110 ~~~--------------------------~~~~~~-e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~  162 (670)
T PF10395_consen  110 STE--------------------------DGTVNS-ETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENS  162 (670)
T ss_pred             ccc--------------------------ccccCc-cccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccc
Confidence            000                          000000 00011111124468899999999999999999999999993332


Q ss_pred             EE--EEee-CCCCC-eEEEEEeCC------CCEEEEEeC-C---CeEEEEeC-CCCeeEEEec---ccCcCEEEEEEcC-
Q psy11350        314 EV--LHQE-GHGKP-VYCMSFQGD------GSVVATGGL-D---AFGRVWDL-RTGRCIMFLE---GHLKSVFSVDFSP-  374 (471)
Q Consensus       314 ~~--~~~~-~~~~~-v~~~~~s~d------~~~l~t~~~-d---g~i~iwd~-~~~~~~~~~~---~h~~~v~~~~~sp-  374 (471)
                      ..  ..+. .+... +++ .|-++      ..++++-+. +   -..+++.+ .....+..+.   .+........|.- 
T Consensus       163 l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~  241 (670)
T PF10395_consen  163 LEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ  241 (670)
T ss_pred             cccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe
Confidence            11  1111 12221 111 22221      234444333 2   24677777 1222233332   1222222223322 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +|....-  .+++|.+|++.+.+..+++..+
T Consensus       242 ~G~LY~l--~~~~i~~ysip~f~~~~tI~l~  270 (670)
T PF10395_consen  242 FGKLYQL--SKKTISSYSIPNFQIQKTISLP  270 (670)
T ss_pred             CCEEEEE--eCCEEEEEEcCCceEEEEEEec
Confidence            4543322  6789999999999888777554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1983|consensus

Probab=91.60  E-value=9.7  Score=41.73  Aligned_cols=72  Identities=14%  Similarity=0.075  Sum_probs=42.5

Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      +..++.+..+...... +.+...+.+.+|+.........+     .+....+++++..++++..||.+.+||...++.
T Consensus       197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAY-----LPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhc-----ccccccCccCCceEEEEEecCCEEeeecCCCce
Confidence            3344555544443333 33344556666664433222222     222222278899999999999999999999865

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=91.25  E-value=8.7  Score=39.67  Aligned_cols=91  Identities=15%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             EEEEECCCCCEEEEEecCCe-----EEEEECCC---CcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe
Q psy11350        284 SRIKFHPSGRFLGTCCWDHS-----WRLWDLNQ---GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       284 ~~l~~~~~~~~l~~~~~dg~-----i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                      ..+.|-|+|..+++-..||.     |..+....   |..-. -.+....+..++|+-....++. ...+.+.+|-..+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-r~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-RVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-cCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence            34899999999999876652     44443221   11100 0122334556677655444443 356789999765544


Q ss_pred             eEEEecccCcCEEEEEEcCCC
Q psy11350        356 CIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      -.....-.-..+.-+.|+|..
T Consensus       328 WYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         328 WYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEEEeecCCCcceeeecccc
Confidence            333333334567788999953

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.19  E-value=16  Score=35.94  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEee-----cCCCCEEEEEEeeCC---CCCCccEEEEEe---
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFR-----GHDCNVGAIEFHPLP---SEGAVCSLASCA---  218 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~-----~h~~~v~~l~~~~~~---~~~~~~~l~s~~---  218 (471)
                      -...+.|+|.|||++|++--..|.|++++..++..  +..+.     ........|+++|+-   ......++....   
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            45677899999998887776579999998655432  21111     125678899999985   322222232211   


Q ss_pred             -----CCCcEEEEeCCCC--c---ceeee---cCCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        219 -----QDGSVKLWSLDKD--T---PLANL---EGHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       219 -----~dg~i~iwd~~~~--~---~~~~~---~~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                           ....|.-|.+...  .   ....+   .....-.-..+.|.|||.++++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1223444554321  1   11111   11111134578899999877655544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2247|consensus

Probab=91.07  E-value=0.029  Score=53.46  Aligned_cols=141  Identities=15%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEeccc--cccccCCCCcceEEEEECCCCCEEE-EEecCCeEEEEECCCCcEEEE-ee-C
Q psy11350        246 SRIKFHPSGRFLGTCCWDHSWRLDTP--LANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHSWRLWDLNQGQEVLH-QE-G  320 (471)
Q Consensus       246 ~~~~~s~~~~~i~~~~~d~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~-~~-~  320 (471)
                      ....|-|.+..++.++.+..+.....  ...+....++....++|..++..++ .+-..+.+.+||+.+...... +. .
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~  117 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT  117 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence            34566777776777776655433221  2223333345566788888777544 456678999999976432111 11 1


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEE
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~  389 (471)
                      |....  +.|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+.+. .+.++.|..+.
T Consensus       118 ~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~  183 (615)
T KOG2247|consen  118 SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS  183 (615)
T ss_pred             chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence            22222  67899888899999999999999888877666655999999999998754 45555554443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.04  E-value=14  Score=34.86  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=22.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCc------EEEEeCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGL------CKLWTVP  182 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~------i~iwd~~  182 (471)
                      -+.++.+.+.|++..+++.+.+|.      +...++.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~   55 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRID   55 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEee
Confidence            467889999976666777777777      6666554

>KOG4659|consensus

Probab=91.00  E-value=24  Score=38.85  Aligned_cols=38  Identities=13%  Similarity=-0.005  Sum_probs=23.4

Q ss_pred             eeeeeecCCcCeEEEEEec--CC-CEE----EEEeCCCcEEEEeC
Q psy11350        144 IYCSQVGDTRPISYCSFSP--DS-QHV----ATASWSGLCKLWTV  181 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~--~~-~~l----~tg~~dg~i~iwd~  181 (471)
                      ......||.++|.|....-  ++ ++|    ++.+-||.+.|=|.
T Consensus       339 tt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf  383 (1899)
T KOG4659|consen  339 TTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF  383 (1899)
T ss_pred             EEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc
Confidence            3444568999998875432  12 222    24456899988775

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=90.87  E-value=23  Score=36.94  Aligned_cols=170  Identities=21%  Similarity=0.207  Sum_probs=89.2

Q ss_pred             ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc--EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe
Q psy11350        191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS--VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  268 (471)
Q Consensus       191 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~  268 (471)
                      ..+...+..+.|+|++.     .++..+.++.  ..+|-+..+.    ........+....|+|++..++.......-..
T Consensus        56 ~~~~~~~~~~~~spdg~-----~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~  126 (620)
T COG1506          56 LTFGGGVSELRWSPDGS-----VLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR  126 (620)
T ss_pred             cccCCcccccccCCCCC-----EEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEeccccccc
Confidence            34567788999999998     5665553332  3444432221    12222236788899999998888322221110


Q ss_pred             ccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe---
Q psy11350        269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAF---  345 (471)
Q Consensus       269 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~---  345 (471)
                      ...     .+....=..+.|...+      .....+.+.|...  ...........+....+++++..++....+..   
T Consensus       127 ~~~-----~~~~~~~~~~~~~~~g------~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (620)
T COG1506         127 DGG-----DHLFVDRLPVWFDGRG------GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADP  193 (620)
T ss_pred             CCc-----eeeeecccceeecCCC------CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCC
Confidence            000     0000000011122222      2344566666554  33334445566777777777777766654432   


Q ss_pred             ----EEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        346 ----GRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       346 ----i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                          ..++...++. +..+......+..+.|.++|+.++..+
T Consensus       194 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         194 WVTNLYVLIEGNGE-LESLTPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             ceEeeEEEecCCCc-eEEEcCCCceeeeeeeCCCCCeeEEec
Confidence                3333333333 344445556788899999988555443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.39  E-value=6.9  Score=37.00  Aligned_cols=104  Identities=17%  Similarity=0.184  Sum_probs=57.9

Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcE---EEEe----eCCCCCeEEEEEeCC----CCEEEEEeCC-------
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE---VLHQ----EGHGKPVYCMSFQGD----GSVVATGGLD-------  343 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~s~d----~~~l~t~~~d-------  343 (471)
                      ..+.|+|.|+|+.|+ +...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            367899999987665 56699999999 44433   2222    123456889999994    3333333321       


Q ss_pred             -CeEEEEeCCCC-------eeE-EEecc---cCcCEEEEEEcCCCCEEEEEeCCCc
Q psy11350        344 -AFGRVWDLRTG-------RCI-MFLEG---HLKSVFSVDFSPDGYHLATGSEDNA  387 (471)
Q Consensus       344 -g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~~~~sp~~~~l~s~s~dg~  387 (471)
                       ..|.-|.+..+       +.+ ..+..   ....-..|.|.|||.+.++.+..+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence             23444444332       111 11222   2334667999999987777766554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02790 Kelch-like protein; Provisional

Probab=90.20  E-value=9.4  Score=38.28  Aligned_cols=59  Identities=14%  Similarity=0.038  Sum_probs=29.5

Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCC
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTG  354 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~  354 (471)
                      ++...+.|   |.+.+||.++.+-...  +....... +++. -+|++.+.||.+     ..+..||..++
T Consensus       407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            34445555   3567888876543221  11111112 2222 267788888754     24556665544

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=89.99  E-value=16  Score=33.96  Aligned_cols=227  Identities=15%  Similarity=0.046  Sum_probs=108.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC--CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc-------
Q psy11350        163 DSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP-------  233 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------  233 (471)
                      ++++|+.|+.+|...+. +.+  .+..+.+  +..+|+++...+..+-    +++.++....++++++..-..       
T Consensus        12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~l----Li~Lsgk~~~L~~~~L~~L~~~~~~~~~   84 (302)
T smart00036       12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNV----LLMISGKKPQLYSHPLSALVEKKEALGS   84 (302)
T ss_pred             CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCE----EEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence            34689999988865555 544  3444443  4578999999988762    333344445599999732221       


Q ss_pred             --------eeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEe---ccccccc---c------CCCCcceEEEEECCC-
Q psy11350        234 --------LANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRL---DTPLANL---E------GHEPFRVSRIKFHPS-  291 (471)
Q Consensus       234 --------~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~---~~~~~~~---~------~~~~~~v~~l~~~~~-  291 (471)
                              ......+.. ....+.+..... .++++.....+.+   ..+...+   .      .....++..+..+++ 
T Consensus        85 ~~~~~~~~~~~~~~~tk-Gc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T smart00036       85 ARLVIRKNVLTKIPDTK-GCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF  163 (302)
T ss_pred             ccccccccceEeCCcCC-ceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Confidence                    001111111 122222222222 2223333333322   1221111   1      111223444443443 


Q ss_pred             -CCEEEEEecCCeEEEEECCC--CcEEE-----EeeCCC-CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE--EEe
Q psy11350        292 -GRFLGTCCWDHSWRLWDLNQ--GQEVL-----HQEGHG-KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI--MFL  360 (471)
Q Consensus       292 -~~~l~~~~~dg~i~iwd~~~--~~~~~-----~~~~~~-~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~--~~~  360 (471)
                       ...++.|+..+...++++..  ...-.     ...... .++.... -+++.+|++-  |....+-|....+..  ..+
T Consensus       164 ~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l  240 (302)
T smart00036      164 ERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLCY--DEFGVFVNLYGKRRSRNPIL  240 (302)
T ss_pred             cceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEEE--CcEEEEEeCCCCccccceEE
Confidence             45777777653344555432  11000     011111 3443333 3455555543  334444554320111  112


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        361 EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       361 ~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      . -...+.++++.  ..+|+.-+ ++.|.|+++.++..++++..
T Consensus       241 ~-w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      241 H-WEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             E-cCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEec
Confidence            1 23456777776  35666654 45699999999998887764

Unpublished observations.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=89.87  E-value=17  Score=33.84  Aligned_cols=70  Identities=19%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC-----EEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS-----VFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ++++...++|.+|++.-.-..|.+.|-++|+.+-.+.+....     -..++|-.+-+++-.+..++.|.++|=.
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            778888889999999999999999999999999888765221     1124555565666566788999999963

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.38  E-value=22  Score=34.55  Aligned_cols=142  Identities=12%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEecccc----ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc-----EE
Q psy11350        245 VSRIKFHPSGRFLGTCCWDHSWRLDTPL----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ-----EV  315 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~~d~~~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~  315 (471)
                      ...+..+++|.+++++.....+..+..-    ..........+..+.|.+++..++++ ..|.+.. ....++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            4456678888888777666555443332    12233334568999999998877665 4565433 333443     12


Q ss_pred             EEeeC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec---ccCcCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy11350        316 LHQEG--HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE---GHLKSVFSVDFSPDGYHLATGSEDNAVKI  390 (471)
Q Consensus       316 ~~~~~--~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s~dg~i~i  390 (471)
                      .....  ....++++.|.+++..+++| ..|.+.... ..|+.-....   .-...++.+.|.++++.+++| .+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            22211  22358899999888766665 667665553 4444333322   224578899998776666665 6777655


Q ss_pred             E
Q psy11350        391 W  391 (471)
Q Consensus       391 w  391 (471)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            4

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.28  E-value=11  Score=39.06  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=51.0

Q ss_pred             EEEEECCCCCEEEEEeCCCe-----EEeccccc------cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Q psy11350        246 SRIKFHPSGRFLGTCCWDHS-----WRLDTPLA------NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE  314 (471)
Q Consensus       246 ~~~~~s~~~~~i~~~~~d~~-----~~~~~~~~------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  314 (471)
                      ..+.|-|.|..+++-..||.     +.+.....      .+.......+..++|+-....++.+. .+.|++|-..+..-
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhW  328 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHW  328 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEE
Confidence            34889999999999887765     22211111      11111122456677776555554443 56799998776554


Q ss_pred             EEEeeCCCCCeEEEEEeCC
Q psy11350        315 VLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       315 ~~~~~~~~~~v~~~~~s~d  333 (471)
                      .......-..+.-+.|+|.
T Consensus       329 YLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         329 YLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             EEEEeecCCCcceeeeccc
Confidence            4444334445666788884

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.25  E-value=24  Score=34.74  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=25.3

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      ..|..++..+..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4499999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.23  E-value=23  Score=34.56  Aligned_cols=174  Identities=10%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             EeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEE
Q psy11350        179 WTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLG  258 (471)
Q Consensus       179 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~  258 (471)
                      |...-+. -..+....-.|..+.-.+.+.+    .++.|+..|.++||+...+...                        
T Consensus        10 Wst~~~~-~e~~d~~~l~v~~~~~~~~~~d----~IivGS~~G~LrIy~P~~~~~~------------------------   60 (418)
T PF14727_consen   10 WSTKCGE-NEEFDQGSLCVGNLDNSPSGSD----KIIVGSYSGILRIYDPSGNEFQ------------------------   60 (418)
T ss_pred             eeccCCC-CCcCcCceEEEEcccCCCCCcc----EEEEeccccEEEEEccCCCCCC------------------------


Q ss_pred             EEeCCCeEEeccccccccCCCCcceEEEEECC----CCCEEEEEecCCeEEEEEC---------CCCcEEEEeeCCCCCe
Q psy11350        259 TCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP----SGRFLGTCCWDHSWRLWDL---------NQGQEVLHQEGHGKPV  325 (471)
Q Consensus       259 ~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~iwd~---------~~~~~~~~~~~~~~~v  325 (471)
                                 .....++.....+|..+..-+    .....++.-.-..+.+|.+         .+.-.+..+..|.-.-
T Consensus        61 -----------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~  129 (418)
T PF14727_consen   61 -----------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQR  129 (418)
T ss_pred             -----------CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEeccc


Q ss_pred             EEEEE-------eCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        326 YCMSF-------QGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       326 ~~~~~-------s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      ++..+       .....+|.+=+.||.+.+|+-+.......+.+ .--...+.|.|....|++++.+..|.-|..
T Consensus       130 ~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  130 TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.18  E-value=7.2  Score=40.37  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             ceEEEEECC--CCCEEEEEecCCeEEEEECCC-------C-------------cEEEEeeCCCCCeEEEEEe--CCCCEE
Q psy11350        282 RVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQ-------G-------------QEVLHQEGHGKPVYCMSFQ--GDGSVV  337 (471)
Q Consensus       282 ~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~d~~~l  337 (471)
                      .|+.|....  ....|+.+..||.|.+|.+++       .             ++...+. -...+.+++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            455555544  455889999999999997631       0             0111111 24468889998  778899


Q ss_pred             EEEeCCCeEEEEeCCCC--eeEE-EecccCcCEEEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q psy11350        338 ATGGLDAFGRVWDLRTG--RCIM-FLEGHLKSVFSVDFSPDG---Y---HLATGSEDNAVKIWDL  393 (471)
Q Consensus       338 ~t~~~dg~i~iwd~~~~--~~~~-~~~~h~~~v~~~~~sp~~---~---~l~s~s~dg~i~iwd~  393 (471)
                      |+++....|.||-....  +... .-..|...|-+|+|.++.   .   .|++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99998888888865432  1111 111256679999998743   2   7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.10  E-value=2.1  Score=43.76  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             CEEEEEEcC----CCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        366 SVFSVDFSP----DGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       366 ~v~~~~~sp----~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      .+..+++++    +..+|++.+.|+++|+||+.+++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455666666    6789999999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2063|consensus

Probab=89.06  E-value=22  Score=38.04  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=43.7

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceE---EE------ee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELV---QT------FR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~---~~------~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ++..-|+.|..|+.+|.+.+|.+.+....   ..      +.  -+..+|..+...+.-.      ++-.-.|+.|.+++
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~------~ll~l~dsqi~~~~   94 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLE------LLLILSDSQIAVHK   94 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhc------chheecCCcceeee
Confidence            34556789999999999999998643111   11      10  1246666666666544      33444577888888


Q ss_pred             CCCCcc
Q psy11350        228 LDKDTP  233 (471)
Q Consensus       228 ~~~~~~  233 (471)
                      +.+-+.
T Consensus        95 l~~~~~  100 (877)
T KOG2063|consen   95 LPELEP  100 (877)
T ss_pred             cCcccc
Confidence            765554

>KOG4460|consensus

Probab=88.90  E-value=8.4  Score=37.80  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEe---------CCCCeeEEEe-----------cccCcCEEEEEEcCCC---CEEE
Q psy11350        324 PVYCMSFQGDGSVVATGGLDAFGRVWD---------LRTGRCIMFL-----------EGHLKSVFSVDFSPDG---YHLA  380 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~~dg~i~iwd---------~~~~~~~~~~-----------~~h~~~v~~~~~sp~~---~~l~  380 (471)
                      .|..+..++.|..++-.|.+|.+.++=         +..|+.+...           ....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            467788899999999999999765431         1233222111           0111246678999975   6788


Q ss_pred             EEeCCCcEEEEECCCccchh
Q psy11350        381 TGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~  400 (471)
                      .-+.|++|++||+....-++
T Consensus       185 iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEecCcEEEEEecCCcchhh
Confidence            88899999999998877664

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.10  E-value=3  Score=25.17  Aligned_cols=40  Identities=20%  Similarity=0.086  Sum_probs=27.7

Q ss_pred             CCCCEEEEEe-CCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        332 GDGSVVATGG-LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       332 ~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      |+++.|+++. .++.|.++|..+++.+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            5677666654 578999999999888877765 233445544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.02  E-value=12  Score=29.76  Aligned_cols=109  Identities=8%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             EECCCCCEEEEEecCCeEEEEECCCCc--------EEEEeeCCCCCeEEEEEeC-----CCCEEEEEeCCCeEEEEeCCC
Q psy11350        287 KFHPSGRFLGTCCWDHSWRLWDLNQGQ--------EVLHQEGHGKPVYCMSFQG-----DGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       287 ~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~s~-----d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      .|......|++++..|.|.|++.....        .+..+ .-...|++++-.+     +...|+.|+ ...+..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            455556678888888999999865432        22222 2455677776544     234666665 56789999988


Q ss_pred             CeeEEEecccCcCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCccc
Q psy11350        354 GRCIMFLEGHLKSVFSVDFSP---DGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       354 ~~~~~~~~~h~~~v~~~~~sp---~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      ..-+..-. -...|.++.+-.   ...-++..+.+..|.=||..-.+.
T Consensus        83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             Cchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            76654333 336677776632   122344444566777777654443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.00  E-value=2.6  Score=43.06  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             CCCCEEEEEecCCeEEEEECCC----CcEEEEe-----------eC-----------CCCCeEEEEEeC----CCCEEEE
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQ----GQEVLHQ-----------EG-----------HGKPVYCMSFQG----DGSVVAT  339 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~-----------~~-----------~~~~v~~~~~s~----d~~~l~t  339 (471)
                      ++...|+++..||.+.......    +......           .+           ....+.++++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667788888888888877664    2111111           00           123455666666    6789999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEe
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      .+.|+.+|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.86  E-value=8.6  Score=33.29  Aligned_cols=49  Identities=20%  Similarity=0.288  Sum_probs=35.6

Q ss_pred             EEEEEeCCCcEEEEeCCCC--cceeeecCCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        213 SLASCAQDGSVKLWSLDKD--TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                      .|+.+...+.|.+|++.+.  +....|..-  ..|..+.++..|+++++--.+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEeccccceEEEEEee
Confidence            3444466788999999833  345555544  379999999999999987544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.84  E-value=2.9  Score=25.23  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             cCCCEEEEEe-CCCcEEEEeCCCCceEEEeec
Q psy11350        162 PDSQHVATAS-WSGLCKLWTVPECELVQTFRG  192 (471)
Q Consensus       162 ~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~  192 (471)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5778777665 478999999998888877765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.45  E-value=4.1  Score=34.33  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=26.4

Q ss_pred             cCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCc
Q psy11350        365 KSVFSVDFSPDG------YHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       365 ~~v~~~~~sp~~------~~l~s~s~dg~i~iwd~~~~  396 (471)
                      ..|.+++|||.|      -+|++.+.+|.|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            479999999943      47889999999999987644

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=87.24  E-value=34  Score=34.23  Aligned_cols=231  Identities=12%  Similarity=-0.024  Sum_probs=111.8

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ..+|.++.+.-.| .|.+|+.+| +..||..+++.++.-.... .+|..+.-.-.+.      +..|+.+| |.+.+...
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~------LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR------LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc------EEEEeccc-eEEEchhh
Confidence            4578888888777 466777666 5667877877766544333 5666666655554      77777666 66666554


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccccc------CCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE------GHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      .+...-...-....|..+.-.. ...+-.|+..|.++...+...+.      .+.-..|.++....+|+ |.+++.+|.+
T Consensus       235 ~~~sn~~~~lp~~~I~ll~qD~-qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv  312 (671)
T COG3292         235 WRASNWGPMLPSGNILLLVQDA-QGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIV  312 (671)
T ss_pred             ccccccCCCCcchheeeeeccc-CCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceE
Confidence            2221111111111232222222 33556677777765533222211      11122355555555554 5667767766


Q ss_pred             EEEECCCCcEEEEeeCCCC-CeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecc-cCcCEEEEEEcCCCCEEE
Q psy11350        305 RLWDLNQGQEVLHQEGHGK-PVYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEG-HLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~-~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~  380 (471)
                      ++-+.. ......+....+ .+...+..|  .+..+--...-|.+.+-+-.+|..+.+... ....|+.+++..+|. +-
T Consensus       313 ~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-lW  390 (671)
T COG3292         313 RYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-LW  390 (671)
T ss_pred             EEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCc-EE
Confidence            654432 111111111111 111111111  111222222223344444445544443221 224566667766444 55


Q ss_pred             EEeCCCcEEEEECCC
Q psy11350        381 TGSEDNAVKIWDLRK  395 (471)
Q Consensus       381 s~s~dg~i~iwd~~~  395 (471)
                      .|+..+-+..|+..+
T Consensus       391 lgs~q~GLsrl~n~n  405 (671)
T COG3292         391 LGSMQNGLSRLDNKN  405 (671)
T ss_pred             EEecccchhhhccCC
Confidence            555554566677766

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.15  E-value=25  Score=32.50  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=77.6

Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC-----CEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG-----RFLG  296 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~  296 (471)
                      .|.+||+.+++.++++.-+...                               ..  ....+..+.+....     .+++
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~-------------------------------~~--~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDI-------------------------------AP--PDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCC-------------------------------S---TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             EEEEEECCCCcEEEEEECChHH-------------------------------cc--cccccceEEEEccCCCCcceEEE
Confidence            5778888888877776544320                               00  13346666665522     2333


Q ss_pred             EEec-CCeEEEEECCCCcEEEEeeCC-------------------CCCeEEEEEeC---CCCEEEEEeCCCeEEEEeCCC
Q psy11350        297 TCCW-DHSWRLWDLNQGQEVLHQEGH-------------------GKPVYCMSFQG---DGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       297 ~~~~-dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~s~---d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      .+.. .+.|.++|+.+++.-+.+..+                   ...+..++.+|   +++.|+-+...+. ++|.+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence            3332 357999999988655443221                   12255666655   5566665554332 2332221


Q ss_pred             -----Ce---------eEEEecccC-cCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        354 -----GR---------CIMFLEGHL-KSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       354 -----~~---------~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                           ..         .+..+ +.. .....++.+++|.++++--..+.|..|+..+
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             HHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence                 10         11122 222 3567788999999999999999999999886

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=86.60  E-value=39  Score=34.18  Aligned_cols=214  Identities=12%  Similarity=0.088  Sum_probs=99.3

Q ss_pred             CcCeEEEEEecCC-CEEEEEeCC--CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCc-----cEEEEEe---CC
Q psy11350        152 TRPISYCSFSPDS-QHVATASWS--GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAV-----CSLASCA---QD  220 (471)
Q Consensus       152 ~~~V~~~~~s~~~-~~l~tg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~-----~~l~s~~---~d  220 (471)
                      ....+++.+-.+| .+|+.|+.-  +.+..|.....+.+..+.. -+||..++..+.......     ..|++++   .+
T Consensus       255 ~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~  333 (504)
T PF10433_consen  255 CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKR  333 (504)
T ss_dssp             -S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG
T ss_pred             CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC-cCCccceEEeccccCCCCcccccceEEEEECcCCC
Confidence            4445566655554 477777754  4555566445556666654 478999999755322221     0244443   56


Q ss_pred             CcEEEEeCCCCccee-----eecCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccccccccCCCCcceEEE---EECCC
Q psy11350        221 GSVKLWSLDKDTPLA-----NLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRI---KFHPS  291 (471)
Q Consensus       221 g~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l---~~~~~  291 (471)
                      |.+++..-  |-...     .........++.+.... ++.+++.+..+.+..+....    ......+..+   .|..+
T Consensus       334 gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~----~d~~e~~~e~~~~~f~~~  407 (504)
T PF10433_consen  334 GSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISE----GDDGEEVEEVEEDGFDTD  407 (504)
T ss_dssp             -EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES--------SSEEEEE---TS-SS
T ss_pred             CcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEec----ccCCcchhhhhhccCCCC
Confidence            78888752  22211     11111112444444332 25677777766663222110    0000011000   22223


Q ss_pred             CCEEEEEec---------CCeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        292 GRFLGTCCW---------DHSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       292 ~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      ...|+++..         ...|++.+...++....... ....|.+.+..  +.+++.+..++.+..+.+..........
T Consensus       408 ~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~  485 (504)
T PF10433_consen  408 EPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDN  485 (504)
T ss_dssp             S-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeee
Confidence            333333332         34488888877777666543 34455555543  3566777778889999887765543222


Q ss_pred             -c----cCcCEEEEEEcC
Q psy11350        362 -G----HLKSVFSVDFSP  374 (471)
Q Consensus       362 -~----h~~~v~~~~~sp  374 (471)
                       .    ....|.|+...|
T Consensus       486 ~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  486 DETILELDNEISCLSIEP  503 (504)
T ss_dssp             ----EE-SS-EEEEE---
T ss_pred             ccccccCCCceEEEEeCC
Confidence             1    356788888766

...

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.60  E-value=31  Score=33.14  Aligned_cols=193  Identities=9%  Similarity=-0.054  Sum_probs=100.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEeecCC--CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        166 HVATASWSGLCKLWTVPECELVQTFRGHD--CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       166 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      .++++..+|.|.-.|..+++.+.....-.  ..+..-.+..++.      ++.++.+|.+..+|..+|+.+.......  
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~------i~~g~~~g~~y~ld~~~G~~~W~~~~~~--  141 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK------IYVGSWDGKLYALDASTGTLVWSRNVGG--  141 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe------EEEecccceEEEEECCCCcEEEEEecCC--
Confidence            45555778888888888888665433221  2223333333554      8888889988888887787766655432  


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCC-
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG-  322 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  322 (471)
                      .   ..                                 +..-..-.+ ..++.++.++.+...|..+++......... 
T Consensus       142 ~---~~---------------------------------~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~  184 (370)
T COG1520         142 S---PY---------------------------------YASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAP  184 (370)
T ss_pred             C---eE---------------------------------EecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCc
Confidence            0   00                                 000011112 223333356777777777776654433211 


Q ss_pred             --CCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCeeEEEecccC----cCEEEEEEcCC-----CCEEEEEeCCCcEE
Q psy11350        323 --KPVYCMSFQGDGSVVATGGL--DAFGRVWDLRTGRCIMFLEGHL----KSVFSVDFSPD-----GYHLATGSEDNAVK  389 (471)
Q Consensus       323 --~~v~~~~~s~d~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~sp~-----~~~l~s~s~dg~i~  389 (471)
                        ..+..--...++ .++.+..  ++.+.-.|..+|........+.    ..+........     +..++.++.++.+.
T Consensus       185 ~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~  263 (370)
T COG1520         185 LSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLL  263 (370)
T ss_pred             cccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEE
Confidence              111110012233 3444444  5667777877777665532111    11100101111     22335666777788


Q ss_pred             EEECCCccchheecc
Q psy11350        390 IWDLRKRRLLKWCTQ  404 (471)
Q Consensus       390 iwd~~~~~~~~~~~~  404 (471)
                      ..|..+++.+-.+..
T Consensus       264 ~l~~~~G~~~W~~~~  278 (370)
T COG1520         264 CLDADTGELIWSFPA  278 (370)
T ss_pred             EEEcCCCceEEEEec
Confidence            888888888776655

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.41  E-value=32  Score=33.96  Aligned_cols=102  Identities=14%  Similarity=0.031  Sum_probs=59.2

Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEe----e-CCCCCeEEEEEeCCC------CEEEEEe-------
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE--VLHQ----E-GHGKPVYCMSFQGDG------SVVATGG-------  341 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~-~~~~~v~~~~~s~d~------~~l~t~~-------  341 (471)
                      ..+.|+|.|++++|++--..|.|++++..++..  +..+    . .....+..|+++|+-      .+|+...       
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~  110 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK  110 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence            468899999997776655469999998655432  2111    1 125678899999874      2344332       


Q ss_pred             ---CCCeEEEEeCCCC-------eeEE-Eec---ccCcCEEEEEEcCCCCEEEEEeCC
Q psy11350        342 ---LDAFGRVWDLRTG-------RCIM-FLE---GHLKSVFSVDFSPDGYHLATGSED  385 (471)
Q Consensus       342 ---~dg~i~iwd~~~~-------~~~~-~~~---~h~~~v~~~~~sp~~~~l~s~s~d  385 (471)
                         ....|.-|.+...       +.+. .+.   .|.  -..|+|.|||.++++.++.
T Consensus       111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence               1234544544311       1111 111   132  3467899999877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2377|consensus

Probab=86.27  E-value=23  Score=34.35  Aligned_cols=132  Identities=12%  Similarity=0.069  Sum_probs=73.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC--ceEEEe-ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec-
Q psy11350        163 DSQHVATASWSGLCKLWTVPEC--ELVQTF-RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE-  238 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~--~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  238 (471)
                      |.+.++.+...|.+.=|-+...  ...-.+ ....++|.+|.|++++.     .++.--.+.+|.+++....+...... 
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-----ilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-----ILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-----eEEEEecCceEEEEecCCCchhhHHHH
Confidence            3333333444566666655432  222222 23467999999999998     79999999999999874433322211 


Q ss_pred             -CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEE
Q psy11350        239 -GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG-QEVL  316 (471)
Q Consensus       239 -~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~  316 (471)
                       ...+                                     ...|.+..|+.+ .-+|..+..| +-+|-+... +.++
T Consensus       107 ~ck~k-------------------------------------~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslR  147 (657)
T KOG2377|consen  107 ECKTK-------------------------------------NANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLR  147 (657)
T ss_pred             HhccC-------------------------------------cceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhh
Confidence             1111                                     113666666654 3444444333 445544332 2344


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEE
Q psy11350        317 HQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       317 ~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                      ..+.|...|+-..|.++-+.++
T Consensus       148 lVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  148 LVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhcccCccEEEEccccceEe
Confidence            4556666777777777655433

>KOG1900|consensus

Probab=86.24  E-value=9.5  Score=41.73  Aligned_cols=74  Identities=18%  Similarity=0.352  Sum_probs=49.1

Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEE--EeCCCC---e-e----------------EEEec-ccCcCEEEEEEcCCCC
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDAFGRV--WDLRTG---R-C----------------IMFLE-GHLKSVFSVDFSPDGY  377 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg~i~i--wd~~~~---~-~----------------~~~~~-~h~~~v~~~~~sp~~~  377 (471)
                      .+..|+++....+|+.+++| .||.|+=  |....+   + +                +..+. .+..+|..+.......
T Consensus       177 dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            34567788877777766665 4553321  111111   0 0                11223 5667999999998888


Q ss_pred             EEEEEeCCCcEEEEECCC
Q psy11350        378 HLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       378 ~l~s~s~dg~i~iwd~~~  395 (471)
                      .+.+-+..|+|.+||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            999999999999999976

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.10  E-value=26  Score=31.67  Aligned_cols=182  Identities=14%  Similarity=0.011  Sum_probs=106.8

Q ss_pred             EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---c--
Q psy11350        199 AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---A--  273 (471)
Q Consensus       199 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~--  273 (471)
                      .++-.|++.     .-+++...+.|--.|..+|+... +.......-..+..-|||..-++-+.....++....   .  
T Consensus        66 dvapapdG~-----VWft~qg~gaiGhLdP~tGev~~-ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          66 DVAPAPDGA-----VWFTAQGTGAIGHLDPATGEVET-YPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             ccccCCCCc-----eEEecCccccceecCCCCCceEE-EecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence            455556654     45555555666666666664332 222223355566667776655544443333332110   0  


Q ss_pred             c-ccCCCCcceEEEEECCCCCEEEEEecC---------CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC
Q psy11350        274 N-LEGHEPFRVSRIKFHPSGRFLGTCCWD---------HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD  343 (471)
Q Consensus       274 ~-~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d  343 (471)
                      . -..+.........|.+.|++-+++...         +.|++|+.-          ....-+.|+..|||..-++.-.+
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence            1 122334457788999999988887632         234444433          23345678899999998888888


Q ss_pred             CeEEEEeCCCCeeEEEec---ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        344 AFGRVWDLRTGRCIMFLE---GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +.|-..|..++..- .+.   ........+--+|.|+.-+|....+.+.-+|-....
T Consensus       210 naiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         210 NAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             cceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            88888887776322 222   212334555556788888887778888888866544

>KOG3616|consensus

Probab=85.83  E-value=16  Score=37.60  Aligned_cols=96  Identities=13%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      ..-++++.-+|.|+-++.+..||.|++|+......  +...   ..+-..+.|...|       |++...|..+.-|.- 
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnhg-------l~~~tsdrr~la~~~-   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNHG-------LVTATSDRRALAWKE-   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeeccc-------eEEEeccchhheeec-
Confidence            44567788889999999999999999999754332  2222   2333455665554       778888888888873 


Q ss_pred             CCcceeeec--CCCCcceEEEEECCCCCEEE
Q psy11350        230 KDTPLANLE--GHEPFRVSRIKFHPSGRFLG  258 (471)
Q Consensus       230 ~~~~~~~~~--~~~~~~v~~~~~s~~~~~i~  258 (471)
                      .|.....|.  ........++...|..+.++
T Consensus        83 dgvvqqqfdyndqsekefss~~cdptaqnvv  113 (1636)
T KOG3616|consen   83 DGVVQQQFDYNDQSEKEFSSILCDPTAQNVV  113 (1636)
T ss_pred             cCcchhhccccchhhhhccceecCchhhhhh
Confidence            343222332  22222455566666555443

>KOG2280|consensus

Probab=85.34  E-value=50  Score=34.29  Aligned_cols=170  Identities=15%  Similarity=0.142  Sum_probs=85.5

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe----ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF----RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .++..+.|+.+.. |+.-..+|++.+|++.. +.+..+    ......|..+.+..+|       ++.-..+|.+.+-+-
T Consensus        84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G-------Vavlt~~g~v~~i~~  154 (829)
T KOG2280|consen   84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG-------VAVLTVSGQVILING  154 (829)
T ss_pred             CCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc-------eEEEecCCcEEEEcC
Confidence            3788999997755 55566799999999743 322221    1122334444444444       444445566555442


Q ss_pred             CCCcceeeecCCCCcce--EEEEECCCCC---EEEEEe-CCCe--EEecc--c-cccccCCCCcceEEEEECCCCCEEEE
Q psy11350        229 DKDTPLANLEGHEPFRV--SRIKFHPSGR---FLGTCC-WDHS--WRLDT--P-LANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v--~~~~~s~~~~---~i~~~~-~d~~--~~~~~--~-~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      .......+++.-.....  .+-...+++.   .++-.. ..+.  .....  . ...+... ...+..+..||+.++|+-
T Consensus       155 ~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~-~~~~~ki~VS~n~~~laL  233 (829)
T KOG2280|consen  155 VEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP-NSSVVKISVSPNRRFLAL  233 (829)
T ss_pred             CCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC-CceEEEEEEcCCcceEEE
Confidence            22222222222111111  2222222211   111111 1111  00000  0 0011111 235888999999999999


Q ss_pred             EecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeCC
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQGD  333 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~d  333 (471)
                      -+..|.|.+-+.+..+....+.  .|..+ ..++|..+
T Consensus       234 yt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgn  270 (829)
T KOG2280|consen  234 YTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGN  270 (829)
T ss_pred             EecCCcEEEEecchhhhhhccCCCCCCch-HhceeecC
Confidence            9999999999988777666554  33332 25555443

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.52  E-value=34  Score=31.76  Aligned_cols=70  Identities=14%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCC-C----eEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK-P----VYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~----v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      -+.+|...++|.+|+++-.-.+|.+.|-.+++.+..+.+... .    -...++..|-+++-.+..++.|.|+|=
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            488899999999999999999999999999998888866521 1    112344434445544556677777764

>PLN02153 epithiospecifier protein

Probab=83.90  E-value=40  Score=31.99  Aligned_cols=23  Identities=0%  Similarity=-0.187  Sum_probs=14.8

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCc
Q psy11350        163 DSQHVATASWS-------GLCKLWTVPECE  185 (471)
Q Consensus       163 ~~~~l~tg~~d-------g~i~iwd~~~~~  185 (471)
                      ++.+++.|+.+       ..+.+||+.+.+
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~   61 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT   61 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCE
Confidence            45666667653       357888887654

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.16  E-value=53  Score=32.90  Aligned_cols=201  Identities=14%  Similarity=0.072  Sum_probs=86.5

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC--cceEEEEE
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP--FRVSRIKF  250 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~  250 (471)
                      .+...++|. +|..+..+.........+...+++.      |+.+.. ..+..+|+ .|+.+..+.....  .--..+..
T Consensus       127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~------ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~  197 (477)
T PF05935_consen  127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGN------LLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDE  197 (477)
T ss_dssp             EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-------EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE
T ss_pred             CceEEEECC-CccEEEEEccCccccceeeEcCCCC------EEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEE
Confidence            455566663 4555544432111111156667776      444443 77888887 4665555443332  12345677


Q ss_pred             CCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEE----------ee
Q psy11350        251 HPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ-EVLH----------QE  319 (471)
Q Consensus       251 s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~----------~~  319 (471)
                      .|+|++|+.+...............    ...|..+  .++|         ..+..||+..-- +...          ..
T Consensus       198 l~nGn~L~l~~~~~~~~~~~~~~~~----~D~Ivev--d~tG---------~vv~~wd~~d~ld~~~~~~~~~~~~~~~~  262 (477)
T PF05935_consen  198 LPNGNLLILASETKYVDEDKDVDTV----EDVIVEV--DPTG---------EVVWEWDFFDHLDPYRDTVLKPYPYGDIS  262 (477)
T ss_dssp             -TTS-EEEEEEETTEE-TS-EE-------S-EEEEE---TTS----------EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred             CCCCCEEEEEeecccccCCCCccEe----cCEEEEE--CCCC---------CEEEEEehHHhCCcccccccccccccccc
Confidence            7888888777643322210000000    0011111  1222         345677764321 0010          00


Q ss_pred             C---CC--CCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCE-------E-E--------------EE
Q psy11350        320 G---HG--KPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV-------F-S--------------VD  371 (471)
Q Consensus       320 ~---~~--~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v-------~-~--------------~~  371 (471)
                      +   ..  ..++++.+.+ ++.+|+++-.-..|...|.++++....+..|...-       . -              ..
T Consensus       263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~  342 (477)
T PF05935_consen  263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFD  342 (477)
T ss_dssp             -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS--
T ss_pred             cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCc
Confidence            0   00  2478999999 55566666555689999988888877776543211       0 0              11


Q ss_pred             EcCCCCEEEEEeCCC---cEEEEECCCccc
Q psy11350        372 FSPDGYHLATGSEDN---AVKIWDLRKRRL  398 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg---~i~iwd~~~~~~  398 (471)
                      | +-|++-+.--.+|   .|.++|=..++.
T Consensus       343 ~-~~gQH~~~~~~~g~~~~l~vFDNg~~r~  371 (477)
T PF05935_consen  343 W-FWGQHTAHLIPDGPQGNLLVFDNGNGRG  371 (477)
T ss_dssp             ---SS-EEEEE-TTS---SEEEEE--TTGG
T ss_pred             c-cccccceEEcCCCCeEEEEEEECCCCCC
Confidence            1 1356666666777   888888655543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN02193 nitrile-specifier protein

Probab=83.12  E-value=53  Score=32.85  Aligned_cols=64  Identities=16%  Similarity=0.081  Sum_probs=35.8

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCeeEEEecc---c-CcCEEEEEEcCCCCEEEEEeCC--------------CcEEE
Q psy11350        333 DGSVVATGGLD----AFGRVWDLRTGRCIMFLEG---H-LKSVFSVDFSPDGYHLATGSED--------------NAVKI  390 (471)
Q Consensus       333 d~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~---h-~~~v~~~~~sp~~~~l~s~s~d--------------g~i~i  390 (471)
                      ++++++.++.+    ..+.+||+.+.+-...-..   . .....+++ .-++++++.|+..              +.+.+
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~  406 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA  406 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEE
Confidence            56777777755    4589999887653322110   1 11112222 2256777777753              24778


Q ss_pred             EECCCcc
Q psy11350        391 WDLRKRR  397 (471)
Q Consensus       391 wd~~~~~  397 (471)
                      +|+.+.+
T Consensus       407 ~D~~t~~  413 (470)
T PLN02193        407 LDTETLQ  413 (470)
T ss_pred             EEcCcCE
Confidence            8887664

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.12  E-value=11  Score=27.62  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=28.7

Q ss_pred             EeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      +..+|.+..||..+++....+.+ -.-.+.|++++|+.+|+.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            34578899999998875544443 3467899999999977765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.35  E-value=6.4  Score=23.35  Aligned_cols=30  Identities=23%  Similarity=0.246  Sum_probs=19.7

Q ss_pred             ccCcCEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q psy11350        362 GHLKSVFSVDFSPDGYHLATGS-ED--NAVKIW  391 (471)
Q Consensus       362 ~h~~~v~~~~~sp~~~~l~s~s-~d--g~i~iw  391 (471)
                      .....-....|+|||++|+-++ .+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678889999998876554 44  566555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.24  E-value=35  Score=31.34  Aligned_cols=54  Identities=7%  Similarity=0.092  Sum_probs=37.6

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe------CCCcEEEEeCCCC
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA------QDGSVKLWSLDKD  231 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~  231 (471)
                      -..|++||..+.+-...-.+-.+.|+++.|.....     +++.|.      ....+..||+.+.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-----Llv~G~ft~~~~~~~~la~yd~~~~   74 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-----LLVGGNFTLNGTNSSNLATYDFKNQ   74 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-----EEEEEeeEECCCCceeEEEEecCCC
Confidence            35699999877665555455678899999986554     566554      3456778887655

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=82.20  E-value=64  Score=33.13  Aligned_cols=185  Identities=15%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             ceEEEEECCCCCEEEEEe-----cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe---EEEEe--C
Q psy11350        282 RVSRIKFHPSGRFLGTCC-----WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAF---GRVWD--L  351 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~---i~iwd--~  351 (471)
                      .+..++.+||++++|-+-     ..=++++-|+.+++.+....  .+....++|.+|++.|+-...|..   =+||-  +
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~  207 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL  207 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence            466778888888777543     33469999999987654322  234567899998886665544332   23332  2


Q ss_pred             CC----CeeEEEecccCcCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCccchheecccCCCccceeeccccceeeee
Q psy11350        352 RT----GRCIMFLEGHLKSVFSVDFSPDGYHLATGSED---NAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVL  424 (471)
Q Consensus       352 ~~----~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  424 (471)
                      .+    .+.+..-... .--.++.-+.+.++|+....|   +.+++.+.+.......+..+.+.+...-.-.....+.+.
T Consensus       208 gt~~~~d~lvyeE~d~-~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~  286 (682)
T COG1770         208 GTPGSSDELVYEEKDD-RFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYIL  286 (682)
T ss_pred             CCCCCcceEEEEcCCC-cEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEE
Confidence            22    1222222211 122333334455666554433   347777777766655554454443333222223333333


Q ss_pred             cccCCCcccccchhh----hcccccceeeecccceeeeecCCeEEEeec
Q psy11350        425 ESLNPGIGNIISSAL----KEQVEPIPLLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       425 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                      .........++....    ...-..++..++..-..|+--.++|.+..+
T Consensus       287 sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR  335 (682)
T COG1770         287 SNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLER  335 (682)
T ss_pred             ecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEec
Confidence            333333334443333    111123344444455556655666655543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.03  E-value=19  Score=33.00  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=61.1

Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe------CCCeEEEEeCCCCeeEEEecc-----cCcCEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG------LDAFGRVWDLRTGRCIMFLEG-----HLKSVFSV  370 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~------~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~~  370 (471)
                      ..|++||..+.+-...-.+-.+.|+++.|..+.++++.|.      ....+..||+.+..- ..+.+     -.++|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4599999887665544445567899999987777777764      345688899877643 23333     23678888


Q ss_pred             EEcC-CC-CEEEEEe-CC--CcEEEEECCCccch
Q psy11350        371 DFSP-DG-YHLATGS-ED--NAVKIWDLRKRRLL  399 (471)
Q Consensus       371 ~~sp-~~-~~l~s~s-~d--g~i~iwd~~~~~~~  399 (471)
                      .+.. |+ ++.+.|. .+  ..|..||-.+-..+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence            7754 33 3444443 23  34667765544433

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.83  E-value=60  Score=32.55  Aligned_cols=114  Identities=19%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             EEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCC---eEEEEEeCCCCEEEEEeC-------------CCeEEEE
Q psy11350        286 IKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP---VYCMSFQGDGSVVATGGL-------------DAFGRVW  349 (471)
Q Consensus       286 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~l~t~~~-------------dg~i~iw  349 (471)
                      +...++|.+++...  +.+..+|+- |+.+.........   -..+...|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            56677888776555  788888885 5555444322211   346778889998887771             1135555


Q ss_pred             eCCCCeeEEEec--ccC-------------------------cCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCccchhe
Q psy11350        350 DLRTGRCIMFLE--GHL-------------------------KSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       350 d~~~~~~~~~~~--~h~-------------------------~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      | .+|+.+..+.  .|-                         -.++++.+.+ ++.+|+|+-.-..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            6 6666554421  110                         1388999999 555666655455788888888876654


Q ss_pred             ec
Q psy11350        402 CT  403 (471)
Q Consensus       402 ~~  403 (471)
                      +.
T Consensus       309 lg  310 (477)
T PF05935_consen  309 LG  310 (477)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.52  E-value=34  Score=29.55  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=62.1

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe----ccc-CcCEEEEEEcC
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL----EGH-LKSVFSVDFSP  374 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~----~~h-~~~v~~~~~sp  374 (471)
                      .+|.-..+|.++.+++..+. ..+.-..++  .|+.-|+.++...+++.-|..+.....++    .+. -..++-+.|- 
T Consensus       109 ~egvaf~~d~~t~~~lg~~~-y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-  184 (262)
T COG3823         109 KEGVAFKYDADTLEELGRFS-YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-  184 (262)
T ss_pred             ccceeEEEChHHhhhhcccc-cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence            37788889988877765543 223333444  35666777766667777776655433322    221 1234445564 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|...|-.-.+..|...|..+|+.+.|+.
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~wid  213 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWID  213 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEE
Confidence            66766666666677778889999888775

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=80.45  E-value=85  Score=33.45  Aligned_cols=137  Identities=12%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCC----CccEEEEEeCCCcEEEEeC----CCCcceeeec-----C
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG----AVCSLASCAQDGSVKLWSL----DKDTPLANLE-----G  239 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~----~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~-----~  239 (471)
                      |+.+.+||..++...+.+......|..+..-....+.    ...+|+.+ ....+.++-+    .+++. ..+.     .
T Consensus       101 dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~El-s~fnTgl~vs  178 (1263)
T COG5308         101 DNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGEL-SLFNTGLVVS  178 (1263)
T ss_pred             CCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEecccccee-EEEecceEEe
Confidence            7889999998776665555444455555443222110    00011111 1122333322    12211 1111     1


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCC-CeEEec-------------------------cccccccCCCCcceEEEEECCCCC
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWD-HSWRLD-------------------------TPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d-~~~~~~-------------------------~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      -.+..|.|+.-+.+|+.+++|-.| +.|.+.                         -|..-..+-.+..|..++......
T Consensus       179 vqGinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsRg  258 (1263)
T COG5308         179 VQGINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSRG  258 (1263)
T ss_pred             ccCceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccccc
Confidence            122368888888899999999888 555551                         011111122234677888887777


Q ss_pred             EEEEEecCCeEEEEECCC
Q psy11350        294 FLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~  311 (471)
                      .|.+-+....|+-|.+..
T Consensus       259 ~ly~Lr~kS~Vray~itk  276 (1263)
T COG5308         259 LLYVLRKKSAVRAYSITK  276 (1263)
T ss_pred             ceeeecccceeeeEeeec
Confidence            788888788888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	471
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-27
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-16
2h9l_A	329	Wdr5delta23 Length = 329		9e-20
2h9l_A	329	Wdr5delta23 Length = 329		9e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		9e-16
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-15
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-15
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-15
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-12
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-14
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-13
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-13
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-12
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-12
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-12
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-12
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-12
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-12
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-12
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-12
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		6e-12
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-12
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-12
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-11
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-11
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-11
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-11
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-10
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-10
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-10
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-08
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-07
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-06
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		7e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		8e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 140/277 (50%), Gaps = 25/277 (9%)
Query: 131 RNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF 190
           RN +L + LT         G +  +   +FSPD Q +A+AS     KLW     +L+QT 
Sbjct: 127 RNGQLLQTLT---------GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 176
Query: 191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF 250
            GH  +V  + F P   +G   ++AS + D +VKLW+ +    L  L GH    V  + F
Sbjct: 177 TGHSSSVWGVAFSP---DGQ--TIASASDDKTVKLWNRNGQL-LQTLTGHSS-SVRGVAF 229
Query: 251 HPSGRFLGTCCWDHSWRL----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 306
            P G+ + +   D + +L       L  L GH    V+ + F P G+ + +   D + +L
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKL 288
Query: 307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS 366
           W+ N GQ +    GH   V+ ++F  DG  +A+   D   ++W+ R G+ +  L GH  S
Sbjct: 289 WNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSS 346
Query: 367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT 403
           V+ V FSPDG  +A+ S+D  VK+W+ R  +LL+  T
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 382

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
           LE H    V  + F P G+ + +   D + +LW+ N GQ +    GH   V+ ++F  DG
Sbjct: 12  LEAHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG 69
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
             +A+   D   ++W+ R G+ +  L GH  SV  V FSPDG  +A+ S+D  VK+W+ R
Sbjct: 70  QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 395 KRRLLKWCT 403
             +LL+  T
Sbjct: 128 NGQLLQTLT 136

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 42  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 98
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 99  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 135
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 136 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 238 LKLWDYSKGKCLK 250

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 41  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 98
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 44  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 100
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 101 SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 137
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 138 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 240 LKLWDYSKGKCLK 252

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 43  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 100
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 16  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 72
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 73  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 109
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 110 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 151
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 211
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 212 LKLWDYSKGKCLK 224

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 15  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 72
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 20  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 76
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 77  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 113
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 114 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 216 LKLWDYSKGKCLK 228

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 19  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 76
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 37  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 93
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 94  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 130
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 131 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 172
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 233 LKLWDYSKGKCLK 245

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 36  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 93
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 25  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 81
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 82  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 118
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 119 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 160
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 220
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 221 LKLWDYSKGKCLK 233

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 24  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 81
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 21  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 77
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 78  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 114
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 115 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 156
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 216
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 217 LKLWDYSKGKCLK 229

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 20  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 77
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 26  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 82
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 83  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 119
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 120 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 222 LKLWDYSKGKCLK 234

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 25  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 82
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 26  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 82
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 83  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 119
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 120 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 222 LKLWDYSKGKCLK 234

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 25  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 82
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 20  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 76
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 77  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 113
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 114 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 216 LKLWDYSKGKCLK 228

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 19  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 76
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 26  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 82
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 83  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 119
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 120 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 222 LKLWDYSKGKCLK 234

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 25  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 82
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 19  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 75
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 76  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 112
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 113 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 154
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 214
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 215 LKLWDYSKGKCLK 227

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 18  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 75
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 23  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 80  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G  +     H  PV  +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 219 LKLWDYSKGKCLK 231

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKF 288
           +  L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +
Sbjct: 19  MFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW 76
Query: 289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
                 L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           WD++TG C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 23  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 80  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 219 LKLWDYSKGKCLK 231

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 22  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 79
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 23  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 80  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 219 LKLWDYSKGKCLK 231

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +   
Sbjct: 22  LAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 79
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A++S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 23  AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 80  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G  +     H  PV  +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 219 LKLWDYSKGKCLK 231

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKF 288
           +  L GH    VS +KF P+G +L +   D   ++    D      + GH+   +S + +
Sbjct: 19  MFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW 76
Query: 289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
                 L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           WD++TG C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G T+ +S   FSP+ + +A +S   L K+W   + +  +T  GH   +  + +    S+
Sbjct: 23  AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSD 79
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             +  L S + D ++K+W +     L  L+GH  +                CC       
Sbjct: 80  SNL--LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--------------CC------- 116
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                              F+P    + +  +D S R+WD+  G+ +     H  PV  +
Sbjct: 117 ------------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
            F  DGS++ +   D   R+WD  +G+C+   ++     V  V FSP+G ++   + DN 
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 388 VKIWDLRKRRLLK 400
           +K+WD  K + LK
Sbjct: 219 LKLWDYSKGKCLK 231

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL----DTPL-ANLEGHEPFRVSRIKFHPS 291
           L GH    VS +KF P+G +L     D   ++    D      + GH+   +S + +   
Sbjct: 22  LAGHTK-AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSD 79
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
              L +   D + ++WD++ G+ +   +GH   V+C +F    +++ +G  D   R+WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           +TG+C+  L  H   V +V F+ DG  + + S D   +IWD    + LK
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPF-----RVSRIK 287
           P   LEGH  F VS +    +G F  +  WDHS RL   L N +    F      V  + 
Sbjct: 59  PDRRLEGHSAF-VSDVALSNNGNFAVSASWDHSLRLWN-LQNGQCQYKFLGHTKDVLSVA 116
Query: 288 FHPSGRFLGTCCWDHSWRLWDL-NQGQEVLHQEGHGKPVYCMSFQG--DGSVVATGGLDA 344
           F P  R + +   D++ R+W++  +    L +  H   V C+ F    D  V+ +GG D 
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 345 FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
             +VWDL TGR +  L+GH   V SV  SPDG   A+  +D   ++WDL K   L
Sbjct: 177 LVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 30/269 (11%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G T  +   SF    + +A+ S     KLW     E ++T  GHD NV ++   P     
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH- 206
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---W 266
               + S ++D ++K+W +     +    GH  + V  ++ +  G  + +C  D +   W
Sbjct: 207 ----IVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 267 RLDTPLANLEGHEPFRVSR-IKFHPS--------------------GRFLGTCCWDHSWR 305
            + T     E  E   V   I + P                     G FL +   D + +
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK 365
           +WD++ G  ++   GH   V  + F   G  + +   D   RVWD +  RC+  L  H  
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 366 SVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
            V S+DF     ++ TGS D  VK+W+ R
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 33/228 (14%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDTP--LANLEGHEPFRVSRIKFHPS 291
           L GH    V+R+ FHP    + +   D +   W  +T      L+GH    V  I F  S
Sbjct: 104 LSGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHS 161
Query: 292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL 351
           G+ L +C  D + +LWD    + +    GH   V  +S   +G  + +   D   ++W++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW---------DLRKRRLLKWC 402
           +TG C+    GH + V  V  + DG  +A+ S D  V++W         +LR+ R +  C
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 403 TQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLL 450
               P                 ES    I     S  K+  +P P LL
Sbjct: 282 ISWAP-----------------ESSYSSISEATGSETKKSGKPGPFLL 312

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 126/301 (41%), Gaps = 40/301 (13%)
Query: 126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE 185
             R + +    K   +L+   S   D    S C FSPD + +AT +   L ++W +   +
Sbjct: 98  VARLSDDSAANKDPENLNTSSSPSSDLYIRSVC-FSPDGKFLATGAEDRLIRIWDIENRK 156
Query: 186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRV 245
           +V   +GH+ ++ ++++ P   +     L S + D +V++W L   T   +L       V
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDK-----LVSGSGDRTVRIWDL--RTGQCSLTLSIEDGV 209
Query: 246 SRIKFHPS-GRFLGTCCWDHS---W---------RLDTPLANLEGHEPFRVSRIKFHPSG 292
           + +   P  G+++     D +   W         RLD+   +  GH+   V  + F   G
Sbjct: 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDG 268
Query: 293 RFLGTCCWDHSWRLWDL------------NQGQEVLHQEGHGKPVYCMSFQGDGSVVATG 340
           + + +   D S +LW+L            N G   +   GH   V  ++   +   + +G
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328
Query: 341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSV------DFSPDGYHLATGSEDNAVKIWDLR 394
             D     WD ++G  ++ L+GH  SV SV         P+    ATGS D   +IW  +
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Query: 395 K 395
           K
Sbjct: 389 K 389

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 286 IKFHPSGRFLGTCCWDHS--WRLWD------------LNQGQEVLHQEGHGKP---VYCM 328
           +KF   G +L T C   +  +R+ D             N+  E L+          +  +
Sbjct: 70  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV 388
            F  DG  +ATG  D   R+WD+   + +M L+GH + ++S+D+ P G  L +GS D  V
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 389 KIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSA 438
           +IWDLR  +    C+  L    GVT++          +++PG G  I++ 
Sbjct: 190 RIWDLRTGQ----CSLTLSIEDGVTTV----------AVSPGDGKYIAAG 225

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 16/225 (7%)
Query: 131 RNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF 190
           +N+ +     S++++      T  +S CSF+     + TAS  G C LW V   +L+Q+F
Sbjct: 139 KNENMAAKKKSVAMH------TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 191 RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF 250
            GH  +V  ++  P  +     +  S   D    +W +     +   E HE   V+ +++
Sbjct: 193 HGHGADVLCLDLAPSETGN---TFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRY 248
Query: 251 HPSGRFLGTCCWDHSWRLDTPLANLE----GHEP--FRVSRIKFHPSGRFLGTCCWDHSW 304
           +PSG    +   D + RL    A+ E      E   F  S + F  SGR L     D++ 
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI 308
Query: 305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW 349
            +WD+ +G  V    GH   V  +    DG+   +G  D   RVW
Sbjct: 309 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD--GSVVATG 340
           +S   F  S   + T   D +  LWD+  GQ +    GHG  V C+       G+   +G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR 397
           G D    VWD+R+G+C+   E H   V SV + P G   A+GS+D   +++DLR  R
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 20/244 (8%)
Query: 163 DSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIEF-HPLPSEGAVCSLASCAQ 219
           +S+ V T S   L K+W   +   +L  +  GH   V +++  H LP        AS + 
Sbjct: 47  NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA------ASSSL 100
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-------PL 272
           D  ++LW L+    + +++   P     + F P  ++L T    H  +++          
Sbjct: 101 DAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESGKKE 157
Query: 273 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG 332
            +L+    F +S I + P G++L +   D    ++D+  G+ +   EGH  P+  ++F  
Sbjct: 158 YSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           D  ++ T   D + +++D++       L GH   V +V F PD  H  + S D +VK+WD
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 393 LRKR 396
           +  R
Sbjct: 277 VGTR 280

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 44/174 (25%)
Query: 267 RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV----------- 315
           RLD   + LEGH+   V  +    +     +   D   RLWDL  G+++           
Sbjct: 69  RLDLQWS-LEGHQ-LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126
Query: 316 -------------------------------LHQEGHGKPVYCMSFQGDGSVVATGGLDA 344
                                             +  GK +  +++  DG  +A+G +D 
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 345 FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
              ++D+ TG+ +  LEGH   + S+ FSPD   L T S+D  +KI+D++   L
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 214 LASCAQDGSVKLWSLDKDTPLANL---EGHEPFRVSRIKFHPSGRFLG-------TCCWD 263
           LASC  D  +++W  + D+ +      EGH+   V ++ + P G +L        TC W 
Sbjct: 31  LASCGGDRRIRIWGTEGDSWICKSVLSEGHQ-RTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 264 HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE---VLHQEG 320
            +      +  LEGHE   V  + + PSG  L TC  D S  +W++++  E   V     
Sbjct: 90  KNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVW--DLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
           H + V  + +     ++A+   D   +++  +     C   LEGH  +V+S+ F P G  
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 379 LATGSEDNAVKIW 391
           LA+ S+D  V+IW
Sbjct: 209 LASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ---EGHGKPVYCM 328
           L  +  H   R   + ++P+G  L +C  D   R+W       +      EGH + V  +
Sbjct: 8   LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTG--RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
           ++   G+ +A+   DA   +W        C+  LEGH   V SV ++P G  LAT S D 
Sbjct: 68  AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 387 AVKIWDL 393
           +V +W++
Sbjct: 128 SVWVWEV 134

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 27/233 (11%)
Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
           K+W     E + T  GH   V  +  H          + S ++D ++++W ++    L  
Sbjct: 182 KVWNAETGECIHTLYGHTSTVRCMHLHEK-------RVVSGSRDATLRVWDIETGQCLHV 234
Query: 237 LEGHEPFRVSRIK-FHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHP 290
           L GH    V+ ++     GR + +  +D   ++     +T L  L+GH   RV  ++F  
Sbjct: 235 LMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF-- 287
Query: 291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD 350
            G  + +   D S R+WD+  G  +    GH      M  + +  ++ +G  D+  ++WD
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 345
Query: 351 LRTGRCIMFLEG---HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           ++TG+C+  L+G   H  +V  + F+ +   + T S+D  VK+WDL+    ++
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +  C+ + D  +  +ASW    +LW V   E  Q F GH  +V +++     S  
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++K+W++ K   LA L GH  + VS+++  P                 
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                   +E      +    +G        D   + W+LNQ Q      GH   +  ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+++A+ G D    +W+L   + +  L      VFS+ FSP+ Y LA  +    +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
           ++ L  + L+
Sbjct: 262 VFSLDPQYLV 271

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
           LEGH  +  S          L +   D    SW+L         P+ + +GH    V   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
                G +  +  WD + RLWD+  G+      GH   V  +      S++ +G  D   
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
           +VW ++ G+C+  L GH   V  V   P      D   + +   D  VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +  C+ + D  +  +ASW    +LW V   E  Q F GH  +V +++     S  
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++K+W++ K   LA L GH  + VS+++  P                 
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                   +E      +    +G        D   + W+LNQ Q      GH   +  ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+++A+ G D    +W+L   +    L      VFS+ FSP+ Y LA  +    +K
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
           ++ L  + L+
Sbjct: 262 VFSLDPQYLV 271

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 13/147 (8%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLWDLNQ--GQEVLHQEGHGKPVYCMS 329
           LEGH  +  S          L +   D    SW+L   +Q  G  V   +GH   V   +
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+   +   D   R+WD+ TG       GH   V SVD       + +GS D  +K
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 390 IWDLRKRRLLK------WCTQ--LLPN 408
           +W ++ + L        W +Q  ++PN
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPN 159

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +  C+ + D  +  +ASW    +LW V   E  Q F GH  +V +++     S  
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++K+W++ K   LA L GH  + VS+++  P                 
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                   +E      +    +G        D   + W+LNQ Q      GH   +  ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+++A+ G D    +W+L   + +  L      VFS+ FSP+ Y LA  +    +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
           ++ L  + L+
Sbjct: 262 VFSLDPQYLV 271

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
           LEGH  +  S          L +   D    SW+L         P+ + +GH    V   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
                G +  +  WD + RLWD+  G+      GH   V  +      S++ +G  D   
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
           +VW ++ G+C+  L GH   V  V   P      D   + +   D  VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +  C+ + D  +  +ASW    +LW V   E  Q F GH  +V +++     S  
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++K+W++ K   LA L GH  + VS+++  P                 
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                   +E      +    +G        D   + W+LNQ Q      GH   +  ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+++A+ G D    +W+L   + +  L      VFS+ FSP+ Y LA  +    +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
           ++ L  + L+
Sbjct: 262 VFSLDPQYLV 271

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
           LEGH  +  S          L +   D    SW+L         P+ + +GH    V   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
                G +  +  WD + RLWD+  G+      GH   V  +      S++ +G  D   
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
           +VW ++ G+C+  L GH   V  V   P      D   + +   D  VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +  C+ + D  +  +ASW    +LW V   E  Q F GH  +V +++     S  
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 121
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++K+W++ K   LA L GH  + VS+++  P                 
Sbjct: 122 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 158
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                   +E      +    +G        D   + W+LNQ Q      GH   +  ++
Sbjct: 159 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+++A+ G D    +W+L   + +  L      VFS+ FSP+ Y LA  +    +K
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 261
Query: 390 IWDLRKRRLL 399
           ++ L  + L+
Sbjct: 262 VFSLDPQYLV 271

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
           LEGH  +  S          L +   D    SW+L         P+ + +GH    V   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 71
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
                G +  +  WD + RLWD+  G+      GH   V  +      S++ +G  D   
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
           +VW ++ G+C+  L GH   V  V   P      D   + +   D  VK W+L + ++
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +  C+ + D  +  +ASW    +LW V   E  Q F GH  +V +++     S  
Sbjct: 57  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM- 115
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++K+W++ K   LA L GH  + VS+++  P                 
Sbjct: 116 ----IISGSRDKTIKVWTI-KGQCLATLLGHNDW-VSQVRVVP----------------- 152
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                   +E      +    +G        D   + W+LNQ Q      GH   +  ++
Sbjct: 153 --------NEKADDDSVTIISAGN-------DKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
              DG+++A+ G D    +W+L   + +  L      VFS+ FSP+ Y LA  +    +K
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIK 255
Query: 390 IWDLRKRRLL 399
           ++ L  + L+
Sbjct: 256 VFSLDPQYLV 265

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLD-------TPLANLEGHEPFRVSRI 286
           LEGH  +  S          L +   D    SW+L         P+ + +GH    V   
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI-VQDC 65
Query: 287 KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
                G +  +  WD + RLWD+  G+      GH   V  +      S++ +G  D   
Sbjct: 66  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 347 RVWDLRTGRCIMFLEGHLKSVFSVDFSP------DGYHLATGSEDNAVKIWDLRKRRL 398
           +VW ++ G+C+  L GH   V  V   P      D   + +   D  VK W+L + ++
Sbjct: 126 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 49/245 (20%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
            S D Q   + SW G  +LW +      + F GH  +V ++ F     +     + S ++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-----IVSASR 492
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHE 279
           D ++KLW+                             LG C +  S          EG E
Sbjct: 493 DRTIKLWNT----------------------------LGECKYTIS----------EGGE 514
Query: 280 PFR--VSRIKFHPSGR--FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS 335
             R  VS ++F P+     + +  WD + ++W+L+  +      GH   V  ++   DGS
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 336 VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           + A+GG D    +WDL  G+ +  LE +   + ++ FSP+ Y L   +E + +KIWDL  
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATE-HGIKIWDLES 632
Query: 396 RRLLK 400
           + +++
Sbjct: 633 KSIVE 637

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
           +T RGH   + A+ +           L S +QDG + +W    D+   N     P R S 
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIW----DSYTTNKVHAIPLRSSW 110
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
           +    + PSG ++     D+       + NL+  E   RVSR     +G     RFL   
Sbjct: 111 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
              T   D +  LWD+  GQ+     GH   V  +S   D  +  +G  DA  ++WD+R 
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
           G C     GH   + ++ F P+G   ATGS+D   +++DLR
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           V  +   P  R   +   D S +LWD+ +G       GH   +  + F  +G+  ATG  
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 257
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           DA  R++DLR  + +M    +  +  + SV FS  G  L  G +D    +WD  K
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
           +T RGH   + A+ +           L S +QDG + +W    D+   N     P R S 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
           +    + PSG ++     D+       + NL+  E   RVSR     +G     RFL   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
              T   D +  LWD+  GQ+     GH   V  +S   D  +  +G  DA  ++WD+R 
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
           G C     GH   + ++ F P+G   ATGS+D   +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           V  +   P  R   +   D S +LWD+ +G       GH   +  + F  +G+  ATG  
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           DA  R++DLR  + +M    +  +  + SV FS  G  L  G +D    +WD  K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
           +T RGH   + A+ +           L S +QDG + +W    D+   N     P R S 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRL-----LVSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
           +    + PSG ++     D+       + NL+  E   RVSR     +G     RFL   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
              T   D +  LWD+  GQ+     GH   V  +S   D  +  +G  DA  ++WD+R 
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
           G C     GH   + ++ F P+G   ATGS+D   +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           V  +   P  R   +   D S +LWD+ +G       GH   +  + F  +G+  ATG  
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           DA  R++DLR  + +M    +  +  + SV FS  G  L  G +D    +WD  K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 150  GDTRPISYCSFSPDSQHVATASWSGLC-KLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G    I YC FSP   H+A  + S  C +LW +     V   RGH   V  + F P  S 
Sbjct: 838  GHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS- 895
Query: 209  GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
                S  + + D ++++W   K    + +   +   V                +  +  +
Sbjct: 896  ----SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV---------------VFQENETM 936
Query: 269  DTPLANLEGHEPF--RVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQE 314
               + N+ G +    +  +I + P  + +  CC             D + ++ +L   + 
Sbjct: 937  VLAVDNIRGLQLIAGKTGQIDYLPEAQ-VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995
Query: 315  VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
                 GH K V  + F  DG  + +   D+  +VW+ +TG  + FL+ H ++V       
Sbjct: 996  FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ 1054
Query: 375  DGYHLATGSEDNAVKIWDLRKRRL 398
            D   L + S D  VK+W++   R+
Sbjct: 1055 DS-RLLSWSFDGTVKVWNVITGRI 1077

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 132/371 (35%), Gaps = 67/371 (18%)
Query: 152  TRPISYCSFSPDSQHV--ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
            +  ++ C F+  S H+  AT S     KLW + + E   T  GH  +V    F P     
Sbjct: 699  SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-- 756
Query: 210  AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---- 265
                LASC+ DG+++LW +       ++     F  S          +  C W       
Sbjct: 757  ---LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813
Query: 266  ----------WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
                      + + T   LA +       +    F P           +   LW+++   
Sbjct: 814  IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 873
Query: 314  EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT--GRCIMFLEGHLKSVFS-- 369
            +V    GH   V+ + F  DGS   T   D   RVW+ +       + L+  +  VF   
Sbjct: 874  KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933
Query: 370  ----------------------VDFSPDGY-----------HLATGSEDNAVKIWDLRKR 396
                                  +D+ P+             ++A G ED A+KI +L   
Sbjct: 934  ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 397  RLL------KWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGN-IISSALKEQVEPIPLL 449
            R+       K   + +  +    +L++     V++  N   G+ +   A +E V+   LL
Sbjct: 994  RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053
Query: 450  LDIQKLTFKFD 460
             D + L++ FD
Sbjct: 1054 QDSRLLSWSFD 1064

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
           H   VY   F  DG  +A+ G D   +V+   TG  ++ ++ H   V    FS D  ++A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 381 TGSEDNAVKIWDLRKRRLL 399
           T S D  VKIWD    +L+
Sbjct: 674 TCSADKKVKIWDSATGKLV 692

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 39/264 (14%)
Query: 150  GDTRPISYCSFSPDSQHVATASWSGLC-KLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G    I YC FSP   H+A  + S  C +LW +     V   RGH   V  + F P  S 
Sbjct: 845  GHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS- 902
Query: 209  GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
                S  + + D ++++W   K    + +   +   V                +  +  +
Sbjct: 903  ----SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV---------------VFQENETM 943
Query: 269  DTPLANLEGHEPF--RVSRIKFHPSGRFLGTCCW------------DHSWRLWDLNQGQE 314
               + N+ G +    +  +I + P  + +  CC             D + ++ +L   + 
Sbjct: 944  VLAVDNIRGLQLIAGKTGQIDYLPEAQ-VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 1002
Query: 315  VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP 374
                 GH K V  + F  DG  + +   D+  +VW+ +TG  + FL+ H ++V       
Sbjct: 1003 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQ 1061
Query: 375  DGYHLATGSEDNAVKIWDLRKRRL 398
            D   L + S D  VK+W++   R+
Sbjct: 1062 DS-RLLSWSFDGTVKVWNVITGRI 1084

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 132/371 (35%), Gaps = 67/371 (18%)
Query: 152  TRPISYCSFSPDSQHV--ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
            +  ++ C F+  S H+  AT S     KLW + + E   T  GH  +V    F P     
Sbjct: 706  SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-- 763
Query: 210  AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---- 265
                LASC+ DG+++LW +       ++     F  S          +  C W       
Sbjct: 764  ---LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 820
Query: 266  ----------WRLDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
                      + + T   LA +       +    F P           +   LW+++   
Sbjct: 821  IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 880
Query: 314  EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT--GRCIMFLEGHLKSVFS-- 369
            +V    GH   V+ + F  DGS   T   D   RVW+ +       + L+  +  VF   
Sbjct: 881  KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 940
Query: 370  ----------------------VDFSPDGY-----------HLATGSEDNAVKIWDLRKR 396
                                  +D+ P+             ++A G ED A+KI +L   
Sbjct: 941  ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 397  RLL------KWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGN-IISSALKEQVEPIPLL 449
            R+       K   + +  +    +L++     V++  N   G+ +   A +E V+   LL
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1060
Query: 450  LDIQKLTFKFD 460
             D + L++ FD
Sbjct: 1061 QDSRLLSWSFD 1071

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLA 380
           H   VY   F  DG  +A+ G D   +V+   TG  ++ ++ H   V    FS D  ++A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 381 TGSEDNAVKIWDLRKRRLL 399
           T S D  VKIWD    +L+
Sbjct: 681 TCSADKKVKIWDSATGKLV 699

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
           +T RGH   + A+ +           L S +QDG + +W    D+   N     P R S 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRL-----LLSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
           +    + PSG ++     D+       + NL+  E   RVSR     +G     RFL   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
              T   D +  LWD+  GQ+     GH   V  +S   D  +  +G  DA  ++WD+R 
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
           G C     GH   + ++ F P+G   ATGS+D   +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           V  +   P  R   +   D S +LWD+ +G       GH   +  + F  +G+  ATG  
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           DA  R++DLR  + +M    +  +  + SV FS  G  L  G +D    +WD  K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 27/221 (12%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
           +T RGH   + A+ +           L S +QDG + +W    D+   N     P R S 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRL-----LLSASQDGKLIIW----DSYTTNKVHAIPLRSSW 99
Query: 248 I---KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEP-FRVSRIKFHPSG-----RFLG-- 296
           +    + PSG ++     D+       + NL+  E   RVSR     +G     RFL   
Sbjct: 100 VMTCAYAPSGNYVACGGLDNI----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 297 ---TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
              T   D +  LWD+  GQ+     GH   V  +S   D  +  +G  DA  ++WD+R 
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
           G C     GH   + ++ F P+G   ATGS+D   +++DLR
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           V  +   P  R   +   D S +LWD+ +G       GH   +  + F  +G+  ATG  
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 343 DAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           DA  R++DLR  + +M    +  +  + SV FS  G  L  G +D    +WD  K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 51/254 (20%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +S    S D Q   + SW G  +LW +      + F GH  +V ++ F     + 
Sbjct: 84  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ- 142
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++KLW+                             LG C +       
Sbjct: 143 ----IVSGSRDKTIKLWNT----------------------------LGVCKYT------ 164
Query: 270 TPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC 327
                 E H  + VS ++F P  S   + +C WD   ++W+L   +   +  GH   +  
Sbjct: 165 ---VQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL--ATGSED 385
           ++   DGS+ A+GG D    +WDL  G+ +  L+G    + ++ FSP+ Y L  ATG   
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGP-- 277
Query: 386 NAVKIWDLRKRRLL 399
            ++KIWDL  + ++
Sbjct: 278 -SIKIWDLEGKIIV 290

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 51/254 (20%)
Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G +  +S    S D Q   + SW G  +LW +      + F GH  +V ++ F     + 
Sbjct: 61  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ- 119
Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
               + S ++D ++KLW+                             LG C +       
Sbjct: 120 ----IVSGSRDKTIKLWNT----------------------------LGVCKYT------ 141
Query: 270 TPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYC 327
                 E H  + VS ++F P  S   + +C WD   ++W+L   +   +  GH   +  
Sbjct: 142 ---VQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 197
Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL--ATGSED 385
           ++   DGS+ A+GG D    +WDL  G+ +  L+G    + ++ FSP+ Y L  ATG   
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGP-- 254
Query: 386 NAVKIWDLRKRRLL 399
            ++KIWDL  + ++
Sbjct: 255 -SIKIWDLEGKIIV 267

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
           F P    V T  +SG  +LW       V++ +  +  V A +F    +   V S      
Sbjct: 21  FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
           D  +++++ +    + + E H P  +  I  HP+  ++ +           W+++W L+ 
Sbjct: 76  DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
                EGHE F V  + F+P       + C D + ++W L Q         G  + V  +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
            +    D   + T   D   ++WD +T  C+  LEGH+ +V    F P    + +GSED 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
            +KIW+    ++ K         WC    P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
           F P    V T  +SG  +LW       V++ +  +  V A +F    +   V S      
Sbjct: 21  FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
           D  +++++ +    + + E H P  +  I  HP+  ++ +           W+++W L+ 
Sbjct: 76  DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
                EGHE F V  + F+P       + C D + ++W L Q         G  + V  +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
            +    D   + T   D   ++WD +T  C+  LEGH+ +V    F P    + +GSED 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
            +KIW+    ++ K         WC    P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
           F P    V T  +SG  +LW       V++ +  +  V A +F    +   V S      
Sbjct: 21  FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
           D  +++++ +    + + E H P  +  I  HP+  ++ +           W+++W L+ 
Sbjct: 76  DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
                EGHE F V  + F+P       + C D + ++W L Q         G  + V  +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
            +    D   + T   D   ++WD +T  C+  LEGH+ +V    F P    + +GSED 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
            +KIW+    ++ K         WC    P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 32/270 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ 219
           F P    V T  +SG  ++W       V++ +  +  V A +F    +   V S      
Sbjct: 21  FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----D 75
Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC---------WDHSWRLDT 270
           D  +++++ +    + + E H P  +  I  HP+  ++ +           W+++W L+ 
Sbjct: 76  DFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133
Query: 271 PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCM 328
                EGHE F V  + F+P       + C D + ++W L Q         G  + V  +
Sbjct: 134 --QTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 329 SFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN 386
            +    D   + T   D   ++WD +T  C+  LEGH+ +V    F P    + +GSED 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 387 AVKIWDLRKRRLLK---------WCTQLLP 407
            +KIW+    ++ K         WC    P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 113/262 (43%), Gaps = 38/262 (14%)
Query: 140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGA 199
           TS  +YC Q              D Q + +       K+W     E  +   GH  +V  
Sbjct: 132 TSKGVYCLQY-------------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 178
Query: 200 IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGT 259
           +++     E  + + +S   D +V++W ++    L  L  H    V  ++F+     + T
Sbjct: 179 LQY----DERVIITGSS---DSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFNNG--MMVT 228
Query: 260 CCWDHS---WRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ 311
           C  D S   W + +P        L GH    V+ + F    +++ +   D + ++W+ + 
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDF--DDKYIVSASGDRTIKVWNTST 285
Query: 312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD 371
            + V    GH + + C+ ++    +V +G  D   R+WD+  G C+  LEGH + V  + 
Sbjct: 286 CEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 372 FSPDGYHLATGSEDNAVKIWDL 393
           F  D   + +G+ D  +K+WDL
Sbjct: 344 F--DNKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG 382
           K VYC+ +  D   + +G  D   ++WD  T  C   L GH  SV  + +  D   + TG
Sbjct: 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITG 189
Query: 383 SEDNAVKIWDLRKRRLL 399
           S D+ V++WD+    +L
Sbjct: 190 SSDSTVRVWDVNTGEML 206

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR 247
           +T +GH   V ++++ P  +      + S +QDG + +W+         ++ H P+ V  
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNW-----IVSASQDGRLIVWNALTSQKTHAIKLHCPW-VME 113
Query: 248 IKFHPSGRFLGTCCWDHSWRL-----------DTPLAN-LEGHEPFRVSRIKFHPSGRF- 294
             F P+G+ +     D +  +           + P++  L GH+ +  S  ++ P     
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-ASSCQYVPDQETR 172
Query: 295 LGTCCWDHSWRLWDLNQGQEVL-----HQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRV 348
           L T   D +  LWD+  GQ +         GH   V  +S    + ++  +G  D   R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 349 WDLR-TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           WDLR T R +    GH   + SV F PDG    TGS+D   +++D+R    L+
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query: 221 GSVKLWSLD---KDTPLANLEG-HEPFRVSRIKFHPSGRFL---GTCCWDHSWRLDTPL- 272
           G VK+W +      +P++ L+  +    +   K  P G  L   G       W L  P  
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 273 ---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
              A L    P     +   P  +   +CC D +  +WDL+    V   +GH     C+ 
Sbjct: 132 RIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH--LKSVFSVDFSPDGYHLATGSEDNA 387
              DG+ + TGGLD   R WDLR GR    L+ H     +FS+ + P G  LA G E + 
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGR---QLQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247
Query: 388 VKIWDLRK 395
           V++  + K
Sbjct: 248 VEVLHVNK 255

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 306 LWDLNQGQEVLHQE--GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH 363
           +WDL      +  E        Y ++   D  V  +   D    VWDL     +   +GH
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
                 +D S DG  L TG  DN V+ WDLR+ R L+
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 135 LQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD 194
           L+ H+TS+ I C Q  D              +V T +   + +++     + +    GHD
Sbjct: 117 LRGHMTSV-ITCLQFED-------------NYVITGADDKMIRVYDSINKKFLLQLSGHD 162
Query: 195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP-FRVSRIKFHPS 253
             V A+++    + G +  L S + D +V++W + K       EGH    R   I  + +
Sbjct: 163 GGVWALKY----AHGGI--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 254 GRFLGTCCWD---HSWRL-------------DTPLANLEGHE-PFRVSRIKFHPS----- 291
            +++ T   D   H W+L             D PL      E P+ V  ++ H +     
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 292 ---GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRV 348
              G  + +  +D++  +WD+ Q + +    GH   +Y   +  +     +  +D   R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           WDL  G  +  L+GH   V  +  S     L + + D +++ WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
           L GH    ++ ++F  +  ++ T   D   R++D    + +L   GH   V+ + +   G
Sbjct: 117 LRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS--PDGYHLATGSEDNAVKIWD 392
            ++ +G  D   RVWD++ G C    EGH  +V  +D     +  ++ TGS DN + +W 
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 393 LRK 395
           L K
Sbjct: 234 LPK 236

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
           L GH    ++ ++F  +  ++ T   D   R++D    + +L   GH   V+ + +   G
Sbjct: 117 LRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF--SPDGYHLATGSEDNAVKIWD 392
            ++ +G  D   RVWD++ G C    EGH  +V  +D     +  ++ TGS DN + +W 
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 393 LRK 395
           L K
Sbjct: 234 LPK 236

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 106/262 (40%), Gaps = 31/262 (11%)
Query: 160 FSPDSQHVATASWSGLCKLWTV---PECELVQTFRGHDCNVGAIEFHPLPSE-------- 208
           +S D Q + T  ++G   L +V    E EL+  F G D  +  +       E        
Sbjct: 44  WSKDDQWLGTVVYTGQGFLNSVCYDSEKELL-LFGGKDTXINGVPLFATSGEDPLYTLIG 102
Query: 209 --GAVCSLASCAQDGSVKLWSLDKDTPL-------ANLEGHEP-FRVSRIKFHPSGRFLG 258
             G VCSL+   QDG V   S DK   +        NL+ H      +++      +FL 
Sbjct: 103 HQGNVCSLS--FQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFL- 159
Query: 259 TCCWDHS---WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV 315
           T   D +   W+ D  +    G     V  +     G F+ +C  D   +L D + G  +
Sbjct: 160 TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVL 218
Query: 316 LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD 375
              EGH   VYC+    +G +V+ G  D   R+W    G     +     S++SVD   +
Sbjct: 219 RTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSN 277
Query: 376 GYHLATGSEDNAVKIWDLRKRR 397
           G  +  GS DN V+I+   K R
Sbjct: 278 G-DIIVGSSDNLVRIFSQEKSR 298

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 281 FRVSRIKFHP--SGRFLGTCCWDHSWRLWDLN--QGQEVLHQEGHGKPVYCMSFQGDGSV 336
           + V  ++++P  +G F  +  +D + ++WD N  Q  +V + E      +         +
Sbjct: 100 YSVETVQWYPHDTGMFTSSS-FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL 158
Query: 337 VATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD-GYHLATGSEDNAVKIWDLRK 395
           VA G      ++ DL++G C   L+GH + + +V +SP   Y LAT S D+ VK+WD+R+
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 292 GRFLGTCCWDHSWRLWDL-NQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW 349
           G FL    W +  R W++ + GQ +   Q+ H  PV  + +  DGS V T   D   ++W
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 350 DLRTGRCIMFLEGHLKSVFSVDF--SPDGYHLATGSEDNAVKIWDLRKRRLLK------- 400
           DL + + I   + H   V ++ +  +P+   + TGS D  +K WD R    +        
Sbjct: 114 DLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Query: 401 -WCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKF 459
            +C  ++     V +    L +  LE+  P     I S LK Q   + +  D Q     F
Sbjct: 173 CYCADVIYPMAVVATAERGLIVYQLEN-QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 34/255 (13%)
Query: 149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
            G    +S  + S ++    ++SW    +LW +      + F GH   V ++ F P   +
Sbjct: 73  TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
                + S   +  +KLW         N+ G   F  +  + H          W    R 
Sbjct: 133 -----ILSAGAEREIKLW---------NILGECKFSSAEKENHSD--------WVSCVR- 169
Query: 269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
                    + P   S  K  P   +  +  WD   ++W+ N  Q     + H   V  +
Sbjct: 170 ---------YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHL 219
Query: 329 SFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV 388
           S   +G  +ATGG D    +WD+              ++  + F+P    +A G+ D  V
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGV 278
Query: 389 KIWDLRKRRLLKWCT 403
           KI++L  +     CT
Sbjct: 279 KIFNLMTQSKAPVCT 293

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 305 RLWDL----NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGRC-IM 358
           ++WD     N+  ++L   G   P++C+    +   VVATGG D    +WD+R G   + 
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 359 FLEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWD 392
            L+ H   ++ V F P +  HL T SED ++  WD
Sbjct: 275 LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           +S + +   G +L         +LWD+ Q + + +   H   V  +S+  +  ++++G  
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 207
Query: 343 DAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
                  D+R     +  L GH + V  + ++PDG HLA+G  DN V +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           +S + +   G +L         +LWD+ Q + + +   H   V  +S+  +  ++++G  
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 218
Query: 343 DAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
                  D+R     +  L GH + V  + ++PDG HLA+G  DN V +W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
           TP   L GH    +S ++F+ + + L +   D + R+W    G       GH + +   S
Sbjct: 238 TPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296
Query: 330 FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK 389
           + GD  V++   +D   R+W L+    +         +F+   S DG   A    D  V 
Sbjct: 297 WVGDDKVISCS-MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355
Query: 390 IWDLRK 395
           ++DL+K
Sbjct: 356 VYDLKK 361

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 283 VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL 342
           +S + +   G +L         +LWD+ Q + + +   H   V  +S+  +  ++++G  
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR 127
Query: 343 DAFGRVWDLRTGRC-IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
                  D+R     +  L GH + V  + ++PDG HLA+G  DN V +W
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 276 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS 335
           E  E   V+ +K+   G FL     +    ++D+    ++    GH   V C+S+  +  
Sbjct: 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRH 187
Query: 336 VVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
           V+++G         D+R     I  L+GH   V  + +  DG  LA+G  DN V+IWD R
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 41/277 (14%)
Query: 153 RPISYCSFSPDSQHVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVGAIEFHPL 205
           + I   ++ P +  +A  S+     +W   E        +L+    GH+  V  + +   
Sbjct: 59  KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW--- 115
Query: 206 PSEGAVCSLASCAQDGSVKLWSLDKDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCC 261
            ++G    LA+C++D SV +W  D+       ++ L+ H    V  + +HPS   L +  
Sbjct: 116 SNDGYY--LATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSS 172
Query: 262 WDHSWRLDTP-------LANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLWDLNQGQ 313
           +D + R+          +A L GHE    S       G F L +   D + R+W      
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 314 EVLHQEG---------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
           E   QE          H + VY +++  +G ++A+ G D    V++   G   +F +  L
Sbjct: 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRAL 291
Query: 365 -KSVFSVD----FSPDGYH-LATGSEDNAVKIWDLRK 395
              V+ ++       +G   LATG +D  V  W L K
Sbjct: 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
           GH +P+  + +  +G ++ +   D+   VW    G  +  L+GH  +++S+D      + 
Sbjct: 30  GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 380 ATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESL--NPGIGNI 434
            TGS D ++K+WD+   + +      +P      S   + ++ +L+++  NPG  NI
Sbjct: 90  VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-------GHLKSVFSVDFS 373
           H K V+ + +  DGS+ A+ G D    +++   G      E        H  SVF + +S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 374 PDGYHLATGSEDNAVKIWD---LRKRRLLKWCTQLLPNSIGVT----SLLTDLYIDVLES 426
           PDG  +A+ S D  +KIW+   L+  + +   T++    +G+     +L++      +  
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 427 LNPGIGNI 434
           +NP +G+I
Sbjct: 309 VNPELGSI 316

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
             G+   D    +WD    N  +     + H   V C+SF      ++ATG  D    +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK 395
           DLR  +  +   E H   +F V +SP +   LA+   D  + +WDL K
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
             G+   D    +WD    N  +     + H   V C+SF      ++ATG  D    +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK 395
           DLR  +  +   E H   +F V +SP +   LA+   D  + +WDL K
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 301 DHSWRLWDLNQG-------QEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLR 352
           D +  +W++  G       + V+  EGH K V  +++     +V+ + G D    VWD+ 
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Query: 353 TGRCIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           TG  ++ L  + H  +++SVD+S DG  + T   D  V++ + RK
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
             G+   D    +WD    N  +     + H   V C+SF      ++ATG  D    +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRK 395
           DLR  +  +   E H   +F V +SP +   LA+   D  + +WDL K
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 306 LWDLNQG-------QEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCI 357
           +W++  G       + V+  EGH K V  +++     +V+ + G D    VWD+ TG  +
Sbjct: 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
Query: 358 MFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK 395
           + L  + H  +++SVD+S DG  + T   D  V++ + RK
Sbjct: 168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 294 FLGTCCWDHSWRLWDL---NQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVW 349
             G+   D    +WD    N  +     + H   V C+SF      ++ATG  D    +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 350 DLRTGRCIMF-LEGHLKSVFSVDFSPDGYH-LATGSEDNAVKIWDLRK 395
           DLR  +  +   E H   +F V +SP     LA+   D  + +WDL K
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	471
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.04
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.04
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.02
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.96
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.92
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.79
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.74
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.71
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.6
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.59
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.52
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.35
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.29
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.27
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.27
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.23
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.21
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.04
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.98
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.98
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.93
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.76
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.75
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.56
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.51
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.36
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.34
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.23
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.17
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.16
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.1
2dk4_A	76	PRE-mRNA-splicing factor 18; SFM domain, HPRP18, s	97.05
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.02
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.98
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.82
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.82
3ott_A	758	Two-component system sensor histidine kinase; beta	96.8
1mzw_B	31	U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-p	96.79
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.56
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.45
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.38
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.18
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.0
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.93
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.92
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.87
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.81
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.79
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.43
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.39
3ott_A	758	Two-component system sensor histidine kinase; beta	94.1
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.7
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.11
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.75
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	92.57
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.8
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.45
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.75
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.59
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.71
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	81.61
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.74
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	80.51

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-43  Score=346.24  Aligned_cols=254  Identities=24%  Similarity=0.472  Sum_probs=235.4

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      +....+.||..+|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++.     +|++|+.||+
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-----~l~sgs~D~~  173 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-----LLASCSADMT  173 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-----EEEEEETTSC
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-----EEEEEeCCCe
Confidence            34556789999999999999999999999999999999999999999999999999999999988     8999999999


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEE
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      |++||+.+++++..+.+|.. .|.+++|+|++.++++++.|+.+.+|..     ...+.+| ...|.++.|+|++.+|++
T Consensus       174 i~iwd~~~~~~~~~~~~h~~-~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          174 IKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             CCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred             EEEEeCCCCceeEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECCCCCEEEE
Confidence            99999999999999988877 8999999999999999999999777643     3455666 557999999999999999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCC--------------------CCEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD--------------------GSVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d--------------------~~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                      ++.|++|++||+.++++...+.+|...|.+++|+|+                    +.+|++|+.|+.|++||++++.++
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            999999999999999999999999999999999996                    679999999999999999999999


Q ss_pred             EEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        358 MFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       358 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ..+.+|...|.+++|+|+|++|++|+.||+|++||+.+++++..+.
T Consensus       332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            9999999999999999999999999999999999999888776543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.8e-43  Score=327.61  Aligned_cols=256  Identities=22%  Similarity=0.360  Sum_probs=232.8

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.+|...|++++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++.     +|++|+.|+
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~s~d~   77 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-----WIIVGSDDF   77 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-----EEEEEETTS
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC-----EEEEECCCC
Confidence            345567889999999999999999999999999999999999999999999999999999999998     799999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc------ccccCCCCcceEEEEECC-CCCE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL------ANLEGHEPFRVSRIKFHP-SGRF  294 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~------~~~~~~~~~~v~~l~~~~-~~~~  294 (471)
                      +|++||+.+++.+..+..|.. .|.+++|+|++.++++++.|+.+++|...      ..+.+| ...|.+++|+| ++.+
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEECTTCTTE
T ss_pred             EEEEEECCCCcEEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEECCCCCCE
Confidence            999999999999999998887 89999999999999999999997776432      235566 56899999999 6789


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEee-CCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      |++|+.|++|++||++++.....+. +|...+..++|+|  ++.+|++|+.|+.|++||+++++++..+.+|...|.+++
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            9999999999999998877665554 5668899999987  778999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      |+|++.+|++|+.||+|++||+.++++++.+..
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~  268 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV  268 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeeccC
Confidence            999999999999999999999999998877653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-43  Score=330.33  Aligned_cols=251  Identities=22%  Similarity=0.405  Sum_probs=225.0

Q ss_pred             eeeecCCcCeEEEEEecC----CCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        146 CSQVGDTRPISYCSFSPD----SQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~----~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      ..+.+|.++|++++|+|+    +.+|++|+.|++|+||++.+++.  ...+.+|...|.+++|+|++.     ++++++.
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~-----~l~s~s~  100 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-----IAASSSL  100 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS-----EEEEEET
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC-----EEEEEeC
Confidence            455699999999999985    67899999999999999977653  456889999999999999988     7999999


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCE
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      |++|++||+.+++.+..+..+.. .+.+++|+|+++++++++.++.+.++..     ...+..+ ...|.+++|+|++++
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCE
Confidence            99999999999999888887765 7889999999999999999999777543     2233444 457999999999999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      |++++.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++.+|++|+.|++|++||+.+++++.++.
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            99999999999999999999988776553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.7e-41  Score=320.54  Aligned_cols=278  Identities=22%  Similarity=0.255  Sum_probs=241.3

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.||..+|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++.     +|++|+.|+
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~d~  119 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN-----YVACGGLDN  119 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS-----EEEEEETTC
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC-----EEEEEeCCC
Confidence            345567889999999999999999999999999999999999999999999999999999999998     899999999


Q ss_pred             cEEEEeCCCCc----ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCC
Q psy11350        222 SVKLWSLDKDT----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       222 ~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      .|++|++.++.    ....+.+|.. .+.++.|++++. +++++.|+.+.+|..     ...+.+| ...|.+++|+|++
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~  196 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH-TGDVMSLSLAPDT  196 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSS-CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS
T ss_pred             eEEEEECccCCCcceeEEEecCCCc-cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC-CCceEEEEECCCC
Confidence            99999998753    3445666765 899999998876 889999999777543     3445666 5689999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc--cCcCEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG--HLKSVFSV  370 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~  370 (471)
                      ++|++|+.|++|++||+++++++..+.+|...|++++|+|++++|++|+.||.|++||+++++.+..+..  +...|+++
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~  276 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999988877652  33579999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeee
Q psy11350        371 DFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLL  450 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (471)
                      +|+|+|++|++|+.||.|++||+.+++.+..+..+                                           ..
T Consensus       277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-------------------------------------------~~  313 (340)
T 1got_B          277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-------------------------------------------DN  313 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-------------------------------------------SS
T ss_pred             EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-------------------------------------------CC
Confidence            99999999999999999999999887765443211                                           11


Q ss_pred             cccceeeeecCCeEEEeecC
Q psy11350        451 DIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       451 ~~~~l~fs~dg~~lA~~~~~  470 (471)
                      .+..++|+|||.+||.++.+
T Consensus       314 ~v~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          314 RVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             CEEEEEECTTSSCEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEcCC
Confidence            24567899999999988765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.1e-40  Score=315.85  Aligned_cols=278  Identities=21%  Similarity=0.248  Sum_probs=240.9

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .....+.||..+|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++.     ++++|+.|+.
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-----~lasg~~d~~  129 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-----AIACGGLDNK  129 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-----EEEEESTTSE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-----EEEEeeCCCC
Confidence            34567889999999999999999999999999999999999999999999999999999999998     7999999999


Q ss_pred             EEEEeCCCC------cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECC-
Q psy11350        223 VKLWSLDKD------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHP-  290 (471)
Q Consensus       223 i~iwd~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~-  290 (471)
                      +++|++...      .....+..|.. .|.++.|+|++..+++++.|+.+++|..     ...+.+| ...|.+++|+| 
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~  207 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVLCLDLAPS  207 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECCC
T ss_pred             EEEEEEeccccccccccceeeeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEeC
Confidence            999998644      23445555655 8999999999999999999999777643     3455666 55799999988 


Q ss_pred             -CCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc--CcCE
Q psy11350        291 -SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH--LKSV  367 (471)
Q Consensus       291 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h--~~~v  367 (471)
                       ++++|++|+.||+|++||+++++++..+.+|...|++++|+|++.+|++|+.|++|++||+++++.+..+..+  ...+
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence             5689999999999999999999999999999999999999999999999999999999999999887776543  3578


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccce
Q psy11350        368 FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIP  447 (471)
Q Consensus       368 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (471)
                      .+++|+|++.+|++|+.|++|++||+.+++.+..+..+                                          
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h------------------------------------------  325 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH------------------------------------------  325 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC------------------------------------------
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC------------------------------------------
Confidence            99999999999999999999999999888765433211                                          


Q ss_pred             eeecccceeeeecCCeEEEeecC
Q psy11350        448 LLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       448 ~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                       ...+..++|+|||++||+++.+
T Consensus       326 -~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          326 -ENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             -SSCEEEEEECTTSSCEEEEETT
T ss_pred             -CCcEEEEEECCCCCEEEEEcCC
Confidence             1235678999999999998865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3e-40  Score=311.29  Aligned_cols=285  Identities=20%  Similarity=0.292  Sum_probs=242.5

Q ss_pred             cceeeeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCC-----CceEEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPE-----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      +.+...+.||.++|++++|+|++ ++|++|+.|++|++|++.+     +.++..+.+|...|.+++|+|++.     +|+
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-----~l~   81 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-----YAL   81 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-----EEE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-----EEE
Confidence            45667889999999999999965 8999999999999999864     345778899999999999999998     799


Q ss_pred             EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEEECCC
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~  291 (471)
                      +|+.|++|++||+.+++.+..+.+|.. .|.+++|+|++.++++++.|+.+++|..    ...+.+| ...|.++.|+|.
T Consensus        82 s~s~D~~v~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h-~~~v~~~~~~~~  159 (319)
T 3frx_A           82 SASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH-NDWVSQVRVVPN  159 (319)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCC-SSCEEEEEECCC
T ss_pred             EEeCCCEEEEEECCCCCeeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEecc-CCcEEEEEEccC
Confidence            999999999999999999999998887 8999999999999999999999887653    3345556 557999999995


Q ss_pred             ------CCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc
Q psy11350        292 ------GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       292 ------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                            +..|++++.|++|++||+++++....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++++..+..+ .
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~  238 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D  238 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-S
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-C
Confidence                  448999999999999999999999999999999999999999999999999999999999999999888754 6


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhccccc
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEP  445 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (471)
                      .|.+++|+|++.+|++++.+ .+++|++..+..+..+......                          .         .
T Consensus       239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~--------------------------~---------~  282 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG--------------------------Y---------S  282 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT--------------------------C---------C
T ss_pred             cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc--------------------------c---------c
Confidence            89999999999999988765 5999999877665443211000                          0         0


Q ss_pred             ceeeecccceeeeecCCeEEEeecC
Q psy11350        446 IPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       446 ~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      ......+..++|+|||++||..+.+
T Consensus       283 ~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          283 KAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             GGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             cCcCcceeEEEECCCCCEEEEeecC
Confidence            0111234578999999999998865

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=311.11  Aligned_cols=261  Identities=19%  Similarity=0.337  Sum_probs=234.4

Q ss_pred             cchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEee
Q psy11350        125 EATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      ..++.++.|++..  ........+.||...|.+++|+|++.++++|+.|++|++||+.+++.+..+..|...+.+++|+|
T Consensus        55 s~D~~v~vW~~~~--~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp  132 (321)
T 3ow8_A           55 SLDDLVKVWKWRD--ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP  132 (321)
T ss_dssp             ETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred             cCCCCEEEEECCC--CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence            3444555554322  12234456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCC
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHE  279 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~  279 (471)
                      ++.     +|++++.||.|++|++.+++....+..+.. .+.+++|+|++++|++++.|+.+.++..     ...+.+| 
T Consensus       133 dg~-----~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-  205 (321)
T 3ow8_A          133 DSQ-----YLATGTHVGKVNIFGVESGKKEYSLDTRGK-FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-  205 (321)
T ss_dssp             TSS-----EEEEECTTSEEEEEETTTCSEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-
T ss_pred             CCC-----EEEEEcCCCcEEEEEcCCCceeEEecCCCc-eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-
Confidence            998     799999999999999999998888887765 8999999999999999999999777543     3345566 


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~  359 (471)
                      ...|.+++|+|++++|++++.|++|++||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.+++++..
T Consensus       206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  285 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT  285 (321)
T ss_dssp             SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        360 LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       360 ~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +.+|...|.+++|+|++.+|++++.||+|++||+.
T Consensus       286 ~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999999999999999999963

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7e-40  Score=336.22  Aligned_cols=318  Identities=17%  Similarity=0.252  Sum_probs=251.4

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC--ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-  220 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-  220 (471)
                      ....+.+|...|++++|+|+|++||+|+.||+|+|||+.++  .....+.+|.++|.+++|+|++.     .|++++.+ 
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~-----~l~~~~~~~  125 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK-----RIAAVGEGR  125 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC-----EEEEEECCS
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC-----EEEEEECCC
Confidence            44567799999999999999999999999999999998754  34567889999999999999998     68887765 


Q ss_pred             ---CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCC
Q psy11350        221 ---GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       221 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~  291 (471)
                         +.|++||  ++.....+.+|.. .|.+++|+|++. .+++++.|+.+++|..     ...+.+| ...|.+++|+|+
T Consensus       126 ~~~~~v~~wd--~~~~~~~l~gh~~-~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspd  201 (611)
T 1nr0_A          126 ERFGHVFLFD--TGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPD  201 (611)
T ss_dssp             SCSEEEEETT--TCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTT
T ss_pred             CceeEEEEee--CCCCcceecCCCC-CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-cCceEEEEECCC
Confidence               4677777  5667777888877 899999999997 5999999999888653     2356666 568999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEEee-------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE------
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVLHQE-------GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM------  358 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~------  358 (471)
                      +++|++++.|++|++||+.+++.+..+.       +|...|.+++|+|++++|++++.|++|++||+.+++++.      
T Consensus       202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~  281 (611)
T 1nr0_A          202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  281 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence            9999999999999999999999888774       799999999999999999999999999999999876543      


Q ss_pred             -------------------------------------EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhe
Q psy11350        359 -------------------------------------FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       359 -------------------------------------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                                                           .+.+|...|++++|+|+|++|++++.|++|++||+.++++...
T Consensus       282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence                                                 3457899999999999999999999999999999999887655


Q ss_pred             ecccCCC---------ccceeeccccceeeeecccCCCcccc------cc--------hhh----------------hcc
Q psy11350        402 CTQLLPN---------SIGVTSLLTDLYIDVLESLNPGIGNI------IS--------SAL----------------KEQ  442 (471)
Q Consensus       402 ~~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~------~~--------~~~----------------~~~  442 (471)
                      +...+..         ...+++...|..+.+|..........      +.        +..                ...
T Consensus       362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            4322221         12345556677777776543221100      00        000                000


Q ss_pred             cccceeeecccceeeeecCCeEEEeecC
Q psy11350        443 VEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       443 ~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      +..++....+..++|+|||++||+.+.+
T Consensus       442 ~~~~~~~~~v~~va~spdg~~lasgs~D  469 (611)
T 1nr0_A          442 LTEVPISYNSSCVALSNDKQFVAVGGQD  469 (611)
T ss_dssp             EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             eeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence            1111222345689999999999998865

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-40  Score=322.67  Aligned_cols=244  Identities=27%  Similarity=0.481  Sum_probs=226.5

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.+|..+|.+++|+|++++|++|+.||+|++||+.+++++..+.+|...|.+++|+|++.     +|++|+.|++|
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~-----~l~s~s~D~~i  216 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-----HIVSASRDKTI  216 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-----EEEEEETTSEE
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC-----EEEEEeCCCeE
Confidence            3456789999999999999999999999999999999999999999999999999999999988     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCC-------
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPS-------  291 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~-------  291 (471)
                      ++||+.++.++..+.+|.. .|.++.|+|++.++++++.|+.+++|..     ...+..| ...|.+++|+|+       
T Consensus       217 ~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~  294 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSIS  294 (410)
T ss_dssp             EEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGG
T ss_pred             EEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchh
Confidence            9999999999999998877 8999999999999999999999877643     2345566 568999999996       


Q ss_pred             -------------CCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy11350        292 -------------GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM  358 (471)
Q Consensus       292 -------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~  358 (471)
                                   +.+|++|+.|++|++||+++++++..+.+|...|++++|+|++.+|++|+.||.|++||+.+++++.
T Consensus       295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~  374 (410)
T 1vyh_C          295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK  374 (410)
T ss_dssp             GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             hhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence                         6789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        359 FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      .+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus       375 ~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.5e-40  Score=336.42  Aligned_cols=303  Identities=17%  Similarity=0.181  Sum_probs=250.4

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .+.+.+.+++|+|||++||+++ ++.|++|++.+++....+.+|...|++++|+|++.     +|++|+.||+|+|||+.
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-----~lasg~~d~~v~lWd~~   89 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-----YCASGDVHGNVRIWDTT   89 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEESS
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-----EEEEEeCCCCEEEeECC
Confidence            4677888999999999999998 67999999999999999999999999999999998     89999999999999997


Q ss_pred             CCcc--eeeecCCCCcceEEEEECCCCCEEEEEeCCC----eEEec---cccccccCCCCcceEEEEECCCCC-EEEEEe
Q psy11350        230 KDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDH----SWRLD---TPLANLEGHEPFRVSRIKFHPSGR-FLGTCC  299 (471)
Q Consensus       230 ~~~~--~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~----~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~  299 (471)
                      +++.  ...+..|.. .|.+++|+|+++++++++.+.    .+.++   .....+.+| ...|.+++|+|++. .|++++
T Consensus        90 ~~~~~~~~~~~~~~~-~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh-~~~v~~v~f~p~~~~~l~s~s  167 (611)
T 1nr0_A           90 QTTHILKTTIPVFSG-PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSRPFRIISGS  167 (611)
T ss_dssp             STTCCEEEEEECSSS-CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSSSCEEEEEE
T ss_pred             CCcceeeEeecccCC-ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCC-CCCceEEEECCCCCeEEEEEe
Confidence            5543  445666765 899999999999999988763    45444   344556777 56899999999987 599999


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-------ccCcCEEEEEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-------GHLKSVFSVDF  372 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~  372 (471)
                      .|++|++||..++++...+.+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.       +|.+.|.+++|
T Consensus       168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~  247 (611)
T 1nr0_A          168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  247 (611)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999988884       79999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheecccCC----------CccceeeccccceeeeecccCCCcccccchhhhcc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP----------NSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQ  442 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  442 (471)
                      +|+|++|++++.|++|++||+.+++++.++.....          ....+++...+..+.+|..........+       
T Consensus       248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~-------  320 (611)
T 1nr0_A          248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR-------  320 (611)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE-------
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE-------
Confidence            99999999999999999999999988877653322          1223444455555555553322110000       


Q ss_pred             cccceeeecccceeeeecCCeEEEeecC
Q psy11350        443 VEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       443 ~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                         ......+..++|+|||++||.++.+
T Consensus       321 ---~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          321 ---YGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ---cCCCCCEEEEEEeCCCCEEEEEeCC
Confidence               0122357889999999999998765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-40  Score=319.92  Aligned_cols=254  Identities=22%  Similarity=0.306  Sum_probs=220.6

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.||.++|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++.     +|++|+.|+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~-----~las~~~d~  130 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ-----SVACGGLDS  130 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS-----EEEECCSSS
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC-----EEEEeeCCC
Confidence            345567889999999999999999999999999999999999999999999999999999999998     799999999


Q ss_pred             cEEEEeCCCCc-------ceeeecCCCCcceEEEEECCCC-CEEEEEeCCCeEEeccccc-----cc-----cCCCCcce
Q psy11350        222 SVKLWSLDKDT-------PLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLDTPLA-----NL-----EGHEPFRV  283 (471)
Q Consensus       222 ~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~~~~~-----~~-----~~~~~~~v  283 (471)
                      .+++|++.+..       ....+.+|.. .+.++.|+|++ ..+++++.|+.+.+|....     .+     .+| ...|
T Consensus       131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h-~~~v  208 (380)
T 3iz6_a          131 ACSIFNLSSQADRDGNMPVSRVLTGHKG-YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH-TADV  208 (380)
T ss_dssp             CCEEEECCCCSSCCCSSTTCCBCCCCSS-CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC-CSCE
T ss_pred             cEEEEECCCCccccCCccceeeccCCCc-ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC-ccCe
Confidence            99999986532       3345566665 78999999975 5799999999988765321     11     344 5679


Q ss_pred             EEEEECC-CCCEEEEEecCCeEEEEECC-CCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        284 SRIKFHP-SGRFLGTCCWDHSWRLWDLN-QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       284 ~~l~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      .+++|+| ++++|++|+.|++|++||++ ..+.+..+.+|...|++++|+|++.+|++|+.||+|++||+++++++..+.
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            9999987 88999999999999999998 457788899999999999999999999999999999999999999988876


Q ss_pred             ccC-------cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        362 GHL-------KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       362 ~h~-------~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      .+.       ..|++++|+|+|++|++|+.||.|++||+..++.+..+
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            543       24899999999999999999999999999888766543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-38  Score=299.74  Aligned_cols=256  Identities=25%  Similarity=0.480  Sum_probs=227.4

Q ss_pred             ccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        141 SLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       141 ~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      .+.....+.||..+|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++.     +|++++.|
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~~~d   86 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-----LLVSASDD   86 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-----EEEEEETT
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCC-----EEEEECCC
Confidence            3556677889999999999999999999999999999999999999999999999999999999988     79999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      |.|++||+.+++.+..+..|.. .|.++.|+|+++++++++.|+.+.++..     ...+..| ...|.+++|+|++++|
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEE
T ss_pred             CEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEEcCCCCEE
Confidence            9999999999999999988876 8999999999999999999999777543     2344555 5689999999999999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEee-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE---EEE
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF---SVD  371 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~~~  371 (471)
                      ++++.||.|++||+++++.+..+. .+..++.+++|+|++++|++++.|+.|++||+++++++..+.+|...+.   ...
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence            999999999999999998877664 5667899999999999999999999999999999999999988876533   223


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ..+++.+|++|+.||.|++||+.+++++..+.
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  276 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ  276 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhhhhh
Confidence            34678999999999999999999988776554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9e-39  Score=304.46  Aligned_cols=249  Identities=21%  Similarity=0.313  Sum_probs=214.1

Q ss_pred             cceeeeeecCCcCeEEEEE-----ec-CCCEEEEEeCCCcEEEEeCCC-------CceEEEeecCCCCEEEEEEeeCCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSF-----SP-DSQHVATASWSGLCKLWTVPE-------CELVQTFRGHDCNVGAIEFHPLPSE  208 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~-----s~-~~~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~  208 (471)
                      +.....+.||+.+|++++|     ++ ++++|++|+.|++|++||+.+       +.....+.+|...|.+++|+|++. 
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-   89 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-   89 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT-
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC-
Confidence            4456678899999999999     76 899999999999999999864       345677889999999999999988 


Q ss_pred             CCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc-------ccCCCCc
Q psy11350        209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN-------LEGHEPF  281 (471)
Q Consensus       209 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~-------~~~~~~~  281 (471)
                          ++++|+.|++|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.|+.+++|.....       ...| ..
T Consensus        90 ----~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~~  163 (343)
T 2xzm_R           90 ----FAISSSWDKTLRLWDLRTGTTYKRFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH-SD  163 (343)
T ss_dssp             ----EEEEEETTSEEEEEETTSSCEEEEEECCCS-CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC-SS
T ss_pred             ----EEEEEcCCCcEEEEECCCCcEEEEEcCCCC-cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC-Cc
Confidence                799999999999999999999999998877 8999999999999999999999888754211       1134 55


Q ss_pred             ceEEEEECCCC----------CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        282 RVSRIKFHPSG----------RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       282 ~v~~l~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      .|.+++|+|++          .+|++++.||+|++||. ..+....+.+|...|++++|+|+|++|++|+.||.|++||+
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            79999999987          78999999999999994 56777788999999999999999999999999999999999


Q ss_pred             CC-CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        352 RT-GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       352 ~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      .. ..+...+. +...|.+++|+|++.+++++ .|+.|++||+.+++...
T Consensus       243 ~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          243 LNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             SCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred             CCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence            54 44444443 55679999999999887655 57889999998876554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=301.65  Aligned_cols=245  Identities=24%  Similarity=0.390  Sum_probs=206.9

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEe-ec-CCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC--ELVQTF-RG-HDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      +.....+.+|..+|.+++|+|+  +||+|+.||.|++||+.++  .....+ .+ |...|.+++|+|++.     +|++|
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-----~las~   76 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-----LLAAG   76 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-----EEEEE
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-----EEEEE
Confidence            4456678899999999999997  9999999999999999875  445555 34 999999999999988     89999


Q ss_pred             eCCCcEEEEeCCC-------CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---------cccccCCCCc
Q psy11350        218 AQDGSVKLWSLDK-------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---------LANLEGHEPF  281 (471)
Q Consensus       218 ~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---------~~~~~~~~~~  281 (471)
                      +.|++|+|||+..       .+.+..+.+|.. .|.+++|+|++++|++++.|+.+++|..         ...+.+| ..
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-~~  154 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH-SQ  154 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC-SS
T ss_pred             eCCCcEEEEEcccCcCccccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC-CC
Confidence            9999999999853       345566777776 8999999999999999999999777654         1234556 56


Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCC--cEEEEeeCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCC---
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG--QEVLHQEGHGKPVYCMSFQGD--GSVVATGGLDAFGRVWDLRTG---  354 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~d--~~~l~t~~~dg~i~iwd~~~~---  354 (471)
                      .|.+++|+|++.+|++++.|++|++||+.++  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||+..+   
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence            8999999999999999999999999999876  577888999999999999998  779999999999999998764   


Q ss_pred             -----eeEEEecc-cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        355 -----RCIMFLEG-HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       355 -----~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                           .+...+.+ |...|.+++|++++ +|++++.||+|++||..++
T Consensus       235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          235 DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence                 44555655 89999999999765 7999999999999998765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=303.07  Aligned_cols=243  Identities=19%  Similarity=0.189  Sum_probs=207.5

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE----eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT----FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ...|..+|.+++|+|++ .|++|+.||+|+|||+.+++.+..    +.+|...|++++|+|++.     +|++|+.||+|
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-----~l~sgs~d~~i  151 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-----QAVSGSKDICI  151 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-----EEEEEETTSCE
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-----EEEEEeCCCeE
Confidence            34577899999999985 688999999999999998876543    448999999999999998     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccc-----cccccC-CCCcceEEEEECCC-CCEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTP-----LANLEG-HEPFRVSRIKFHPS-GRFL  295 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~-----~~~~~~-~~~~~v~~l~~~~~-~~~l  295 (471)
                      ++||+.+++++..+.+|.. .|.+++|+|++. ++++++.|+.+++|..     ...+.. .....+.+++|+|+ +++|
T Consensus       152 ~iwd~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l  230 (344)
T 4gqb_B          152 KVWDLAQQVVLSSYRAHAA-QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVF  230 (344)
T ss_dssp             EEEETTTTEEEEEECCCSS-CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred             EEEECCCCcEEEEEcCcCC-ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcce
Confidence            9999999999999999887 899999999985 7889999999777643     222221 22446899999994 5688


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      ++|+.||+|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|
T Consensus       231 ~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          231 VFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSP  309 (344)
T ss_dssp             EEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECS
T ss_pred             EEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeC
Confidence            999999999999999999999999999999999999997 58999999999999999998765 5789999999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCccc
Q psy11350        375 DGY-HLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       375 ~~~-~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      ++. +|++||.||+|++|++.+...
T Consensus       310 ~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          310 LNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             SSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCeEEEEEcCCCeEEEEECCCCCC
Confidence            875 677999999999999987543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-39  Score=310.99  Aligned_cols=246  Identities=15%  Similarity=0.161  Sum_probs=201.9

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceE----EEeecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASW------SGLCKLWTVPECELV----QTFRGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~------dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      .+|.+.|++++|||||++||+|+.      |+.|++|+..++...    ....+|...|.+++|+|++.      +++++
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~------~l~~s  112 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG------ILVAS  112 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE------EEEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC------EEEEE
Confidence            369999999999999999999996      788999998776543    33457889999999999875      77889


Q ss_pred             CCCcEEEEeCCCCcceee----ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEEC
Q psy11350        219 QDGSVKLWSLDKDTPLAN----LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~  289 (471)
                      .||+|+|||+.+++....    ..+|.. .|.+++|+|++++|++++.|+.+++|..     ...+.+| ...|.+++|+
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s  190 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCVAAC  190 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEc
Confidence            999999999988765433    224544 8999999999999999999999777543     3445666 5689999999


Q ss_pred             CCCC-EEEEEecCCeEEEEECCCCcEEEEe--eCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCeeEEEecccCc
Q psy11350        290 PSGR-FLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQGD-GSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       290 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~d-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                      |++. ++++++.||+|++||+++++++..+  ..|...+++++|+|+ +.+|++|+.|+.|++||+++++++..+.+|..
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~  270 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ  270 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce
Confidence            9875 7899999999999999998876654  356778999999996 56899999999999999999999999999999


Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccchhee
Q psy11350        366 SVFSVDFSPDG-YHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       366 ~v~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      .|++++|+|++ ++|++|+.||+|+|||+++++++..+
T Consensus       271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            99999999987 68999999999999999998876543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-39  Score=306.22  Aligned_cols=242  Identities=19%  Similarity=0.260  Sum_probs=200.7

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC-----------CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVP-----------ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~-----------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      .|...|.+++|+|||++|++++ |+++++||..           ..........|...|.+++|+|++      .|++|+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~------~l~~~s  100 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER------GILVAS  100 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT------EEEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC------eEEEEE
Confidence            5788899999999999999888 7777777631           111111222456789999999986      489999


Q ss_pred             CCCcEEEEeCCCCcceeeec----CCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEEC
Q psy11350        219 QDGSVKLWSLDKDTPLANLE----GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~  289 (471)
                      .||+|+|||+.+++.+..+.    +|.. .|.+++|+|+|++|++++.|+.+++|.     ....+.+| ...|.+++|+
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~-~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~  178 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDD-IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAAS  178 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEec
Confidence            99999999999988665433    5655 899999999999999999999977754     34456677 6689999999


Q ss_pred             CCCC-EEEEEecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc
Q psy11350        290 PSGR-FLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       290 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                      |++. +|++++.|++|++||++++++...+.  .|...+.+++|+| ++.+|++|+.||.|+|||+++++++..+.+|..
T Consensus       179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~  258 (344)
T 4gqb_B          179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ  258 (344)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS
T ss_pred             CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC
Confidence            9885 78999999999999999998887764  4567799999999 567899999999999999999999999999999


Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccchh
Q psy11350        366 SVFSVDFSPDG-YHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       366 ~v~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      .|++++|+|++ ++|++|+.|++|+|||+.+++++.
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999999997 589999999999999999887553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=302.33  Aligned_cols=249  Identities=23%  Similarity=0.429  Sum_probs=214.4

Q ss_pred             cceeeeeecCCc-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE---EeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        142 LSIYCSQVGDTR-PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ---TFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       142 ~~~~~~~~gh~~-~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      +.....+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++....   ...+|...|.+++|+|++.     +|++|
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-----~l~s~   79 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-----YLASA   79 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-----EEEEE
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-----EEEEE
Confidence            345667789988 99999999999999999999999999998876432   2358999999999999998     89999


Q ss_pred             eCCCcEEEEeCCCCc--ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc--------cccccCCCCcceEEEE
Q psy11350        218 AQDGSVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP--------LANLEGHEPFRVSRIK  287 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~--------~~~~~~~~~~~v~~l~  287 (471)
                      +.|++|++|++.++.  ++..+.+|.. .|.+++|+|++++|++++.|+.+.+|..        ...+..| ...|.+++
T Consensus        80 s~D~~v~iw~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~  157 (345)
T 3fm0_A           80 SFDATTCIWKKNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVV  157 (345)
T ss_dssp             ETTSCEEEEEECCC-EEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEE
T ss_pred             ECCCcEEEEEccCCCeEEEEEccCCCC-CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEE
Confidence            999999999987764  5667788776 8999999999999999999999777543        2234555 56799999


Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCCc--EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-----------
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-----------  354 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-----------  354 (471)
                      |+|++++|++++.|++|++||+++++  +...+.+|...|++++|+|+|++|++|+.|++|+|||....           
T Consensus       158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            99999999999999999999998875  45678899999999999999999999999999999996321           


Q ss_pred             ----eeEEEecc-cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        355 ----RCIMFLEG-HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       355 ----~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                          +++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.
T Consensus       238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence                34555555 88899999999999999999999999999987653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-38  Score=294.47  Aligned_cols=243  Identities=21%  Similarity=0.294  Sum_probs=208.4

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceEEEeecCCCCEEEEEEeeC--CCCCCccEEEEEeCCC
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIEFHPL--PSEGAVCSLASCAQDG  221 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~--~~~~~~~~l~s~~~dg  221 (471)
                      ..+.+|...|++++|+|+|++||+|+.|++|+|||+.+  ++.+.++.+|..+|.+++|+|.  +.     +|++|+.||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-----~l~s~s~D~   77 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDG   77 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-----EEEEEETTT
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-----EEEEEcCCC
Confidence            35679999999999999999999999999999999974  4678899999999999999864  55     799999999


Q ss_pred             cEEEEeCCCCc--ceeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEecccc-------ccccCCCCcceEEEEECC
Q psy11350        222 SVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLDTPL-------ANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       222 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~~~-------~~~~~~~~~~v~~l~~~~  290 (471)
                      +|++||+.+++  .+..+..|.. .|.+++|+|+  +.++++++.|+.++++...       ..+.+| ...|.+++|+|
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h-~~~v~~~~~~p  155 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNSASWAP  155 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-SSCEEEEEECC
T ss_pred             EEEEEEcCCCceEEEEEeecCCC-ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-cCccceEeecC
Confidence            99999998774  4556666665 8999999998  8999999999997775432       223455 55799999999


Q ss_pred             C-------------CCEEEEEecCCeEEEEECCCCc----EEEEeeCCCCCeEEEEEeCCC---CEEEEEeCCCeEEEEe
Q psy11350        291 S-------------GRFLGTCCWDHSWRLWDLNQGQ----EVLHQEGHGKPVYCMSFQGDG---SVVATGGLDAFGRVWD  350 (471)
Q Consensus       291 ~-------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d~---~~l~t~~~dg~i~iwd  350 (471)
                      +             +++|++|+.|++|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|++|+|||
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            7             5799999999999999998765    566788999999999999984   8999999999999999


Q ss_pred             CCCCe---eEEEe--cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        351 LRTGR---CIMFL--EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       351 ~~~~~---~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      ++++.   ....+  ..|...|.+++|+|+|++|++++.||+|+||+...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            98743   22233  46888999999999999999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.4e-38  Score=304.26  Aligned_cols=251  Identities=25%  Similarity=0.425  Sum_probs=218.0

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCC------------------CEEEEEEeeCCCCCC
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDC------------------NVGAIEFHPLPSEGA  210 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~~~  210 (471)
                      .+|...|.+++|+|||++||+|+ ++.++||++.+++.+..+..|..                  .|.+++|+|++.   
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~---  136 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK---  136 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS---
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC---
Confidence            37999999999999999999987 78999999999998888765532                  499999999998   


Q ss_pred             ccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---cccCCCCcceEEEE
Q psy11350        211 VCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRIK  287 (471)
Q Consensus       211 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l~  287 (471)
                        +|++|+.|++|++||+.+++.+..+.+|.. .|.+++|+|++.++++++.|+.+++|....   .........+.+++
T Consensus       137 --~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  213 (393)
T 1erj_A          137 --FLATGAEDRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  213 (393)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             --EEEEEcCCCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEE
Confidence              799999999999999999999999998887 899999999999999999999977764321   11111244699999


Q ss_pred             ECC-CCCEEEEEecCCeEEEEECCCCcEEEEe-------eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-----
Q psy11350        288 FHP-SGRFLGTCCWDHSWRLWDLNQGQEVLHQ-------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-----  354 (471)
Q Consensus       288 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-----  354 (471)
                      |+| ++++|++++.||+|++||+++++.+..+       .+|...|++++|+|++++|++|+.|+.|++||+++.     
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            999 8999999999999999999999887766       579999999999999999999999999999999753     


Q ss_pred             -------eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC
Q psy11350        355 -------RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       355 -------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                             .+...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+..+.
T Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence                   4566788999999999999999999999999999999999999887776543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-37  Score=318.06  Aligned_cols=303  Identities=27%  Similarity=0.444  Sum_probs=246.2

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ..+.+.||+++|++++|||||++||+|+.|+.|+|||. +++++.++.+|...|++++|+|++.     +|++++.|++|
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~-----~las~~~d~~i   81 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ-----TIASASDDKTV   81 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS-----EEEEEETTSCE
T ss_pred             EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCC-----EEEEEeCCCEE
Confidence            34568899999999999999999999999999999995 7899999999999999999999998     89999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-------------------------------
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-------------------------------  272 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-------------------------------  272 (471)
                      +|||+ +++.+..+.+|.. .|.+++|+|+++++++++.|+.+.++...                               
T Consensus        82 ~vWd~-~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  159 (577)
T 2ymu_A           82 KLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD  159 (577)
T ss_dssp             EEEET-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEEEC-CCCEEEEEECCCC-CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccc
Confidence            99996 6788888888876 89999999999999999999885542110                               


Q ss_pred             --------------ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE
Q psy11350        273 --------------ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       273 --------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                                    ..... ....|.++.|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++.+|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~  237 (577)
T 2ymu_A          160 DKTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA  237 (577)
T ss_dssp             TSEEEEECTTSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             ccceeccccceeeeeeccC-CCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEE
Confidence                          00111 2346889999999999999999999999996 5678888999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC---------CCc
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL---------PNS  409 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~~  409 (471)
                      +++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+..+.         +..
T Consensus       238 ~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~  315 (577)
T 2ymu_A          238 SASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG  315 (577)
T ss_dssp             EEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCC
Confidence            9999999999995 567888999999999999999999999999999999999964 55555554332         222


Q ss_pred             cceeeccccceeeeecccCCCcccccchhhhcccccce-eeecccceeeeecCCeEEEeecC
Q psy11350        410 IGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIP-LLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       410 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      ..+++...|..+.+|......            +..+. ....+..++|+|+|++||+.+.+
T Consensus       316 ~~l~t~~~d~~i~~w~~~~~~------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  365 (577)
T 2ymu_A          316 QTIASASDDKTVKLWNRNGQH------------LQTLTGHSSSVWGVAFSPDGQTIASASDD  365 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSCE------------EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEeCCCCe------------eEEEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence            233333444455555432211            11111 22356789999999999988764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.9e-38  Score=296.85  Aligned_cols=255  Identities=22%  Similarity=0.337  Sum_probs=223.6

Q ss_pred             chhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceEEEeecCCCCEEEEE
Q psy11350        126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC----ELVQTFRGHDCNVGAIE  201 (471)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~  201 (471)
                      .++.++.|+...    ......+.+|...|.+++|+|++++|++|+.|+.|++|++.++    .....+.+|...|.++.
T Consensus        75 ~Dg~v~iWd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~  150 (340)
T 1got_B           75 QDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR  150 (340)
T ss_dssp             TTTEEEEEETTT----CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEE
T ss_pred             CCCcEEEEECCC----CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEE
Confidence            344445554322    2334556789999999999999999999999999999999765    35667889999999999


Q ss_pred             EeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----ccccc
Q psy11350        202 FHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLE  276 (471)
Q Consensus       202 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~  276 (471)
                      |++++      .+++++.|++|++||+.+++.+..+.+|.. .|.+++|+|++.++++++.|+.+++|..     ...+.
T Consensus       151 ~~~~~------~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          151 FLDDN------QIVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             EEETT------EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             ECCCC------cEEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            99987      489999999999999999999999998877 8999999999999999999999777643     33456


Q ss_pred             CCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG  354 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~  354 (471)
                      +| ...|.+++|+|++++|++++.||+|++||+++++.+..+..  +...|++++|+|+|++|++|+.||.|++||+.++
T Consensus       224 ~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          224 GH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence            66 56899999999999999999999999999999887776643  3357999999999999999999999999999999


Q ss_pred             eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        355 RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       355 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      +.+..+.+|...|.+++|+|+|.+|++|+.||+|+|||
T Consensus       303 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.3e-37  Score=291.17  Aligned_cols=288  Identities=22%  Similarity=0.379  Sum_probs=239.1

Q ss_pred             cccceeeeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCC-----ceEEEeecCCCCEEEEEEeeCCCCCCccE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPEC-----ELVQTFRGHDCNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  213 (471)
                      ..+.+..++.||+++|++++|+|+ +++||||+.||+|+|||+.+.     .+...+.+|...|.+++|+|++.     +
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~-----~  100 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-----F  100 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS-----E
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC-----E
Confidence            345566789999999999999998 689999999999999998764     35677889999999999999998     8


Q ss_pred             EEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc------ccccCCCCcceEEEE
Q psy11350        214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL------ANLEGHEPFRVSRIK  287 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~------~~~~~~~~~~v~~l~  287 (471)
                      |++++.|+.|++|+............+.. .+..+.+++++.++++++.|+.+.++...      ....+| ...+..++
T Consensus       101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~-~~~v~~~~  178 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTK-DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH-SEWVSCVR  178 (340)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSC-SSCEEEEE
T ss_pred             EEEEcccccceEEeecccceeeeecCCCC-ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccc-cCcccceE
Confidence            99999999999999988877777766665 78899999999999999999997775432      223344 55799999


Q ss_pred             ECCCC--CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc
Q psy11350        288 FHPSG--RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       288 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                      |++++  .++++++.|+.|++||+++++.+..+.+|..+|++++|+|++++|++|+.||.|++||+++++++..+..+ .
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~  257 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-D  257 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-S
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-c
Confidence            98865  57889999999999999999999999999999999999999999999999999999999999999888754 6


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhccccc
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEP  445 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (471)
                      .|.+++|+|++.++ +++.|+.|++||++++..+..+.......                                  ..
T Consensus       258 ~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------~~  302 (340)
T 4aow_A          258 IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIST----------------------------------SS  302 (340)
T ss_dssp             CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC----------------------------------------
T ss_pred             eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceee----------------------------------ec
Confidence            89999999987654 56679999999999887766543211000                                  00


Q ss_pred             ceeeecccceeeeecCCeEEEeecC
Q psy11350        446 IPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       446 ~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      ......+..|+|+|||++||+++.+
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCC
Confidence            0112346688999999999998865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-37  Score=293.52  Aligned_cols=253  Identities=16%  Similarity=0.208  Sum_probs=223.4

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ......+.+|..+|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.     +|++++.||
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~~~dg   96 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK-----YCVTGSADY   96 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTT
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC-----EEEEEeCCC
Confidence            344566789999999999999999999999999999999999999999999999999999999987     799999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-----CeEEeccc----------------cccccCCC-
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----HSWRLDTP----------------LANLEGHE-  279 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-----~~~~~~~~----------------~~~~~~~~-  279 (471)
                      .|++||+.+++.+..+..  ...+.+++|+|++.++++++.+     +.+.++..                ...+..+. 
T Consensus        97 ~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWKS--PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC--SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             eEEEEECCCCcEEEEeec--CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            999999999998888873  3389999999999999999998     77655322                11222221 


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCC-CcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQ-GQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM  358 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~  358 (471)
                      ...+.+++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+.
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK  254 (369)
T ss_dssp             CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence            12799999999999999999999999999998 78888899999999999999999999999999999999999999988


Q ss_pred             EecccCcCEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCccchhee
Q psy11350        359 FLEGHLKSVFSVDFSPDGYHLATGSEDN--------------AVKIWDLRKRRLLKWC  402 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg--------------~i~iwd~~~~~~~~~~  402 (471)
                      .+. +...+.+++|+|++.++++++.++              .+++||+.+++++..+
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  311 (369)
T 3zwl_B          255 KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV  311 (369)
T ss_dssp             EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred             eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence            887 778999999999999999999998              7888888777766544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.5e-37  Score=322.25  Aligned_cols=254  Identities=24%  Similarity=0.406  Sum_probs=225.2

Q ss_pred             ccceeeeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC-----ceEEEeecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        141 SLSIYCSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPEC-----ELVQTFRGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       141 ~~~~~~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      .+.....+.+|++.|++++|+|++ ++|++|+.||+|++|++.+.     .....+.+|...|.+++|+|++.     +|
T Consensus       371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-----~l  445 (694)
T 3dm0_A          371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-----FA  445 (694)
T ss_dssp             SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-----EE
T ss_pred             ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-----EE
Confidence            345566789999999999999875 78999999999999998753     45677889999999999999998     79


Q ss_pred             EEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc--------ccCCCCcceEEE
Q psy11350        215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN--------LEGHEPFRVSRI  286 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~--------~~~~~~~~v~~l  286 (471)
                      ++|+.||+|+|||+.++.....+.+|.. .|.+++|+|++++|++++.|+.+++|.....        ..+| ...|.++
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~  523 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH-RDWVSCV  523 (694)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC-SSCEEEE
T ss_pred             EEEeCCCcEEEEECCCCcceeEEeCCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC-CCcEEEE
Confidence            9999999999999999999999998887 8999999999999999999999888754211        1234 5579999


Q ss_pred             EECCCC--CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        287 KFHPSG--RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       287 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      +|+|++  ..|++++.|++|++||+++++....+.+|...|++++|+|++++|++|+.||.|++||+++++++..+.. .
T Consensus       524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~  602 (694)
T 3dm0_A          524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-N  602 (694)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-S
T ss_pred             EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-C
Confidence            999987  5899999999999999999999999999999999999999999999999999999999999999888764 5


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ..|.+++|+|++.+|++++ ++.|++||+++++++..+.
T Consensus       603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence            6899999999998887775 5669999999998887664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-37  Score=296.93  Aligned_cols=247  Identities=18%  Similarity=0.181  Sum_probs=204.9

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE----EeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ----TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      .....+|...|++++|+|++.+ ++++.||+|+|||+.+++...    ...+|...|.+++|+|++.     +|++|+.|
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-----~l~sgs~d  160 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-----QAVSGGKD  160 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-----EEEEEETT
T ss_pred             ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-----EEEEEeCC
Confidence            3445689999999999999864 567779999999998876543    3447999999999999998     79999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEecccc-----cccc-CCCCcceEEEEECCC-C
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPL-----ANLE-GHEPFRVSRIKFHPS-G  292 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~-----~~~~-~~~~~~v~~l~~~~~-~  292 (471)
                      |+|++||+.+++.+..+..|.. .|.+++|+|++. ++++++.|+.+++|...     ..+. ......+.+++|+|+ +
T Consensus       161 g~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          161 FSVKVWDLSQKAVLKSYNAHSS-EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             CeEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            9999999999999999998877 899999999985 78999999998886432     1221 223457999999997 4


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      .+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ .+|++|+.|++|+|||+++++++..+ +|.+.|++++
T Consensus       240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~va  318 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVA  318 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEE
T ss_pred             ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEE
Confidence            688999999999999999999999999999999999999987 58999999999999999999887665 7999999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEECCCccch
Q psy11350        372 FSP-DGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       372 ~sp-~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      |+| ++.+|+||+.||+|++||+.+....
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            999 7999999999999999999765433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.5e-37  Score=326.92  Aligned_cols=257  Identities=21%  Similarity=0.338  Sum_probs=234.2

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.+|+..|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++.     +|++++.||
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg   77 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN-----WIIVGSDDF   77 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-----EEEEEETTS
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC-----EEEEEeCCC
Confidence            345567889999999999999999999999999999999999999999999999999999999998     799999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc------cccccCCCCcceEEEEECC-CCCE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP------LANLEGHEPFRVSRIKFHP-SGRF  294 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~------~~~~~~~~~~~v~~l~~~~-~~~~  294 (471)
                      .|++||+.+++.+..+..|.. .|.+++|+|+++++++++.|+.+.+|..      ...+.+| ...|.+++|+| ++..
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDPST  155 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC-SSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC-CCcEEEEEEEcCCCCE
Confidence            999999999999999988876 8999999999999999999999777542      2234455 56899999999 8899


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCC-CCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHG-KPVYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      |++++.||+|++||+.++.....+..+. ..+.+++|+|  ++.+|++++.||.|++||+.+++++..+.+|...|.+++
T Consensus       156 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~  235 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (814)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            9999999999999999888777776655 8999999999  999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      |+|++.+|++++.||.|++||+.+++.+..+..+
T Consensus       236 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            9999999999999999999999999888776544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-37  Score=294.71  Aligned_cols=248  Identities=27%  Similarity=0.462  Sum_probs=207.6

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC--ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+|...|.+++|+|+|++|++|+.|+.|+||++.++  +.+..+.+|...|.+++|+|++.     +|++|+.|++|++
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-----~l~s~s~D~~v~i  131 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-----LLATCSRDKSVWV  131 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-----EEEEEECCCeEEE
Confidence            4689999999999999999999999999999998766  45778899999999999999988     8999999999999


Q ss_pred             EeCCCCc---ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-------cccccCCCCcceEEEEECCCCCEE
Q psy11350        226 WSLDKDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-------LANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       226 wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      ||+.++.   ++..+..|.. .|.+++|+|++.+|++++.|+.+.++..       ...+.+| ...|.+++|+|++++|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~l  209 (345)
T 3fm0_A          132 WEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRL  209 (345)
T ss_dssp             EEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSEE
T ss_pred             EECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCEE
Confidence            9998764   3455666665 8999999999999999999999777532       2345666 5689999999999999


Q ss_pred             EEEecCCeEEEEECCCC---------------cEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe----
Q psy11350        296 GTCCWDHSWRLWDLNQG---------------QEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR----  355 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~----  355 (471)
                      ++++.|++|++||....               +++..+.+ |...|++++|+|++..|++++.|+.|++|+...+.    
T Consensus       210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~  289 (345)
T 3fm0_A          210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ  289 (345)
T ss_dssp             EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS
T ss_pred             EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce
Confidence            99999999999996321               23444554 88999999999999999999999999999987542    


Q ss_pred             -----eEEEecccCcCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccchhee
Q psy11350        356 -----CIMFLEGHLKSVFSVDFSPDG-YHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       356 -----~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                           ......+|...|++++|+|++ .+|++|+.||+|++|++.+++.+...
T Consensus       290 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence                 122346899999999999987 59999999999999999998876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-36  Score=309.58  Aligned_cols=303  Identities=28%  Similarity=0.480  Sum_probs=252.0

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.+|..+|.+++|+|++++|++++.|+.|++|+. +++....+.+|...|.+++|+|++.     .|++++.||+|
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~t~~~d~~i  327 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ-----TIASASDDKTV  327 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCE
T ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCC-----EEEEEeCCCeE
Confidence            44567799999999999999999999999999999996 5678888999999999999999988     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      ++||+. +..+..+..+.. .+.+++|+|+++++++++.++.+.++..    ...+..| ...|.+++|+|++++|++++
T Consensus       328 ~~w~~~-~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~  404 (577)
T 2ymu_A          328 KLWNRN-GQHLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDGQTIASAS  404 (577)
T ss_dssp             EEEETT-SCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECC-SSCEEEEEECTTSSCEEEEE
T ss_pred             EEEeCC-CCeeEEEeCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCC-CCCeEEEEECCCCCEEEEEe
Confidence            999975 455666776665 8999999999999999999999877643    3344555 56899999999999999999


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      .|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|
T Consensus       405 ~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          405 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            9999999995 56788889999999999999999999999999999999996 677888999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCccchheecccC---------CCccceeeccccceeeeecccCCCcccccchhhhcccccce-ee
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLKWCTQLL---------PNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIP-LL  449 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  449 (471)
                      ++++.|++|++||. ++++++.+..+.         +....+++...|..+.+|+...            ..+..+. ..
T Consensus       483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~------------~~~~~~~~h~  549 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHS  549 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS------------CEEEEEECCS
T ss_pred             EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC------------CEEEEEcCCC
Confidence            99999999999995 577777665432         2233344445555555555211            1122222 23


Q ss_pred             ecccceeeeecCCeEEEeecC
Q psy11350        450 LDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       450 ~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      ..+..++|+|||++|+.++.+
T Consensus       550 ~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          550 SSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETT
T ss_pred             CCEEEEEEcCCCCEEEEEeCC
Confidence            357889999999999998865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.3e-38  Score=296.97  Aligned_cols=242  Identities=21%  Similarity=0.285  Sum_probs=202.6

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeC--CCCCCccEEEEEeCCCc
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPL--PSEGAVCSLASCAQDGS  222 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~~~~~l~s~~~dg~  222 (471)
                      .+.+|..+|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|...|.+++|+|.  +.     +|++|+.|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-----~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-----ILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-----CEEEEETTSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-----EEEEEECCCE
Confidence            456899999999999999999999999999999998764  46788999999999999863  55     6999999999


Q ss_pred             EEEEeCCCCc--ceeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEeccc--------cccccCCCCcceEEEEECC
Q psy11350        223 VKLWSLDKDT--PLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLDTP--------LANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       223 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~~--------~~~~~~~~~~~v~~l~~~~  290 (471)
                      |++||+.++.  ....+.+|.. .|.+++|+|+  +.++++++.|+.++++..        ...+.+| ...|.+++|+|
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~  160 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDS-SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH-TIGCNAVSWAP  160 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSS-CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS-SSCBCCCEECC
T ss_pred             EEEEECCCCcceEEEEccCCCC-ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc-cCCcceEEEcc
Confidence            9999998774  4556667766 8999999998  889999999999777542        2233455 55799999999


Q ss_pred             C-----------------CCEEEEEecCCeEEEEECCCC---cEEEEeeCCCCCeEEEEEeCCC----CEEEEEeCCCeE
Q psy11350        291 S-----------------GRFLGTCCWDHSWRLWDLNQG---QEVLHQEGHGKPVYCMSFQGDG----SVVATGGLDAFG  346 (471)
Q Consensus       291 ~-----------------~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~d~----~~l~t~~~dg~i  346 (471)
                      +                 +++|++|+.|++|++||++..   +++..+.+|...|.+++|+|++    .+|++|+.|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence            7                 478999999999999999765   4667788999999999999986    899999999999


Q ss_pred             EEEeCCCC---e-eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        347 RVWDLRTG---R-CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       347 ~iwd~~~~---~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      +|||+.+.   . ....+..|...|.+++|+|++++|++|+.||+|++|+...
T Consensus       241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99998763   1 2234567889999999999999999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.6e-37  Score=297.63  Aligned_cols=238  Identities=25%  Similarity=0.445  Sum_probs=212.0

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      +...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++.     +|++++.|++|++||+.+
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-----~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-----KLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTT
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-----EEEEecCCCcEEEEECCC
Confidence            455699999999999999999999999999999999999999999999999999998     799999999999999999


Q ss_pred             CcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEecccc-----ccc-------cCCCCcceEEEEECCCCCEEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTPL-----ANL-------EGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~~-----~~~-------~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      +++...+..+.  .+.+++|+| ++.++++++.|+.++++...     ..+       .+| ...|.+++|+|++++|++
T Consensus       197 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          197 GQCSLTLSIED--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TEEEEEEECSS--CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSSEEEE
T ss_pred             CeeEEEEEcCC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCCCEEEE
Confidence            98877776544  799999999 89999999999998776432     112       344 568999999999999999


Q ss_pred             EecCCeEEEEECCCC------------cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc
Q psy11350        298 CCWDHSWRLWDLNQG------------QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                      ++.|++|++||+++.            .+...+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|..
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence            999999999999753            34567789999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEcC------CCCEEEEEeCCCcEEEEECCCc
Q psy11350        366 SVFSVDFSP------DGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       366 ~v~~~~~sp------~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      .|.+++|+|      ++.+|++|+.||+|+||++...
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999986      6789999999999999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.6e-37  Score=297.15  Aligned_cols=253  Identities=13%  Similarity=0.160  Sum_probs=223.5

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc------eEEEeecCCCCEEEEEEeeC----C---CCC
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE------LVQTFRGHDCNVGAIEFHPL----P---SEG  209 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~----~---~~~  209 (471)
                      .....+.+|..+|++++|+|  ++|++|+.||.|++|++.+++      .+..+.+|...|.+++|+|+    +   .  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--   82 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--   82 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--
Confidence            34556779999999999999  899999999999999999887      78889999999999999999    7   6  


Q ss_pred             CccEEEEEeCCCcEEEEeCCCCcc-----eeeecCCC----CcceEEEEEC----CCCCE-EEEEeCCCeEEeccccc--
Q psy11350        210 AVCSLASCAQDGSVKLWSLDKDTP-----LANLEGHE----PFRVSRIKFH----PSGRF-LGTCCWDHSWRLDTPLA--  273 (471)
Q Consensus       210 ~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~----~~~v~~~~~s----~~~~~-i~~~~~d~~~~~~~~~~--  273 (471)
                         +|++++.||.|++||+.+++.     ...+..+.    ...|.+++|+    |++.+ +++++.|+.+.++....  
T Consensus        83 ---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           83 ---LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             ---EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             ---EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence               799999999999999998887     78888774    3489999999    99999 99999999866643322  


Q ss_pred             --------------ccc------CCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC---C---CCCeEE
Q psy11350        274 --------------NLE------GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG---H---GKPVYC  327 (471)
Q Consensus       274 --------------~~~------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~  327 (471)
                                    .+.      ..+...|.+++|+|++ +|++++.||.|++||+++++.+..+..   |   ..+|.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence                          332      2235679999999999 999999999999999999999999998   9   999999


Q ss_pred             EEEeCCCCEEEEEeCC---CeEEEEeCCCCeeEEEecc-------------cCcCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy11350        328 MSFQGDGSVVATGGLD---AFGRVWDLRTGRCIMFLEG-------------HLKSVFSVDFSPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       328 ~~~s~d~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~l~s~s~dg~i~iw  391 (471)
                      ++|+|++.+|++++.|   |.|++||+++++++..+.+             |...|.+++|+|++++|++++.||.|++|
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999   9999999999999999998             99999999999999999999999999999


Q ss_pred             ECCCccchheec
Q psy11350        392 DLRKRRLLKWCT  403 (471)
Q Consensus       392 d~~~~~~~~~~~  403 (471)
                      |+++++++..+.
T Consensus       319 d~~~~~~~~~~~  330 (397)
T 1sq9_A          319 DVKTKERITTLN  330 (397)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             EcCCCceeEEEe
Confidence            999998877665

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-36  Score=286.20  Aligned_cols=242  Identities=22%  Similarity=0.383  Sum_probs=213.8

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.     +|++|+.|++|+
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~s~D~~i~  132 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-----MIISGSRDKTIK  132 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-----EEEEEETTSCEE
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-----EEEEEeCCCeEE
Confidence            456789999999999999999999999999999999999999999999999999999999988     799999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCC------CCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCC
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPS------GRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      +||+. +.++..+.+|.. .+.++.|+|.      +..+++++.|+.+++|..     ...+.+| ...|.+++|+|+++
T Consensus       133 vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~sp~g~  209 (319)
T 3frx_A          133 VWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH-NSNINTLTASPDGT  209 (319)
T ss_dssp             EEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC-CSCEEEEEECTTSS
T ss_pred             EEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC-CCcEEEEEEcCCCC
Confidence            99985 567777877776 8999999995      458999999999777643     2345566 56899999999999


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec--------ccCc
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE--------GHLK  365 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~--------~h~~  365 (471)
                      +|++++.||+|++||+.+++.+..+.. ..+|.+++|+|++.+|++++. +.+++|++..+..+..+.        .|..
T Consensus       210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCc
Confidence            999999999999999999998888875 468999999999999988875 459999999887766654        3456


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      .+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus       288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             ceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            7999999999999999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-36  Score=284.25  Aligned_cols=245  Identities=20%  Similarity=0.294  Sum_probs=216.4

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.     +|++|+.||+|
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~sgs~D~~v  121 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-----YVLSGSDDLTV  121 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-----EEEEEETTSCE
T ss_pred             eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-----EEEEECCCCeE
Confidence            3456778999999999999999999999999999999999999999999999999999999998     79999999999


Q ss_pred             EEEeCCCCc-ceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECC--CCCE
Q psy11350        224 KLWSLDKDT-PLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHP--SGRF  294 (471)
Q Consensus       224 ~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~--~~~~  294 (471)
                      ++||+.++. ....+.+|.. .|.+++|+| ++..+++++.|+.+++|..     ...+..+....+..+.|+|  ++.+
T Consensus       122 ~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (304)
T 2ynn_A          122 KLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (304)
T ss_dssp             EEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred             EEEECCCCcchhhhhcccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence            999998774 4456777766 899999999 6789999999999887653     2233334455789999987  7789


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      |++++.|++|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++++..+..|...+.+++|+|
T Consensus       201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--EEEEEeCCCcEEEEECCC
Q psy11350        375 DGY--HLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       375 ~~~--~l~s~s~dg~i~iwd~~~  395 (471)
                      ++.  ++++|+.|| +.+|++.+
T Consensus       281 ~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          281 TGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             TCGGGCEEEEETTE-EEEEECC-
T ss_pred             CCCceEEEEecCCc-eEEEEecc
Confidence            875  577776554 67888764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-37  Score=293.73  Aligned_cols=248  Identities=21%  Similarity=0.288  Sum_probs=214.0

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC--CCceEEEeecCCCCEEEEEEeeC--CCCCCccEEEEEeCCC
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP--ECELVQTFRGHDCNVGAIEFHPL--PSEGAVCSLASCAQDG  221 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~~~~~l~s~~~dg  221 (471)
                      ..+.+|..+|++++|+|++++||+|+.||.|+|||+.  +++.+..+.+|...|++++|+|+  +.     +|++++.||
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-----~l~s~~~dg   79 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDG   79 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-----EEEEEETTS
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-----EEEEeccCC
Confidence            4577999999999999999999999999999999997  66778889999999999999977  65     799999999


Q ss_pred             cEEEEeCCCCc--ceeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEeccccc-------cccCCCCcceEEEEECC
Q psy11350        222 SVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLDTPLA-------NLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       222 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~~~~-------~~~~~~~~~v~~l~~~~  290 (471)
                      .|++||+.+++  .+..+..+.. .|.+++|+|+  +.++++++.|+.+.++....       .+..| ...|.+++|+|
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~v~~~~~~~  157 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNSASWAP  157 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC-TTCEEEEEECC
T ss_pred             EEEEEEcCCCceeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC-CCceEEEEEcC
Confidence            99999999887  6666766665 8999999999  99999999999977754321       23344 56899999999


Q ss_pred             -------------CCCEEEEEecCCeEEEEECCCCc----EEEEeeCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEe
Q psy11350        291 -------------SGRFLGTCCWDHSWRLWDLNQGQ----EVLHQEGHGKPVYCMSFQGD---GSVVATGGLDAFGRVWD  350 (471)
Q Consensus       291 -------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d---~~~l~t~~~dg~i~iwd  350 (471)
                                   ++.+|++++.||.|++||++++.    ....+.+|..+|.+++|+|+   +.+|++++.||.|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                         69999999999999999998764    44667889999999999999   89999999999999999


Q ss_pred             CCCCe-----eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        351 LRTGR-----CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       351 ~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      ++++.     .+.....|...|.+++|+|++++|++++.||.|++|++.......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence            99863     222233488899999999999999999999999999998654433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.6e-36  Score=281.12  Aligned_cols=245  Identities=26%  Similarity=0.480  Sum_probs=219.4

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.     +|++|+.||.|
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~d~~i  131 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSFDESV  131 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-----EEEEEETTSCE
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-----EEEEEeCCCcE
Confidence            3456679999999999999999999999999999999999999999999999999999999988     79999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-----ccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ++||+.+++.+..+..|.. .|.+++|+|++.++++++.|+.+.++...     ..+..+....+..++|+|++++|+++
T Consensus       132 ~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
T 4ery_A          132 RIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  210 (312)
T ss_dssp             EEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence            9999999999999888876 89999999999999999999997775432     23333445579999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEE--EEEe-CCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYC--MSFQ-GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~s-~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      +.||.|++||+++++.+..+.+|...+.+  ..++ +++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  290 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT  290 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence            99999999999999999999888765432  2344 67899999999999999999999999999999999999999999


Q ss_pred             CCEEEEEe--CCCcEEEEECC
Q psy11350        376 GYHLATGS--EDNAVKIWDLR  394 (471)
Q Consensus       376 ~~~l~s~s--~dg~i~iwd~~  394 (471)
                      +.+|++++  .|++|++|+.+
T Consensus       291 ~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          291 ENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSEEEEEECTTTCCEEEEECC
T ss_pred             CCceEEEEccCCccEEEecCC
Confidence            99999997  69999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=287.46  Aligned_cols=238  Identities=24%  Similarity=0.385  Sum_probs=195.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE-------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      +|..+|.+++|+|++++|++|+.|++|+|||+..       .+.+..+.+|...|.+++|+|++.     +|++|+.|++
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-----~las~s~D~~  130 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-----YLATCSRDKS  130 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-----EEEEEETTSC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-----EEEEEeCCCE
Confidence            3999999999999999999999999999999843       456778889999999999999988     8999999999


Q ss_pred             EEEEeCCCC----cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-------ccccccCCCCcceEEEEECCC
Q psy11350        223 VKLWSLDKD----TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-------PLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       223 i~iwd~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-------~~~~~~~~~~~~v~~l~~~~~  291 (471)
                      |++||+...    +++..+..|.. .|.+++|+|++.+|++++.|+.+++|.       ....+.+| ...|.+++|+|+
T Consensus       131 v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~  208 (330)
T 2hes_X          131 VWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKT  208 (330)
T ss_dssp             EEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCS
T ss_pred             EEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCC
Confidence            999999432    35566777776 899999999999999999999987763       23456667 568999999998


Q ss_pred             --CCEEEEEecCCeEEEEECCCC--------cEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe--eEE
Q psy11350        292 --GRFLGTCCWDHSWRLWDLNQG--------QEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR--CIM  358 (471)
Q Consensus       292 --~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~--~~~  358 (471)
                        +.+|++++.|++|++||+..+        .+...+.+ |...|++++|++++ +|++++.||.|+|||..++.  .+.
T Consensus       209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA  287 (330)
T ss_dssp             SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence              678999999999999998754        33444554 89999999999765 88999999999999998874  333


Q ss_pred             E-ecccCc-CEEEEEEcC--CCCEEEEEeCCCcEEEEECCC
Q psy11350        359 F-LEGHLK-SVFSVDFSP--DGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       359 ~-~~~h~~-~v~~~~~sp--~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      . +.+|.. .|.+++|+|  ++++|++|+.||+|+|||+..
T Consensus       288 ~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          288 KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            3 457877 899999999  789999999999999999865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4e-36  Score=287.26  Aligned_cols=242  Identities=21%  Similarity=0.342  Sum_probs=216.2

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ....+..|...|.+++|+|+|.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++.     .|+++
T Consensus        98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~t~  172 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-----QILTA  172 (354)
T ss_dssp             EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-----EEEEE
T ss_pred             cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-----EEEEE
Confidence            34456679999999999999999999999999999998643      34567788999999999999987     79999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC--CCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECC
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~  290 (471)
                      +.|++|++||+.+++++..+.+|.. .|.++.|+|  ++.++++++.|+.+.+|..     ...+..| ...|.+++|+|
T Consensus       173 s~D~~v~lwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p  250 (354)
T 2pbi_B          173 SGDGTCALWDVESGQLLQSFHGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYP  250 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECT
T ss_pred             eCCCcEEEEeCCCCeEEEEEcCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeC
Confidence            9999999999999999999998876 899999987  5789999999999777643     3345566 56899999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGH--GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF  368 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  368 (471)
                      ++.+|++++.|++|++||+++++.+..+..+  ...+.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|+
T Consensus       251 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~  330 (354)
T 2pbi_B          251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS  330 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence            9999999999999999999998877666543  35789999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      +++|+|+|++|++|+.||+|+||+
T Consensus       331 ~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-36  Score=288.26  Aligned_cols=243  Identities=19%  Similarity=0.338  Sum_probs=204.7

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...+.+|..+|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.     +|++++.|++|+
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-----~l~s~~~d~~i~  143 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-----QILSAGAEREIK  143 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-----EEEEEETTSCEE
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-----EEEEEcCCCEEE
Confidence            456789999999999999999999999999999999999999999999999999999999998     799999999999


Q ss_pred             EEeCCCCcceeeec---CCCCcceEEEEECCCC----------CEEEEEeCCCeEEecccc----ccccCCCCcceEEEE
Q psy11350        225 LWSLDKDTPLANLE---GHEPFRVSRIKFHPSG----------RFLGTCCWDHSWRLDTPL----ANLEGHEPFRVSRIK  287 (471)
Q Consensus       225 iwd~~~~~~~~~~~---~~~~~~v~~~~~s~~~----------~~i~~~~~d~~~~~~~~~----~~~~~~~~~~v~~l~  287 (471)
                      +||+... ......   .|.. .+.+++|+|++          .++++++.|+.+.+|...    ..+.+| ...|.+++
T Consensus       144 ~wd~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-~~~v~~~~  220 (343)
T 2xzm_R          144 LWNILGE-CKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH-ESNVNHLS  220 (343)
T ss_dssp             EEESSSC-EEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC-SSCEEEEE
T ss_pred             EEeccCC-ceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc-cccceEEE
Confidence            9999743 332222   3333 79999999987          799999999998887532    234555 56899999


Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCC-cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE--Eec---
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQG-QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM--FLE---  361 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~--~~~---  361 (471)
                      |+|++++|++|+.||+|++||+... .....+ .+...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.   
T Consensus       221 ~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~  298 (343)
T 2xzm_R          221 ISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP  298 (343)
T ss_dssp             ECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc
Confidence            9999999999999999999999543 333333 356679999999999887655 58889999998775433  443   


Q ss_pred             --------ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        362 --------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       362 --------~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                              +|...|.+++|+|+|++|++|+.||+|++|++.++.
T Consensus       299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence                    688899999999999999999999999999987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-36  Score=292.78  Aligned_cols=256  Identities=17%  Similarity=0.189  Sum_probs=215.6

Q ss_pred             hccccceeeeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEee-CCCCCCccE
Q psy11350        138 HLTSLSIYCSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHP-LPSEGAVCS  213 (471)
Q Consensus       138 ~~~~~~~~~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~-~~~~~~~~~  213 (471)
                      .+..+.....+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| ++.     +
T Consensus        59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----~  133 (383)
T 3ei3_B           59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN-----Q  133 (383)
T ss_dssp             HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE-----E
T ss_pred             cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC-----E
Confidence            345667777889999999999999999 999999999999999999888877765  6999999999999 445     7


Q ss_pred             EEEEeCCCcEEEEeCCCCcceeeecCCC--CcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEE
Q psy11350        214 LASCAQDGSVKLWSLDKDTPLANLEGHE--PFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIK  287 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~  287 (471)
                      |++++.|+.|++||+.+ ..+..+..+.  ...|.+++|+|+++++++++.|+.+.++..    ...+..| ...|.+++
T Consensus       134 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h-~~~v~~~~  211 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLH-KAKVTHAE  211 (383)
T ss_dssp             EEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECS-SSCEEEEE
T ss_pred             EEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccC-CCcEEEEE
Confidence            99999999999999975 5555555443  247999999999999999999999777653    3345556 56899999


Q ss_pred             ECCCCC-EEEEEecCCeEEEEECCC----CcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        288 FHPSGR-FLGTCCWDHSWRLWDLNQ----GQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       288 ~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      |+|+++ +|++++.|++|++||+++    +..+..+ +|...|++++|+| ++.+|++++.|+.|++||+++++.+..+.
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            999999 999999999999999997    5566555 6999999999999 99999999999999999999987766665


Q ss_pred             ccC-----------------cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        362 GHL-----------------KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       362 ~h~-----------------~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|.                 +.+..++|+|++++  +|+.||.|++||+.+++++..+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence            443                 34555677777766  77899999999999998876654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.4e-36  Score=284.34  Aligned_cols=252  Identities=22%  Similarity=0.302  Sum_probs=218.3

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceEEEeecCCCCEEEEEEeeC--CCCCCccEEEEEeC
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC----ELVQTFRGHDCNVGAIEFHPL--PSEGAVCSLASCAQ  219 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~--~~~~~~~~l~s~~~  219 (471)
                      ..+.||.++|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|.  +.     +|++++.
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-----~l~s~~~   79 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-----IIASASY   79 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-----EEEEEET
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-----EEEEEcC
Confidence            456799999999999999999999999999999999876    467778899999999999994  65     7999999


Q ss_pred             CCcEEEEeCCCC---------cceeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEeccccc-----cc--------
Q psy11350        220 DGSVKLWSLDKD---------TPLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLDTPLA-----NL--------  275 (471)
Q Consensus       220 dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~~~~-----~~--------  275 (471)
                      ||.|++||+.++         +.+..+..+.. .|.+++|+|+  +.++++++.|+.+.++....     .+        
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCC-ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence            999999999877         44666776665 8999999999  99999999999977754211     11        


Q ss_pred             ----cCCCCcceEEEEECCC---CCEEEEEecCCeEEEEECCCCcE--EEEeeCCCCCeEEEEEeCCC----CEEEEEeC
Q psy11350        276 ----EGHEPFRVSRIKFHPS---GRFLGTCCWDHSWRLWDLNQGQE--VLHQEGHGKPVYCMSFQGDG----SVVATGGL  342 (471)
Q Consensus       276 ----~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~----~~l~t~~~  342 (471)
                          .......+.+++|+|+   +.+|++++.++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                1123557999999997   89999999999998888887765  66778899999999999998    89999999


Q ss_pred             CCeEEEEeCCCC----------------------------------------------eeEEEecccCcCEEEEEEcCCC
Q psy11350        343 DAFGRVWDLRTG----------------------------------------------RCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       343 dg~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      ||.|++||++++                                              +++..+.+|...|++++|+|++
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            999999999875                                              6777888999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheec
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++|++|+.||.|++||+.+++.+..+.
T Consensus       319 ~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             CCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             CEEEEecCCCcEEEEecCcCcchhhee
Confidence            999999999999999999987766544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.5e-37  Score=297.70  Aligned_cols=263  Identities=21%  Similarity=0.336  Sum_probs=223.3

Q ss_pred             chhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-------ceEEEeecCCCCEE
Q psy11350        126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVG  198 (471)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~  198 (471)
                      .++.++.|+...    ......+.+|...|.+++|+|+|++|++|+.|+.|++|++.+.       .....+.+|.+.|.
T Consensus        86 ~D~~v~iWd~~~----~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~  161 (380)
T 3iz6_a           86 QDGRLIVWNALT----SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS  161 (380)
T ss_dssp             TTSEEEEEETTT----TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred             CCCeEEEEECCC----CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence            445555555432    2334567799999999999999999999999999999998653       23456789999999


Q ss_pred             EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee-----cCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccc-
Q psy11350        199 AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL-----EGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTP-  271 (471)
Q Consensus       199 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~-  271 (471)
                      ++.|+|++..    .|++|+.|++|++||+.+++.+..+     .+|.. .|.++.|++ ++.++++|+.|+.+++|.. 
T Consensus       162 ~~~~~~~~~~----~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~  236 (380)
T 3iz6_a          162 SCQYVPDQET----RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLR  236 (380)
T ss_dssp             CCBCCSSSSS----CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred             EEEEecCCCC----EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence            9999997653    6999999999999999999888776     34444 899999977 8899999999999777643 


Q ss_pred             -----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCC-------CCeEEEEEeCCCCEEEE
Q psy11350        272 -----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG-------KPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       272 -----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~d~~~l~t  339 (471)
                           ...+.+| ...|.+++|+|++++|++++.||+|++||+++++.+..+..+.       ..|++++|+|+|.+|++
T Consensus       237 ~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          237 ITSRAVRTYHGH-EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             TTCCCCEEECCC-SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred             CCCcceEEECCc-CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence                 3345566 5689999999999999999999999999999998887775543       24899999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEe----cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFL----EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      |+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|.+|++|+.||+|++|++...+.
T Consensus       316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            999999999999999888777    68999999999999999999999999999999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=299.96  Aligned_cols=301  Identities=17%  Similarity=0.209  Sum_probs=228.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEeecCC------------CCEEEEEEeeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-----------LVQTFRGHD------------CNVGAIEFHPLP  206 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~~~~  206 (471)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            468999999999999999999999999999998876           578889998            889999999997


Q ss_pred             --CCCCccEEEEEeCCCcEEEEeCCCCcce---------------------------------------eee-cCCCCcc
Q psy11350        207 --SEGAVCSLASCAQDGSVKLWSLDKDTPL---------------------------------------ANL-EGHEPFR  244 (471)
Q Consensus       207 --~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~~-~~~~~~~  244 (471)
                        .     .|++++.||+|++||+.++...                                       ..+ ..|.. .
T Consensus       106 ~~~-----~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~  179 (447)
T 3dw8_B          106 NAA-----QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY-H  179 (447)
T ss_dssp             SSS-----EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS-C
T ss_pred             Ccc-----eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc-c
Confidence              4     7999999999999998764331                                       122 34444 8


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEeccccc-------------cccCCCCcceEEEEECCCC-CEEEEEecCCeEEEEECC
Q psy11350        245 VSRIKFHPSGRFLGTCCWDHSWRLDTPLA-------------NLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-------------~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~  310 (471)
                      |.+++|+|++++++++ .|+.+.+|....             .+..| ...|.+++|+|++ ++|++++.||+|++||++
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            9999999999999998 799877764431             23355 5689999999998 999999999999999999


Q ss_pred             CCcE----EEEeeCCCC------------CeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CeeEEEecccCcC-------
Q psy11350        311 QGQE----VLHQEGHGK------------PVYCMSFQGDGSVVATGGLDAFGRVWDLRT-GRCIMFLEGHLKS-------  366 (471)
Q Consensus       311 ~~~~----~~~~~~~~~------------~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~h~~~-------  366 (471)
                      +++.    +..+..|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.+|...       
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            9886    678888876            8999999999999999998 9999999997 8888888888642       


Q ss_pred             --------EEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchh
Q psy11350        367 --------VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSA  438 (471)
Q Consensus       367 --------v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  438 (471)
                              +..++|+|++.+|++|+.||.|++||+.+++.+. +........ .........+  ... ...      ..
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~-~~~~~~~~~~--~~~-~~~------~~  405 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNK-PRTVLKPRKV--CAS-GKR------KK  405 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCC-TTCBCCCCCE--ECS-SCC------CT
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccc-cccccCCccc--ccc-CCc------cc
Confidence                    3349999999999999999999999999988763 222111100 0000000000  000 000      00


Q ss_pred             hhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        439 LKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       439 ~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      .......+.+...+..++|+|+|.+||+.+..
T Consensus       406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~  437 (447)
T 3dw8_B          406 DEISVDSLDFNKKILHTAWHPKENIIAVATTN  437 (447)
T ss_dssp             TCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred             ccccccccccCCceeEEEECCCCCEEEEEecc
Confidence            01111233344567889999999999998753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=292.81  Aligned_cols=313  Identities=13%  Similarity=0.186  Sum_probs=242.0

Q ss_pred             eecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeC----CCCc------eEEEeec----------CCCCEEEEEEeeCC
Q psy11350        148 QVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTV----PECE------LVQTFRG----------HDCNVGAIEFHPLP  206 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~~~~~  206 (471)
                      ...|..+|++++|+|+++ +||+|+.||.|++|++    .+++      ....+..          |...|.+++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            346779999999999999 9999999999999999    8887      4555554          68899999999998


Q ss_pred             CCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCc
Q psy11350        207 SEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPF  281 (471)
Q Consensus       207 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~  281 (471)
                      .     +|++++.||.|++|| .++..+..+..|.. .|.+++|+|+++++++++.|+.+.++..     ...+..+ ..
T Consensus       121 ~-----~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~  192 (425)
T 1r5m_A          121 N-----SIVTGVENGELRLWN-KTGALLNVLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK-ET  192 (425)
T ss_dssp             S-----EEEEEETTSCEEEEE-TTSCEEEEECCCCS-CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             C-----EEEEEeCCCeEEEEe-CCCCeeeeccCCCc-cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc-cc
Confidence            8     799999999999999 67788888887776 8999999999999999999999776543     2223333 22


Q ss_pred             c---------------eEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy11350        282 R---------------VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG  346 (471)
Q Consensus       282 ~---------------v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i  346 (471)
                      .               +.++.|+|++ .+++++.+|.|++||+.+++.+..+..|..+|.+++|+|++.+|++++.|+.|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             -------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            2               8889999874 58899999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC---------Cccceeeccc
Q psy11350        347 RVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP---------NSIGVTSLLT  417 (471)
Q Consensus       347 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~  417 (471)
                      ++||+++++++..+.+|...|.+++|+|++ +|++++.||.|++||+++++++..+..+..         ....+++...
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             EEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence            999999999999999999999999999999 999999999999999999988876654321         2222333333


Q ss_pred             cceeeeecccCCCcc-cccchhh--------hcccccceee--e-cccceeeeecCCeEEEeecC
Q psy11350        418 DLYIDVLESLNPGIG-NIISSAL--------KEQVEPIPLL--L-DIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       418 d~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~--~-~~~~l~fs~dg~~lA~~~~~  470 (471)
                      +..+.+|........ .......        ...+..+...  . .+..++|+|+|++||+++.+
T Consensus       351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence            444444443322100 0000000        0022233322  2 67899999999999998765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-35  Score=278.82  Aligned_cols=243  Identities=19%  Similarity=0.324  Sum_probs=212.2

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---EEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL---VQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ...+|..+|++++|+|++++|++++ ||.|++||+.++..   ...+.  .|...|.+++|+|++.     +|++++.||
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~  119 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEAS  119 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-----EEEEEESSS
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC-----EEEEEcCCC
Confidence            4458999999999999999999999 99999999987653   33333  7899999999999987     799999999


Q ss_pred             cEEEEeCCCCc--ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCE
Q psy11350        222 SVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       222 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      .|++||+.+++  ....+..+.. .+.+++|+|+++++++++.++.+.++..     ...+..| ...+.+++|+|++++
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~  197 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTK  197 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSE
T ss_pred             cEEEEECCCCCcceeeecccCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEECCCCCE
Confidence            99999998887  4555666655 8999999999999999999999776542     3344555 568999999999999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      |++++.||.|++||+++++.+..+. |..++.+++|+|++.+|++++.++.|++||+++++.. .+..|...|.+++|+|
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~  275 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY  275 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT
T ss_pred             EEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC
Confidence            9999999999999999998877764 7888999999999999999999999999999988754 6778999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccch
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      ++++|++++.||.|++||+.+++.+
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEecCCCcEEEEECCCCeEE
Confidence            9999999999999999999988765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-36  Score=296.65  Aligned_cols=306  Identities=15%  Similarity=0.121  Sum_probs=239.3

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .+++++|+|++++|++|+.||.|++||+.+++....+..| ..+....|+|++.     +|++++.||.|++||+.+++.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMR-----RFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSC-----EEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCC-----EEEEEECCCCEEEEeCCCcce
Confidence            4557899999999999999999999999988777666666 4444557788887     799999999999999999888


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      ...+..|.. .|.+++|+|+++++++++.|+.+.+|..     ...+.+| ...|.+++|+|++++|++++.||+|++||
T Consensus       132 ~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          132 REIDQAHVS-EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             EEETTSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eeecccccC-ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            888777776 8999999999999999999999777543     3445566 66899999999999999999999999999


Q ss_pred             CCCCcEEEEeeC---CCCCeEEEE---------------------EeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-cc
Q psy11350        309 LNQGQEVLHQEG---HGKPVYCMS---------------------FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GH  363 (471)
Q Consensus       309 ~~~~~~~~~~~~---~~~~v~~~~---------------------~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~h  363 (471)
                      +++++.+..+..   |...+.+++                     |+|++++|++|+.||.|++||+++++.+..+. .|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  289 (420)
T 3vl1_A          210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF  289 (420)
T ss_dssp             TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT
T ss_pred             CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc
Confidence            999998888764   344455554                     57889999999999999999999998777665 58


Q ss_pred             CcCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCccc-hheecccCCCc---------cceeeccccceeeeecccCCCcc
Q psy11350        364 LKSVFSVDFSPDGY-HLATGSEDNAVKIWDLRKRRL-LKWCTQLLPNS---------IGVTSLLTDLYIDVLESLNPGIG  432 (471)
Q Consensus       364 ~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~  432 (471)
                      ...|.+++|+|++. +|++|+.||.|++||+++++. +..+..+....         ..+++...|..+.+|....+...
T Consensus       290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCC
Confidence            88999999999998 999999999999999998754 55555433322         24455566677777776554322


Q ss_pred             cccchhhhcccccceeeecccceeeeecCC----eEEEee
Q psy11350        433 NIISSALKEQVEPIPLLLDIQKLTFKFDSD----LHAMVL  468 (471)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~----~lA~~~  468 (471)
                      ..+... ............+..++|+|||+    ++|+..
T Consensus       370 ~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          370 RPAIEF-ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             SCEECT-TSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             ccceec-cCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            211110 11111222334678999999999    566544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=297.22  Aligned_cols=312  Identities=17%  Similarity=0.210  Sum_probs=249.4

Q ss_pred             CCcCeEEEEEecCCC-EEEEE----------eCCCcEEEEeCCCCc---eEEEeecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        151 DTRPISYCSFSPDSQ-HVATA----------SWSGLCKLWTVPECE---LVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       151 h~~~V~~~~~s~~~~-~l~tg----------~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      +...|.+++|+|+++ +|++|          +.||.|+|||+.++.   .+..+ .|...|.+++|+|++.     +|++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-----~l~~   84 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK-----IIAG   84 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS-----CEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC-----eEEE
Confidence            445788999999987 89999          889999999998875   33333 5889999999999998     6999


Q ss_pred             EeCCCcEEEEeCCC----CcceeeecCCCCcceEEEEECCC-CCEEEEEeCCCeEEecccccc--------------ccC
Q psy11350        217 CAQDGSVKLWSLDK----DTPLANLEGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLDTPLAN--------------LEG  277 (471)
Q Consensus       217 ~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~s~~-~~~i~~~~~d~~~~~~~~~~~--------------~~~  277 (471)
                      ++.||.|++||+.+    ...+..+..|.. .|.+++|+|+ +.++++++.|+.+.++.....              ...
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  163 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS  163 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred             EccCCeEEEeecccccccccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence            99999999999987    346777777776 8999999998 899999999999877643221              123


Q ss_pred             CCCcceEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeCC------CCCeEEEEEeCCC-CEEEEEeCCC---eE
Q psy11350        278 HEPFRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQEVLHQEGH------GKPVYCMSFQGDG-SVVATGGLDA---FG  346 (471)
Q Consensus       278 ~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~d~-~~l~t~~~dg---~i  346 (471)
                      | ...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++ .+|++++.|+   .|
T Consensus       164 ~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          164 S-VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             S-SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             C-CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            3 568999999998 789999999999999999999998888776      7899999999987 6999999998   99


Q ss_pred             EEEeCCCC-eeEEEec-ccCcCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCccchheecccC---------CCc-ccee
Q psy11350        347 RVWDLRTG-RCIMFLE-GHLKSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL---------PNS-IGVT  413 (471)
Q Consensus       347 ~iwd~~~~-~~~~~~~-~h~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~~-~~~~  413 (471)
                      ++||++++ .++..+. +|...|.+++|+| ++.+|++++.||.|++||+++++++..+..+.         +.. ..++
T Consensus       243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred             EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence            99999986 6777787 8999999999999 99999999999999999999999888775432         222 4566


Q ss_pred             eccccceeeeecccCCCcccccch--------------h-----hhcccccc------eeeecccceeeeecCCeEEEee
Q psy11350        414 SLLTDLYIDVLESLNPGIGNIISS--------------A-----LKEQVEPI------PLLLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       414 ~~~~d~~~~~~~~~~~~~~~~~~~--------------~-----~~~~~~~~------~~~~~~~~l~fs~dg~~lA~~~  468 (471)
                      +...|..+.+|.............              .     .......+      .....+..++|+|||++||+.+
T Consensus       323 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~  402 (416)
T 2pm9_A          323 CASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITP  402 (416)
T ss_dssp             ECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCT
T ss_pred             EEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeC
Confidence            667788888888765532221100              0     00000000      0223456899999999999887


Q ss_pred             cC
Q psy11350        469 NQ  470 (471)
Q Consensus       469 ~~  470 (471)
                      ++
T Consensus       403 ~d  404 (416)
T 2pm9_A          403 DG  404 (416)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=275.63  Aligned_cols=252  Identities=21%  Similarity=0.310  Sum_probs=222.1

Q ss_pred             cccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      ..+.....+.+|.++|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.     +|++++.
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~   79 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE-----LLLFGGK   79 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT-----EEEEEET
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC-----EEEEecC
Confidence            345667788999999999999 9999999999999999999999999999999999999999999988     7999999


Q ss_pred             CCcEEEEeCCCC---cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc---ccccccCCCCcceEEEEECC-CC
Q psy11350        220 DGSVKLWSLDKD---TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT---PLANLEGHEPFRVSRIKFHP-SG  292 (471)
Q Consensus       220 dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~  292 (471)
                      ||.|++|++...   +.+..+..|.. .|.++.|  ++.++++++.|+.+.++.   ....+..| ...+.++.|+| ++
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~v~~~~~~~~~~  155 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAH-NASVWDAKVVSFSE  155 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECC-SSCEEEEEEEETTT
T ss_pred             CCeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccC-CCceeEEEEccCCC
Confidence            999999998654   45666777766 8999999  688999999999977764   23344555 56899999988 89


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      ++|++++.||.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++++..+.+|...|++++
T Consensus       156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  232 (313)
T 3odt_A          156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK  232 (313)
T ss_dssp             TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence            9999999999999999  4566777776 899999999999988 89999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      |+|++ .|++++.||.|++||+++++++..+..+
T Consensus       233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             EecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence            99999 5899999999999999999888776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.3e-37  Score=300.16  Aligned_cols=222  Identities=18%  Similarity=0.226  Sum_probs=183.7

Q ss_pred             cccceeeeeecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      ..+.......+|...|+||+|+| ++++||+|+.||.|+|||+.+++.  ...+.+|.+.|++|+|+|.+..    +|++
T Consensus       107 ~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~----~l~s  182 (435)
T 4e54_B          107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN----QFYA  182 (435)
T ss_dssp             TTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT----EEEE
T ss_pred             cceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC----EEEE
Confidence            34445556778999999999999 567999999999999999987654  4455689999999999985433    8999


Q ss_pred             EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEE
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      |+.||+|++||++++........+..                                     ...+.+++|+|++++|+
T Consensus       183 ~s~D~~v~iwd~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~l~  225 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNILRVFASSDTI-------------------------------------NIWFCSLDVSASSRMVV  225 (435)
T ss_dssp             ECSSSCEEEEETTSCEEEEEECCSSC-------------------------------------SCCCCCEEEETTTTEEE
T ss_pred             EeCCCEEEEeeccCCceeEEeccCCC-------------------------------------CccEEEEEECCCCCEEE
Confidence            99999999999976533222222111                                     33578899999999999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCeeEE---EecccCcCEEEEEE
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGRCIM---FLEGHLKSVFSVDF  372 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~  372 (471)
                      +|+.||.|++||++. +.+..+.+|...|++++|+|++. +|++|+.|+.|+|||+++++...   ...+|...|++++|
T Consensus       226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  304 (435)
T 4e54_B          226 TGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF  304 (435)
T ss_dssp             EECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCB
T ss_pred             EEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeE
Confidence            999999999999964 56778889999999999999875 78899999999999998875443   33579999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|+|.+|++|+.||.|+|||+.+++....+.
T Consensus       305 spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          305 SPDGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             CTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             CCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence            9999999999999999999999988766554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-35  Score=283.94  Aligned_cols=240  Identities=15%  Similarity=0.219  Sum_probs=213.7

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ..|..+|++++|+|++++|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|++.     +|++++.||.|++|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-----RIVTCGTDRNAYVW   79 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-----EEEEEETTSCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC-----EEEEEcCCCeEEEE
Confidence            4599999999999999999999999999999999887  8889999999999999999987     79999999999999


Q ss_pred             eCCCCcceeee--cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc--------cccccCCCCcceEEEEECCCCCEEE
Q psy11350        227 SLDKDTPLANL--EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP--------LANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       227 d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      |+.+++....+  ..+.. .+.+++|+|+++++++++.++.+.++..        ...+...+...|.+++|+|++++|+
T Consensus        80 d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EEETTEEEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             ECCCCeeeeeEEeecCCC-ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            99888755443  34443 8999999999999999999998666432        1222233366899999999999999


Q ss_pred             EEecCCeEEEEEC------------------CCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy11350        297 TCCWDHSWRLWDL------------------NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM  358 (471)
Q Consensus       297 ~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~  358 (471)
                      +++.||.|++||+                  ..++.+..+.+|...|.+++|+|++.+|++++.||.|++||+++++++.
T Consensus       159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            9999999999995                  4678888888999999999999999999999999999999999999999


Q ss_pred             EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        359 FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .+..|...|.+++|+|++.+|++| .|+.|++|++..
T Consensus       239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999999988887 899999999988

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-34  Score=286.81  Aligned_cols=246  Identities=20%  Similarity=0.328  Sum_probs=217.0

Q ss_pred             ceeeeeecCCcCe-EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        143 SIYCSQVGDTRPI-SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       143 ~~~~~~~gh~~~V-~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +....+.+|...| .++.+  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++      ++++|+.||
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~------~l~s~s~dg  183 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG------ILVSGSTDR  183 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT------EEEEEETTS
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC------EEEEEeCCC
Confidence            4556788999886 55555  56899999999999999999999999999999999999999876      599999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEEC--CCCCEEEEEeCCCeEEecccc---------------------------
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFH--PSGRFLGTCCWDHSWRLDTPL---------------------------  272 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~i~~~~~d~~~~~~~~~---------------------------  272 (471)
                      +|++||+.+++.+..+..|.. .|.+++|+  +++.++++++.|+.+.++...                           
T Consensus       184 ~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSS-CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CEEEEECCCCcEEEEECCCCC-ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999999999988876 89999998  688999999999997765322                           


Q ss_pred             -ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        273 -ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       273 -~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                       ..+.+| ...+.++  +++++++++++.||.|++||+++++++..+.+|...|.+++|+|++.+|++|+.||.|++||+
T Consensus       263 ~~~~~~~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~  339 (464)
T 3v7d_B          263 VGVLRGH-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL  339 (464)
T ss_dssp             EEEECCC-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             EEEccCc-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence             123334 3355555  677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      ++++++..+.+|...|.+++|+  +.+|++|+.||.|++||+.+++....+
T Consensus       340 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          340 ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence            9999999999999999999997  589999999999999999988765544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.3e-35  Score=323.99  Aligned_cols=243  Identities=23%  Similarity=0.380  Sum_probs=220.6

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.     +|++++.||+|++
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-----YIATCSADKKVKI  683 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEE
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-----EEEEEeCCCeEEE
Confidence            35679999999999999999999999999999999999999999999999999999999998     7999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECC--CCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ||+.+++.+..+..|.. .|.+++|+|  ++.++++++.|+.+.+|..     ...+.+| ...|.+++|+|++++|+++
T Consensus       684 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~  761 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSE-QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-TNSVNHCRFSPDDELLASC  761 (1249)
T ss_dssp             EETTTCCEEEEEECCSS-CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-SSCEEEEEECSSTTEEEEE
T ss_pred             EECCCCceEEEEcCCCC-cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-CCCEEEEEEecCCCEEEEE
Confidence            99999999999998877 899999999  5568999999999777543     3345566 5689999999999999999


Q ss_pred             ecCCeEEEEECCCCcEEEEe-------------------------------------------------------eCCCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQ-------------------------------------------------------EGHGK  323 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~-------------------------------------------------------~~~~~  323 (471)
                      +.||+|++||+.+++....+                                                       .+|..
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~  841 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS  841 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence            99999999999776543322                                                       26788


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .|.+++|+|++.++++++.||.|++||+.++..+..+.+|...|.+++|+|+|.+|++++.||.|++||+.+
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-36  Score=293.77  Aligned_cols=239  Identities=13%  Similarity=0.150  Sum_probs=203.9

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC--ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ...|.++|++++|+|++++|++|+.||.|+|||+.++  +.+..+.+|...|.+++|+|++.     +|++++.||+|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~s~d~~v~v   81 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN-----RIVTCSQDRNAYV   81 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC-----CEEEEETTSSEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC-----EEEEEeCCCeEEE
Confidence            3457789999999999999999999999999999988  77888999999999999999987     6999999999999


Q ss_pred             EeCCCCc---ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc--------cccccCCCCcceEEEEECCCCCE
Q psy11350        226 WSLDKDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP--------LANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       226 wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      ||+.++.   ....+..|.. .|.+++|+|++++|++++.|+.+.++..        ...+...+...|.+++|+|++++
T Consensus        82 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             C------CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             EEcCCCCceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            9998877   5666666665 8999999999999999999999777532        34455523678999999999999


Q ss_pred             EEEEecCCeEEEEECC------------------CCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        295 LGTCCWDHSWRLWDLN------------------QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                      |++++.|++|++||+.                  .++++..+ +|...|++++|+|++++|++++.||.|++||+.++++
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            9999999999999985                  34456666 8999999999999999999999999999999999987


Q ss_pred             ----EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        357 ----IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       357 ----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                          +..+.+|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence                77888999999999999999999998766665 67665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-34  Score=284.36  Aligned_cols=306  Identities=21%  Similarity=0.305  Sum_probs=247.6

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.||.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|++  .     ++++|+.||
T Consensus       108 ~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-----~l~s~~~dg  179 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--N-----IIISGSTDR  179 (445)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--T-----EEEEEETTS
T ss_pred             cceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--C-----EEEEEeCCC
Confidence            3345678899988643 3566789999999999999999999999999999999999999983  3     799999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      +|++||+.+++.+..+..|.. .|.++.|+  +..+++++.|+.+.++..     ...+.+| ...|.++.|  ++++++
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~  253 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTS-TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DGRRVV  253 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSS-CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CSSCEE
T ss_pred             eEEEEECCcCcEEEEECCCCC-cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CCCEEE
Confidence            999999999999999988876 89999995  678999999999777543     3345555 568999999  688999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      +++.||.|++||+++++.+..+.+|...|.+++|  ++.++++|+.||.|++||+++++++..+.+|...+.++.++  +
T Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~  329 (445)
T 2ovr_B          254 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--D  329 (445)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--T
T ss_pred             EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--C
Confidence            9999999999999999999999999999999999  78899999999999999999999999999999999998884  6


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheecccCCCccc----------eeeccccceeeeecccCCCcccccchhhhcccccc
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIG----------VTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPI  446 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (471)
                      .+|++|+.||.|++||+++++++..+.........          +++...|+.+.+|+.........+...     ..-
T Consensus       330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~  404 (445)
T 2ovr_B          330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL-----ESG  404 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC-----TTG
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecc-----ccC
Confidence            79999999999999999999998887654333223          333344455555554433211111000     001


Q ss_pred             eeeecccceeeeecCCeEEEeecC
Q psy11350        447 PLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       447 ~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      .....+..++|+|+|.+||+++.+
T Consensus       405 ~~~~~v~~~~~s~~~~~la~~~~d  428 (445)
T 2ovr_B          405 GSGGVVWRIRASNTKLVCAVGSRN  428 (445)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSS
T ss_pred             CCCceEEEEEecCCEEEEEEcccC
Confidence            223357889999999999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-36  Score=298.74  Aligned_cols=244  Identities=11%  Similarity=0.020  Sum_probs=197.4

Q ss_pred             cCCcCeEEEEEecCC---------CEEEE-------------------EeCCCcEEEEeCCCCceE----EEeecCCCCE
Q psy11350        150 GDTRPISYCSFSPDS---------QHVAT-------------------ASWSGLCKLWTVPECELV----QTFRGHDCNV  197 (471)
Q Consensus       150 gh~~~V~~~~~s~~~---------~~l~t-------------------g~~dg~i~iwd~~~~~~~----~~~~~h~~~v  197 (471)
                      .+.++|.+++|+|++         ++||+                   ++.|++|+||++.+++..    ..+.+|.+.|
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V  210 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV  210 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence            367889999999886         56666                   447789999999877642    4466788999


Q ss_pred             EEEEEeeCCCC-CCccEEEEEeCCCcEEEEeCCCCcc-----------eeeecCCCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        198 GAIEFHPLPSE-GAVCSLASCAQDGSVKLWSLDKDTP-----------LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       198 ~~l~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                      .+++|+|.+.. ....+|++++.||+|+|||+.++..           ...+.+|.. .|.+++|++++ .|++|+.||.
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~-~v~sv~~s~~~-~lasgs~Dgt  288 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS-LITTFDFLSPT-TVVCGFKNGF  288 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT-CEEEEEESSSS-EEEEEETTSE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC-CEEEEEecCCC-eEEEEeCCCE
Confidence            99999997210 0012799999999999999977642           234556655 89999999864 8999999999


Q ss_pred             EEecccc------ccccCCCCcceEEE--EECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeCCCC--CeEEEEEeCCC
Q psy11350        266 WRLDTPL------ANLEGHEPFRVSRI--KFHPSG-RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK--PVYCMSFQGDG  334 (471)
Q Consensus       266 ~~~~~~~------~~~~~~~~~~v~~l--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~d~  334 (471)
                      +.+|...      ..+.+| ...|.+|  .|+|++ ++|++++.|++|+|||+++++++..+.+|..  .|.+++|+|++
T Consensus       289 V~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~  367 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI  367 (524)
T ss_dssp             EEEEETTBCSSCSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred             EEEEECCCCCCceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence            7775432      235566 5689999  578887 8999999999999999999887766666653  58899999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       335 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      ..+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||+..+
T Consensus       368 ~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          368 YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            99999999999999999999988889999999999999999999999999999999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=281.28  Aligned_cols=249  Identities=16%  Similarity=0.243  Sum_probs=207.5

Q ss_pred             eeeeecCCcCeEEEEEecCCCEE-EEEeC---CCcEEEEeCCCCceEEEe-ecCCCCEEEEEEeeCC---CCCCccEEEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHV-ATASW---SGLCKLWTVPECELVQTF-RGHDCNVGAIEFHPLP---SEGAVCSLAS  216 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l-~tg~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~---~~~~~~~l~s  216 (471)
                      ...+.+|..+|.+++|+|++..+ ++|+.   ||.|++||+.+++..... .+|...|.+++|+|++   .     +|++
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~l~~   85 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR-----YLAT   85 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC-----CEEE
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc-----eEEE
Confidence            34567899999999999999655 56665   899999999988876543 3789999999999983   5     6999


Q ss_pred             EeCCCcEEEEeCCCCc-ceeeecCCCCcceEEEE------ECCCCCEEEEEeCCCeEEeccc------cccccC---CCC
Q psy11350        217 CAQDGSVKLWSLDKDT-PLANLEGHEPFRVSRIK------FHPSGRFLGTCCWDHSWRLDTP------LANLEG---HEP  280 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~------~s~~~~~i~~~~~d~~~~~~~~------~~~~~~---~~~  280 (471)
                      ++.||.|++||+.+++ .+..+..|.. .|.++.      |+|+++++++++.|+.+.++..      ...+..   +..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence            9999999999999888 8888888776 899995      5789999999999999777543      223322   223


Q ss_pred             cceEEEE----ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC---CCCEEEEEeCCCeEEEEeCCC
Q psy11350        281 FRVSRIK----FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG---DGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       281 ~~v~~l~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      ..+.+++    |+|++++|++++.||.|++||+++++... ...|...|.+++|+|   ++.+|++++.||.|++||+++
T Consensus       165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            4788888    78899999999999999999999987644 466889999999999   999999999999999999988


Q ss_pred             CeeEEEec-----ccCcCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCccchh
Q psy11350        354 GRCIMFLE-----GHLKSVFSVDFSPDGY-HLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       354 ~~~~~~~~-----~h~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      ++++..+.     +|...|++++|+|++. +|++|+.||.|++||++.+....
T Consensus       244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  296 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS  296 (357)
T ss_dssp             EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred             CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc
Confidence            76554444     8999999999999998 89999999999999998776543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2e-34  Score=273.75  Aligned_cols=249  Identities=14%  Similarity=0.122  Sum_probs=212.3

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE---LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ..+|...|++++|+|++++|++|+.||.|++|++.++.   ....+.+|...|.+++|+|++..    +|++++.||.|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~   82 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL----QIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE----EEEEEETTSCEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc----EEEEEcCCCeEE
Confidence            45899999999999999999999999999999998877   34556689999999999998751    389999999999


Q ss_pred             EEeC-CCCcceeeecC--CCCcceEEEEECCCCCEEEEEeCCCeEEeccccc------------cccCCCCcceEEEEEC
Q psy11350        225 LWSL-DKDTPLANLEG--HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA------------NLEGHEPFRVSRIKFH  289 (471)
Q Consensus       225 iwd~-~~~~~~~~~~~--~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~------------~~~~~~~~~v~~l~~~  289 (471)
                      +||+ .+++. ..+..  |.. .|.+++|+| +.++++++.|+.+.++....            .........|.+++|+
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             EEEeccCCce-EeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence            9999 77754 55555  555 899999999 99999999999977754321            1111235689999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCC-Cc--EEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCC------eeEEE
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQ-GQ--EVLHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTG------RCIMF  359 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~------~~~~~  359 (471)
                      |++  +++++.|+.|++||+++ +.  .......|...+.+++|+| ++.++++++.||.|++|+++..      +....
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            987  99999999999999998 54  3345567889999999999 9999999999999999999887      77888


Q ss_pred             ecccCc---------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        360 LEGHLK---------SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       360 ~~~h~~---------~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +..|..         .|.+++|+|++++|++|+.||.|++||+.+++++..+..+
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            888865         9999999999999999999999999999999888766543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=289.99  Aligned_cols=313  Identities=15%  Similarity=0.163  Sum_probs=231.2

Q ss_pred             eeeee-ecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCC---Cc---eEEEeecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        144 IYCSQ-VGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPE---CE---LVQTFRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       144 ~~~~~-~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~---~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      ....+ .+|.++|++++|+| ++++|++|+.||.|+|||+.+   +.   ....+ .|...|.+++|+|++.     +|+
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-----~l~  127 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD-----AFA  127 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS-----EEE
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC-----EEE
Confidence            34445 78999999999999 999999999999999999876   33   23333 5899999999999887     799


Q ss_pred             EEeCCCcEEEEeCC---CCcceeeecCC-----------CCcceEEEE--ECCCCCEEEEEeCCCeEEeccc-----ccc
Q psy11350        216 SCAQDGSVKLWSLD---KDTPLANLEGH-----------EPFRVSRIK--FHPSGRFLGTCCWDHSWRLDTP-----LAN  274 (471)
Q Consensus       216 s~~~dg~i~iwd~~---~~~~~~~~~~~-----------~~~~v~~~~--~s~~~~~i~~~~~d~~~~~~~~-----~~~  274 (471)
                      +++.||+|++||+.   +++....+..+           ....+.++.  +++++.++++++.|+.+.++..     ...
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            99999999999994   45443332211           223566666  6789999999999999777543     334


Q ss_pred             ccCC-CCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-CCCCCeEEEEEeC----CCCEEEEEeCCCeEEE
Q psy11350        275 LEGH-EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQG----DGSVVATGGLDAFGRV  348 (471)
Q Consensus       275 ~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~----d~~~l~t~~~dg~i~i  348 (471)
                      +..+ +...|++++|+|++++|++|+.||+|++||+++++++..+. .|..+|++++|+|    ++.+|++|+.||.|++
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            4442 25689999999999999999999999999999999988876 7888999996654    6779999999999999


Q ss_pred             EeCCCCeeEEEecc--------------------------cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        349 WDLRTGRCIMFLEG--------------------------HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       349 wd~~~~~~~~~~~~--------------------------h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      ||+++++++..+.+                          |...|++++|+ ++++|++|+.||.|++||+.+++++..+
T Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence            99999998877764                          44568889999 7789999999999999999999999888


Q ss_pred             cccCCCccceeeccccceeeeecccCCCcccccchhhhcccccc-eeeecccceeeeec--CCeEEEeecC
Q psy11350        403 TQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPI-PLLLDIQKLTFKFD--SDLHAMVLNQ  470 (471)
Q Consensus       403 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~fs~d--g~~lA~~~~~  470 (471)
                      ..+.................+....       +........... .....+..++|+++  +.+|+.++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d  430 (437)
T 3gre_A          367 ISPSRFSDVFIPTQVTANLTMLLRK-------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS  430 (437)
T ss_dssp             ECC--CCCEEEEEEEETTEEEEEEE-------CC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred             ecccccCceEEEEEeecceEEEEEe-------cccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence            7654333222222221111111100       000001111111 12345788899998  7788887764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.8e-35  Score=281.95  Aligned_cols=249  Identities=20%  Similarity=0.262  Sum_probs=210.7

Q ss_pred             eeecCCcCeEEEEEecC----CCEEEEEeCCCcEEEEeCCCCceEEEeec-----CCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        147 SQVGDTRPISYCSFSPD----SQHVATASWSGLCKLWTVPECELVQTFRG-----HDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ...+|..+|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|++.... .+|++|
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~   91 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH-PLLAVA   91 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC-EEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC-CEEEEe
Confidence            44589999999999984    45566666688999999998887776664     567899999999943111 179999


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccc-----cccc---cCCCCcceEEEEE
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTP-----LANL---EGHEPFRVSRIKF  288 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~-----~~~~---~~~~~~~v~~l~~  288 (471)
                      +.||.|++||+.+++.+..+..|.. .|.+++|+| ++.++++++.|+.+.++..     ...+   ..| ...|.+++|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~  169 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADY  169 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC-SSCEEEEEE
T ss_pred             cCCCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc-cCceeEEEE
Confidence            9999999999999999999988776 899999999 9999999999999777543     2223   344 668999999


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEe----------------------------eCCCCCeEEEEEeCCCCEEEEE
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ----------------------------EGHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------~~~~~~v~~~~~s~d~~~l~t~  340 (471)
                      +|++++|++++.||.|++||+++++....+                            .+|...|.+++|+  +.+|+++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            999999999999999999999977544332                            3399999999998  6799999


Q ss_pred             eCCCeEEEEeCCCCee--------------EEEecccCcCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCccchh
Q psy11350        341 GLDAFGRVWDLRTGRC--------------IMFLEGHLKSVFSVDFSPD--GYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       341 ~~dg~i~iwd~~~~~~--------------~~~~~~h~~~v~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      +.|+.|++||+.++..              +..+.+|...|++++|+|+  +++|++|+.||.|++||+.+++++.
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  323 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK  323 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc
Confidence            9999999999987643              7788899999999999999  9999999999999999999987664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=310.81  Aligned_cols=248  Identities=21%  Similarity=0.285  Sum_probs=212.9

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC--CCceEEEeecCCCCEEEEEEeeC--CCCCCccEEEEEeCCC
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP--ECELVQTFRGHDCNVGAIEFHPL--PSEGAVCSLASCAQDG  221 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~~~~~l~s~~~dg  221 (471)
                      ..+.||.++|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|..+|++++|+|+  +.     +|++|+.||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-----~l~s~s~Dg   77 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDG   77 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-----EEEEEETTS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-----EEEEEeCCC
Confidence            3567999999999999999999999999999999997  56778889999999999999987  65     799999999


Q ss_pred             cEEEEeCCCCc--ceeeecCCCCcceEEEEECCC--CCEEEEEeCCCeEEecccc-------ccccCCCCcceEEEEECC
Q psy11350        222 SVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLDTPL-------ANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       222 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d~~~~~~~~~-------~~~~~~~~~~v~~l~~~~  290 (471)
                      .|++||+.+++  .+..+..|.. .|.+++|+|+  +.++++++.|+.+.++...       ..+.+| ...|.+++|+|
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~~~v~~l~~~p  155 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNSASWAP  155 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-SSCEEEEEECC
T ss_pred             eEEEEECCCCcccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-CCceEEEEecC
Confidence            99999998886  6666776766 8999999999  9999999999997775432       223344 56899999999


Q ss_pred             -------------CCCEEEEEecCCeEEEEECCCC----cEEEEeeCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEe
Q psy11350        291 -------------SGRFLGTCCWDHSWRLWDLNQG----QEVLHQEGHGKPVYCMSFQGD---GSVVATGGLDAFGRVWD  350 (471)
Q Consensus       291 -------------~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~d---~~~l~t~~~dg~i~iwd  350 (471)
                                   ++.+|++|+.||+|++||++++    .....+.+|..+|++++|+|+   +.+|++|+.||.|++||
T Consensus       156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                         5899999999999999999877    456678899999999999999   89999999999999999


Q ss_pred             CCCCe-----eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        351 LRTGR-----CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       351 ~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      ++++.     .+.....|...|++++|+|+|.+|++|+.||.|++||+..+....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~  290 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  290 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence            98864     333445688999999999999999999999999999998655433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.3e-34  Score=275.04  Aligned_cols=194  Identities=14%  Similarity=0.110  Sum_probs=164.4

Q ss_pred             CCEEEEEEeeCCCCCCccEEE--EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLA--SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL  272 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~  272 (471)
                      ..+.+++|+|++.     +++  +++.|++|+|||+.+++++..+..+.  .|.+++|+|+|+++++++.++...++...
T Consensus       134 ~~~~~v~fSpDg~-----~la~as~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~fspdg~~l~s~s~~~~~~~~~~~  206 (365)
T 4h5i_A          134 DYTKLVYISREGT-----VAAIASSKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHFSTDGKVVAYITGSSLEVISTVT  206 (365)
T ss_dssp             CCEEEEEECTTSS-----CEEEEESCSSCEEEEEETTTTEEEEEEECSS--CCCEEEECTTSSEEEEECSSCEEEEETTT
T ss_pred             cCEEEEEEcCCCC-----EEEEEECCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEEccCCceEEeccceeEEEEEecc
Confidence            3477899999998     454  45578999999999999888886433  79999999999999999988775543221


Q ss_pred             ------ccccCCCCcceEEEEECCCCCEEEEEecCC----eEEEEECCCCcE----EEEeeCCCCCeEEEEEeCCCCEEE
Q psy11350        273 ------ANLEGHEPFRVSRIKFHPSGRFLGTCCWDH----SWRLWDLNQGQE----VLHQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       273 ------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                            .....| ...|.+++|+|+++++++++.|+    .+++|++.....    ...+.+|..+|++++|+|||++|+
T Consensus       207 ~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la  285 (365)
T 4h5i_A          207 GSCIARKTDFDK-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV  285 (365)
T ss_dssp             CCEEEEECCCCT-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred             CcceeeeecCCC-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence                  122333 56799999999999999999887    688999877653    345778999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEe-cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFL-EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +|+.|++|+|||+++++++..+ .+|...|++++|+|||++|+|||.|++|+|||+..+
T Consensus       286 sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          286 LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999875 789999999999999999999999999999999654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-34  Score=281.52  Aligned_cols=238  Identities=19%  Similarity=0.284  Sum_probs=214.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      +|...|++++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++.     +|++++.||.|++||+.
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT-----HIISMDVENVTILWNVI  179 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS-----EEEEEETTCCEEEEETT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC-----EEEEEecCCeEEEEECC
Confidence            3788999999999999999999999999999 77889999999999999999999988     79999999999999999


Q ss_pred             CCcceeeecCCCCcc---------------eEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEEC
Q psy11350        230 KDTPLANLEGHEPFR---------------VSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~  289 (471)
                      +++.+..+..+.. .               +.++.|+|++ .+++++.++.+.++..     ...+..| ...|.+++|+
T Consensus       180 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~  256 (425)
T 1r5m_A          180 SGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISVLEFN  256 (425)
T ss_dssp             TTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC-SSCEEEEEEE
T ss_pred             CCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC-CCceEEEEEC
Confidence            9998888876654 3               8899999985 4788888888666432     3344455 5689999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEE
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS  369 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  369 (471)
                      |++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+++++++..+..|...|.+
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  335 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA  335 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEE
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        370 VDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       370 ~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      ++|+|++++|++++.||.|++||+++++
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9999999999999999999999999877

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.8e-34  Score=294.63  Aligned_cols=271  Identities=20%  Similarity=0.226  Sum_probs=234.3

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceEEEeecCCCC-EEEEEEee--CCCCCCccEEEEEeCCC
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC----ELVQTFRGHDCN-VGAIEFHP--LPSEGAVCSLASCAQDG  221 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~-v~~l~~~~--~~~~~~~~~l~s~~~dg  221 (471)
                      ..|.+.|++++|+|+|++|++++ ++.|++||+.++    +....+.+|... |.+++|+|  ++.     +|++++.||
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-----~l~s~~~dg   88 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-----YLCSGDESG   88 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-----EEEEEETTS
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-----EEEEecCCC
Confidence            36899999999999999999999 899999999999    899999999999 99999999  888     899999999


Q ss_pred             cEEEEeCCCC--------cceeeecCCCCcceEEEEECCCCCEEEEEeCC----CeEEecc---ccccccCCCCcceEEE
Q psy11350        222 SVKLWSLDKD--------TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLDT---PLANLEGHEPFRVSRI  286 (471)
Q Consensus       222 ~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d----~~~~~~~---~~~~~~~~~~~~v~~l  286 (471)
                      .|++||+.++        .....+..+.. .|.+++|+|+++++++++.+    +.+.++.   ....+.+| ...|.++
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~v~~~  166 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVKSEFQVLAG-PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-SQRINAC  166 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-SSCEEEE
T ss_pred             EEEEEeCCCCcccccccccccchhhcccc-cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecC-CccEEEE
Confidence            9999999754        56666776665 89999999999999999988    4555543   33445566 5689999


Q ss_pred             EECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeCCCC---CeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCeeEEEe-
Q psy11350        287 KFHPSGR-FLGTCCWDHSWRLWDLNQGQEVLHQEGHGK---PVYCMSFQGD-GSVVATGGLDAFGRVWDLRTGRCIMFL-  360 (471)
Q Consensus       287 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~d-~~~l~t~~~dg~i~iwd~~~~~~~~~~-  360 (471)
                      +|+|+++ .|++++.|+.|++||+.+++.+..+.+|..   .|++++|+|+ +++|++++.||.|++||+++++.+..+ 
T Consensus       167 ~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  246 (615)
T 1pgu_A          167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  246 (615)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence            9999998 899999999999999999999999999999   9999999999 999999999999999999999999998 


Q ss_pred             c---ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC-C-----------Cccceeeccccceeeeec
Q psy11350        361 E---GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL-P-----------NSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       361 ~---~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~-----------~~~~~~~~~~d~~~~~~~  425 (471)
                      .   +|...|.+++|+ ++.+|++++.||.|++||+++++.+..+.... +           ....+++...+..+.+|+
T Consensus       247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEE
Confidence            6   899999999999 99999999999999999999999887776541 1           222334444556666665


Q ss_pred             ccC
Q psy11350        426 SLN  428 (471)
Q Consensus       426 ~~~  428 (471)
                      ...
T Consensus       326 ~~~  328 (615)
T 1pgu_A          326 LGH  328 (615)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-35  Score=284.90  Aligned_cols=246  Identities=17%  Similarity=0.264  Sum_probs=214.8

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----CceEEEeecCCCCEEEEEEeeC-CCCCCccEEEEEeCCCcEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPL-PSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~-~~~~~~~~l~s~~~dg~i~  224 (471)
                      +|...|.+++|+|++++|++|+.||.|++||+.+    .+.+..+.+|...|.+++|+|+ +.     +|++++.||.|+
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----~l~s~~~dg~v~  139 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-----VLASGGNNGEIF  139 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-----BEEEECSSSCEE
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC-----EEEEEcCCCeEE
Confidence            6899999999999999999999999999999987    4588889999999999999998 55     799999999999


Q ss_pred             EEeCCCCc------ceeee---cCCCCcceEEEEECCC-CCEEEEEeCCCeEEeccc-----cccccCCC-----CcceE
Q psy11350        225 LWSLDKDT------PLANL---EGHEPFRVSRIKFHPS-GRFLGTCCWDHSWRLDTP-----LANLEGHE-----PFRVS  284 (471)
Q Consensus       225 iwd~~~~~------~~~~~---~~~~~~~v~~~~~s~~-~~~i~~~~~d~~~~~~~~-----~~~~~~~~-----~~~v~  284 (471)
                      +||+.+++      ....+   ..+.. .|.+++|+|+ +.++++++.|+.+.++..     ...+..+.     ...|.
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred             EEECCCCccccccccccccccccCCCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence            99998876      33222   34444 8999999999 789999999999777543     22333332     56799


Q ss_pred             EEEECCCC-CEEEEEecCC---eEEEEECCCC-cEEEEee-CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        285 RIKFHPSG-RFLGTCCWDH---SWRLWDLNQG-QEVLHQE-GHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       285 ~l~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                      +++|+|++ .+|++++.|+   .|++||++++ .++..+. +|...|++++|+| ++.+|++++.||.|++||+++++++
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            99999997 6899999998   9999999986 5667777 8999999999999 9999999999999999999999999


Q ss_pred             EEecccCcCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccchhe
Q psy11350        358 MFLEGHLKSVFSVDFSPDG-YHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       358 ~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      ..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++....
T Consensus       299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            9999999999999999998 8999999999999999998775543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.9e-35  Score=278.82  Aligned_cols=237  Identities=22%  Similarity=0.356  Sum_probs=208.3

Q ss_pred             cCCcCeEEEEEecC----CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEee-CCCCCCccEEEEEeCCCcEE
Q psy11350        150 GDTRPISYCSFSPD----SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP-LPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~  224 (471)
                      .|...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.     +|++++.||.|+
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~s~~~dg~i~  141 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-----LLLSVSKDHALR  141 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-----EEEEEETTSCEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-----EEEEEeCCCeEE
Confidence            37889999999999    67999999999999999999999999999999999999999 666     899999999999


Q ss_pred             EEeCCCCcceeee---cCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc-----cc--------------------
Q psy11350        225 LWSLDKDTPLANL---EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN-----LE--------------------  276 (471)
Q Consensus       225 iwd~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~-----~~--------------------  276 (471)
                      +||+.+++.+..+   ..+.. .|.+++|+|++.++++++.|+.+.++.....     +.                    
T Consensus       142 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          142 LWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             EEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             EEEeecCeEEEEecccccccC-ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            9999999888887   45554 8999999999999999999999777543211     11                    


Q ss_pred             --------CCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE--------------EEEeeCCCCCeEEEEEeCC-
Q psy11350        277 --------GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE--------------VLHQEGHGKPVYCMSFQGD-  333 (471)
Q Consensus       277 --------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~v~~~~~s~d-  333 (471)
                              .| ...|.+++|+  +++|++++.||.|++||+.++..              +..+..|...|++++|+|+ 
T Consensus       221 ~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  297 (366)
T 3k26_A          221 FPDFSTRDIH-RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF  297 (366)
T ss_dssp             CCSEEECSSC-SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred             cCccccccCC-cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence                    14 5679999998  77999999999999999987644              7778899999999999999 


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCe----eEEEeccc--CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        334 -GSVVATGGLDAFGRVWDLRTGR----CIMFLEGH--LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       334 -~~~l~t~~~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                       +++|++|+.||.|++||+.+++    ....+.+|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence             9999999999999999999875    44477777  78999999999999999999999999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.9e-34  Score=315.09  Aligned_cols=310  Identities=22%  Similarity=0.308  Sum_probs=252.6

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.+|...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++..   .++++|+.||.|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~sg~~d~~v  725 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH---LLLATGSNDFFL  725 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSC---CEEEEEETTSCE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCc---eEEEEEeCCCeE
Confidence            34566799999999999999999999999999999999999999999999999999999995431   178999999999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc-----------------------------
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN-----------------------------  274 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~-----------------------------  274 (471)
                      ++||+.+++++..+.+|.. .|.+++|+|+++++++++.|+.+.+|.....                             
T Consensus       726 ~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          726 KLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEETTSSSEEEEECCCSS-CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEECCCcchhheecCCCC-CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            9999999999999998887 8999999999999999999998666432100                             


Q ss_pred             ------------------------------ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCC
Q psy11350        275 ------------------------------LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP  324 (471)
Q Consensus       275 ------------------------------~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  324 (471)
                                                    +...+...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence                                          00022457889999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCC----------------------------------------------------
Q psy11350        325 VYCMSFQGDGSVVATGGLDAFGRVWDLR----------------------------------------------------  352 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~~~dg~i~iwd~~----------------------------------------------------  352 (471)
                      |++++|+|++.+|++++.||.|++||+.                                                    
T Consensus       885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  964 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV  964 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence            9999999999999999999988888743                                                    


Q ss_pred             ---------------------------CCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        353 ---------------------------TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       353 ---------------------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                                                 +++.+..+.+|...|++++|+|+|++|++++.||.|++||+.+++.+....  
T Consensus       965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 1042 (1249)
T 3sfz_A          965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA-- 1042 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBC--
T ss_pred             EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEec--
Confidence                                       233445566789999999999999999999999999999999988764321  


Q ss_pred             CCCc---------cceeeccccceeeeecccCCCcccccchhhhcccccce-eeecccceeeeecCCeEEEeecC
Q psy11350        406 LPNS---------IGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIP-LLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       406 ~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      +...         ..+++...+..+.+|+.......           ..+. ....+..++|+|||++||+++.+
T Consensus      1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-----------~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE-----------RDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp             CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC-----------EEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred             CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee-----------EEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence            1222         23344455556666655443322           1222 23357889999999999998765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.8e-34  Score=279.96  Aligned_cols=249  Identities=19%  Similarity=0.281  Sum_probs=216.7

Q ss_pred             ceeeeeecCCcCeEEEEEecC----C---CEEEEEeCCCcEEEEeCCCCce-----EEEeecC-----CCCEEEEEEe--
Q psy11350        143 SIYCSQVGDTRPISYCSFSPD----S---QHVATASWSGLCKLWTVPECEL-----VQTFRGH-----DCNVGAIEFH--  203 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~----~---~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~--  203 (471)
                      .....+.+|..+|++++|+|+    +   ++|++++.||.|++|++.+++.     ...+..|     ...|.+++|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            345667799999999999999    9   9999999999999999998887     8888888     5999999999  


Q ss_pred             --eCCCCCCccE-EEEEeCCCcEEEEeCCC------Cccee-----eecC------CCCcceEEEEECCCCCEEEEEeCC
Q psy11350        204 --PLPSEGAVCS-LASCAQDGSVKLWSLDK------DTPLA-----NLEG------HEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       204 --~~~~~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~~~------~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                        |++.     + |++++.||.|++||+.+      ++.+.     .+..      .....+.+++|+|++ ++++++.|
T Consensus       133 ~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d  206 (397)
T 1sq9_A          133 NDRLLS-----HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN  206 (397)
T ss_dssp             C----C-----EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred             cCCCCc-----eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC
Confidence              8887     7 99999999999999988      66665     6632      223389999999999 99999999


Q ss_pred             CeEEeccc-----cccccC---C--CCcceEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEEEeeC----------
Q psy11350        264 HSWRLDTP-----LANLEG---H--EPFRVSRIKFHPSGRFLGTCCWD---HSWRLWDLNQGQEVLHQEG----------  320 (471)
Q Consensus       264 ~~~~~~~~-----~~~~~~---~--~~~~v~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~----------  320 (471)
                      +.+.++..     ...+..   |  ....|.+++|+|++++|++++.|   |.|++||+++++.+..+.+          
T Consensus       207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T 1sq9_A          207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG  286 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred             CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence            99777543     233444   3  04579999999999999999999   9999999999999999988          


Q ss_pred             ---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec------cc---------------CcCEEEEEEcCCC
Q psy11350        321 ---HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE------GH---------------LKSVFSVDFSPDG  376 (471)
Q Consensus       321 ---~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~------~h---------------~~~v~~~~~sp~~  376 (471)
                         |...|.+++|+|++.+|++++.||.|++||+++++++..+.      +|               ...|++++|+|++
T Consensus       287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence               99999999999999999999999999999999999999998      88               9999999999998


Q ss_pred             ----------CEEEEEeCCCcEEEEECCCcc
Q psy11350        377 ----------YHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       377 ----------~~l~s~s~dg~i~iwd~~~~~  397 (471)
                                ++|++|+.||.|++||+.+++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                      799999999999999998764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-33  Score=275.34  Aligned_cols=246  Identities=20%  Similarity=0.343  Sum_probs=210.9

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+.+|...|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+.+++|++.       +|++|+.|+.+++|
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-------~l~sgs~d~~i~~~  214 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-------ILSSGSRSGHIHHH  214 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-------EEEEEETTSEEEEE
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-------EEEEEeCCCceeEe
Confidence            44578899999999999999999999999999999999999999999999999988643       79999999999999


Q ss_pred             eCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---------cccccCCCCcceEEEEECCCCC-EE
Q psy11350        227 SLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---------LANLEGHEPFRVSRIKFHPSGR-FL  295 (471)
Q Consensus       227 d~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---------~~~~~~~~~~~v~~l~~~~~~~-~l  295 (471)
                      |..... .+..+..|.. .+..+.|+|++.++++++.|+.+.++..         ......| ...|.+++|+|.+. .+
T Consensus       215 d~~~~~~~~~~~~~h~~-~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          215 DVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             ETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEEEECTTCTTEE
T ss_pred             eecccceeeEEeccccc-ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc-CCceeeeeeCCCcccEE
Confidence            987654 4556677766 8999999999999999999999777532         1223334 56799999999665 55


Q ss_pred             EE--EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCeeEEEecccCcCEEEEE
Q psy11350        296 GT--CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVD  371 (471)
Q Consensus       296 ~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  371 (471)
                      ++  |+.|++|++||+.+++++..+..| ..+.++.|+|++..+++++  .|+.|+|||+.+++++..+.+|.+.|++++
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~  371 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT  371 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            54  457999999999999988888754 5688999999999888765  789999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       372 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      |+|+|.+|+||+.||+|+|||+....+....
T Consensus       372 ~spdg~~l~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          372 MSPDGATVASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             ECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred             EcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence            9999999999999999999999877665543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-33  Score=264.84  Aligned_cols=236  Identities=19%  Similarity=0.289  Sum_probs=211.0

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      +|..+|.+++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|++.     ++++++.||.|++||
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~v~~~d  169 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-----VCFSCCSDGNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-----EEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC-----EEEEEeCCCcEEEEe
Confidence            799999999999999999999999999999999877  6677888999999999999987     799999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---ccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +.+++.+..+..+.. .+.+++|+|+++++++++.|+.+.++...   ..........+.+++|+|++++|++++.++.|
T Consensus       170 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i  248 (337)
T 1gxr_A          170 LHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV  248 (337)
T ss_dssp             TTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcE
Confidence            999999988888776 89999999999999999999997775432   11111235579999999999999999999999


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      ++||+.+++. ..+..|..+|.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.
T Consensus       249 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          249 EVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEET
T ss_pred             EEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecC
Confidence            9999998765 467789999999999999999999999999999999999887554 48899999999999999999999


Q ss_pred             CCcEEEEEC
Q psy11350        385 DNAVKIWDL  393 (471)
Q Consensus       385 dg~i~iwd~  393 (471)
                      ||.|++|++
T Consensus       327 dg~i~iw~~  335 (337)
T 1gxr_A          327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=273.27  Aligned_cols=254  Identities=19%  Similarity=0.263  Sum_probs=209.4

Q ss_pred             ceeeeeecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEee-------------cCCCCEEEEEEeeCCCC
Q psy11350        143 SIYCSQVGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPECELVQTFR-------------GHDCNVGAIEFHPLPSE  208 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~~  208 (471)
                      .....+.+|.++|++++|+| ++++|++|+.||.|++||+.+++....+.             +|...|.+++|+|++..
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            34456678999999999999 99999999999999999999876554443             59999999999994433


Q ss_pred             CCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCC---CEEEEEeCCCeEEecc-----ccccccCCCC
Q psy11350        209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSG---RFLGTCCWDHSWRLDT-----PLANLEGHEP  280 (471)
Q Consensus       209 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~i~~~~~d~~~~~~~-----~~~~~~~~~~  280 (471)
                          +|++++.||.|++||+.+++....+....  .+.++.++|.+   .++++++.++.+.++.     ....+..| .
T Consensus       114 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  186 (408)
T 4a11_B          114 ----MFTSSSFDKTLKVWDTNTLQTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-R  186 (408)
T ss_dssp             ----CEEEEETTSEEEEEETTTTEEEEEEECSS--CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC-C
T ss_pred             ----EEEEEeCCCeEEEeeCCCCccceeccCCC--ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-C
Confidence                79999999999999999998888777433  78999999854   4999999999977643     23445555 5


Q ss_pred             cceEEEEECCCCC-EEEEEecCCeEEEEECCCCc-EEEEe---------------eCCCCCeEEEEEeCCCCEEEEEeCC
Q psy11350        281 FRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQGQ-EVLHQ---------------EGHGKPVYCMSFQGDGSVVATGGLD  343 (471)
Q Consensus       281 ~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~~~~~s~d~~~l~t~~~d  343 (471)
                      ..|.+++|+|++. .|++++.||.|++||++++. .+..+               .+|...|.+++|+|++.+|++++.|
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            6899999999998 58999999999999998765 33333               5788999999999999999999999


Q ss_pred             CeEEEEeCCCC-----------------------------------------------eeEEEecccCcCEEEEEEcCCC
Q psy11350        344 AFGRVWDLRTG-----------------------------------------------RCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       344 g~i~iwd~~~~-----------------------------------------------~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      |.|++||+.++                                               +++..+.+|...|++++|+|++
T Consensus       267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred             CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence            99999998754                                               4456677899999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheec
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++|++|+.||.|++||+.+++++....
T Consensus       347 ~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          347 QELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             TEEEEEETTSCEEEEEECC--------
T ss_pred             CEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            999999999999999999998876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=274.85  Aligned_cols=246  Identities=18%  Similarity=0.271  Sum_probs=207.2

Q ss_pred             eecCCcCeEEEEEecC---CCEEEEEeCCCcEEEEeCCCCc-eEEEeecCCCCEEEEEE------eeCCCCCCccEEEEE
Q psy11350        148 QVGDTRPISYCSFSPD---SQHVATASWSGLCKLWTVPECE-LVQTFRGHDCNVGAIEF------HPLPSEGAVCSLASC  217 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~---~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~~~~~~l~s~  217 (471)
                      ..+|..+|.+++|+|+   +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.|      +|++.     +|+++
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-----~l~~~  135 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-----EIVTG  135 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-----EEEEE
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-----EEEEE
Confidence            3489999999999999   6999999999999999999888 88899999999999966      45666     79999


Q ss_pred             eCCCcEEEEeCCCCc-ceeeecCCC---CcceEEEE----ECCCCCEEEEEeCCCeEEeccccc---cccCCCCcceEEE
Q psy11350        218 AQDGSVKLWSLDKDT-PLANLEGHE---PFRVSRIK----FHPSGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRI  286 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~-~~~~~~~~~---~~~v~~~~----~s~~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l  286 (471)
                      +.||.|++||+.++. .+..+..+.   ...+.++.    |+|++.++++++.|+.+.++....   .........|.++
T Consensus       136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~  215 (357)
T 3i2n_A          136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSL  215 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEE
Confidence            999999999999887 667665443   34788888    789999999999999977754321   1122225689999


Q ss_pred             EECC---CCCEEEEEecCCeEEEEECCCCcEEEEe-----eCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCC---
Q psy11350        287 KFHP---SGRFLGTCCWDHSWRLWDLNQGQEVLHQ-----EGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTG---  354 (471)
Q Consensus       287 ~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~---  354 (471)
                      +|+|   ++.+|++++.||.|++||+++++.+..+     .+|...|++++|+|++. +|++|+.||.|++||++++   
T Consensus       216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            9999   9999999999999999999876654433     48999999999999998 8999999999999999754   


Q ss_pred             ----------------eeEEEecccCcCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCccc
Q psy11350        355 ----------------RCIMFLEGHLKSVFSVDFSPDGYHLA-TGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       355 ----------------~~~~~~~~h~~~v~~~~~sp~~~~l~-s~s~dg~i~iwd~~~~~~  398 (471)
                                      +++..+.+|...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          296 SKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             --CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                            46778889999999999999999998 899999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-33  Score=296.99  Aligned_cols=248  Identities=21%  Similarity=0.296  Sum_probs=220.9

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+.+|..+|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.     +|++++.||.|
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i  121 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-----YVLSGSDDLTV  121 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-----EEEEEETTSEE
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC-----EEEEEcCCCEE
Confidence            4456778999999999999999999999999999999999999999999999999999999998     79999999999


Q ss_pred             EEEeCCCC-cceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECC--CCCE
Q psy11350        224 KLWSLDKD-TPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHP--SGRF  294 (471)
Q Consensus       224 ~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~--~~~~  294 (471)
                      ++||+.++ .....+..|.. .|.+++|+| ++..+++++.|+.+.++..     ...+..+....+.+++|+|  ++.+
T Consensus       122 ~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (814)
T 3mkq_A          122 KLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (814)
T ss_dssp             EEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred             EEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence            99999887 55566666665 899999999 8999999999999777542     3334445456899999999  9999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP  374 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  374 (471)
                      |++++.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+..+..|...+.+++|+|
T Consensus       201 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--EEEEEeCCCcEEEEECCCccc
Q psy11350        375 DGY--HLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       375 ~~~--~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      ++.  +++++ .++.+.+|++.....
T Consensus       281 ~~~~~~~~~~-~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          281 TGRKNYIASG-FDNGFTVLSLGNDEP  305 (814)
T ss_dssp             TCGGGEEEEE-ETTEEEEEECSCCSC
T ss_pred             CCCceEEEEE-eCCCEEEEEcCCCCc
Confidence            987  45554 567788999876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-33  Score=272.91  Aligned_cols=244  Identities=19%  Similarity=0.328  Sum_probs=207.4

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      +|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++  .     +|++++.||.|++||+.
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~-----~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR--H-----VLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET--T-----EEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC--C-----EEEEEcCCCCEEEEecc
Confidence            4899999999999999999999999999999999999999999999999999954  3     79999999999999998


Q ss_pred             -CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCC-EEEEEe--c
Q psy11350        230 -KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGR-FLGTCC--W  300 (471)
Q Consensus       230 -~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~-~l~~~~--~  300 (471)
                       .+..+..+..|.. .|.+++|+|++.++++++.|+.+.++..     ...+..| ...|.+++|+|++. ++++++  .
T Consensus       205 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          205 IANHQIGTLQGHSS-EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             SSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEEEECCTT
T ss_pred             cCcceeeEEcCCCC-CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEEEecCCC
Confidence             4556677777776 8999999999999999999999777543     2234455 56899999999775 555554  7


Q ss_pred             CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEeCCCCeeEE--EecccCcCEEEEEEcCCC
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT--GGLDAFGRVWDLRTGRCIM--FLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t--~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~  376 (471)
                      |+.|++||+.+++.+..+. +...|.+++|+|++.++++  |+.||.|++||+.++....  .+.+|...|.+++|+|++
T Consensus       283 d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (401)
T 4aez_A          283 DKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG  361 (401)
T ss_dssp             TCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred             CCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence            9999999999999888876 6678999999999999999  4489999999999875544  467899999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheec
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      .+|++++.||.|++||+.+++.+....
T Consensus       362 ~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          362 RILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             SEEEEECTTSEEEEEECCC--------
T ss_pred             CEEEEEeCCCcEEEEECCCCccccccc
Confidence            999999999999999999998876543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.8e-34  Score=272.78  Aligned_cols=249  Identities=16%  Similarity=0.227  Sum_probs=211.9

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE--eecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT--FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ....+.+|...|.+++|+|++++|++++.||.|++||+.+++....  +..|...|.+++|+|++.     +|++++.||
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~  118 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-----KFAVGSGSR  118 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-----EEEEEETTS
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC-----EEEEEeCCC
Confidence            4556779999999999999999999999999999999988875544  367899999999999987     799999999


Q ss_pred             cEEEEeCCCCcc---eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----------------------cccc
Q psy11350        222 SVKLWSLDKDTP---LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----------------------LANL  275 (471)
Q Consensus       222 ~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----------------------~~~~  275 (471)
                      .|++||+..+..   ...+.......|.+++|+|+++++++++.|+.+.++..                       ...+
T Consensus       119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            999999988763   33443333448999999999999999999998766542                       2233


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC--
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT--  353 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~--  353 (471)
                      ..| ...|.+++|+|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|++.+|++| .|+.|++|++.+  
T Consensus       199 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~  276 (372)
T 1k8k_C          199 SSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAA  276 (372)
T ss_dssp             CCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTT
T ss_pred             CCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcC
Confidence            344 5689999999999999999999999999999999999999999999999999999988887 899999999987  


Q ss_pred             Cee--------------------------------E------EEe-cccCcCEEEEEEc-CCC---CEEEEEeCCCcEEE
Q psy11350        354 GRC--------------------------------I------MFL-EGHLKSVFSVDFS-PDG---YHLATGSEDNAVKI  390 (471)
Q Consensus       354 ~~~--------------------------------~------~~~-~~h~~~v~~~~~s-p~~---~~l~s~s~dg~i~i  390 (471)
                      ++.                                .      ..+ .+|...|++++|+ ++|   .+|++|+.||.|++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~  356 (372)
T 1k8k_C          277 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI  356 (372)
T ss_dssp             TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEE
T ss_pred             ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEE
Confidence            421                                0      223 4899999999977 566   99999999999999


Q ss_pred             EECCCccch
Q psy11350        391 WDLRKRRLL  399 (471)
Q Consensus       391 wd~~~~~~~  399 (471)
                      ||+++++.+
T Consensus       357 W~~~~~~~~  365 (372)
T 1k8k_C          357 WDVRSLESA  365 (372)
T ss_dssp             EEHHHHHHH
T ss_pred             EEecChhHh
Confidence            999876543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-33  Score=292.50  Aligned_cols=242  Identities=23%  Similarity=0.420  Sum_probs=206.7

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...+.+|...|.+++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++.     +|++|+.|++|+
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~s~D~~i~  497 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-----QIVSASRDRTIK  497 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-----CEEEEETTSCEE
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-----EEEEEeCCCEEE
Confidence            346789999999999999999999999999999999999999999999999999999999998     699999999999


Q ss_pred             EEeCCCCcceeee---cCCCCcceEEEEECCCC--CEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCE
Q psy11350        225 LWSLDKDTPLANL---EGHEPFRVSRIKFHPSG--RFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       225 iwd~~~~~~~~~~---~~~~~~~v~~~~~s~~~--~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      +||+.........   ..|.. .|.+++|+|++  ..+++++.|+.+++|..     ...+.+| ...|++++|+|++++
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH-TGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSE
T ss_pred             EEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCE
Confidence            9998654333222   23433 79999999987  58999999999877643     3345666 568999999999999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC----------
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL----------  364 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~----------  364 (471)
                      |++++.||+|++||+++++.+..+.. ...|.+++|+|++.+|++++ ++.|+|||++++..+..+..+.          
T Consensus       576 l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          576 CASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             EEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred             EEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence            99999999999999999998877764 56799999999998887765 6679999999998887765332          


Q ss_pred             ---------cCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        365 ---------KSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       365 ---------~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                               ..+++++|+|+|++|++|+.||+|+|||+..
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                     1378999999999999999999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-33  Score=267.39  Aligned_cols=252  Identities=19%  Similarity=0.232  Sum_probs=220.6

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC--
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD--  220 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--  220 (471)
                      .....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++.     ++++++.+  
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-----~l~~~~~~~~  138 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-----YFLAILDNVM  138 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS-----EEEEEECCBT
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC-----EEEEecCCcc
Confidence            3455677899999999999999999999999999999999999998887 889999999999998     79999998  


Q ss_pred             ---CcEEEEeCCCCcce-----------eeecCCC-CcceEEEEECCCCCEEEEEeCCCeEEeccc------cccccCCC
Q psy11350        221 ---GSVKLWSLDKDTPL-----------ANLEGHE-PFRVSRIKFHPSGRFLGTCCWDHSWRLDTP------LANLEGHE  279 (471)
Q Consensus       221 ---g~i~iwd~~~~~~~-----------~~~~~~~-~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~------~~~~~~~~  279 (471)
                         |.|.+||+..+...           ..+..+. ...+.+++|+|+++++++++.++.+.++..      ...+..| 
T Consensus       139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  217 (369)
T 3zwl_B          139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-  217 (369)
T ss_dssp             TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-
T ss_pred             CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-
Confidence               99999998766432           2222222 127999999999999999999998766543      2234455 


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC--------------e
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA--------------F  345 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg--------------~  345 (471)
                      ...|.+++|+|++++|++++.||.|++||+++++.+..+. +..++.+++|+|++.++++++.++              .
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  296 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE  296 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence            5689999999999999999999999999999999888877 788999999999999999999988              8


Q ss_pred             EEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        346 GRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       346 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      +++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|+++++.....+
T Consensus       297 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          297 ARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred             eEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence            999999999999999999999999999999999999999999999999987765543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=289.67  Aligned_cols=243  Identities=10%  Similarity=0.029  Sum_probs=200.2

Q ss_pred             eeeecCCcCeEEEEEecC------CCEEEEEeCCCcEEEEeCCCCce-----------EEEeecCCCCEEEEEEeeCCCC
Q psy11350        146 CSQVGDTRPISYCSFSPD------SQHVATASWSGLCKLWTVPECEL-----------VQTFRGHDCNVGAIEFHPLPSE  208 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~------~~~l~tg~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v~~l~~~~~~~~  208 (471)
                      ..+.+|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++..           ...+.+|...|++++|+|.+  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--  278 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--  278 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--
Confidence            346678999999999997      57999999999999999986642           24678899999999999853  


Q ss_pred             CCccEEEEEeCCCcEEEEeCCCCc-ceeeecCCCCcceEEE--EECCCC-CEEEEEeCCCeEEeccccc-----cccCCC
Q psy11350        209 GAVCSLASCAQDGSVKLWSLDKDT-PLANLEGHEPFRVSRI--KFHPSG-RFLGTCCWDHSWRLDTPLA-----NLEGHE  279 (471)
Q Consensus       209 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~--~~s~~~-~~i~~~~~d~~~~~~~~~~-----~~~~~~  279 (471)
                          .|++|+.||+|++||+.++. +...+..|.. .|.++  .|+|++ .+|++++.|+++++|....     .+.+|.
T Consensus       279 ----~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          279 ----TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             ----EEEEEETTSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             ----eEEEEeCCCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence                69999999999999998764 4456777776 89999  578888 8999999999988875422     334443


Q ss_pred             C-cceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----
Q psy11350        280 P-FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-----  353 (471)
Q Consensus       280 ~-~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-----  353 (471)
                      . ..|.+++|+|+++.|++++.|++|++||++++.++..+.+|...|++++|+|+|.+|++|+.||+|++||+..     
T Consensus       354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~  433 (524)
T 2j04_B          354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG  433 (524)
T ss_dssp             SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred             ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc
Confidence            3 2478999999999999999999999999999998888899999999999999999999999999999997531     


Q ss_pred             ---------------------------------------CeeEEEecccCcCEEEEEEcCCC---CEEEEEeCCCcEEEE
Q psy11350        354 ---------------------------------------GRCIMFLEGHLKSVFSVDFSPDG---YHLATGSEDNAVKIW  391 (471)
Q Consensus       354 ---------------------------------------~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg~i~iw  391 (471)
                                                             +.++..+.+|...|.+++|+|++   ..+++|+.||+|+||
T Consensus       434 ~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          434 IKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             C------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             cccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence                                                   11223445688889999999985   499999999999999


Q ss_pred             ECCC
Q psy11350        392 DLRK  395 (471)
Q Consensus       392 d~~~  395 (471)
                      +++-
T Consensus       514 ~l~~  517 (524)
T 2j04_B          514 YLSL  517 (524)
T ss_dssp             ECSC
T ss_pred             Eccc
Confidence            9864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-33  Score=295.36  Aligned_cols=235  Identities=14%  Similarity=0.068  Sum_probs=195.5

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ...||...|++++|+|++++||+|+.||.|+||+..+.+....+ .|..+|.+++|+| +.     +|++++.|++|++|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~-----~L~S~s~D~~v~lW   84 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GI-----YLVVINAKDTVYVL   84 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TT-----EEEEEETTCEEEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CC-----EEEEEECcCeEEEE
Confidence            34699999999999999999999999999999999887766554 4788999999999 65     79999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc----------------ccccCCCCcceEEEEECC
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL----------------ANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~----------------~~~~~~~~~~v~~l~~~~  290 (471)
                      |+.+++++..+..+  ..|++++|+|+++++++|+.|+.+++|...                ..+.+| ...|.+++|+|
T Consensus        85 d~~~~~~~~~~~~~--~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h-~~~V~sl~~sp  161 (902)
T 2oaj_A           85 SLYSQKVLTTVFVP--GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR-LSPIVSIQWNP  161 (902)
T ss_dssp             ETTTCSEEEEEECS--SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC-CCCCCEEEEET
T ss_pred             ECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC-CCCeEEEEEcc
Confidence            99999988888633  389999999999999999999997776432                122344 56899999999


Q ss_pred             C-CCEEEEEecCCeEEEEECCCCcEEEEeeCC------------------CCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        291 S-GRFLGTCCWDHSWRLWDLNQGQEVLHQEGH------------------GKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       291 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      + +..|++|+.||.| +||+++++.+..+..|                  ...|++++|+|+|.+|++|+.||.|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            6 5789999999999 9999999988887765                  577999999999999999999999999999


Q ss_pred             CCCeeEEE--e---cc-------------cCcCEEEEEEc----CCC-CEEEEEeCC-----CcEEEEE
Q psy11350        352 RTGRCIMF--L---EG-------------HLKSVFSVDFS----PDG-YHLATGSED-----NAVKIWD  392 (471)
Q Consensus       352 ~~~~~~~~--~---~~-------------h~~~v~~~~~s----p~~-~~l~s~s~d-----g~i~iwd  392 (471)
                      ++++++..  +   ..             |...|++++|+    |++ .+|++|+.|     +.+.+|+
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence            99987753  2   12             34579999995    443 456666554     2566665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-33  Score=259.74  Aligned_cols=247  Identities=21%  Similarity=0.285  Sum_probs=216.8

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC---ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .....+.+|...|.+++|+|++++|++|+.||.|++|++.+.   +.+..+.+|...|.++.|.  +.     ++++++.
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-----~l~~~~~  122 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-----VVISGSW  122 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT-----EEEEEET
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CC-----EEEEEeC
Confidence            344566789999999999999999999999999999998654   5677888999999999993  33     7999999


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEecc---ccccccCCCCcceEEEEECCCCCEE
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDT---PLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      ||.|++||  .+.....+..+.. .+.++.|+| ++.++++++.|+.+.++.   ....+.......+.+++|+|++. +
T Consensus       123 d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~  198 (313)
T 3odt_A          123 DKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-F  198 (313)
T ss_dssp             TSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred             CCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-E
Confidence            99999999  6777777777766 899999988 999999999999977654   34445554467899999999988 9


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ++++.||.|++||+++++.+..+.+|..+|++++|+|++ .|++++.||.|++||+++++++..+..|...|.+++|+|+
T Consensus       199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred             EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence            999999999999999999999999999999999999999 5889999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      ++ +++++.||.|++||+++++.+...
T Consensus       278 ~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          278 GD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             SC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             CC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            98 667899999999999998876544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-32  Score=282.40  Aligned_cols=251  Identities=21%  Similarity=0.248  Sum_probs=221.8

Q ss_pred             ceeeeeecCCcC-eEEEEEec--CCCEEEEEeCCCcEEEEeCCCC--------ceEEEeecCCCCEEEEEEeeCCCCCCc
Q psy11350        143 SIYCSQVGDTRP-ISYCSFSP--DSQHVATASWSGLCKLWTVPEC--------ELVQTFRGHDCNVGAIEFHPLPSEGAV  211 (471)
Q Consensus       143 ~~~~~~~gh~~~-V~~~~~s~--~~~~l~tg~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~~  211 (471)
                      .....+.+|... |++++|+|  ++++|++|+.||.|++||+.++        +....+..|..+|.+++|+|++.    
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----  129 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR----  129 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS----
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC----
Confidence            455677899999 99999999  9999999999999999999754        67778889999999999999998    


Q ss_pred             cEEEEEeCC----CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccc-----cccccCCCCc
Q psy11350        212 CSLASCAQD----GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTP-----LANLEGHEPF  281 (471)
Q Consensus       212 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~-----~~~~~~~~~~  281 (471)
                       +|++++.+    +.|.+||  .++.+..+..|.. .|.+++|+|++. .+++++.|+.+.++..     ...+..| ..
T Consensus       130 -~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~  204 (615)
T 1pgu_A          130 -RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HK  204 (615)
T ss_dssp             -EEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SC
T ss_pred             -EEEEeccCCCCccEEEEEE--CCCcceeeecCCc-cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CC
Confidence             78998887    6888888  6777888887776 899999999998 8999999999777643     3344555 44


Q ss_pred             ---ceEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEe-e---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        282 ---RVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQEVLHQ-E---GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       282 ---~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                         .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ .   .|..+|.+++|+ ++.+|++++.|+.|++||+++
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence               7999999999 999999999999999999999999888 6   899999999999 999999999999999999999


Q ss_pred             CeeEEEeccc----CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        354 GRCIMFLEGH----LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       354 ~~~~~~~~~h----~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      ++.+..+..+    ...+.++.|+ ++.++++++.||.|++||+.+++++..+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  337 (615)
T 1pgu_A          284 SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISG  337 (615)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred             CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence            9999888876    4678899886 889999999999999999998887766643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-33  Score=271.21  Aligned_cols=242  Identities=18%  Similarity=0.296  Sum_probs=207.5

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .+|...+.+.++++++..+++++.||.|++||+.+++....+.. |...|.+++|+|++.     +|++|+.||.|++||
T Consensus        88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-----~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS-----FLSVGLGNGLVDIYD  162 (401)
T ss_dssp             TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-----EEEEEETTSCEEEEE
T ss_pred             CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-----EEEEECCCCeEEEEE
Confidence            46766544433343446688888899999999999998887775 889999999999988     799999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc------cccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP------LANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      +.+++.+..+..|.. .|.++.|  ++.++++++.|+.+.++..      ...+..| ...|.+++|+|++++|++++.|
T Consensus       163 ~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          163 VESQTKLRTMAGHQA-RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH-SSEVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             TTTCCEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             CcCCeEEEEecCCCC-ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC-CCCeeEEEEcCCCCEEEEEeCC
Confidence            999999999988776 8999999  5689999999999777543      2344555 5689999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCC-CEEEEEe--CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG-SVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~t~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  378 (471)
                      |.|++||+++++.+..+..|...|.+++|+|++ .++++|+  .|+.|++||+.+++++..+. |...|.+++|+|++++
T Consensus       239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~  317 (401)
T 4aez_A          239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKE  317 (401)
T ss_dssp             SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSE
T ss_pred             CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCe
Confidence            999999999999999999999999999999966 5666655  79999999999999998886 6688999999999999


Q ss_pred             EEEEe--CCCcEEEEECCCccchh
Q psy11350        379 LATGS--EDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       379 l~s~s--~dg~i~iwd~~~~~~~~  400 (471)
                      |++++  .||.|++||+.+++...
T Consensus       318 l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          318 IMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             EEEEECTTTCEEEEEEEETTEEEE
T ss_pred             EEEEeecCCCcEEEEecCCcccee
Confidence            99954  89999999998865544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=264.14  Aligned_cols=253  Identities=17%  Similarity=0.241  Sum_probs=207.1

Q ss_pred             cccceeeeeecCCcCeEEEEEecC---CCEEEEEeCCCcEEEEeCCC-CceE-EEeecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPD---SQHVATASWSGLCKLWTVPE-CELV-QTFRGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~---~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      .++.....+.+|...|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++.     +|
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l  101 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-----KV  101 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-----EE
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-----EE
Confidence            344556677899999999999999   69999999999999999987 5555 78889999999999999988     79


Q ss_pred             EEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEE--CCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEE
Q psy11350        215 ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF--HPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIK  287 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~  287 (471)
                      ++++.||.|++||+.+++.+... .|.. .|.++.|  +|++.++++++.|+.+.++..     ...+..+  ..+.++.
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~~~-~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~  177 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQIA-QHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYCAD  177 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE-ECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEEEE
T ss_pred             EEEcCCCcEEEEEcCCCCceeec-cccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceEEE
Confidence            99999999999999988876643 3444 8999999  999999999999999777543     2233333  2466666


Q ss_pred             ECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eCCCCCeEEEEEeCCCCE----EEEEeCCCeEEEEeCCCC---eeEE
Q psy11350        288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQGDGSV----VATGGLDAFGRVWDLRTG---RCIM  358 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~----l~t~~~dg~i~iwd~~~~---~~~~  358 (471)
                      +.  ...+++++.++.+++|+++........  ..+...+.++++.+++..    +++++.||.|++||++..   ..+.
T Consensus       178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  255 (368)
T 3mmy_A          178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF  255 (368)
T ss_dssp             EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred             ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence            65  458889999999999999876544332  234556677777665544    999999999999999987   5677


Q ss_pred             EecccCc------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        359 FLEGHLK------------SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       359 ~~~~h~~------------~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      .+.+|..            .|++++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence            7777776            79999999999999999999999999999988776554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.1e-32  Score=257.43  Aligned_cols=265  Identities=22%  Similarity=0.366  Sum_probs=217.9

Q ss_pred             cchhhhhhHHHHhhccc-cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEe
Q psy11350        125 EATRTARNQELQKHLTS-LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFH  203 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  203 (471)
                      ..++.++.|++...... ......+.+|..+|.+++|+|++++|++|+.||.|++|+............+...+..+.++
T Consensus        58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (340)
T 4aow_A           58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS  137 (340)
T ss_dssp             ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence            34555666655432222 22345678999999999999999999999999999999999999888888999999999999


Q ss_pred             eCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCC--CEEEEEeCCCeEEecc-----cccccc
Q psy11350        204 PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSG--RFLGTCCWDHSWRLDT-----PLANLE  276 (471)
Q Consensus       204 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~i~~~~~d~~~~~~~-----~~~~~~  276 (471)
                      +.+.     +|++++.|+.+++||+................+..++|++++  .++++++.|+.+.++.     ....+.
T Consensus       138 ~~~~-----~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~  212 (340)
T 4aow_A          138 SDNR-----QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI  212 (340)
T ss_dssp             TTSS-----CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ecCc-----cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec
Confidence            9988     699999999999999876655444333333489999998875  4788999999877753     234455


Q ss_pred             CCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                      +| ...|++++|+|++++|++++.||+|++||+++.+.+..+.. ...|.+++|+|++.++ +++.|+.|++||++++..
T Consensus       213 ~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          213 GH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             CC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEE
T ss_pred             CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeE
Confidence            66 56899999999999999999999999999999998888775 4689999999987654 566799999999998877


Q ss_pred             EEEec---------ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        357 IMFLE---------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       357 ~~~~~---------~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +..+.         +|...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            66553         688899999999999999999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.6e-33  Score=273.02  Aligned_cols=238  Identities=15%  Similarity=0.179  Sum_probs=204.3

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ..+....|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++.     +|++++.||.|++||+.+++
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE-----ALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS-----EEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC-----EEEEEeCCCeEEEEeCCCCc
Confidence            4455567899999999999999999999999999988899999999999999988     79999999999999999999


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCC--CC---------------------cceE
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGH--EP---------------------FRVS  284 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~--~~---------------------~~v~  284 (471)
                      .+..+..|.. .|.+++|+|+++++++++.|+.+.+|..     ...+..+  ..                     ..+.
T Consensus       173 ~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~  251 (420)
T 3vl1_A          173 NPRTLIGHRA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN  251 (420)
T ss_dssp             CCEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred             CceEEcCCCC-cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence            9999988876 8999999999999999999998776542     2222221  11                     3455


Q ss_pred             EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-CCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCe-eEEEec
Q psy11350        285 RIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGR-CIMFLE  361 (471)
Q Consensus       285 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~~-~~~~~~  361 (471)
                      +++|+|++++|++++.||.|++||+++++.+..+. .|...|++++|+|++. +|++|+.||.|++||+++++ ++..+.
T Consensus       252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  331 (420)
T 3vl1_A          252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL  331 (420)
T ss_dssp             TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred             ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence            56668999999999999999999999998777764 5889999999999998 99999999999999999875 466776


Q ss_pred             c-cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        362 G-HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       362 ~-h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      + |...|.++.| |++.+|++++.||.|++||+....
T Consensus       332 ~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          332 INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred             ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence            6 6677888855 577899999999999999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-34  Score=278.57  Aligned_cols=282  Identities=11%  Similarity=0.038  Sum_probs=214.7

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----------------------------eEEEee-cCCCCEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE-----------------------------LVQTFR-GHDCNVGA  199 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-----------------------------~~~~~~-~h~~~v~~  199 (471)
                      .-...|.+++|||||+++|+++.|++|+  |...++                             ....+. .|...|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            3457899999999999999999999995  332222                             111222 45788999


Q ss_pred             EEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC----cceEEEEECCCCCEEEEEeCCCeEEeccccc--
Q psy11350        200 IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP----FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA--  273 (471)
Q Consensus       200 l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~--  273 (471)
                      ++|+|++.     .|++++.||.|++||...  ++..+. +..    ..+.+++|||||++|++|+.||.+++|....  
T Consensus        91 vawSPdG~-----~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           91 CKPSPIDD-----WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             EEECSSSS-----CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             EEECCCCC-----EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99999998     699999999999999544  555555 443    2599999999999999999999987765332  


Q ss_pred             ----------cc----cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE---EEEe-eCCCCCeEEEEEeCCCC
Q psy11350        274 ----------NL----EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE---VLHQ-EGHGKPVYCMSFQGDGS  335 (471)
Q Consensus       274 ----------~~----~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~s~d~~  335 (471)
                                .+    .+| ...|.+++|+|+|  +++++.|++|++||+..++.   ...+ .+|...|.+++|+  |+
T Consensus       163 l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          163 ENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             TTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             cccccceeeeeeecccccc-cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence                      22    444 4689999999999  88899999999999988763   3456 4788999999999  68


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCccchheecccCCCcccee
Q psy11350        336 VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF--SPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVT  413 (471)
Q Consensus       336 ~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  413 (471)
                      .|++++ ++.|++||+.+++......+|...|..++|  +|++..|++++.||+ ++|.++.      +. ..+....+.
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~------~~-~spd~~l~a  308 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE------LH-VTADNIIAP  308 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS------EE-EECCCSSHH
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc------EE-ECCCceEEE
Confidence            888887 699999999988874444489999999999  999999999999999 9999882      22 222222222


Q ss_pred             eccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeec
Q psy11350        414 SLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       414 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                      .  .+..+.+|......            +..+.....+..++|||||+.+|+.++
T Consensus       309 ~--~d~~v~lW~~~g~~------------l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          309 Y--LEKKFKKWSTIWNE------------FNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             H--HHHHHHHTTTTTTS------------SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             E--cCCEEEEEECCCCc------------eeeeccceEEEEEEECCCCCEEEEEEe
Confidence            2  25556655432221            112233445788999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.1e-32  Score=267.05  Aligned_cols=232  Identities=22%  Similarity=0.467  Sum_probs=208.2

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ...+|...|.|++|  ++++|++|+.||.|++||+.+++....+.+|...|.+++|  ++.     +|++|+.||+|++|
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-----~l~sg~~dg~i~vw  198 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-----VIITGSSDSTVRVW  198 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-----EEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-----EEEEEcCCCeEEEE
Confidence            34467788998877  7899999999999999999999999999999999999999  444     79999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc--------ccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL--------ANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      |+.+++.+..+..|.. .|.++.|+  +.++++++.|+.+.++...        ..+.+| ...|.+++|  ++++|+++
T Consensus       199 d~~~~~~~~~~~~h~~-~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~  272 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCE-AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DDKYIVSA  272 (435)
T ss_dssp             ESSSCCEEEEECCCCS-CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ETTEEEEE
T ss_pred             ECCCCcEEEEEcCCCC-cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CCCEEEEE
Confidence            9999999999988876 89999997  4599999999997775432        334455 568999999  78899999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCE
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  378 (471)
                      +.||.|++||+++++.+..+.+|...|.++.|+  +.++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR  348 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred             eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence            999999999999999999999999999999994  679999999999999999999999999999999999999  7889


Q ss_pred             EEEEeCCCcEEEEECCCcc
Q psy11350        379 LATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~~~  397 (471)
                      |++|+.||.|++||+.+++
T Consensus       349 l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHT
T ss_pred             EEEEeCCCcEEEEECCCCC
Confidence            9999999999999998766

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.7e-32  Score=263.13  Aligned_cols=241  Identities=21%  Similarity=0.367  Sum_probs=204.5

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      -.++.|+||++ ++||+|. |++|+|||+.+++....+.  +|...|++|+|+|++.     +|++|+.||+|+|||+.+
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-----~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-----YLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-----EEEEEETTSCEEEEETTT
T ss_pred             ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-----EEEEEECCCeEEEEEcCC
Confidence            35678999975 5888887 9999999999999887665  6778899999999998     899999999999999999


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc------cccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP------LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      ++.+..+.+|.. .+.++.+  ++.++++++.|+.+.++..      ...+.+| ...+..+.|+|+++++++++.|+.+
T Consensus       179 ~~~~~~~~~h~~-~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h-~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          179 QKRLRNMTSHSA-RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH-SQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             TEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CcEEEEEeCCCC-ceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEeccc-ccceeeeeecCCCCeeeeeeccccc
Confidence            999999998876 7777766  5789999999999766432      2345566 5689999999999999999999999


Q ss_pred             EEEECCCCc----EEEEeeCCCCCeEEEEEeCCC-CEEEE--EeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC
Q psy11350        305 RLWDLNQGQ----EVLHQEGHGKPVYCMSFQGDG-SVVAT--GGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY  377 (471)
Q Consensus       305 ~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d~-~~l~t--~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  377 (471)
                      ++||..+++    .+.....|...|.+++|+|++ .++++  |+.|++|++||+.+++++..+..| ..+.++.|+|++.
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~  333 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYK  333 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTT
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCC
Confidence            999998765    356677899999999999954 45555  457999999999999999888755 6799999999999


Q ss_pred             EEEEEe--CCCcEEEEECCCccchheeccc
Q psy11350        378 HLATGS--EDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       378 ~l~s~s--~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .+++++  .||.|+|||+.+++++.++..+
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence            988765  7899999999999988877543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-33  Score=272.31  Aligned_cols=242  Identities=12%  Similarity=0.136  Sum_probs=192.4

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE---LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      ....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++   ....+.+|...|.+++|+|++.     +|++++.|
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d  121 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED-----KFAVGSGA  121 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS-----CCEEEESS
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC-----EEEEEecC
Confidence            345567899999999999999999999999999999999877   6777889999999999999988     69999999


Q ss_pred             CcEEEEeCCCCc---ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----------------------ccc
Q psy11350        221 GSVKLWSLDKDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----------------------LAN  274 (471)
Q Consensus       221 g~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----------------------~~~  274 (471)
                      +.|++||+.+++   ....+.......|.+++|+|+++++++++.|+.+.++..                       ...
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (377)
T 3dwl_C          122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE  201 (377)
T ss_dssp             SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred             CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence            999999998887   466777623349999999999999999999998666543                       122


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE----EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE----VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       275 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      + .| ...|.+++|+|++++|++++.||+|++||+.+++.    +..+.+|..+|.+++|+|++++|++|+.++.+ +|+
T Consensus       202 ~-~~-~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          202 Y-PS-GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             C-CC-SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             c-cC-CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence            3 44 56799999999999999999999999999999887    77889999999999999999999998866665 666


Q ss_pred             CCCCe--e-------------------------E---------EEe----------------cccCcCEEEEEEcCC-CC
Q psy11350        351 LRTGR--C-------------------------I---------MFL----------------EGHLKSVFSVDFSPD-GY  377 (471)
Q Consensus       351 ~~~~~--~-------------------------~---------~~~----------------~~h~~~v~~~~~sp~-~~  377 (471)
                      .....  .                         .         ..+                ..|...|+++++.+. +.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~  358 (377)
T 3dwl_C          279 GNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG  358 (377)
T ss_dssp             CCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT
T ss_pred             eCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC
Confidence            54211  0                         0         001                139999999997764 33


Q ss_pred             ---EEEEEeCCCcEEEEEC
Q psy11350        378 ---HLATGSEDNAVKIWDL  393 (471)
Q Consensus       378 ---~l~s~s~dg~i~iwd~  393 (471)
                         .|+|||.||.|++||+
T Consensus       359 ~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          359 NITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEEETTSEEEEECC
T ss_pred             ceEEEEeecCCCcEEEecC
Confidence               6999999999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.4e-33  Score=271.15  Aligned_cols=246  Identities=20%  Similarity=0.379  Sum_probs=212.3

Q ss_pred             eeeecCCcCeEEEEEecC-CCEEEEEeCCCcEEEEeCCC----------CceEEEeecCCCCEEEEEEeeCCCCCCccEE
Q psy11350        146 CSQVGDTRPISYCSFSPD-SQHVATASWSGLCKLWTVPE----------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSL  214 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~-~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  214 (471)
                      ....+|.+.|++++|+|+ +.+||+|+.+|.|++|++.+          ......+.+|...|.+++|+|.+..    +|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----~l  197 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG----YL  197 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT----EE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC----eE
Confidence            456789999999999997 68999999999999999976          6778889999999999999999875    79


Q ss_pred             EEEeCCCcEEEEeCCCCcc-------eeeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccc--------cccccCC
Q psy11350        215 ASCAQDGSVKLWSLDKDTP-------LANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTP--------LANLEGH  278 (471)
Q Consensus       215 ~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~--------~~~~~~~  278 (471)
                      ++|+.||.|++|++.++..       ...+..|.. .|.+++|+| ++.+|++++.|+.+.++..        ...+..|
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            9999999999999987432       344555655 899999999 6789999999999776433        2233445


Q ss_pred             CCcceEEEEECCCCC-EEEEEecCCeEEEEECCC-CcEEEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCC--
Q psy11350        279 EPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQ-GQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRT--  353 (471)
Q Consensus       279 ~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~--  353 (471)
                       ...|++++|+|++. +|++|+.||.|++||+++ .+++..+.+|...|++++|+|++. +|++++.||.|+|||+..  
T Consensus       277 -~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          277 -TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             -SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             -CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence             56899999999887 688999999999999998 567888889999999999999884 799999999999999987  


Q ss_pred             ------------CeeEEEecccCcCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcc
Q psy11350        354 ------------GRCIMFLEGHLKSVFSVDFSPDGY-HLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       354 ------------~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~  397 (471)
                                  ...+..+.+|...|++++|+|++. +|++++.||.|+||++....
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             cccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                        367778889999999999999998 99999999999999997653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.2e-32  Score=267.06  Aligned_cols=250  Identities=18%  Similarity=0.300  Sum_probs=214.6

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEee--CCCCCCccEEEEEeCCC
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP--LPSEGAVCSLASCAQDG  221 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~~~~~l~s~~~dg  221 (471)
                      ....+.+|.++|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++  ++.     ++++|+.||
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-----~l~s~s~d~  227 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-----YIVTGSRDN  227 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE-----EEEEEETTS
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC-----EEEEEcCCC
Confidence            455677999999999999988 999999999999999999999999999999999999996  334     799999999


Q ss_pred             cEEEEeCCCCcce-----------------------eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cc
Q psy11350        222 SVKLWSLDKDTPL-----------------------ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LA  273 (471)
Q Consensus       222 ~i~iwd~~~~~~~-----------------------~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~  273 (471)
                      +|++||+.++...                       ..+.+|.. .+.++  ++++.++++++.|+.+.++..     ..
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            9999999876533                       23444443 55554  688999999999999777542     34


Q ss_pred             cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       274 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      .+.+| ...|.+++|+|++++|++++.||.|++||+++++++..+.+|...|.+++|+  +.+|++|+.||.|++||+.+
T Consensus       305 ~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          305 ILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             EECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            45566 5689999999999999999999999999999999999999999999999997  57999999999999999999


Q ss_pred             CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       354 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      +....... |...+..++|+|++.+|++|+ ||.|++||+++++++..+.....
T Consensus       382 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~  433 (464)
T 3v7d_B          382 YSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA  433 (464)
T ss_dssp             CCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTC
T ss_pred             Cceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCC
Confidence            88776654 667788899999999999998 89999999999998876443333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-32  Score=265.08  Aligned_cols=235  Identities=18%  Similarity=0.187  Sum_probs=198.7

Q ss_pred             ecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEeecC---CCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        149 VGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPECELVQTFRGH---DCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       149 ~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      .+|...|.+++|+| ++.+|++++.||.|++||+.+ ..+..+..|   ...|.+++|+|++.     +|++++.||.|+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~  188 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-----MLATGDSTGRLL  188 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-----EEEEEETTSEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-----EEEEECCCCCEE
Confidence            47999999999999 789999999999999999985 556666544   48899999999988     799999999999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccccc--------cccCCCCcceEEEEECC-CCCE
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPLA--------NLEGHEPFRVSRIKFHP-SGRF  294 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~~--------~~~~~~~~~v~~l~~~~-~~~~  294 (471)
                      +||+ +++.+..+..|.. .|.+++|+|++. ++++++.|+.+.++....        ....| ...|.+++|+| ++++
T Consensus       189 i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~  265 (383)
T 3ei3_B          189 LLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH-EKPVNAAYFNPTDSTK  265 (383)
T ss_dssp             EEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC-SSCEEEEEECTTTSCE
T ss_pred             EEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC-CCceEEEEEcCCCCCE
Confidence            9999 6778888888776 899999999999 999999999977754321        11234 66899999999 9999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCC-----------------CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHG-----------------KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                      |++++.|+.|++||+++++.+..+.+|.                 ..+..++|+|++++  +|+.|+.|++||+.+++++
T Consensus       266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence            9999999999999999887766555442                 34445677777766  7789999999999999999


Q ss_pred             EEecc--cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        358 MFLEG--HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       358 ~~~~~--h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      ..+.+  |...+..++|+|++++|++|+ ||.|++||+++
T Consensus       344 ~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          344 HQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            99987  557788889999999999997 99999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=249.36  Aligned_cols=242  Identities=19%  Similarity=0.311  Sum_probs=205.3

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+.+|...|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...+.++.+.+  .     ++++++.++.+++|
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~--~-----~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--Y-----ILSSGSRSGHIHHH  134 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET--T-----EEEEEETTSEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC--C-----EEEEEecCCceEee
Confidence            3457899999999999999999999999999999999999999999999988776654  3     79999999999999


Q ss_pred             eCCCCc-ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc--------cccCCCCcceEEEEECCCCCEE--
Q psy11350        227 SLDKDT-PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA--------NLEGHEPFRVSRIKFHPSGRFL--  295 (471)
Q Consensus       227 d~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~l--  295 (471)
                      +..... .+..+..|.. .+..+.+++++.++++++.|+.+.++....        .........|.++.++|++..+  
T Consensus       135 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  213 (318)
T ss_dssp             ETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred             ecCCCceeEEEEcCccC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence            987764 4455666665 899999999999999999999977754321        1112224579999999976633  


Q ss_pred             -EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        296 -GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       296 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                       ++++.+++|++||.......... .+...+..+.|+|++..+++++  .|+.|+|||+++++++..+.+|.+.|++++|
T Consensus       214 ~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~  292 (318)
T 4ggc_A          214 TGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM  292 (318)
T ss_dssp             EEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence             46678899999999988766554 4677899999999998877654  7999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +|+|++|+||+.||+|+|||+....
T Consensus       293 spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          293 SPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             cCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999999999999999999997654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.9e-32  Score=251.06  Aligned_cols=202  Identities=21%  Similarity=0.345  Sum_probs=175.3

Q ss_pred             EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC--CcceeeecCCCCcceEEEEECCC--CCEEEEEeCC
Q psy11350        188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK--DTPLANLEGHEPFRVSRIKFHPS--GRFLGTCCWD  263 (471)
Q Consensus       188 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~d  263 (471)
                      ..+.+|...|.+++|+|++.     +|++|+.|++|+|||+..  .+.+..+.+|.. .|.+++|+++  +.+|++++.|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~-----~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGK-----RMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSS-----EEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETT
T ss_pred             eeccCCcCceEEEEECCCCC-----EEEEEeCCCEEEEEecCCCCcEEEEEEccccC-CeEEEEecCCCcCCEEEEEcCC
Confidence            45678999999999999998     799999999999999974  367788888887 8999999874  8999999999


Q ss_pred             CeEEecccc-------ccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEECCCCc--EEEEeeCCCCCeEEEEEeC
Q psy11350        264 HSWRLDTPL-------ANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCMSFQG  332 (471)
Q Consensus       264 ~~~~~~~~~-------~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~  332 (471)
                      +.+++|...       ..+..| ...|.+++|+|+  +.+|++++.|++|++||++++.  ....+.+|...|.+++|+|
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             CEEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            998776432       223445 568999999997  8899999999999999998763  2456788999999999999


Q ss_pred             C-------------CCEEEEEeCCCeEEEEeCCCCe----eEEEecccCcCEEEEEEcCCC---CEEEEEeCCCcEEEEE
Q psy11350        333 D-------------GSVVATGGLDAFGRVWDLRTGR----CIMFLEGHLKSVFSVDFSPDG---YHLATGSEDNAVKIWD  392 (471)
Q Consensus       333 d-------------~~~l~t~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg~i~iwd  392 (471)
                      +             +++|++|+.|+.|++||++++.    ....+.+|...|.+++|+|++   .+|++|+.|++|+|||
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            7             5799999999999999998765    667889999999999999984   8999999999999999


Q ss_pred             CCCc
Q psy11350        393 LRKR  396 (471)
Q Consensus       393 ~~~~  396 (471)
                      +++.
T Consensus       236 ~~~~  239 (297)
T 2pm7_B          236 QDNE  239 (297)
T ss_dssp             ESST
T ss_pred             eCCC
Confidence            8764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=263.82  Aligned_cols=244  Identities=14%  Similarity=0.072  Sum_probs=204.7

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eEEEeec-------------------------------------
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECE---LVQTFRG-------------------------------------  192 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~-------------------------------------  192 (471)
                      .++.+++|+|+|++|++++ ++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            5889999999999777765 8899999999998   6665553                                     


Q ss_pred             -----------------CCCCEEEEEEeeCCCCCCccEE-EEEeCCCcEEEEeCC--CCcceeeecCC-CCcceEEEEEC
Q psy11350        193 -----------------HDCNVGAIEFHPLPSEGAVCSL-ASCAQDGSVKLWSLD--KDTPLANLEGH-EPFRVSRIKFH  251 (471)
Q Consensus       193 -----------------h~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~-~~~~v~~~~~s  251 (471)
                                       |...|.+++|+|++.     +| ++++.||.|++||+.  +++.+..+..+ ....|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-----~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES-----RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSS-----EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCC-----EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                             333799999999998     54 899999999999998  88888877632 23389999999


Q ss_pred             CCCCEEEEEeCCCeEEec---cc------cccccCCCCcceEEEEECCC---CCEEEEEecCCeEEEEECCCCcEEEE-e
Q psy11350        252 PSGRFLGTCCWDHSWRLD---TP------LANLEGHEPFRVSRIKFHPS---GRFLGTCCWDHSWRLWDLNQGQEVLH-Q  318 (471)
Q Consensus       252 ~~~~~i~~~~~d~~~~~~---~~------~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~-~  318 (471)
                      |++++|++++.++.+.++   ..      ...+.+| ...|.+++|+|+   +++|++++.|++|++||+.+++.+.. +
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence            999999999999985543   21      1144555 568999999999   99999999999999999999988877 5


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-------------------------CcCEEEEEEc
Q psy11350        319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-------------------------LKSVFSVDFS  373 (471)
Q Consensus       319 ~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-------------------------~~~v~~~~~s  373 (471)
                      .+|...|.+++|+ ++.+|++|+.|+.|++||+++++++..+..+                         ...|.+++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            6899999999999 9999999999999999999999988877632                         3569999999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEC--CCc---cchheecc
Q psy11350        374 PDGYHLATGS-EDNAVKIWDL--RKR---RLLKWCTQ  404 (471)
Q Consensus       374 p~~~~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~  404 (471)
                      |++++|++++ .|+.|++|++  ..+   +.+..+..
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~  353 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF  353 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence            9999999999 8999999999  555   45555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=249.35  Aligned_cols=238  Identities=20%  Similarity=0.345  Sum_probs=197.8

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      .+++|+||+++ +||+|. |++|+|||+.+++++..+.  +|...|++++|+|++.     +|++|+.||+|++||+.++
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-----~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-----YLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-----EEEEEETTSEEEEEETTTT
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-----EEEEEECCCcEEEeecCCc
Confidence            35779999986 788776 9999999999999888775  6778899999999998     7999999999999999999


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc------ccccccCCCCcceEEEEECCCCCEEEEEecCCeEE
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT------PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR  305 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  305 (471)
                      +++..+.+|.. .+.+  +++++..+++++.++.+.++.      ....+.+| ...+..+.+++++++|++++.||+|+
T Consensus       100 ~~~~~~~~h~~-~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~  175 (318)
T 4ggc_A          100 KRLRNMTSHSA-RVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH-SQEVCGLRWAPDGRHLASGGNDNLVN  175 (318)
T ss_dssp             EEEEEEECCSS-CEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeEEEecCccc-eEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEcCc-cCceEEEEEcCCCCEEEEEecCccee
Confidence            99999988875 4544  556678999999999866532      22344555 55799999999999999999999999


Q ss_pred             EEECCCCcE----EEEeeCCCCCeEEEEEeCCCC-E--EEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCE
Q psy11350        306 LWDLNQGQE----VLHQEGHGKPVYCMSFQGDGS-V--VATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       306 iwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~-~--l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  378 (471)
                      +||+++++.    ......|...|.+++++|++. .  +++++.++.|++||........... +...+..+.|+|++..
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  254 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE  254 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence            999987653    345667889999999999665 3  3466788999999999888776554 6788999999999998


Q ss_pred             EEEEe--CCCcEEEEECCCccchheec
Q psy11350        379 LATGS--EDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       379 l~s~s--~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +++++  .|+.|++||+++++++.++.
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~  281 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTMAKVAELK  281 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEEc
Confidence            87765  79999999999998887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-32  Score=287.20  Aligned_cols=254  Identities=12%  Similarity=0.077  Sum_probs=194.0

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE--ee---c-------------CCCCEEEEEEeeCCCCCC-
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT--FR---G-------------HDCNVGAIEFHPLPSEGA-  210 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~---~-------------h~~~v~~l~~~~~~~~~~-  210 (471)
                      +|...|++++|+|+|++||+|+.||.|++||+.+++++..  +.   .             |..+|.+++|++...... 
T Consensus       209 ~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~  288 (902)
T 2oaj_A          209 KRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT  288 (902)
T ss_dssp             CBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence            4578899999999999999999999999999999887653  21   2             345799999965311000 


Q ss_pred             ---------------------------------------------------------------------------ccEEE
Q psy11350        211 ---------------------------------------------------------------------------VCSLA  215 (471)
Q Consensus       211 ---------------------------------------------------------------------------~~~l~  215 (471)
                                                                                                 ...++
T Consensus       289 ~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~  368 (902)
T 2oaj_A          289 SLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLIL  368 (902)
T ss_dssp             EEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEE
T ss_pred             EEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEE
Confidence                                                                                       00234


Q ss_pred             EEeCCCcEEEEeCCCCcceee-------ecCCCC---------------------------------cceEEEEECCCCC
Q psy11350        216 SCAQDGSVKLWSLDKDTPLAN-------LEGHEP---------------------------------FRVSRIKFHPSGR  255 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~-------~~~~~~---------------------------------~~v~~~~~s~~~~  255 (471)
                      +++.||.|++||+.++.....       +..+..                                 ..+.+++|+|+++
T Consensus       369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~  448 (902)
T 2oaj_A          369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT  448 (902)
T ss_dssp             EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE
T ss_pred             EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc
Confidence            455567777777765532211       111211                                 1233455678999


Q ss_pred             EEEEEeCCCeEEecccccc-c---------------cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc------
Q psy11350        256 FLGTCCWDHSWRLDTPLAN-L---------------EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ------  313 (471)
Q Consensus       256 ~i~~~~~d~~~~~~~~~~~-~---------------~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~------  313 (471)
                      ++++|+.|+++++|..... +               .+| ...|.+++|+|++++||+|+.||+|+|||+.+++      
T Consensus       449 ~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~  527 (902)
T 2oaj_A          449 AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN  527 (902)
T ss_dssp             EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred             EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence            9999999999888653221 1               034 5579999999999999999999999999997652      


Q ss_pred             ---------------------------------------EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy11350        314 ---------------------------------------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG  354 (471)
Q Consensus       314 ---------------------------------------~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~  354 (471)
                                                             ++..+.+|.+.|++++|+||| +||+|+.|++|+|||++++
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred             cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence                                                   366778899999999999999 9999999999999999888


Q ss_pred             eeEE-----Eec-ccCcCEEEEEEc-----CCC---CEEEEEeCCCcEEEEEC---CCccchheeccc
Q psy11350        355 RCIM-----FLE-GHLKSVFSVDFS-----PDG---YHLATGSEDNAVKIWDL---RKRRLLKWCTQL  405 (471)
Q Consensus       355 ~~~~-----~~~-~h~~~v~~~~~s-----p~~---~~l~s~s~dg~i~iwd~---~~~~~~~~~~~~  405 (471)
                      ..+.     .+. +|...|++++|+     |||   .+|++|+.|++|++||+   .+|+.+..+..+
T Consensus       607 ~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~  674 (902)
T 2oaj_A          607 AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI  674 (902)
T ss_dssp             EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred             eEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence            7654     233 899999999999     885   89999999999999999   777776666544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-32  Score=266.83  Aligned_cols=247  Identities=22%  Similarity=0.357  Sum_probs=209.4

Q ss_pred             eeeeecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-------ceEEEeecCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        145 YCSQVGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPEC-------ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      ...+.+|..+|++++|+| ++++|++|+.||.|+|||+.++       +.+..+.+|...|.+++|+|++..    +|++
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s  149 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN----VLLS  149 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT----EEEE
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC----EEEE
Confidence            445679999999999999 9999999999999999999987       678889999999999999999843    8999


Q ss_pred             EeCCCcEEEEeCCCCcceeee--cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccc-cCCCCcceEEEEE
Q psy11350        217 CAQDGSVKLWSLDKDTPLANL--EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANL-EGHEPFRVSRIKF  288 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~-~~~~~~~v~~l~~  288 (471)
                      ++.||.|++||+.+++.+..+  ..|.. .|.+++|+|++.+|++++.|+.+.++..     ...+ ..|....+.++.|
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             EcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence            999999999999999999888  55655 8999999999999999999999777543     2334 4564545899999


Q ss_pred             CCCCCEEEEE---ecCCeEEEEECCCCcE-EEEe-eCCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCee-EEEec
Q psy11350        289 HPSGRFLGTC---CWDHSWRLWDLNQGQE-VLHQ-EGHGKPVYCMSFQGDGSVVAT-GGLDAFGRVWDLRTGRC-IMFLE  361 (471)
Q Consensus       289 ~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~s~d~~~l~t-~~~dg~i~iwd~~~~~~-~~~~~  361 (471)
                      +|++.+|++|   +.|+.|++||+++++. +... ..|...+.+++|+|++++|++ |+.||.|++||+.++++ +..+.
T Consensus       229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~  308 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS  308 (402)
T ss_dssp             CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred             cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence            9999999999   7899999999998754 3332 357788999999999998865 55799999999998874 44444


Q ss_pred             c--cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        362 G--HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       362 ~--h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      .  |...|.+++|+|++.++++  .++.+++|++.++++
T Consensus       309 ~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          309 MFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            3  5589999999999988775  567999999988754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-30  Score=255.71  Aligned_cols=242  Identities=25%  Similarity=0.508  Sum_probs=216.5

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .....+.+|..+|.+++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.++.|++  .     .+++|+.||+
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-----~l~s~s~dg~  220 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--K-----RVVSGSRDAT  220 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--T-----EEEEEETTSE
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC--C-----EEEEEeCCCE
Confidence            3445677999999999998  57999999999999999999999999999999999999964  3     6999999999


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEE
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      |++||+.+++.+..+..|.. .+.++.|  ++.++++++.|+.+.++..     ...+.+| ...|.++.|  ++.++++
T Consensus       221 i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~  294 (445)
T 2ovr_B          221 LRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGIHVVS  294 (445)
T ss_dssp             EEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CSSEEEE
T ss_pred             EEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CCCEEEE
Confidence            99999999999999988876 8999999  7899999999999777542     3445556 557999999  7899999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc---cCcCEEEEEEcC
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG---HLKSVFSVDFSP  374 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~sp  374 (471)
                      ++.||.|++||+++++.+..+.+|...+.++.++  +.+|++|+.||.|++||+++++++..+.+   |...|++++|+ 
T Consensus       295 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-  371 (445)
T 2ovr_B          295 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-  371 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-
T ss_pred             EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-
Confidence            9999999999999999999999999999988875  66999999999999999999999999886   88899999995 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                       +.+|++|+.||.|++||+.+++.+..+.
T Consensus       372 -~~~l~s~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          372 -KNFVITSSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             -SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             -CCEEEEEeCCCeEEEEECCCCceeeeee
Confidence             6899999999999999999999888773

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-31  Score=255.68  Aligned_cols=235  Identities=12%  Similarity=0.130  Sum_probs=185.1

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+|..+|++++|+|||++|++|+.+| ++||++.+++.......  ..+..+++.+.++.    ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNY----VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSE----EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCE----EEEEECCccEEEEEE
Confidence            357999999999999999999998665 78999988776655443  24778888887762    346788889999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---cccCCCCcceEEEEECCCCCEEEE--EecCC
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRIKFHPSGRFLGT--CCWDH  302 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg  302 (471)
                      +.+++++..+..+.  .|.++.++++.  ++++ .++.+.++....   .+... ..+...+++++  .++++  |+.||
T Consensus        88 ~~~~~~~~~~~~~~--~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~-~~~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           88 DVKKQDVSRIKVDA--PVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDD-IRFGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTTTEEEEEEECSS--CEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCC-EEEEEEEEEET--TEEEEEESSCTT
T ss_pred             CCCCcEEEEEECCC--ceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEe-ccCCceEEEEc--cEEEEeCCCcCc
Confidence            99999988887443  79999999875  3333 356655543221   11111 11445566777  66666  58899


Q ss_pred             eEEEEECCCCc---------------E-EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEeCCCCeeEEEec-c-c
Q psy11350        303 SWRLWDLNQGQ---------------E-VLHQEGHGKPVYCMSFQGDGSVVATGGLDAF-GRVWDLRTGRCIMFLE-G-H  363 (471)
Q Consensus       303 ~i~iwd~~~~~---------------~-~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~-i~iwd~~~~~~~~~~~-~-h  363 (471)
                      .|++||+.+++               + +..+.+|..+|++++|+|+|++|++|+.|++ |+|||+++++++..+. + |
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999999865               2 6788999999999999999999999999998 9999999999999998 5 9


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      ...|.+++|+|+|++|++++.|++|++||++.+.
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999999999999999999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5e-32  Score=266.41  Aligned_cols=247  Identities=19%  Similarity=0.220  Sum_probs=195.3

Q ss_pred             eeeeeecCCcCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEeec--CCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        144 IYCSQVGDTRPISYCSFSP-DSQHVATASWSGLCKLWTVPECELVQTFRG--HDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      ....+.||.++|++++|+| ++.+|++|+.||+|++||+.++........  +...+.+++|+|++.     +|++|+.|
T Consensus       156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~g~~d  230 (435)
T 4e54_B          156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR-----MVVTGDNV  230 (435)
T ss_dssp             EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT-----EEEEECSS
T ss_pred             eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC-----EEEEEeCC
Confidence            3445679999999999998 689999999999999999986544333332  344678999999998     89999999


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEecccc--------ccccCCCCcceEEEEECCC
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPL--------ANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~--------~~~~~~~~~~v~~l~~~~~  291 (471)
                      |.|++||+. ++.+..+..|.. .|.+++|+|++. ++++++.|+.+.+|...        ....+| ...|++++|+|+
T Consensus       231 g~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~spd  307 (435)
T 4e54_B          231 GNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH-RHPVNAACFSPD  307 (435)
T ss_dssp             SBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC-SSCEEECCBCTT
T ss_pred             CcEeeeccC-cceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec-cccccceeECCC
Confidence            999999985 566777777776 899999999987 67789999986664321        112334 568999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEEeeCCCC------CeEEEEEeCCCCEEEEEe------------CCCeEEEEeCCC
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK------PVYCMSFQGDGSVVATGG------------LDAFGRVWDLRT  353 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~d~~~l~t~~------------~dg~i~iwd~~~  353 (471)
                      +++|++++.||+|++||+.++.....+..|..      .+....|+|++.++++++            .++.|++||..+
T Consensus       308 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          308 GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            99999999999999999999988777766543      233456777777766654            235799999999


Q ss_pred             CeeEEEec-ccCcCEEEE-EEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        354 GRCIMFLE-GHLKSVFSV-DFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       354 ~~~~~~~~-~h~~~v~~~-~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      ++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+|||++.+++.
T Consensus       388 g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          388 GKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            99888765 688888887 6999999999876 889999999998764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.4e-31  Score=261.54  Aligned_cols=241  Identities=24%  Similarity=0.467  Sum_probs=205.2

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .....+.+|..+|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++.       .+++|+.||.
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-------~l~s~s~dg~  234 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-------MMVTCSKDRS  234 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-------EEEEEETTSC
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-------EEEEeeCCCc
Confidence            345567799999999998  7899999999999999999999999999999999999999742       6999999999


Q ss_pred             EEEEeCCCCcce---eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc-----ccccccCCCCcceEEEEECCCCCE
Q psy11350        223 VKLWSLDKDTPL---ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT-----PLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       223 i~iwd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      |++||+.++...   ..+.+|.. .|.++.|  +++++++++.|+.+.++.     ....+.+| ...|.++.|  ++++
T Consensus       235 i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~  308 (435)
T 1p22_A          235 IAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQY--RDRL  308 (435)
T ss_dssp             EEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEE--ETTE
T ss_pred             EEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEe--CCCE
Confidence            999999888765   45566665 8999999  889999999999977754     23445566 557999999  4689


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe---------eEEEecccCc
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR---------CIMFLEGHLK  365 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~h~~  365 (471)
                      +++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|+.||.|++||+.++.         ++..+.+|.+
T Consensus       309 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~  386 (435)
T 1p22_A          309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG  386 (435)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC
Confidence            999999999999999999999999999999999999  78899999999999999997765         7889999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      .|.+++|  ++.+|++|+.||+|++||+.+.......
T Consensus       387 ~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  421 (435)
T 1p22_A          387 RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE  421 (435)
T ss_dssp             CCCCEEE--CSSCEEECCSSSEEEEEC----------
T ss_pred             CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC
Confidence            9999999  7889999999999999999887665543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-31  Score=259.91  Aligned_cols=276  Identities=21%  Similarity=0.297  Sum_probs=203.6

Q ss_pred             CeEEEEEecCCCEEE-EEeCCCcEEEEeCCCC----ceEEEeecCCCCEEEEEEee-CCCCCCccEEEEEeCCCcEEEEe
Q psy11350        154 PISYCSFSPDSQHVA-TASWSGLCKLWTVPEC----ELVQTFRGHDCNVGAIEFHP-LPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ....++++|+...++ +++.+|.|+||++.+.    ..+..+.+|...|.+++|+| ++.     +|++|+.||+|++||
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-----~l~s~s~dg~v~vw~  110 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN-----VIASGSEDCTVMVWE  110 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT-----EEEEEETTSEEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC-----EEEEEeCCCeEEEEE
Confidence            344678888765444 5788999999998654    23456779999999999999 666     899999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC-CEEEEEecCCeEEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRL  306 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~i  306 (471)
                      +.++.......                               .+...+.+| ...|.+++|+|++ ++|++++.||.|++
T Consensus       111 ~~~~~~~~~~~-------------------------------~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A          111 IPDGGLVLPLR-------------------------------EPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             CCTTCCSSCBC-------------------------------SCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             ccCCCCccccC-------------------------------CceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence            98874321110                               112223333 3479999999998 69999999999999


Q ss_pred             EECCCCcEEEEe--eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe-cccCcC-EEEEEEcCCCCEEEEE
Q psy11350        307 WDLNQGQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL-EGHLKS-VFSVDFSPDGYHLATG  382 (471)
Q Consensus       307 wd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~h~~~-v~~~~~sp~~~~l~s~  382 (471)
                      ||+++++.+..+  .+|...|++++|+|++.+|++++.||.|++||+++++.+..+ .+|.+. +.++.|+|++.+|++|
T Consensus       159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             EETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred             EECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence            999999999998  789999999999999999999999999999999999999988 788776 8999999999999999


Q ss_pred             ---eCCCcEEEEECCCccc-hheecccCCCccceeeccccceeeeecccCCCcccccchhhhc----ccccceeeecccc
Q psy11350        383 ---SEDNAVKIWDLRKRRL-LKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKE----QVEPIPLLLDIQK  454 (471)
Q Consensus       383 ---s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  454 (471)
                         +.|+.|++||+++++. +..........+..+.+..+....++.....+...++......    .+........+..
T Consensus       239 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~  318 (402)
T 2aq5_A          239 FSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRG  318 (402)
T ss_dssp             ECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSE
T ss_pred             ccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccc
Confidence               7999999999998765 3333222233333333333433333222222222222222111    1122222356889


Q ss_pred             eeeeecCCeEEE
Q psy11350        455 LTFKFDSDLHAM  466 (471)
Q Consensus       455 l~fs~dg~~lA~  466 (471)
                      ++|+|++.+++.
T Consensus       319 ~~~sp~~~~~~s  330 (402)
T 2aq5_A          319 MGYMPKRGLEVN  330 (402)
T ss_dssp             EEECCGGGSCGG
T ss_pred             eEEeccccccee
Confidence            999999988764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-30  Score=247.61  Aligned_cols=233  Identities=13%  Similarity=0.122  Sum_probs=203.8

Q ss_pred             eeecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeC-CCCceEEEeec--CCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        147 SQVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTV-PECELVQTFRG--HDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ...+|..+|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| +.     +|++++.|+.
T Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-----~l~s~~~d~~  123 (342)
T 1yfq_A           51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD-----KLIAASWDGL  123 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-----EEEEEETTSE
T ss_pred             eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC-----EEEEEcCCCe
Confidence            4458999999999999999 9999999999999999 77755 67788  999999999999 66     7999999999


Q ss_pred             EEEEeCCC---------CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-------cccCCCCcceEEE
Q psy11350        223 VKLWSLDK---------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-------NLEGHEPFRVSRI  286 (471)
Q Consensus       223 i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-------~~~~~~~~~v~~l  286 (471)
                      |++||+.+         ++++..+. +. ..+.+++|+|++  +++++.++.+.++....       .........+.++
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          124 IEVIDPRNYGDGVIAVKNLNSNNTK-VK-NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSS-SC-CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             EEEEcccccccccccccCCeeeEEe-eC-CceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence            99999987         77777666 33 389999999988  99999999977654332       1223336689999


Q ss_pred             EECC-CCCEEEEEecCCeEEEEECCCC------cEEEEeeCCCC---------CeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        287 KFHP-SGRFLGTCCWDHSWRLWDLNQG------QEVLHQEGHGK---------PVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       287 ~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~---------~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      +|+| ++++|++++.||.|++|+++..      +....+..|..         .|.+++|+|++++|++++.||.|++||
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            9999 9999999999999999999887      77778887765         999999999999999999999999999


Q ss_pred             CCCCeeEEEeccc-CcCEEEEEEcCCCCEEEEEeCCCc-EEEEE
Q psy11350        351 LRTGRCIMFLEGH-LKSVFSVDFSPDGYHLATGSEDNA-VKIWD  392 (471)
Q Consensus       351 ~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~dg~-i~iwd  392 (471)
                      +.+++++..+.+| ...|.+++  |++.+|++|+.||+ .+.|.
T Consensus       280 ~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          280 LQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            9999999999998 99999999  99999999999998 55554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=263.78  Aligned_cols=260  Identities=10%  Similarity=0.033  Sum_probs=205.1

Q ss_pred             chhhhhhHHHHhhcccccee-eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceEEEeec---------
Q psy11350        126 ATRTARNQELQKHLTSLSIY-CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP---ECELVQTFRG---------  192 (471)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~---~~~~~~~~~~---------  192 (471)
                      .++.++.|++.......... ....+|..+|++++|+|++++|++|+.||.|++||+.   +++....+.+         
T Consensus        84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~  163 (437)
T 3gre_A           84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK  163 (437)
T ss_dssp             TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred             CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence            44555666654421111111 1222699999999999999999999999999999994   5555544432         


Q ss_pred             ---CCCCEEEEE--EeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecC--CCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        193 ---HDCNVGAIE--FHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG--HEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       193 ---h~~~v~~l~--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                         +...+.++.  +++++.     +|++++.||.|++||+.+++++..+..  |.. .|.+++|+|++.++++++.|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~  237 (437)
T 3gre_A          164 NFGKNEYAVRMRAFVNEEKS-----LLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGI  237 (437)
T ss_dssp             GGSSCCCEEEEEEEECSSCE-----EEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSC
T ss_pred             CcccccCceEEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCe
Confidence               455666666  335565     799999999999999999999999887  444 8999999999999999999999


Q ss_pred             EEeccc-----cccccCCCCcceEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEeeC----------------
Q psy11350        266 WRLDTP-----LANLEGHEPFRVSRIKFHP----SGRFLGTCCWDHSWRLWDLNQGQEVLHQEG----------------  320 (471)
Q Consensus       266 ~~~~~~-----~~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------  320 (471)
                      +.+|..     ...+...+...|.+++|+|    ++.+|++++.||.|++||+++++.+..+.+                
T Consensus       238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (437)
T 3gre_A          238 IDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG  317 (437)
T ss_dssp             EEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred             EEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence            777543     2333322245799996654    677999999999999999999988877764                


Q ss_pred             ----------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc----------------------------
Q psy11350        321 ----------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG----------------------------  362 (471)
Q Consensus       321 ----------~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----------------------------  362 (471)
                                |...|++++|+ ++.+|++|+.|+.|++||+.+++++..+.+                            
T Consensus       318 l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (437)
T 3gre_A          318 LEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS  396 (437)
T ss_dssp             GGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---
T ss_pred             cccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccc
Confidence                      44568889999 778999999999999999999887776665                            


Q ss_pred             ---------cCcCEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q psy11350        363 ---------HLKSVFSVDFSPD--GYHLATGSEDNAVKIWD  392 (471)
Q Consensus       363 ---------h~~~v~~~~~sp~--~~~l~s~s~dg~i~iwd  392 (471)
                               |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                     8899999999998  78999999999999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.6e-31  Score=256.48  Aligned_cols=281  Identities=16%  Similarity=0.191  Sum_probs=220.8

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEee-CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec-------------
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHP-LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE-------------  238 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------  238 (471)
                      ++.+++|++..++....+.+|.+.|++++|+| ++.     +|++|+.||.|++||+.++.....+.             
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   96 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGR-----YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD   96 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCC-----EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCC-----EEEEEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence            45677888888888888999999999999999 877     89999999999999999887665543             


Q ss_pred             CCCCcceEEEEECC-CCCEEEEEeCCCeEEeccccc---cccCCCCcceEEEEECCC---CCEEEEEecCCeEEEEECCC
Q psy11350        239 GHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRIKFHPS---GRFLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       239 ~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~  311 (471)
                      .|. ..|.+++|+| ++.++++++.|+.+.++....   .........+.++.|+|.   +.++++++.+|.|++||+++
T Consensus        97 ~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHR-YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCS-SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCC-CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            244 4899999999 788999999999977754321   111112456899999984   44999999999999999999


Q ss_pred             CcEEEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCe-eEEEe---------------cccCcCEEEEEEcC
Q psy11350        312 GQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGR-CIMFL---------------EGHLKSVFSVDFSP  374 (471)
Q Consensus       312 ~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~~-~~~~~---------------~~h~~~v~~~~~sp  374 (471)
                      ++.+..+.+|...|.+++|+|++. +|++|+.||.|++||++++. ++..+               .+|...|.+++|+|
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            999999999999999999999988 68999999999999998775 44444               57889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchheecccC--------------CCccceeeccccceeeeecccCCCcccccchhhh
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL--------------PNSIGVTSLLTDLYIDVLESLNPGIGNIISSALK  440 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  440 (471)
                      ++++|++++.||.|++||+.+++.+..+....              .....++....+..+.+|+.......        
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------  327 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--------  327 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--------
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--------
Confidence            99999999999999999999988765433211              11223334445566666665443322        


Q ss_pred             cccccce-eeecccceeeeecCCeEEEeecC
Q psy11350        441 EQVEPIP-LLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       441 ~~~~~~~-~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                         ..+. ....+..++|+|+|++||+++.+
T Consensus       328 ---~~~~~~~~~v~~~~~s~~~~~l~s~~~d  355 (408)
T 4a11_B          328 ---TMLKGHYKTVDCCVFQSNFQELYSGSRD  355 (408)
T ss_dssp             ---EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ---eeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence               1222 22357789999999999998865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.7e-31  Score=254.06  Aligned_cols=229  Identities=13%  Similarity=0.067  Sum_probs=186.0

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC---------
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD---------  229 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---------  229 (471)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|.        +++++.|++|++|+..         
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--------~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--------IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--------EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--------eEEecCCCeEEEEEccCceEEeecC
Confidence            445688999999999999999999999888876  456777778775        8999999999999665         


Q ss_pred             CCcceeeecCCCCcceEEEEECC--CCCEEEEEeCCCeEEecccc-----ccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHSWRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      +++.+..+.......|.+++|+|  +++++++++.|+.+.++...     .....+....+.+++|+|++.+|++|+.||
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            45545555533334899999999  99999999999997775432     222344455799999999999999999999


Q ss_pred             eEEEEECCCCcEE-EEeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc---cCcCEE--EEEEcCC
Q psy11350        303 SWRLWDLNQGQEV-LHQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG---HLKSVF--SVDFSPD  375 (471)
Q Consensus       303 ~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~~~~sp~  375 (471)
                      .|++||+++++.+ ..+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+..   |...+.  +++|+|+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999999999887 77887 999999999999999999999 55999999999877655543   434444  6999999


Q ss_pred             CCEEEEEeC-CCcEEEEECCCccc
Q psy11350        376 GYHLATGSE-DNAVKIWDLRKRRL  398 (471)
Q Consensus       376 ~~~l~s~s~-dg~i~iwd~~~~~~  398 (471)
                      |++|++++. |+.|++|++.+...
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCEEEEecCCCCcEEEEEEccccc
Confidence            999999998 99999999976543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.7e-31  Score=249.76  Aligned_cols=201  Identities=22%  Similarity=0.324  Sum_probs=168.5

Q ss_pred             EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc--ceeeecCCCCcceEEEEECC--CCCEEEEEeCCC
Q psy11350        189 TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT--PLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDH  264 (471)
Q Consensus       189 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~  264 (471)
                      .+.+|...|++++|+|++.     +|++|+.|++|+|||+.++.  .+..+.+|.. .|.+++|++  ++.+|++++.|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~-----~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGT-----RLATCSSDRSVKIFDVRNGGQILIADLRGHEG-PVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             ------CCEEEEEECGGGC-----EEEEEETTTEEEEEEEETTEEEEEEEEECCSS-CEEEEEECCGGGSSCEEEEETTS
T ss_pred             ecccccCeEEEeeEcCCCC-----EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-cEEEEEeCCCCCCCEEEEEECCC
Confidence            4568999999999999998     79999999999999998764  4567888876 899999986  489999999999


Q ss_pred             eEEecccc-------ccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEECCCCcE---EEEeeCCCCCeEEEEEeC
Q psy11350        265 SWRLDTPL-------ANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWDLNQGQE---VLHQEGHGKPVYCMSFQG  332 (471)
Q Consensus       265 ~~~~~~~~-------~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~  332 (471)
                      .+++|...       ..+.+| ...|.+++|+|+  +.+|++++.|++|++||++.+..   ...+.+|...|.+++|+|
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             EEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            98876542       233455 568999999997  78999999999999999987632   344568999999999999


Q ss_pred             C-----------------CCEEEEEeCCCeEEEEeCCCC---eeEEEecccCcCEEEEEEcCCC----CEEEEEeCCCcE
Q psy11350        333 D-----------------GSVVATGGLDAFGRVWDLRTG---RCIMFLEGHLKSVFSVDFSPDG----YHLATGSEDNAV  388 (471)
Q Consensus       333 d-----------------~~~l~t~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~~----~~l~s~s~dg~i  388 (471)
                      +                 +.+|++|+.|+.|++||++.+   +++..+.+|...|.+++|+|++    .+|++|+.||+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence            7                 478999999999999999765   4677889999999999999986    899999999999


Q ss_pred             EEEECCCc
Q psy11350        389 KIWDLRKR  396 (471)
Q Consensus       389 ~iwd~~~~  396 (471)
                      ++||+.+.
T Consensus       241 ~iw~~~~~  248 (316)
T 3bg1_A          241 FIWTCDDA  248 (316)
T ss_dssp             EEEECSST
T ss_pred             EEEEccCc
Confidence            99999763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.5e-30  Score=247.65  Aligned_cols=207  Identities=22%  Similarity=0.369  Sum_probs=178.4

Q ss_pred             CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC--CCcceeeecCCCCcceEEEEECCC--CCEEEE
Q psy11350        184 CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD--KDTPLANLEGHEPFRVSRIKFHPS--GRFLGT  259 (471)
Q Consensus       184 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s~~--~~~i~~  259 (471)
                      |+++..+.+|...|++++|+|++.     +|++|+.||.|++||+.  ++..+..+..|.. .|.+++|+++  +.++++
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGK-----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSS-----EEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEE
T ss_pred             CCccEEecCCcccEEEEEEcCCCC-----EEEEEECCCcEEEEecCCCcceeeeEecCCCC-cEEEEEeCCCCCCCEEEE
Confidence            356677889999999999999998     79999999999999997  5566777887776 8999999988  999999


Q ss_pred             EeCCCeEEeccc-------cccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEECCCCc--EEEEeeCCCCCeEEE
Q psy11350        260 CCWDHSWRLDTP-------LANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCM  328 (471)
Q Consensus       260 ~~~d~~~~~~~~-------~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~  328 (471)
                      ++.|+.+.+|..       ...+..| ...|.+++|+|+  +.+|++++.||.|++||++++.  ....+.+|...|.++
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~  153 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA  153 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred             eccCCEEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence            999999766532       2334445 568999999999  9999999999999999998873  455677899999999


Q ss_pred             EEeC-------------CCCEEEEEeCCCeEEEEeCCCCe----eEEEecccCcCEEEEEEcCC---CCEEEEEeCCCcE
Q psy11350        329 SFQG-------------DGSVVATGGLDAFGRVWDLRTGR----CIMFLEGHLKSVFSVDFSPD---GYHLATGSEDNAV  388 (471)
Q Consensus       329 ~~s~-------------d~~~l~t~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~---~~~l~s~s~dg~i  388 (471)
                      +|+|             ++.+|++|+.||.|++||++++.    .+..+.+|...|.+++|+|+   +.+|++++.||.|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence            9999             69999999999999999998764    55678889999999999999   8999999999999


Q ss_pred             EEEECCCcc
Q psy11350        389 KIWDLRKRR  397 (471)
Q Consensus       389 ~iwd~~~~~  397 (471)
                      ++||++++.
T Consensus       234 ~iwd~~~~~  242 (379)
T 3jrp_A          234 IIWTQDNEQ  242 (379)
T ss_dssp             EEEEESSTT
T ss_pred             EEEeCCCCC
Confidence            999998865

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=3.9e-30  Score=246.18  Aligned_cols=240  Identities=18%  Similarity=0.173  Sum_probs=200.5

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEE--eeCCCCCCccEEEEEeCCCc
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEF--HPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ...+.+|..+|++++|+|++++|++|+.||.|++||+.+++.+. +..|...|.+++|  +|++.     +|++++.||.
T Consensus        79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-----~l~~~~~dg~  152 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-----CVMTGSWDKT  152 (368)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-----EEEEEETTSE
T ss_pred             EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-----EEEEccCCCc
Confidence            35677899999999999999999999999999999999988766 5679999999999  67766     7999999999


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc------ccccCCCCcceEEEEECCCCCE--
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL------ANLEGHEPFRVSRIKFHPSGRF--  294 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~--  294 (471)
                      |++||+.+++.+..+..+.  .+.++.+.+  ..+++++.++.+.++...      ..........+.++.+.++...  
T Consensus       153 i~vwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPE--RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP  228 (368)
T ss_dssp             EEEECSSCSSCSEEEECSS--CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred             EEEEECCCCcEEEEEecCC--CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence            9999999999988888765  566666654  578888888886664322      1222222345667776665554  


Q ss_pred             --EEEEecCCeEEEEECCCC---cEEEEeeCCCC------------CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy11350        295 --LGTCCWDHSWRLWDLNQG---QEVLHQEGHGK------------PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI  357 (471)
Q Consensus       295 --l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~------------~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~  357 (471)
                        +++++.||.|++||++..   ..+..+.+|..            +|++++|+|++++|++|+.||.|++||+.+++++
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~  308 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL  308 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence              999999999999999987   55677777765            7999999999999999999999999999999999


Q ss_pred             EEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        358 MFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       358 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      ..+.+|...|.+++|+|+|++|++|+.|+..+.|++-
T Consensus       309 ~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          309 KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            9999999999999999999999999999866555544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.1e-30  Score=238.06  Aligned_cols=209  Identities=13%  Similarity=0.110  Sum_probs=160.8

Q ss_pred             CcCeEEEEEecC----CCEEEEEeC--------------------CCcEEEEeC-CCCceEEEeecCCCCEEEEEEee--
Q psy11350        152 TRPISYCSFSPD----SQHVATASW--------------------SGLCKLWTV-PECELVQTFRGHDCNVGAIEFHP--  204 (471)
Q Consensus       152 ~~~V~~~~~s~~----~~~l~tg~~--------------------dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~--  204 (471)
                      .+.|.+++|+||    ++++++++.                    |+.|++|++ ++|+.+..+.+|...+..++|+|  
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            346778888888    778887653                    788888888 55888888888888888888888  


Q ss_pred             -CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC--cceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCc
Q psy11350        205 -LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP--FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPF  281 (471)
Q Consensus       205 -~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~  281 (471)
                       ++.     +|++++.|++|+|||+.+++++.++.++..  ..+.+++|+|+|.++++++.+..                
T Consensus       191 g~~~-----~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~----------------  249 (356)
T 2w18_A          191 GMQE-----ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA----------------  249 (356)
T ss_dssp             TSTT-----EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------------
T ss_pred             CCCc-----eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC----------------
Confidence             445     799999999999999999999999976542  35777788888887776653210                


Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-----eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-----EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                                ...+++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++|+.|++|+|||+.++++
T Consensus       250 ----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~  317 (356)
T 2w18_A          250 ----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC  317 (356)
T ss_dssp             ------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE
T ss_pred             ----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE
Confidence                      124789999999999999999887655     3676666555554  78999999999999999999999


Q ss_pred             EEEecccCcCEE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        357 IMFLEGHLKSVF-SVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       357 ~~~~~~h~~~v~-~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +.++.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus       318 l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999987665 5899999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=252.89  Aligned_cols=243  Identities=23%  Similarity=0.358  Sum_probs=196.3

Q ss_pred             cceeeeeecCC------------cCeEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceE--------------------
Q psy11350        142 LSIYCSQVGDT------------RPISYCSFSPDS--QHVATASWSGLCKLWTVPECELV--------------------  187 (471)
Q Consensus       142 ~~~~~~~~gh~------------~~V~~~~~s~~~--~~l~tg~~dg~i~iwd~~~~~~~--------------------  187 (471)
                      +.....+.+|.            .+|++++|+|++  .+|++++.||.|++||+.++...                    
T Consensus        71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~  150 (447)
T 3dw8_B           71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT  150 (447)
T ss_dssp             EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCC
T ss_pred             eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccccc
Confidence            33566778998            899999999998  79999999999999998764432                    


Q ss_pred             -------------------EE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-Ccceee-------ecC
Q psy11350        188 -------------------QT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-DTPLAN-------LEG  239 (471)
Q Consensus       188 -------------------~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-------~~~  239 (471)
                                         .. ..+|...|.+++|+|++.     +|++| .||.|++||+.+ +..+..       +..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (447)
T 3dw8_B          151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-----TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE  224 (447)
T ss_dssp             SCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-----EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG
T ss_pred             ceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC-----EEEEe-CCCeEEEEECCCCCceeeeeecccccccc
Confidence                               12 357999999999999987     78888 799999999984 444432       344


Q ss_pred             CCCcceEEEEECCCC-CEEEEEeCCCeEEeccc---------cccccCCCC-----------cceEEEEECCCCCEEEEE
Q psy11350        240 HEPFRVSRIKFHPSG-RFLGTCCWDHSWRLDTP---------LANLEGHEP-----------FRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~~~---------~~~~~~~~~-----------~~v~~l~~~~~~~~l~~~  298 (471)
                      |.. .|.+++|+|++ .++++++.|+.+.++..         ...+..+..           ..|.+++|+|++++|+++
T Consensus       225 ~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          225 LTE-VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             CCC-CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             cCc-ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence            544 89999999999 99999999999777542         233444432           279999999999999999


Q ss_pred             ecCCeEEEEECCC-CcEEEEeeCCCCC---------------eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        299 CWDHSWRLWDLNQ-GQEVLHQEGHGKP---------------VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       299 ~~dg~i~iwd~~~-~~~~~~~~~~~~~---------------v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      +. +.|++||+++ ++++..+.+|...               +..++|+|++.+|++|+.||.|++||+.+++.+. +.+
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~  381 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEA  381 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EEC
T ss_pred             eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eee
Confidence            98 9999999997 8888888887532               3349999999999999999999999999987653 222


Q ss_pred             ---------------------------------cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        363 ---------------------------------HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       363 ---------------------------------h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                                                       +...|..++|+|++.+|++++.++ +++|.-+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          382 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                                             345688999999999999998775 7788654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.1e-28  Score=236.91  Aligned_cols=246  Identities=11%  Similarity=0.060  Sum_probs=202.7

Q ss_pred             eeecCCcCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+.+| ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+.+++|+|++..    ++++++.++.|++
T Consensus        27 ~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~----l~~~~~~~~~v~v  100 (391)
T 1l0q_A           27 TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQ----VYVTNMASSTLSV  100 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE----EEEEETTTTEEEE
T ss_pred             EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCE----EEEEECCCCEEEE
Confidence            34455 458999999999987 567689999999999999998887665 8999999999983    3355667799999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEE-EEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEE-EEE
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFL-GTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFL-GTC  298 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i-~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l-~~~  298 (471)
                      ||+.+++.+..+..+.  .+.+++|+|+++++ ++++.++.+.++..     ...+..+  ..+.+++|+|++++| +++
T Consensus       101 ~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          101 IDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             EETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEE
T ss_pred             EECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEe
Confidence            9999998888877654  68999999999987 67777888666542     2222222  357999999999987 567


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      +.++.|++||+++++.+..+. +...+.+++|+|++++|++++   .++.|++||+.+++.+..+..|. .+.+++|+|+
T Consensus       177 ~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~d  254 (391)
T 1l0q_A          177 FDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPD  254 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred             CCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccC
Confidence            788999999999998777665 456789999999999999888   68999999999999988888764 5899999999


Q ss_pred             CCEE-EEEeCCCcEEEEECCCccchheecc
Q psy11350        376 GYHL-ATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       376 ~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +++| ++++.|+.|++||+.+++++..+..
T Consensus       255 g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          255 GKKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            9877 6778899999999999988877653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.3e-29  Score=243.04  Aligned_cols=197  Identities=12%  Similarity=0.077  Sum_probs=162.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS--WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .+...+.+++|||||++|++++  .|++|+|||+.+++.+..+. |...|.+++|+|++.     ++++++. +.+.+|+
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~-----~l~s~s~-~~~~~~~  203 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGK-----VVAYITG-SSLEVIS  203 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSS-----EEEEECS-SCEEEEE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCc-----eEEeccc-eeEEEEE
Confidence            4556799999999999987654  78999999999999998886 778899999999998     6888775 5567777


Q ss_pred             CCCCcceeee-cCCCCcceEEEEECCCCCEEEEEeCCCe-------EEeccc------cccccCCCCcceEEEEECCCCC
Q psy11350        228 LDKDTPLANL-EGHEPFRVSRIKFHPSGRFLGTCCWDHS-------WRLDTP------LANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       228 ~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~i~~~~~d~~-------~~~~~~------~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      ..++..+... .......+.+++|+|++.++++++.++.       |.+...      ...+.+| ...|++++|+|+|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~  282 (365)
T 4h5i_A          204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGE  282 (365)
T ss_dssp             TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSC
T ss_pred             eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCC
Confidence            7677665433 3333448999999999999999998873       222211      2234455 55799999999999


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEe-eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG  354 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~  354 (471)
                      +||+|+.|++|+|||+++++++..+ .+|..+|++++|+|||++|++|+.|++|+|||+...
T Consensus       283 ~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          283 LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999998875 789999999999999999999999999999999643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.2e-30  Score=251.15  Aligned_cols=237  Identities=14%  Similarity=0.117  Sum_probs=171.4

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE-----EeecCCCCEEEEEEee--------CCCCCCccEEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ-----TFRGHDCNVGAIEFHP--------LPSEGAVCSLAS  216 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~--------~~~~~~~~~l~s  216 (471)
                      +|...+....+++++.+|++|+.|++|+|||+.++....     .+.+|.+.|++++|+|        ++.     +|++
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-----~las  161 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-----VIAS  161 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-----EEEE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-----EEEE
Confidence            455555666667778899999999999999998876543     3578999999999998        444     7999


Q ss_pred             EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC-EEEEEeCCCeEEecccccc---------------------
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPLAN---------------------  274 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~~~---------------------  274 (471)
                      |+.|++|+|||+.++.++..+..+.. .+.+++|+|++. ++++++.|+.+++|.....                     
T Consensus       162 ~s~D~tv~~Wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          162 VGDDCTLIIWRLTDEGPILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             EECCCeEEEEECCCCceeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            99999999999988887777776665 899999999875 7999999999777532110                     


Q ss_pred             ---------ccCCCCcceEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEE---------------
Q psy11350        275 ---------LEGHEPFRVSRIKFH-PSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS---------------  329 (471)
Q Consensus       275 ---------~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~---------------  329 (471)
                               ..+| ...+.++.|+ |+++.|++++.|+++++||+..++....+..|...+..+.               
T Consensus       241 ~~~~~~~~~~~~~-~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          241 TLPLVNTCHSSGI-ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             SGGGC------CC-SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred             cccceeeeecccc-cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence                     1122 3467888886 7999999999999999999998776666655554444333               


Q ss_pred             ---EeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        330 ---FQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       330 ---~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                         |+|  ++.++++|+.||.|++||+.+++++..+.+|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence               333  344677888999999999999998888888999999999999999999998776 5566543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=5.3e-29  Score=244.43  Aligned_cols=239  Identities=22%  Similarity=0.367  Sum_probs=196.7

Q ss_pred             cCeEEEEEecCC----------CEEEEEeC----CCcEEEEeCC--------------------------CCce-EEEee
Q psy11350        153 RPISYCSFSPDS----------QHVATASW----SGLCKLWTVP--------------------------ECEL-VQTFR  191 (471)
Q Consensus       153 ~~V~~~~~s~~~----------~~l~tg~~----dg~i~iwd~~--------------------------~~~~-~~~~~  191 (471)
                      -|..++.|.|+.          .+|++|+.    ...|.++++.                          +++. .....
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            467888999875          46777764    3467777532                          1122 23445


Q ss_pred             cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC----------CcceeeecCCCCcceEEEEECCCCC-EEEEE
Q psy11350        192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK----------DTPLANLEGHEPFRVSRIKFHPSGR-FLGTC  260 (471)
Q Consensus       192 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~i~~~  260 (471)
                      .|.+.|++++|+|.+..    +|++++.||.|++|++.+          ...+..+..|.. .+.+++|+|++. +|+++
T Consensus       126 ~h~~~v~~l~~~p~~~~----~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNAC----VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEE----EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCc----EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEEE
Confidence            79999999999997432    799999999999999976          567777777776 899999999998 99999


Q ss_pred             eCCCeEEecccc------------ccccCCCCcceEEEEECC-CCCEEEEEecCCeEEEEECCCC---cEEEEeeCCCCC
Q psy11350        261 CWDHSWRLDTPL------------ANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQG---QEVLHQEGHGKP  324 (471)
Q Consensus       261 ~~d~~~~~~~~~------------~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~  324 (471)
                      +.||.+.++...            ..+..| ...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            999997775432            223345 56799999999 7789999999999999999987   567778899999


Q ss_pred             eEEEEEeCCCC-EEEEEeCCCeEEEEeCCC-CeeEEEecccCcCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcc
Q psy11350        325 VYCMSFQGDGS-VVATGGLDAFGRVWDLRT-GRCIMFLEGHLKSVFSVDFSPDGY-HLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       325 v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~  397 (471)
                      |++++|+|++. +|++|+.||.|++||+++ ..++..+.+|...|++++|+|++. +|++++.||.|+|||+....
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            99999999887 789999999999999998 567888999999999999999884 79999999999999998743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.9e-29  Score=236.98  Aligned_cols=206  Identities=22%  Similarity=0.339  Sum_probs=174.6

Q ss_pred             EEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc----ceeeecCCCCcceEEEEECC--CCCEEEEEe
Q psy11350        188 QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT----PLANLEGHEPFRVSRIKFHP--SGRFLGTCC  261 (471)
Q Consensus       188 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~  261 (471)
                      ..+.+|...|++++|+|++.     +|++|+.||.|++||+.++.    ....+..|.. .|.+++|+|  ++.+|++++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGR-----HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-SIVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSS-----EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-CEEEEEECCGGGCSEEEEEE
T ss_pred             ccCcccccceeEEEEcCCCC-----EEEEeeCCCeEEEEECCCCCCcceecceeccCCC-cEEEEEEcCCCCCCEEEEEc
Confidence            34678999999999999988     79999999999999998763    4555666766 899999999  699999999


Q ss_pred             CCCeEEeccc--------------cccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEECCCCcEEEEe-------
Q psy11350        262 WDHSWRLDTP--------------LANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWDLNQGQEVLHQ-------  318 (471)
Q Consensus       262 ~d~~~~~~~~--------------~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~-------  318 (471)
                      .|+.+.+|..              ...+..| ...|.+++|+|+  +.+|++++.||.|++||+++++.+..+       
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeeccc-CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            9998766533              3344555 568999999999  999999999999999999887654332       


Q ss_pred             ------eCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCee--EEEecccCcCEEEEEEcCCC----CEEEEEe
Q psy11350        319 ------EGHGKPVYCMSFQGD---GSVVATGGLDAFGRVWDLRTGRC--IMFLEGHLKSVFSVDFSPDG----YHLATGS  383 (471)
Q Consensus       319 ------~~~~~~v~~~~~s~d---~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~----~~l~s~s  383 (471)
                            ..|...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                  267889999999997   89999999999998888877764  77888999999999999998    8999999


Q ss_pred             CCCcEEEEECCCccchh
Q psy11350        384 EDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~  400 (471)
                      .||.|++||++.+....
T Consensus       238 ~dg~i~iwd~~~~~~~~  254 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPL  254 (351)
T ss_dssp             TTSCEEEEEEEECC---
T ss_pred             CCCeEEEEeCCCCcCcc
Confidence            99999999998875544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=243.61  Aligned_cols=238  Identities=14%  Similarity=0.085  Sum_probs=199.5

Q ss_pred             ecCCcCeEEEEEecCCCEE-EEEeCCCcEEEEeCC--CCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        149 VGDTRPISYCSFSPDSQHV-ATASWSGLCKLWTVP--ECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l-~tg~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      .+|...|++++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .|...|.+++|+|++.     +|++++.+|.|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~~~~g~v  173 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-----TVIIADKFGDV  173 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-----EEEEEETTSEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-----EEEEEeCCCcE
Confidence            4789999999999999996 899999999999999  888888876  6778999999999998     79999999999


Q ss_pred             EEEeCCCCccee----eecCCCCcceEEEEECCC---CCEEEEEeCCCeEEeccc-----ccc-ccCCCCcceEEEEECC
Q psy11350        224 KLWSLDKDTPLA----NLEGHEPFRVSRIKFHPS---GRFLGTCCWDHSWRLDTP-----LAN-LEGHEPFRVSRIKFHP  290 (471)
Q Consensus       224 ~iwd~~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~i~~~~~d~~~~~~~~-----~~~-~~~~~~~~v~~l~~~~  290 (471)
                      .+|++.++....    .+.+|.. .|.+++|+|+   +++|++++.|+.+.+|..     ... +.+| ...|.+++|+ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~s-  250 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQEPILGHVS-MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH-KHFVSSICCG-  250 (450)
T ss_dssp             EEEETTSCCCSSCCCCCSEECSS-CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC-SSCEEEEEEC-
T ss_pred             EEEecCCcccccccceeeecccC-ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC-CCceEEEEEC-
Confidence            999998876554    5566655 8999999999   999999999999776543     222 3345 6689999999 


Q ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeC-------------------------CCCCeEEEEEeCCCCEEEEEe-CCC
Q psy11350        291 SGRFLGTCCWDHSWRLWDLNQGQEVLHQEG-------------------------HGKPVYCMSFQGDGSVVATGG-LDA  344 (471)
Q Consensus       291 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~~~~s~d~~~l~t~~-~dg  344 (471)
                      ++++|++++.|++|++||+.+++++..+..                         +...|.+++|+|++++|++++ .++
T Consensus       251 d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~  330 (450)
T 2vdu_B          251 KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK  330 (450)
T ss_dssp             STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence            999999999999999999999998877752                         345799999999999999998 899


Q ss_pred             eEEEEeC--CCC---eeEEEecccCcCEEEEEEcCCCCEEEEEeC------CCcEEEEECCC
Q psy11350        345 FGRVWDL--RTG---RCIMFLEGHLKSVFSVDFSPDGYHLATGSE------DNAVKIWDLRK  395 (471)
Q Consensus       345 ~i~iwd~--~~~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~------dg~i~iwd~~~  395 (471)
                      .|+||++  .++   +.+..+.+| +.|.+++|+|++.++++++.      +..|.+|.++.
T Consensus       331 ~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          331 CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            9999999  666   777788888 89999999996443333332      55688887653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.5e-28  Score=238.55  Aligned_cols=240  Identities=10%  Similarity=0.032  Sum_probs=199.4

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE-----EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ-----TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+.+++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|+|++.     ++++++.|+.|++||
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~s~~~d~~v~~~d  197 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-----LWVSQMQANAVHVFD  197 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-----EEEEEGGGTEEEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-----EEEEECCCCEEEEEE
Confidence            456699999977788888889999999999998887     4457889999999999887     799999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEe-CCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEe--
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCC--  299 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~--  299 (471)
                      +.+++.+..+..+.. .+.+++|+|+++++++++ .++.+.++..     ...+..  ...+.+++|+|++++|++++  
T Consensus       198 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          198 LKTLAYKATVDLTGK-WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             TTTCCEEEEEECSSS-SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCceEEEEEcCCCC-CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECC
Confidence            999998888876655 899999999999886555 7888666442     122222  34589999999999999988  


Q ss_pred             ------cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        300 ------WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSV-VATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       300 ------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                            .||.|++||+.+++.+..+ .|...+.+++|+|+++. +++++.++.|++||+.+++.+..+. +...+.+++|
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~  352 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL  352 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence                  4889999999998776655 45568899999999975 5666899999999999998888776 6788999999


Q ss_pred             cCCCCEEEEEeC---------------CCcEEEEECCCccchhee
Q psy11350        373 SPDGYHLATGSE---------------DNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       373 sp~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~  402 (471)
                      +|+|++|++++.               ||.|++||+.+++.+..+
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            999999988876               579999999988766544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.9e-27  Score=217.21  Aligned_cols=227  Identities=15%  Similarity=0.093  Sum_probs=171.0

Q ss_pred             eEEEEEecCCC---EEEEEeCCCcEEEEeCCCC---ceEEEeecCCCCEEEEEEeeCCCCC-------------------
Q psy11350        155 ISYCSFSPDSQ---HVATASWSGLCKLWTVPEC---ELVQTFRGHDCNVGAIEFHPLPSEG-------------------  209 (471)
Q Consensus       155 V~~~~~s~~~~---~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~-------------------  209 (471)
                      +.++-|-.-|-   .+++++ ...|++|+..++   +.++++..|..+|..|.+.|+..+.                   
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            45565654443   577888 789999999998   8888888888766666665532210                   


Q ss_pred             -----CccEEEEEeCCCcEEEEeCCCCcceee-ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcce
Q psy11350        210 -----AVCSLASCAQDGSVKLWSLDKDTPLAN-LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRV  283 (471)
Q Consensus       210 -----~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v  283 (471)
                           ....+++++.  .+.+|++.+++.+.. ..+|.. .|..++++|+|+.+...               ..| ...+
T Consensus       121 pd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~-~V~~~~~s~dG~~~~s~---------------~~~-~~~v  181 (356)
T 2w18_A          121 SDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQ-QVEVMTFAEDGGGKENQ---------------FLM-PPEE  181 (356)
T ss_dssp             -----CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTC-EEEEEEECTTSCEEEEE---------------EEC-CCSS
T ss_pred             CCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCC-cEEEEEECCCCceeeee---------------ccC-CCce
Confidence                 0114666553  488899988887777 455555 89999999999877642               233 3367


Q ss_pred             EEEEECC---CCCEEEEEecCCeEEEEECCCCcEEEEeeCCC---CCeEEEEEeCCCCEE------------EEEeCCCe
Q psy11350        284 SRIKFHP---SGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG---KPVYCMSFQGDGSVV------------ATGGLDAF  345 (471)
Q Consensus       284 ~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l------------~t~~~dg~  345 (471)
                      +.++|+|   ++.+|++++.|++|+|||+.+++++.++.+|.   ..+.+++|+|+|.++            ++|+.|++
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            8888988   77999999999999999999999999998754   367788999999876            56788999


Q ss_pred             EEEEeCCCCeeEEEe-----cccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        346 GRVWDLRTGRCIMFL-----EGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       346 i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      |++||..+++.+..+     .+|...+.+..++  +.++++|+.|++|+|||+.+++++.++.
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~  322 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP  322 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec
Confidence            999999999987765     4777666655554  8899999999999999999999988765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-28  Score=255.73  Aligned_cols=204  Identities=23%  Similarity=0.372  Sum_probs=175.3

Q ss_pred             EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC--CCcceeeecCCCCcceEEEEECCC--CCEEEEEeC
Q psy11350        187 VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD--KDTPLANLEGHEPFRVSRIKFHPS--GRFLGTCCW  262 (471)
Q Consensus       187 ~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s~~--~~~i~~~~~  262 (471)
                      +..+.+|.+.|++++|+|++.     +|++|+.||.|++||+.  ++..+..+.+|.. .|.+++|+|+  ++++++++.
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~-----~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK-----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-PVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             ------CCCCEEEECCCSSSC-----CEEEEETTTEEEEEEEETTEEEEEEEECCCSS-CEEEEEECCTTSCSEEEEEET
T ss_pred             eeecccCcceeEEEEECCCCC-----eEEEEECCCcEEEEecCCCCCccceeccCCcC-ceEEEEecCCCCCCEEEEEeC
Confidence            346789999999999999998     69999999999999997  4566777888876 8999999998  999999999


Q ss_pred             CCeEEeccc-------cccccCCCCcceEEEEECCC--CCEEEEEecCCeEEEEECCCC--cEEEEeeCCCCCeEEEEEe
Q psy11350        263 DHSWRLDTP-------LANLEGHEPFRVSRIKFHPS--GRFLGTCCWDHSWRLWDLNQG--QEVLHQEGHGKPVYCMSFQ  331 (471)
Q Consensus       263 d~~~~~~~~-------~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s  331 (471)
                      ||.+.+|..       ...+..| ...|.+++|+|+  +++|++|+.||.|++||++++  .....+.+|...|.+++|+
T Consensus        76 Dg~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  154 (753)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEECCCCcccccccccCC-CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence            999776542       2344455 668999999999  999999999999999999887  3455677899999999999


Q ss_pred             C-------------CCCEEEEEeCCCeEEEEeCCCC----eeEEEecccCcCEEEEEEcCC---CCEEEEEeCCCcEEEE
Q psy11350        332 G-------------DGSVVATGGLDAFGRVWDLRTG----RCIMFLEGHLKSVFSVDFSPD---GYHLATGSEDNAVKIW  391 (471)
Q Consensus       332 ~-------------d~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~---~~~l~s~s~dg~i~iw  391 (471)
                      |             ++.+|++|+.||.|++||++++    .+...+.+|...|++++|+|+   +.+|++|+.||.|++|
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence            9             5899999999999999999887    566788899999999999999   8999999999999999


Q ss_pred             ECCCcc
Q psy11350        392 DLRKRR  397 (471)
Q Consensus       392 d~~~~~  397 (471)
                      |++++.
T Consensus       235 d~~~~~  240 (753)
T 3jro_A          235 TQDNEQ  240 (753)
T ss_dssp             EESSSS
T ss_pred             cCCCCC
Confidence            998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4e-27  Score=227.83  Aligned_cols=229  Identities=12%  Similarity=0.048  Sum_probs=190.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcc
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR  244 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  244 (471)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++..    ++++++.|+.|++||+.+++.+..+..+.  .
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~----l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTK----VYVANAHSNDVSIIDTATNNVIATVPAGS--S   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE----EEEEEGGGTEEEEEETTTTEEEEEEECSS--S
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCE----EEEECCCCCeEEEEECCCCeEEEEEECCC--C
Confidence            467888899999999999999999888775 5899999999983    34677799999999999999888887766  8


Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEecccc-----ccccCCCCcceEEEEECCCCCEE-EEEecCCeEEEEECCCCcEEEE
Q psy11350        245 VSRIKFHPSGRFLGTCC-WDHSWRLDTPL-----ANLEGHEPFRVSRIKFHPSGRFL-GTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~-~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                      +.+++|+|+++++++++ .++.+.++...     ..+..  ...+.+++|+|++++| ++++.++.|++||+.+++.+..
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            99999999999886655 55776664322     22222  3368999999999977 6777899999999999988888


Q ss_pred             eeCCCCCeEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe---CCCcEEEEEC
Q psy11350        318 QEGHGKPVYCMSFQGDGSVV-ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS---EDNAVKIWDL  393 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s---~dg~i~iwd~  393 (471)
                      +..+ ..+.+++|+|++++| ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++   .++.|++||+
T Consensus       154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            7765 456999999999877 577789999999999998887776 556899999999999999888   6899999999


Q ss_pred             CCccchheecc
Q psy11350        394 RKRRLLKWCTQ  404 (471)
Q Consensus       394 ~~~~~~~~~~~  404 (471)
                      .+++++..+..
T Consensus       232 ~~~~~~~~~~~  242 (391)
T 1l0q_A          232 GTNKITARIPV  242 (391)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCeEEEEEec
Confidence            99988776654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.5e-28  Score=235.12  Aligned_cols=218  Identities=16%  Similarity=0.183  Sum_probs=177.2

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCC-----CEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDC-----NVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      +|...|.+++|||+|++||+++.||.|+|||..+  ++..+. |..     .|.+++|+|++.     +|++|+.||+|+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~-----~LAsgs~DGtVk  154 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES-----SIVVGNEDGELQ  154 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS-----CEEEEETTSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC-----EEEEEcCCCEEE
Confidence            5688999999999999999999999999999644  666667 665     499999999999     799999999999


Q ss_pred             EEeCCCCcc-------eeee----cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc--------cccCCCCcceEE
Q psy11350        225 LWSLDKDTP-------LANL----EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA--------NLEGHEPFRVSR  285 (471)
Q Consensus       225 iwd~~~~~~-------~~~~----~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~--------~~~~~~~~~v~~  285 (471)
                      |||+.++..       +..+    .+|. ..|.+++|+|+|  +++++.|+.+++|....        .+...+...|.+
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEECCCCccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            999988753       4555    4444 489999999999  88889999977764322        232233568999


Q ss_pred             EEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEE--eCCCCEEEEEeCCCeEEEEeCCC----------
Q psy11350        286 IKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSF--QGDGSVVATGGLDAFGRVWDLRT----------  353 (471)
Q Consensus       286 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~t~~~dg~i~iwd~~~----------  353 (471)
                      ++|+  ++.|++++ +++|++||+.+++......+|...|..++|  +||+..|++++.||+ ++|..+.          
T Consensus       232 vaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~  307 (588)
T 2j04_A          232 LKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIA  307 (588)
T ss_dssp             EEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSH
T ss_pred             EEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEE
Confidence            9999  68999887 799999999988774555589999999999  999999999999999 9998742          


Q ss_pred             -------------CeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        354 -------------GRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       354 -------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                                   +..+..+. +...|++++|+|||+.+|+++
T Consensus       308 a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          308 PYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             HHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEE
T ss_pred             EEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEE
Confidence                         11111222 244699999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.5e-27  Score=230.67  Aligned_cols=240  Identities=10%  Similarity=0.020  Sum_probs=201.4

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+.+|...|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++..    ++++++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDL----VYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTE----EEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCE----EEEEecCCCcEEEE
Confidence            34589999999999999999999999999999999999999999999999999999999883    33566689999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeC--------CCeEEeccccc----cccCCCCcceEEEEECCCCCE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--------DHSWRLDTPLA----NLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~--------d~~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      |+.+++.+..+..+.  .+.+++|+|+++++++++.        |+.+.++....    ....+ ...+.+++|+|+++.
T Consensus       240 d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~  316 (433)
T 3bws_A          240 DRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PGNKRHIVSGNTENK  316 (433)
T ss_dssp             ETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EECEEEEEECSSTTE
T ss_pred             ECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-CCCcceEEECCCCCE
Confidence            999998887777644  6999999999999998884        66655543211    11122 336889999999975


Q ss_pred             E-EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC---------------CCeEEEEeCCCCeeEE
Q psy11350        295 L-GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL---------------DAFGRVWDLRTGRCIM  358 (471)
Q Consensus       295 l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~---------------dg~i~iwd~~~~~~~~  358 (471)
                      + ++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++.               ||.|++||+.+++.+.
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence            5 566889999999999988877765 6778999999999998888876               5799999999999988


Q ss_pred             EecccCcCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q psy11350        359 FLEGHLKSVFSVDFSPDGYHLATGSE-DNAVKIWDLRK  395 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~~~~l~s~s~-dg~i~iwd~~~  395 (471)
                      .+.. ...+.+++|+|+|++|++++. |+.|++|++..
T Consensus       396 ~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          396 FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            8875 467999999999999988875 99999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=4e-28  Score=235.18  Aligned_cols=271  Identities=14%  Similarity=0.092  Sum_probs=178.9

Q ss_pred             CeEEEEE---ecCCCEEEEEeCCCcEEEEeCCCC----------ceEEEeecCCCCEEEEEEeeCCCC------------
Q psy11350        154 PISYCSF---SPDSQHVATASWSGLCKLWTVPEC----------ELVQTFRGHDCNVGAIEFHPLPSE------------  208 (471)
Q Consensus       154 ~V~~~~~---s~~~~~l~tg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~------------  208 (471)
                      ...++.|   +|++..|++++.++.|.+|+....          ..+.. ..+..++..+.|++....            
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFT-IQTGLPTLHLSFSSSCSYSENLHDGDGNVN   95 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEE-EECSSCEEEEEECTTCEEECC---------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEE-EecCCCeeeEeecCCccccccccCCCccee
Confidence            4455666   344444444445888999975311          11111 134455666666532110            


Q ss_pred             ---CCccEEEEEeCCCcEEEEeCCCCcce-----eeecCCCCcceEEEEECC--------CCCEEEEEeCCCeEEeccc-
Q psy11350        209 ---GAVCSLASCAQDGSVKLWSLDKDTPL-----ANLEGHEPFRVSRIKFHP--------SGRFLGTCCWDHSWRLDTP-  271 (471)
Q Consensus       209 ---~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~s~--------~~~~i~~~~~d~~~~~~~~-  271 (471)
                         ....+|++++.|++|+|||+.++...     ..+.+|.. .|.+++|+|        ++++|++++.|+++++|.. 
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC-ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence               00116999999999999999887543     34567776 899999998        8999999999999877653 


Q ss_pred             ----cccccCCCCcceEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEE-------------------------eeCC
Q psy11350        272 ----LANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQGQEVLH-------------------------QEGH  321 (471)
Q Consensus       272 ----~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-------------------------~~~~  321 (471)
                          ...+..| ...+.+++|+|++. +|++++.||+|++||+++++....                         ..+|
T Consensus       175 ~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  253 (393)
T 4gq1_A          175 DEGPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI  253 (393)
T ss_dssp             TTEEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred             CCceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence                2334445 45799999999875 899999999999999988754322                         2357


Q ss_pred             CCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcC--------------------CCCEEE
Q psy11350        322 GKPVYCMSFQ-GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSP--------------------DGYHLA  380 (471)
Q Consensus       322 ~~~v~~~~~s-~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp--------------------~~~~l~  380 (471)
                      ...+.++.|+ ||++.|++++.|+++++||+.+++....+..|...+..+.+.|                    ++.+++
T Consensus       254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (393)
T 4gq1_A          254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT  333 (393)
T ss_dssp             SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence            7788899987 6999999999999999999998877777766665555444333                    344677


Q ss_pred             EEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeec
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFD  460 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~d  460 (471)
                      +|+.||+|++||+.+++++..+.                                           .....+..++||||
T Consensus       334 sgs~Dg~V~lwd~~~~~~~~~~~-------------------------------------------~~~~~V~svafspd  370 (393)
T 4gq1_A          334 AHSQHGLIQLINTYEKDSNSIPI-------------------------------------------QLGMPIVDFCWHQD  370 (393)
T ss_dssp             EETTTTEEEEEETTCTTCCEEEE-------------------------------------------ECSSCEEEEEECTT
T ss_pred             EECCCCEEEEEECCCCcEEEEec-------------------------------------------CCCCcEEEEEEcCC
Confidence            88899999999999887654322                                           11123568899999


Q ss_pred             CCeEEEeecC
Q psy11350        461 SDLHAMVLNQ  470 (471)
Q Consensus       461 g~~lA~~~~~  470 (471)
                      |++||+.++.
T Consensus       371 G~~LA~as~~  380 (393)
T 4gq1_A          371 GSHLAIATEG  380 (393)
T ss_dssp             SSEEEEEESS
T ss_pred             CCEEEEEeCC
Confidence            9999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=9.2e-27  Score=222.42  Aligned_cols=231  Identities=11%  Similarity=0.108  Sum_probs=185.2

Q ss_pred             cCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        153 RPISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ..+..+++.+++++++ +|+.|+.|++||+.+++.+..+. |...|.++.|+++.       ++.+ .|+.|++||+.++
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-------~~~~-~~~~i~i~d~~~~  129 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-------IVVS-YGDVISVFKFGNP  129 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-------EEEE-ETTEEEEEESSTT
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-------EEEE-EcCEEEEEECCCC
Confidence            3588889999988874 67778999999999999998887 56799999998763       3433 4789999999888


Q ss_pred             -cceeeecCCCCcceEEEEECCCCCEEEE--EeCCCeEEeccc---------------------cccccCCCCcceEEEE
Q psy11350        232 -TPLANLEGHEPFRVSRIKFHPSGRFLGT--CCWDHSWRLDTP---------------------LANLEGHEPFRVSRIK  287 (471)
Q Consensus       232 -~~~~~~~~~~~~~v~~~~~s~~~~~i~~--~~~d~~~~~~~~---------------------~~~~~~~~~~~v~~l~  287 (471)
                       +.+..+..    ....+++++  .++++  |+.+|.+.++..                     ...+.+| ...|.+++
T Consensus       130 ~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~  202 (355)
T 3vu4_A          130 WKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVR  202 (355)
T ss_dssp             CCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEE
T ss_pred             ceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEE
Confidence             66666554    344566677  66665  578888666432                     3456666 66899999


Q ss_pred             ECCCCCEEEEEecCCe-EEEEECCCCcEEEEee-C-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee--EEEec-
Q psy11350        288 FHPSGRFLGTCCWDHS-WRLWDLNQGQEVLHQE-G-HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC--IMFLE-  361 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~--~~~~~-  361 (471)
                      |+|++++|++++.|++ |++||+++++++..+. + |...|++++|+|++++|++++.|++|+|||++.+..  ...+. 
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~  282 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG  282 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc
Confidence            9999999999999998 9999999999999998 5 999999999999999999999999999999976531  11111 


Q ss_pred             --------------------ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        362 --------------------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       362 --------------------~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                                          .+......++|+|++++|++++.||.+++|++..+...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence                                11223467899999999999999999999998776543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-27  Score=225.18  Aligned_cols=229  Identities=10%  Similarity=0.031  Sum_probs=182.8

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCC---------CCceEEEee-cCCCCEEEEEEee--CCCCCCccEEEEEeC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVP---------ECELVQTFR-GHDCNVGAIEFHP--LPSEGAVCSLASCAQ  219 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~---------~~~~~~~~~-~h~~~v~~l~~~~--~~~~~~~~~l~s~~~  219 (471)
                      ...|.++.|+|+   +++|+.|++|++|+..         +++.+..+. +|..+|.+++|+|  ++.     ++++++.
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~l~s~s~  147 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-----YFIWADN  147 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-----EEEEEET
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-----EEEEEeC
Confidence            456778888887   9999999999999665         555455554 6778999999999  887     7999999


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----c-ccccC-CCCcceEEEEECCCC
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----L-ANLEG-HEPFRVSRIKFHPSG  292 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~-~~~~~-~~~~~v~~l~~~~~~  292 (471)
                      ||+|++||+.+++.......+....+.+++|+|++.++++|+.|+.++++..     . ..+.. | ...|.+++|+|++
T Consensus       148 dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~~g  226 (343)
T 3lrv_A          148 RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDE-EAKIKEVKFADNG  226 (343)
T ss_dssp             TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCT-TSCEEEEEECTTS
T ss_pred             CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccC-CCCEEEEEEeCCC
Confidence            9999999999998877776665557999999999999999999999777532     2 34555 5 6689999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeC---CCCCeE--EEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEEEecccCcC
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEG---HGKPVY--CMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIMFLEGHLKS  366 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~h~~~  366 (471)
                      .+|++++ +++|++||+++++.+..+..   |..++.  +++|+|+|++|++++. |+.|+||++.........    .+
T Consensus       227 ~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~  301 (343)
T 3lrv_A          227 YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DE  301 (343)
T ss_dssp             SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EE
T ss_pred             CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cC
Confidence            9999999 55999999999876655443   444444  6999999999999998 999999999766443332    57


Q ss_pred             EEEEEEcC---CCCEEEEEeCCCcEEEEECC
Q psy11350        367 VFSVDFSP---DGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       367 v~~~~~sp---~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +..++|.|   +...+++++.||.+.++-..
T Consensus       302 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          302 ESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ceeEecCccccccceeEEEecCCceEEEEec
Confidence            88889998   88999999999999988543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2.4e-26  Score=241.22  Aligned_cols=308  Identities=10%  Similarity=0.029  Sum_probs=217.0

Q ss_pred             CcCeEEEEEecCCCEEEEEeC-CC-----cEEEEeCCCCceEEEeecCCC------------------------CEEEEE
Q psy11350        152 TRPISYCSFSPDSQHVATASW-SG-----LCKLWTVPECELVQTFRGHDC------------------------NVGAIE  201 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~l~  201 (471)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     899999999988777765433                        378999


Q ss_pred             EeeCCCCCCccEEEEEeCCCcEEEEeCCCCc--ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccc
Q psy11350        202 FHPLPSEGAVCSLASCAQDGSVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANL  275 (471)
Q Consensus       202 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~  275 (471)
                      |+|++.     .|++++. +.|.+||+.++.  ....+..+.. .+..++|+|||++|++++.+ .+.++..    ...+
T Consensus       116 ~SpDg~-----~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~-~~~~~~~SPDG~~la~~~~~-~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSPDAQ-----RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG-FATDAKLSPKGGFVSFIRGR-NLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECTTSS-----EEEEEET-TEEEEEESSSCSTTSCCBCCCSSS-CEEEEEECTTSSEEEEEETT-EEEEEETTTTEEEEC
T ss_pred             ECCCCC-----EEEEEeC-CcEEEEECCCCCcceEEEcccCCc-ccccccCCCCCCEEEEEeCC-cEEEEecCCCCEEEe
Confidence            999998     6777776 999999998873  3444554443 79999999999999998865 4333221    1111


Q ss_pred             cCCCCc----------------ceEEEEECCCCCEEEEEecCC---------------------------------eEEE
Q psy11350        276 EGHEPF----------------RVSRIKFHPSGRFLGTCCWDH---------------------------------SWRL  306 (471)
Q Consensus       276 ~~~~~~----------------~v~~l~~~~~~~~l~~~~~dg---------------------------------~i~i  306 (471)
                      ......                .+..++|+|||++|++++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            111111                147799999999999998776                                 8999


Q ss_pred             EECCC-CcEEEEee--CCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEeCCCCeeEEEecccCc----CEEEEEEcC
Q psy11350        307 WDLNQ-GQEVLHQE--GHGKPVYCMSFQGDGSVVATGGL-----DAFGRVWDLRTGRCIMFLEGHLK----SVFSVDFSP  374 (471)
Q Consensus       307 wd~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~sp  374 (471)
                      ||+.+ ++......  .|...+.+++| |||++|++++.     +..|++||+.++++...+..+..    .+.+++|+|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            99988 77654433  47788999999 99999987654     56799999999988777665543    456899999


Q ss_pred             CCCEEEEEeCCCcEEEEECC-CccchheecccCCCccceeeccccceeeeecccCCC--cccccchhh-hcccccceeee
Q psy11350        375 DGYHLATGSEDNAVKIWDLR-KRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPG--IGNIISSAL-KEQVEPIPLLL  450 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~  450 (471)
                      ||+++++++.||.++||.++ .++ +..+.........+..++.+....++.....+  ...++.... ......+....
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~  425 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP  425 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC
Confidence            99999999999988888776 344 44444332222222345556544333333222  233333222 22233343344


Q ss_pred             cccceeeeecCCeEEEeec
Q psy11350        451 DIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       451 ~~~~l~fs~dg~~lA~~~~  469 (471)
                      .+..++|||||+.||+...
T Consensus       426 ~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          426 GMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             SEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEECCCCCEEEEEec
Confidence            5668899999999988653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=4.9e-24  Score=197.07  Aligned_cols=221  Identities=12%  Similarity=0.113  Sum_probs=172.6

Q ss_pred             EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-CcceeeecCCCCcceEE
Q psy11350        169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-DTPLANLEGHEPFRVSR  247 (471)
Q Consensus       169 tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~  247 (471)
                      .++.++.|++||+.+++.. .+..|...|.+++|+|++.     +|++++ ++.|.+||+.+ ++.......+....+.+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~-----~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGK-----YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSS-----EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCC-----EEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence            3457899999999988766 4556788999999999998     677765 88999999998 87777666665557899


Q ss_pred             EEECCCCCEEEEEeCC--Ce---EEec--c-ccccccCCCCcceEEEEECCCCCEEE-EEecCCeEEEEECCC-CcEEEE
Q psy11350        248 IKFHPSGRFLGTCCWD--HS---WRLD--T-PLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHSWRLWDLNQ-GQEVLH  317 (471)
Q Consensus       248 ~~~s~~~~~i~~~~~d--~~---~~~~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~  317 (471)
                      ++|+|+++++++++.+  +.   |.+.  . ....+..+  ..+..++|+|++++|+ +++.++.+++|++.. ......
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS--SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC--CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            9999999999999843  33   3331  1 12222222  2488999999999887 778899999998632 234456


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCC-CCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC----------
Q psy11350        318 QEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLR-TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED----------  385 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d----------  385 (471)
                      +..|...+.+++|+|++++|++++ .++.++||++. .+..+..+..|...+.+++|+|+|++|++++.+          
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  247 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL  247 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence            677888999999999999887766 58899999886 556677788888899999999999999988766          


Q ss_pred             -CcEEEEECCCccc
Q psy11350        386 -NAVKIWDLRKRRL  398 (471)
Q Consensus       386 -g~i~iwd~~~~~~  398 (471)
                       +.|.+||+.+++.
T Consensus       248 ~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          248 DVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEEEETTSCSC
T ss_pred             ceEEEEEecCCCCc
Confidence             4699999987654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.4e-23  Score=209.22  Aligned_cols=236  Identities=12%  Similarity=0.025  Sum_probs=188.7

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceEEEeecCCCCEEEEEEee----CCCCCCccEEEEEe-CCCcEEEEe
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTV--PECELVQTFRGHDCNVGAIEFHP----LPSEGAVCSLASCA-QDGSVKLWS  227 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~----~~~~~~~~~l~s~~-~dg~i~iwd  227 (471)
                      +.+++|+|||++|++++.++.|.+||+  .+++.+..+.. ...+..++|+|    ++.     ++++++ .+++|.+||
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~-----~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR-----YTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT-----EEEEEEEESSEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC-----EEEEEEccCCeEEEEe
Confidence            889999999999999999999999999  88998888874 45679999999    888     677776 589999999


Q ss_pred             CCCCcceeeecCC----------CCcceEEEEECCCCCEEE-EEeCCCeEEecccc-----c--cccCCCCcceEEEEEC
Q psy11350        228 LDKDTPLANLEGH----------EPFRVSRIKFHPSGRFLG-TCCWDHSWRLDTPL-----A--NLEGHEPFRVSRIKFH  289 (471)
Q Consensus       228 ~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~i~-~~~~d~~~~~~~~~-----~--~~~~~~~~~v~~l~~~  289 (471)
                      ..+++++..+...          ....+..+.++|++..++ +...++.+.++...     .  .+ .+ ...+..+.|+
T Consensus       255 ~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~-~~~~~~~~~s  332 (543)
T 1nir_A          255 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GA-APFLHDGGWD  332 (543)
T ss_dssp             TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-EC-CSSCCCEEEC
T ss_pred             ccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-cc-CcCccCceEC
Confidence            9999988887642          233688999999877654 44556665443211     1  11 12 3357789999


Q ss_pred             CCCCEEEEEe-cCCeEEEEECCCCcEEEEeeC----CCCCeEEEEEeCC-CCEEEEEe-CCCeEEEEeCCC-------Ce
Q psy11350        290 PSGRFLGTCC-WDHSWRLWDLNQGQEVLHQEG----HGKPVYCMSFQGD-GSVVATGG-LDAFGRVWDLRT-------GR  355 (471)
Q Consensus       290 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~d-~~~l~t~~-~dg~i~iwd~~~-------~~  355 (471)
                      |+|++|++++ .+++|.+||+.+++++..+..    |.+....+ ++|+ +.+++++. .|++|.+||+.+       ++
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~  411 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  411 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCe
Confidence            9999877665 588999999999998887764    55444333 5776 66666765 589999999998       89


Q ss_pred             eEEEecccCcCEEEEEEcCCCCEEEEEe-------CCCcEEEEECCCccch
Q psy11350        356 CIMFLEGHLKSVFSVDFSPDGYHLATGS-------EDNAVKIWDLRKRRLL  399 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s-------~dg~i~iwd~~~~~~~  399 (471)
                      ++.++.+|.+.+..++++|+|++|++++       .+++|.|||+.+++.+
T Consensus       412 ~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          412 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            9999999998999999999999999987       2779999999999877

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=4e-24  Score=208.42  Aligned_cols=244  Identities=12%  Similarity=0.054  Sum_probs=188.2

Q ss_pred             eeeecCCcCeEEEEEec--------------CCCEEEEEeCC------CcEEEEeCCCCceEEEeecCCCCEEEEEEeeC
Q psy11350        146 CSQVGDTRPISYCSFSP--------------DSQHVATASWS------GLCKLWTVPECELVQTFRGHDCNVGAIEFHPL  205 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~--------------~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~  205 (471)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||+. +.....+.+|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence            34678888887777765              25667666644      799999987 4556777889999999999999


Q ss_pred             CCCCCccEEEEEeCCC---cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEE-EEeCCCe--EEec---c-ccccc
Q psy11350        206 PSEGAVCSLASCAQDG---SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHS--WRLD---T-PLANL  275 (471)
Q Consensus       206 ~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~-~~~~d~~--~~~~---~-~~~~~  275 (471)
                      +.     .|++++.++   .|++||+.+++... +..+.. .+.+++|+|+|+.|+ +++.++.  +.++   . ....+
T Consensus       190 g~-----~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l  262 (415)
T 2hqs_A          190 GS-----KLAYVTFESGRSALVIQTLANGAVRQ-VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  262 (415)
T ss_dssp             SS-----EEEEEECTTSSCEEEEEETTTCCEEE-EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred             CC-----EEEEEEecCCCcEEEEEECCCCcEEE-eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC
Confidence            98     789988875   99999999887653 444443 799999999999888 5565654  3322   2 12334


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEec-CC--eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEE
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTCCW-DH--SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD---AFGRVW  349 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d---g~i~iw  349 (471)
                      ..+ ...+.+++|+|+|++|++++. ++  .|++||+.+++. ..+..+...+.+++|+|||++|++++.+   ..|++|
T Consensus       263 ~~~-~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          263 TDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             CCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             cCC-CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence            444 457999999999999998886 44  688889988764 4455677889999999999999988764   589999


Q ss_pred             eCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCccchhee
Q psy11350        350 DLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN---AVKIWDLRKRRLLKWC  402 (471)
Q Consensus       350 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~  402 (471)
                      |+.+++.. .+..|. .+.+++|+|+|++|++++.++   .|++||+..+ .+..+
T Consensus       341 d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l  393 (415)
T 2hqs_A          341 DLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARL  393 (415)
T ss_dssp             ETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEEC
T ss_pred             ECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEe
Confidence            99988764 555554 899999999999999988877   7999998744 34444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=3e-23  Score=197.39  Aligned_cols=282  Identities=9%  Similarity=-0.010  Sum_probs=208.9

Q ss_pred             CCcCeEEEEEecCCCEEEEEeC-------CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        151 DTRPISYCSFSPDSQHVATASW-------SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.+..+... ..+..++|+|++..    ++++...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~----l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQT----LWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTE----EEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCE----EEEEecCCCEE
Confidence            3456889999999999988874       468999999999988887753 44678999999873    45556668999


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe--cC
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC--WD  301 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~d  301 (471)
                      .+||+.+++.+..+..+...                              .........+.+++|+|+++++++++  .+
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRK------------------------------RTEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCC------------------------------CCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             EEEeCCCCeeEEEEecCCCc------------------------------cccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            99999998877666543320                              00000022368899999999887776  47


Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc----cCcCEEEEEEcCCCC
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG----HLKSVFSVDFSPDGY  377 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~sp~~~  377 (471)
                      +.|.+||+.+++.+..+..+...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|+
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            8899999999998888876666788999999999999999999999999999988877664    455788999999999


Q ss_pred             EEEEEeC-CCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeeccccee
Q psy11350        378 HLATGSE-DNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLT  456 (471)
Q Consensus       378 ~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  456 (471)
                      ++++++. ++.|.+||+.+++.+..+....+   ..+.+..+....++.....+...++.......+..++.......++
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  320 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA  320 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEE
Confidence            7776655 49999999999998887765433   2244455554333333333334444444444444455545678899


Q ss_pred             eeecCCeEEEeecC
Q psy11350        457 FKFDSDLHAMVLNQ  470 (471)
Q Consensus       457 fs~dg~~lA~~~~~  470 (471)
                      |+|||++|.+...+
T Consensus       321 ~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          321 LSADGKTLYVSVKQ  334 (353)
T ss_dssp             ECTTSCEEEEEEEC
T ss_pred             EcCCCCEEEEEEcc
Confidence            99999988776543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=3.2e-23  Score=208.39  Aligned_cols=298  Identities=10%  Similarity=0.017  Sum_probs=211.4

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC--CCCcceee
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL--DKDTPLAN  236 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~  236 (471)
                      +|+|++.++++++.+++|.+||..+++++.++..+.. +..++|+|++.     +|++++.|++|.+||+  .+++.+..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~-----~l~v~~~d~~V~v~D~~~~t~~~~~~  217 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGR-----YLLVIGRDARIDMIDLWAKEPTKVAE  217 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSC-----EEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCC-----EEEEECCCCeEEEEECcCCCCcEEEE
Confidence            3799999999999999999999999999999984333 88999999998     7999999999999999  78888888


Q ss_pred             ecCCCCcceEEEEECC----CCCEEEEEeC-CCeEEeccc-----cccccC----------CCCcceEEEEECCCCCE-E
Q psy11350        237 LEGHEPFRVSRIKFHP----SGRFLGTCCW-DHSWRLDTP-----LANLEG----------HEPFRVSRIKFHPSGRF-L  295 (471)
Q Consensus       237 ~~~~~~~~v~~~~~s~----~~~~i~~~~~-d~~~~~~~~-----~~~~~~----------~~~~~v~~l~~~~~~~~-l  295 (471)
                      +....  .+..++|+|    +|+++++++. ++.+.++..     ...+..          |....+..+.++|++.. +
T Consensus       218 i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          218 IKIGI--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EECCS--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EecCC--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            77533  689999999    9999998884 677655421     222221          22336889999997765 5


Q ss_pred             EEEecCCeEEEEECCCCcEEE--EeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEecc----cCcCEE
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVL--HQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEG----HLKSVF  368 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~----h~~~v~  368 (471)
                      ++...++.|.+||+.+.+.+.  .+ .+...+.++.|+|+|++|++++ .+++|.+||+.+++++..+..    |.+...
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            566778999999998865443  33 3566788999999999776554 689999999999999888774    554444


Q ss_pred             EEEEcCC-CCEEEEEe-CCCcEEEEECCC-------ccchheecccCCCccceeeccccceeeeecc-cCC-----Cccc
Q psy11350        369 SVDFSPD-GYHLATGS-EDNAVKIWDLRK-------RRLLKWCTQLLPNSIGVTSLLTDLYIDVLES-LNP-----GIGN  433 (471)
Q Consensus       369 ~~~~sp~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~-----~~~~  433 (471)
                      .+ ++|+ +..++++. .|++|.+||+.+       .++++++..+.. ....+.+..+........ .++     +...
T Consensus       375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~  452 (543)
T 1nir_A          375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVA  452 (543)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred             cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-CceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence            44 5676 66777775 689999999998       788887765432 223333444433332221 111     1222


Q ss_pred             ccchhhhccc-cccee---------eecccceeeeecCCeEEEe
Q psy11350        434 IISSALKEQV-EPIPL---------LLDIQKLTFKFDSDLHAMV  467 (471)
Q Consensus       434 ~~~~~~~~~~-~~~~~---------~~~~~~l~fs~dg~~lA~~  467 (471)
                      ++........ ..++.         ...+..++|+|||+.+.+.
T Consensus       453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence            2222222212 12111         2245678999999988865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.1e-24  Score=227.90  Aligned_cols=307  Identities=13%  Similarity=0.039  Sum_probs=206.2

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCC---CEEEEEEeeCCCCCCccEEEEEeCC---------C
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDC---NVGAIEFHPLPSEGAVCSLASCAQD---------G  221 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~~~~~l~s~~~d---------g  221 (471)
                      .+.+++|+|||+++++ +.||.|++||+.+++....+..|..   .|.+++|+|++.     +|++++.+         +
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~-----~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-----YALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-----EEEEEESCCCCSSSCCCS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC-----EEEEEecCccceeeccee
Confidence            4667899999998877 6799999999999998888877765   499999999998     68888764         7


Q ss_pred             cEEEEeCCCCcceeeecCCC--CcceEEEEECCCCCEEEEEeCCCeEEeccc----cccc-cCCCC--------------
Q psy11350        222 SVKLWSLDKDTPLANLEGHE--PFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANL-EGHEP--------------  280 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~-~~~~~--------------  280 (471)
                      .|.+||+.+++. ..+....  ...+..++|+|||+.|++++.. .+.++..    ...+ ..+..              
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~-~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETT-EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECC-eEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            888999988876 3332221  1247889999999999999874 4333221    1111 11111              


Q ss_pred             ---cceEEEEECCCCCEEEEEecCC----------------------------------eEEEEECCCCcEEEEeeCC--
Q psy11350        281 ---FRVSRIKFHPSGRFLGTCCWDH----------------------------------SWRLWDLNQGQEVLHQEGH--  321 (471)
Q Consensus       281 ---~~v~~l~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~--  321 (471)
                         ..+.+++|+|||++|++++.++                                  .|++||+.+++....+..+  
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence               1237899999999999987653                                  7999999988765555544  


Q ss_pred             ----CCCeEEEEEeCCCCEEEEEeC----CCeEEEEeCCCCeeEEEecc-cCcCE----EEEEEcCCCCEEEE--EeCCC
Q psy11350        322 ----GKPVYCMSFQGDGSVVATGGL----DAFGRVWDLRTGRCIMFLEG-HLKSV----FSVDFSPDGYHLAT--GSEDN  386 (471)
Q Consensus       322 ----~~~v~~~~~s~d~~~l~t~~~----dg~i~iwd~~~~~~~~~~~~-h~~~v----~~~~~sp~~~~l~s--~s~dg  386 (471)
                          ...+.+++|+|||++|++.+.    +..|++||+.++++...+.. +...+    ..++|+|||+.|+.  +..++
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence                567899999999998877643    35799999999987766543 33333    37899999997764  45667


Q ss_pred             ------cEEEEE-CCCccc--hheecccCCCccceeeccccceeeeecccCC--Ccccccchhhhc--cccccee----e
Q psy11350        387 ------AVKIWD-LRKRRL--LKWCTQLLPNSIGVTSLLTDLYIDVLESLNP--GIGNIISSALKE--QVEPIPL----L  449 (471)
Q Consensus       387 ------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~----~  449 (471)
                            .|.+|| ...+..  ...+............++.|....++.....  ....++......  ....+..    .
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  409 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN  409 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred             CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence                  577777 344441  4444322112222345666655544333332  333333322211  1222221    2


Q ss_pred             ecccceeeeecCCeEEEee
Q psy11350        450 LDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       450 ~~~~~l~fs~dg~~lA~~~  468 (471)
                      ..+..++|||||+.||+..
T Consensus       410 ~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          410 CTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             CCCCEEEECTTSSEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEEc
Confidence            3467899999999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=8.2e-23  Score=199.09  Aligned_cols=220  Identities=15%  Similarity=0.096  Sum_probs=175.4

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEE-EEeCCC
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSG---LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLA-SCAQDG  221 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~-s~~~dg  221 (471)
                      ..+.+|...|.+++|||||++|++++.++   .|++||+.+++.. .+..|...+.+++|+|++.     .|+ +++.++
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~-----~la~~~~~~g  245 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS-----KLAFALSKTG  245 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS-----EEEEEECTTS
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC-----EEEEEEecCC
Confidence            45567999999999999999999999875   9999999998875 5677888999999999998     465 666666


Q ss_pred             c--EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-Ce--EEe---ccc-cccccCCCCcceEEEEECCCC
Q psy11350        222 S--VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HS--WRL---DTP-LANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       222 ~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~--~~~---~~~-~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      .  |.+||+.+++. ..+..+.. .+.+++|+|+|++|++++.+ +.  +.+   ... ...+..+ ...+.+++|+|+|
T Consensus       246 ~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~spdG  322 (415)
T 2hqs_A          246 SLNLYVMDLASGQI-RQVTDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDG  322 (415)
T ss_dssp             SCEEEEEETTTCCE-EECCCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEEEEECTTS
T ss_pred             CceEEEEECCCCCE-EeCcCCCC-cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC-CCcccCeEECCCC
Confidence            5  99999988765 44555543 79999999999999988864 43  222   221 2223333 4578899999999


Q ss_pred             CEEEEEecC---CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCeeEEEecccCcC
Q psy11350        293 RFLGTCCWD---HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA---FGRVWDLRTGRCIMFLEGHLKS  366 (471)
Q Consensus       293 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~h~~~  366 (471)
                      ++|++++.+   +.|++||+.+++.. .+..+. .+.+++|+|||++|++++.++   .|++||+. +.....+.+|.+.
T Consensus       323 ~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~  399 (415)
T 2hqs_A          323 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ  399 (415)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE
T ss_pred             CEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC
Confidence            999988865   58999999988764 455554 899999999999999988777   79999986 5567788899999


Q ss_pred             EEEEEEcCCCC
Q psy11350        367 VFSVDFSPDGY  377 (471)
Q Consensus       367 v~~~~~sp~~~  377 (471)
                      |.+++|+|...
T Consensus       400 v~~~~~~~~~~  410 (415)
T 2hqs_A          400 VKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEECCCCC
T ss_pred             CcCCccccccc
Confidence            99999999643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.6e-22  Score=191.39  Aligned_cols=241  Identities=13%  Similarity=0.123  Sum_probs=174.8

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCC-CcEEEEeCC--CCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCCc
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWS-GLCKLWTVP--ECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDGS  222 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~d-g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~  222 (471)
                      ..|...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|++.     +|++++ .++.
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~-----~l~~~~~~~~~  107 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQ-----FVFVGSYNAGN  107 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSS-----EEEEEETTTTE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCC-----EEEEEecCCCe
Confidence            4577889999999999999988876 999999997  554  344555444 788999999998     465555 5889


Q ss_pred             EEEEeCC---CCcceeeecCCCCcceEEEEECCCCCEEEEEe-CCCeEEeccccc----------cccCCCCcceEEEEE
Q psy11350        223 VKLWSLD---KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTPLA----------NLEGHEPFRVSRIKF  288 (471)
Q Consensus       223 i~iwd~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~~----------~~~~~~~~~v~~l~~  288 (471)
                      |.+||+.   +......+....  .+.+++|+|+|+++++++ .++.+.++....          ....+....+..++|
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLD--GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCT--TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             EEEEECCCCccccccccccCCC--CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence            9999994   333444444433  588999999999888887 777755533211          222233446889999


Q ss_pred             CCCCCEEEEEe-cCCeEEEEECCC--CcE--EEEee----CC--CCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCC--C-
Q psy11350        289 HPSGRFLGTCC-WDHSWRLWDLNQ--GQE--VLHQE----GH--GKPVYCMSFQGDGSVVAT-GGLDAFGRVWDLR--T-  353 (471)
Q Consensus       289 ~~~~~~l~~~~-~dg~i~iwd~~~--~~~--~~~~~----~~--~~~v~~~~~s~d~~~l~t-~~~dg~i~iwd~~--~-  353 (471)
                      +|+++++++++ .++.|.+||+..  ++.  .....    ++  ...+.+++|+|+|++|++ +..++.|.+||+.  + 
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence            99999776655 789999999953  432  22222    11  235678999999987774 4578999999998  3 


Q ss_pred             -CeeEEEecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCccc
Q psy11350        354 -GRCIMFLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDL--RKRRL  398 (471)
Q Consensus       354 -~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~--~~~~~  398 (471)
                       .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++  .+++.
T Consensus       266 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          266 VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence             345555554544 88999999999888887 6799999954  45543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=3e-23  Score=191.71  Aligned_cols=230  Identities=15%  Similarity=0.124  Sum_probs=178.3

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceEEEeecC-CCCEEEEEEeeCCCCCCccEEEEEe--CCCc
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE-CELVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASCA--QDGS  222 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~--~dg~  222 (471)
                      .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++....+..| ...+.+++|+|++.     +|++++  .++.
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-----~l~~~~~~~~~~  109 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA-----LYAISDKVEFGK  109 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS-----EEEEEECTTTSS
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC-----EEEEEEeCCCCc
Confidence            3456889999999999999999988 88999999999 8877777666 36788999999998     688887  3345


Q ss_pred             EEEEe--CCCCcceeeecCCCCcceEEEEECCCCCEEE-EEeCCCeEEecc------ccccccCCCCcceEEEEECCCCC
Q psy11350        223 VKLWS--LDKDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHSWRLDT------PLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       223 i~iwd--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~-~~~~d~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      ..||.  +.++. ...+..+.  .+..++|+|++++++ ++..++.+.++.      ....+..+ ...+.+++|+|+++
T Consensus       110 ~~l~~~~~~~~~-~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          110 SAIYLLPSTGGT-PRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG-EGRNDGPDYSPDGR  185 (297)
T ss_dssp             CEEEEEETTCCC-CEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS-SSCEEEEEECTTSS
T ss_pred             ceEEEEECCCCc-eEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC-CCccccceECCCCC
Confidence            55554  44444 33343333  488899999999887 677777644432      12223333 45799999999999


Q ss_pred             EEEEEe-cCCeEEEEECC-CCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC-----------CeEEEEeCCCCee--EE
Q psy11350        294 FLGTCC-WDHSWRLWDLN-QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD-----------AFGRVWDLRTGRC--IM  358 (471)
Q Consensus       294 ~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d-----------g~i~iwd~~~~~~--~~  358 (471)
                      +|++++ .++.+++|++. .+..+..+..|...+.+++|+|+|++|++++.+           +.|++||+.+++.  +.
T Consensus       186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            888776 58999999886 456677777888889999999999999888765           5699999988865  44


Q ss_pred             EecccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        359 FLEGHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       359 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      .+.+|...+.+++|+|++++|++++.+.
T Consensus       266 ~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          266 DLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCCCCcccccceECCCCCEEEEEEecc
Confidence            4557888999999999999998887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=3.3e-22  Score=188.60  Aligned_cols=239  Identities=11%  Similarity=0.032  Sum_probs=177.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCce-EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC---cEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASW-SGLCKLWTVPECEL-VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG---SVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~-dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~  224 (471)
                      .+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+..+..+++|+|++.     +++++..++   .|.
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-----~l~~~~~~~~~~~i~  111 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ-----FAVTVTGLNHPFNMQ  111 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS-----EEEECCCSSSSCEEE
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC-----EEEEecCCCCcccEE
Confidence            445566 9999999998777665 88999999999987 777777777776699999998     577544443   899


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEe-CCCe-EEecccc---------ccccCCCCcceEEEEECCCCC
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS-WRLDTPL---------ANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~-~~~~~~~---------~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      +||+.+++.+..+....  ...+++|+|+|+++++++ .++. +.++...         ...... ...+..++|+|+|+
T Consensus       112 v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~spdg~  188 (331)
T 3u4y_A          112 SYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG-GTRPFNITFTPDGN  188 (331)
T ss_dssp             EEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS-SSSEEEEEECTTSS
T ss_pred             EEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC-CCCccceEECCCCC
Confidence            99999998887776544  578999999998666554 4354 4432210         111111 33578999999999


Q ss_pred             EEEEEe-cCCeEEEEECCCCcE---EEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCee--EEEeccc---
Q psy11350        294 FLGTCC-WDHSWRLWDLNQGQE---VLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRC--IMFLEGH---  363 (471)
Q Consensus       294 ~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~--~~~~~~h---  363 (471)
                      ++++++ .++.|.+||+.+++.   +..+..+ ..+..++|+|||++|++++ .++.|.+||+.+++.  +..+..+   
T Consensus       189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          189 FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred             EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence            766555 689999999999887   7666643 5667899999999776554 578899999999876  4433322   


Q ss_pred             -Cc---CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCccc
Q psy11350        364 -LK---SVFSVDFSPDGYHLATGS-EDNAVKIWDLRKRRL  398 (471)
Q Consensus       364 -~~---~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~  398 (471)
                       ..   ....++|+|+|++|++++ .++.|.+||+.....
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence             22   235689999999886655 467999999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=5.8e-23  Score=209.41  Aligned_cols=233  Identities=13%  Similarity=0.010  Sum_probs=174.0

Q ss_pred             CcCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeC---CCcEEEE
Q psy11350        152 TRPISYCSFSPDSQHVATASW-SGLCKLWTVPECELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQ---DGSVKLW  226 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iw  226 (471)
                      ..+|.+++|+|||++||+++. +|++.||++.+++..+ +..|. ..+..++|+|+ .     ++++++.   +....+|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~-----~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-R-----VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-E-----EEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-e-----EEEEeccCCCCcceEEE
Confidence            347999999999999998886 9999999996665544 44444 68999999998 4     6777765   4556676


Q ss_pred             eCCC--CcceeeecCCCCcceEEEEECCCCCE--EEEEeCCCeE--Eecccc-ccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        227 SLDK--DTPLANLEGHEPFRVSRIKFHPSGRF--LGTCCWDHSW--RLDTPL-ANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       227 d~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~--i~~~~~d~~~--~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      .+..  ......+....  .+...+|+|+|+.  +++++.++.+  ++.... ..+..+ .  ..+++|+|||++|++++
T Consensus        94 ~~~~~~~g~~~~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~--~~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-P--GFGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EEETTSTTCCEECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-S--SCEEEEEEETTEEEEEE
T ss_pred             EEeccCCCccccccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-C--CceEEECCCCCEEEEEE
Confidence            5533  22222333333  3446688888764  4444455543  322211 122222 1  17899999999999888


Q ss_pred             cC----CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCeeEEEecccCcCEEEEE--
Q psy11350        300 WD----HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA--FGRVWDLRTGRCIMFLEGHLKSVFSVD--  371 (471)
Q Consensus       300 ~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~--  371 (471)
                      .+    +.|++||+.+++.. .+..|...+..++|+|||++|+++..++  .|++||+.+++.. .+.+|...+..++  
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             EcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence            77    78999999988754 6678888999999999999999888888  8999999999887 7777877777777  


Q ss_pred             ------EcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        372 ------FSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       372 ------~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                            |+|||.++++++.||++++|++  ++.+.
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence                  9999999999999999999999  66554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=6.7e-22  Score=214.85  Aligned_cols=230  Identities=11%  Similarity=0.012  Sum_probs=186.3

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-----------CCCCEEEEEEe-eCCCCCCccEEEEEeCCC
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-----------HDCNVGAIEFH-PLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~l~~~-~~~~~~~~~~l~s~~~dg  221 (471)
                      .+.+++|+|||++|+++. ++.|++|++... .+..+..           |...+.+++|+ |++.     .|++++ ++
T Consensus       246 ~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-----~la~~~-~~  317 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-----LIAFVS-RG  317 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-----CEEEEE-TT
T ss_pred             CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCC-----EEEEEE-cC
Confidence            466789999999999886 899999999544 3445554           33468899999 9998     477766 88


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEE-eccc----cccccCCCCcceEEEEECCCCCEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR-LDTP----LANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~-~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      .|.+|++.++.... +..+....+..++|+ +|+.+++++.+..+. ++..    ...+..+ ...+..++|+|+|++|+
T Consensus       318 ~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~-~~~~~~~~~SpDG~~la  394 (1045)
T 1k32_A          318 QAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-LGNVFAMGVDRNGKFAV  394 (1045)
T ss_dssp             EEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCC-CCSEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCC-ccceeeeEECCCCCEEE
Confidence            99999998776443 444444478999999 999999988866544 4321    2233333 56799999999999999


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC----------eEEEEeCCCCeeEEEecccCcC
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA----------FGRVWDLRTGRCIMFLEGHLKS  366 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg----------~i~iwd~~~~~~~~~~~~h~~~  366 (471)
                      +++.++.|++||+.+++......+|...+.+++|+|||++|++++.++          .|++||+.+++ +..+..|...
T Consensus       395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~  473 (1045)
T 1k32_A          395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH  473 (1045)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB
T ss_pred             EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc
Confidence            999999999999999988877778999999999999999998887654          89999999887 6677888888


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        367 VFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       367 v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      +.+++|+|||++|++++.++...+|+...
T Consensus       474 ~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          474 DYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             cCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            99999999999999999988888887653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.8e-22  Score=210.68  Aligned_cols=300  Identities=10%  Similarity=0.057  Sum_probs=196.0

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE-EEeecCC-----------------CCEEEEEEeeCCCCCCccEEEE
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELV-QTFRGHD-----------------CNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      +..+.|+  |..+++++.+| | +||+.+++.+ ..+..|.                 ..|.+++|+|+ .     .++.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~-----~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G-----LVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-T-----EEEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-C-----eEEE
Confidence            4446788  66777777787 8 9999998873 3333332                 56999999999 5     3444


Q ss_pred             EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---------ccccCCCCcc-----
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---------ANLEGHEPFR-----  282 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---------~~~~~~~~~~-----  282 (471)
                      + .++.|.+||+.+++....... .. .+.+++|+|||++|+++ .++.+.++...         ..+.......     
T Consensus        98 ~-~~~~i~~~d~~~~~~~~l~~~-~~-~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A           98 F-TQGGLVGFDMLARKVTYLFDT-NE-ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             E-ETTEEEEEETTTTEEEEEECC-TT-CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             E-ECCEEEEEECCCCceEEccCC-cc-cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            4 469999999988866544433 22 67889999999999986 45664443221         1111111111     


Q ss_pred             ---------eEEEEECCCCCEEEEEe---------------------------------cCCeEEEEECCCCcEEEEee-
Q psy11350        283 ---------VSRIKFHPSGRFLGTCC---------------------------------WDHSWRLWDLNQGQEVLHQE-  319 (471)
Q Consensus       283 ---------v~~l~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~-  319 (471)
                               +.++.|+|||++|++++                                 .+..|++||+.+++...... 
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence                     47899999999999987                                 44689999999887654442 


Q ss_pred             -CCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEec-c-cCc---CEEEEEEcC--CCCEEEEEeCCC
Q psy11350        320 -GHGKPVYCMSFQGDGSVVATGGLDA-----FGRVWDLRTGRCIMFLE-G-HLK---SVFSVDFSP--DGYHLATGSEDN  386 (471)
Q Consensus       320 -~~~~~v~~~~~s~d~~~l~t~~~dg-----~i~iwd~~~~~~~~~~~-~-h~~---~v~~~~~sp--~~~~l~s~s~dg  386 (471)
                       .|...+.+++|+|||++|++++.++     .|++||+.+++....+. . +..   .+.+++|+|  ||+++++++.||
T Consensus       254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence             4677899999999999999987775     89999999984333332 1 222   246789999  999999999999


Q ss_pred             cEEEEECC-CccchheecccCCCccceeeccccceeeeecccCCC--cccccch-hhhcccccceeeecccceeeeecCC
Q psy11350        387 AVKIWDLR-KRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPG--IGNIISS-ALKEQVEPIPLLLDIQKLTFKFDSD  462 (471)
Q Consensus       387 ~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~fs~dg~  462 (471)
                      .++||+++ +++.+..+.........+..++.+....++.....+  ...++.. ........+.....+..++|||||+
T Consensus       334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGS  413 (706)
T ss_dssp             SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSS
T ss_pred             ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCC
Confidence            99999886 566555554332222222455556544433333322  1222221 1112233444444567899999999


Q ss_pred             eEEEee
Q psy11350        463 LHAMVL  468 (471)
Q Consensus       463 ~lA~~~  468 (471)
                      +++...
T Consensus       414 ~l~~~~  419 (706)
T 2z3z_A          414 AIIDIF  419 (706)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.3e-21  Score=184.52  Aligned_cols=231  Identities=10%  Similarity=0.088  Sum_probs=169.7

Q ss_pred             EEEecCCCE-EEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCCcEEEEeCCCCcc-e
Q psy11350        158 CSFSPDSQH-VATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDGSVKLWSLDKDTP-L  234 (471)
Q Consensus       158 ~~~s~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~  234 (471)
                      ..|.+++.+ +++++.++.|.+||+.+++....+..+...+ +++|+|++.     .+++++ .++.|.+||+.+++. .
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~-----~l~~~~~~~~~i~~~d~~~~~~~~   76 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCS-----NVVVTSDFCQTLVQIETQLEPPKV   76 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSC-----EEEEEESTTCEEEEEECSSSSCEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCC-----EEEEEeCCCCeEEEEECCCCceeE
Confidence            346666666 5677788999999999999988888776777 999999998     455554 489999999998887 5


Q ss_pred             eeecCCCCcceEEEEECCCCCEEEEEeCCC---eEEeccc-----cccccCCCCcceEEEEECCCCCEEEEE-ecCCe-E
Q psy11350        235 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDH---SWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHS-W  304 (471)
Q Consensus       235 ~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~---~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~-i  304 (471)
                      ..+..+.. ...+++|+|+|++++++..++   .+.++..     ...+..  .....+++|+|+|++++++ ..++. |
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           77 VAIQEGQS-SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EEEEECSS-CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             EecccCCC-CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCCCceE
Confidence            55554443 444499999999999655552   5554322     122222  2357899999999866655 45578 9


Q ss_pred             EEEECCCCcEE----EEeeCCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCee---EEEecccCcCEEEEEEcCCC
Q psy11350        305 RLWDLNQGQEV----LHQEGHGKPVYCMSFQGDGSVVAT-GGLDAFGRVWDLRTGRC---IMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       305 ~iwd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~t-~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~sp~~  376 (471)
                      .+|++.....+    ............++|+|+|+++++ +..++.|++||+.+++.   +..+..+ ..+..++|+|+|
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg  232 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDG  232 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTS
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCC
Confidence            99998764333    222244566899999999996554 45689999999999887   7777643 677899999999


Q ss_pred             CEEEEEe-CCCcEEEEECCCccc
Q psy11350        377 YHLATGS-EDNAVKIWDLRKRRL  398 (471)
Q Consensus       377 ~~l~s~s-~dg~i~iwd~~~~~~  398 (471)
                      ++|+.++ .++.|.+||+.+++.
T Consensus       233 ~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          233 STVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SEEEEECSSEEEEEEEETTTTEE
T ss_pred             CEEEEEEcCCCEEEEEECCCCce
Confidence            9776654 578899999999887

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=6.2e-22  Score=187.88  Aligned_cols=239  Identities=11%  Similarity=0.026  Sum_probs=182.9

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      .+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++..    +++++..++.|.+||+.+++.+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT----AYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE----EEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCE----EEEEeCCCCcEEEEeCCCCcEEE
Confidence            34678889999999999999999999999888887543 25679999999872    44566678999999999988777


Q ss_pred             eecCCC-----CcceEEEEECCCCCEEEEEeCC------------CeEEeccccc-----cc-cCCCCcceEEEEECCCC
Q psy11350        236 NLEGHE-----PFRVSRIKFHPSGRFLGTCCWD------------HSWRLDTPLA-----NL-EGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       236 ~~~~~~-----~~~v~~~~~s~~~~~i~~~~~d------------~~~~~~~~~~-----~~-~~~~~~~v~~l~~~~~~  292 (471)
                      .+....     ...+..++|+|+|+++++++.+            +.+.++....     .+ .......+.+++|+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            665432     2247889999999999998865            5544432211     11 11123358889999999


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCC--------------------------------------------------
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHG--------------------------------------------------  322 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------------------------  322 (471)
                      + +++++  +.|.+||+.+++.+..+..+.                                                  
T Consensus       160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 55554  449999999888766554321                                                  


Q ss_pred             ------------------CCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        323 ------------------KPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       323 ------------------~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                                        ..+.+++|+| ++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence                              1345677889 99999888  88999999999998877763 34578999999999888888


Q ss_pred             CCCcEEEEECCCccchheeccc
Q psy11350        384 EDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .++.|.+||+.+++.+..+...
T Consensus       314 ~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          314 TFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             BSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEeccccceeeeeecC
Confidence            8999999999999988877543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.6e-21  Score=184.00  Aligned_cols=230  Identities=13%  Similarity=0.075  Sum_probs=178.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCC--CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDC--NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      ++|++++.++.|.+||+.+++.+..+.....  .+..++|+|++..    ++++++.++.|.+||+.+++.+..+.....
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI----AYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE----EEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE----EEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            4789999999999999999998888764332  4789999999873    456667789999999999988776654321


Q ss_pred             ----cceEEEEECCCCCEEEEEe------------CCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        243 ----FRVSRIKFHPSGRFLGTCC------------WDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       243 ----~~v~~~~~s~~~~~i~~~~------------~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                          ..+..++|+|+|++++++.            .++.+.++..     ...+..  ...+.+++|+|++++|+++  +
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--G  153 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--S
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--C
Confidence                1467899999999998886            4566544322     112221  2357789999999988888  6


Q ss_pred             CeEEEEECCCCcEEEEeeCCC-----------------------------------------------------------
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHG-----------------------------------------------------------  322 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~-----------------------------------------------------------  322 (471)
                      +.|.+||+.+++.+..+..+.                                                           
T Consensus       154 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  233 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence            889999998887665443221                                                           


Q ss_pred             -------CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        323 -------KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       323 -------~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                             ..+.+++|+|||++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||+.+
T Consensus       234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence                   234568999999999888  799999999999888777643 5678999999999999999999999999999


Q ss_pred             ccchheeccc
Q psy11350        396 RRLLKWCTQL  405 (471)
Q Consensus       396 ~~~~~~~~~~  405 (471)
                      ++.+..+...
T Consensus       311 ~~~~~~~~~~  320 (337)
T 1pby_B          311 LEKKGQVDLP  320 (337)
T ss_dssp             CCEEEEEECG
T ss_pred             CcEEEEEEcC
Confidence            9988877544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=8.1e-22  Score=214.18  Aligned_cols=240  Identities=11%  Similarity=0.095  Sum_probs=188.5

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE-CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ..+.+|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..|. .+..++|+|++.     .|+.+ .++.|.
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~-----~la~~-~~~~i~  268 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR-----RILFS-KGGSIY  268 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS-----CEEEE-ETTEEE
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC-----EEEEE-eCCEEE
Confidence            344789999999999998 6677888889999998653 44555666665 456789999998     46666 589999


Q ss_pred             EEeCCCCcceeeecCCC----------CcceEEEEEC-CCCCEEEEEeCCCeEEecc----ccccccCCCCcceEEEEEC
Q psy11350        225 LWSLDKDTPLANLEGHE----------PFRVSRIKFH-PSGRFLGTCCWDHSWRLDT----PLANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~----------~~~v~~~~~s-~~~~~i~~~~~d~~~~~~~----~~~~~~~~~~~~v~~l~~~  289 (471)
                      +|++.. ..+..+..+.          ...+.+++|+ |+|+++++++ ++.+.++.    ....+..+....+..++|+
T Consensus       269 ~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          269 IFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             EECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS
T ss_pred             EecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc
Confidence            999944 3344444421          1258899999 9999999988 44433321    1223344423278999999


Q ss_pred             CCCCEEEEEecCCeEE-EEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEE
Q psy11350        290 PSGRFLGTCCWDHSWR-LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF  368 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  368 (471)
                       +|+.|++++.++.+. +||+.+++... +.+|...+.+++|+|||++|++++.++.|++||+.+++....+.+|...+.
T Consensus       347 -dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          347 -TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence             999999999888899 99998876544 447888999999999999999999999999999999988877778999999


Q ss_pred             EEEEcCCCCEEEEEeCCC----------cEEEEECCCcc
Q psy11350        369 SVDFSPDGYHLATGSEDN----------AVKIWDLRKRR  397 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg----------~i~iwd~~~~~  397 (471)
                      +++|+|||++|++++.++          .|++||+.+++
T Consensus       425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999999999999887654          89999999877

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=5.3e-21  Score=180.87  Aligned_cols=287  Identities=13%  Similarity=0.104  Sum_probs=183.1

Q ss_pred             CEEE-EEeCCCcEEEEeCC-CCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC-CcEEEEeCC--CCcc--ee
Q psy11350        165 QHVA-TASWSGLCKLWTVP-ECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-GSVKLWSLD--KDTP--LA  235 (471)
Q Consensus       165 ~~l~-tg~~dg~i~iwd~~-~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~~--~~  235 (471)
                      ++|+ +++.++.|++|++. +++  .+.. ..|...+.+++|+|++.     +|++++.+ +.|.+|++.  ++..  +.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~-----~l~~~~~~~~~v~~~~~~~~~~~~~~~~   78 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKR-----YLYVGVRPEFRVLAYRIAPDDGALTFAA   78 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSS-----EEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCC-----EEEEeecCCCeEEEEEecCCCCceeecc
Confidence            3444 44779999999985 342  3333 34677889999999998     67777776 999999987  5543  33


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeC-CCeEEeccc--------cccccCCCCcceEEEEECCCCCEEEEEe-cCCeEE
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDTP--------LANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWR  305 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~  305 (471)
                      .+....  .+..++|+|+|+++++++. ++.+.++..        ...+..  ...+.+++|+|+++++++++ .++.|.
T Consensus        79 ~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           79 ESALPG--SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEECSS--CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             ccccCC--CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCCCCEEE
Confidence            444333  6889999999998877765 665544332        111222  23588899999999888887 899999


Q ss_pred             EEECCC-CcEEE----EeeC-CCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCC--Cee--EEEec----cc--CcCEE
Q psy11350        306 LWDLNQ-GQEVL----HQEG-HGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRT--GRC--IMFLE----GH--LKSVF  368 (471)
Q Consensus       306 iwd~~~-~~~~~----~~~~-~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~--~~~--~~~~~----~h--~~~v~  368 (471)
                      +||+.+ ++...    .... ....+.+++|+|+++++++++ .++.|.+|++..  ++.  ...+.    ++  ...+.
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            999987 54432    2222 345788999999999766554 889999999953  432  22222    11  23577


Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEECC--C--ccchheecccCCCccceeeccccceeeeecccCCCcccccch--h--h
Q psy11350        369 SVDFSPDGYHLA-TGSEDNAVKIWDLR--K--RRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISS--A--L  439 (471)
Q Consensus       369 ~~~~sp~~~~l~-s~s~dg~i~iwd~~--~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~--~  439 (471)
                      +++|+|+|++|+ ++..++.|.+||+.  +  .+.+..+...  .....+++..+....+......+...++.-  .  .
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            899999998877 45578999999998  2  2333333322  123334445555443333333333333311  1  1


Q ss_pred             hcccccceeeecccceeeeecCCe
Q psy11350        440 KEQVEPIPLLLDIQKLTFKFDSDL  463 (471)
Q Consensus       440 ~~~~~~~~~~~~~~~l~fs~dg~~  463 (471)
                      ...+..++.......++|.|+.+.
T Consensus       313 ~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          313 LHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEC--
T ss_pred             eeEccccccCCCCeeEEEEcccCC
Confidence            122333344345677888876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=3.2e-21  Score=183.27  Aligned_cols=246  Identities=10%  Similarity=0.098  Sum_probs=172.6

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCCc
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASW---SGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDGS  222 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~  222 (471)
                      ..+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++.     +|++++ .++.
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~-----~l~~~~~~~~~  109 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ-----LVYSANYHKGT  109 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT-----EEEEEETTTTE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC-----EEEEEeCCCCE
Confidence            34556778899999999 655554   6899999997765  3444455677788999999998     577776 7899


Q ss_pred             EEEEeCCC-Cc--ceeeecCC--------CCcceEEEEECCCCCEEEEEeCCCeEEecccc-----c---cccCCCCcce
Q psy11350        223 VKLWSLDK-DT--PLANLEGH--------EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-----A---NLEGHEPFRV  283 (471)
Q Consensus       223 i~iwd~~~-~~--~~~~~~~~--------~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-----~---~~~~~~~~~v  283 (471)
                      |.+|++.. +.  .+..+...        ....+.+++|+|+|+.+++...++.+.++...     .   .+.......+
T Consensus       110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p  189 (347)
T 3hfq_A          110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP  189 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred             EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence            99999863 22  22333221        11248899999999955555556665443221     1   1122223357


Q ss_pred             EEEEECCCCCEEEEE-ecCCeEEEEECCC--CcE--EEEeeCCC------CCeEEEEEeCCCCEE-EEEeCCCeEEEEeC
Q psy11350        284 SRIKFHPSGRFLGTC-CWDHSWRLWDLNQ--GQE--VLHQEGHG------KPVYCMSFQGDGSVV-ATGGLDAFGRVWDL  351 (471)
Q Consensus       284 ~~l~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~--~~~~~~~~------~~v~~~~~s~d~~~l-~t~~~dg~i~iwd~  351 (471)
                      ..++|+|+|++++++ ..++.|.+|++..  ++.  +..+....      ..+..++|+|||++| +++..++.|.+|++
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            889999999976664 5678999999874  443  22332222      458899999999977 45566899999999


Q ss_pred             CC---CeeEEEecccCcCEEEEEEcCCCCEEEEEeCC-CcEEEE--ECCCccchh
Q psy11350        352 RT---GRCIMFLEGHLKSVFSVDFSPDGYHLATGSED-NAVKIW--DLRKRRLLK  400 (471)
Q Consensus       352 ~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-g~i~iw--d~~~~~~~~  400 (471)
                      ..   .+.+..+..+...+.+++|+|+|++|++++.+ +.|.+|  |..++++..
T Consensus       270 ~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          270 TADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            72   35566666666778999999999988888765 899999  555666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.7e-22  Score=197.61  Aligned_cols=212  Identities=12%  Similarity=0.061  Sum_probs=157.3

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC----------ceEEE-----eecCCCCEEEEEEeeCCCCCCccEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPEC----------ELVQT-----FRGHDCNVGAIEFHPLPSEGAVCSLA  215 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~----------~~~~~-----~~~h~~~v~~l~~~~~~~~~~~~~l~  215 (471)
                      +...++.+++++++.+|++++.+| ++||+....          ..+..     ...|...|.+++|+|++.     +|+
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-----~la  108 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-----TLS  108 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-----EEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-----EEE
Confidence            345688999999999999999888 888875311          11111     123567899999999998     677


Q ss_pred             ----EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCC
Q psy11350        216 ----SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       216 ----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~  291 (471)
                          +++.|+.|+|||+.++..... ....  .+                        .....+.+| ...|.+++|+|+
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~-~~~~--~~------------------------~~~~~~~~h-~~~V~~v~~~p~  160 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAK-QQKR--PF------------------------AYHKLLKDA-GGMVIDMKWNPT  160 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTC-SSCC--CS------------------------EEEECCCSG-GGSEEEEEECSS
T ss_pred             EEEeccCCCceEEEEEccccccCCc-CCcc--ee------------------------eeeeccCCC-CCceEEEEECCC
Confidence                788899999999865410000 0000  00                        001122333 457999999997


Q ss_pred             -CCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-------
Q psy11350        292 -GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-------  363 (471)
Q Consensus       292 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-------  363 (471)
                       +.+|++++.||+|++||++++..+....+|...|++++|+|+|++|++|+.||.|++||++ ++....+..|       
T Consensus       161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          161 VPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             CTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence             7899999999999999999987777778899999999999999999999999999999998 6555555443       


Q ss_pred             CcCEEEEEEcCCCCEEEEE-eCCCc------EEEEECCCcc
Q psy11350        364 LKSVFSVDFSPDGYHLATG-SEDNA------VKIWDLRKRR  397 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~-s~dg~------i~iwd~~~~~  397 (471)
                      ...|.+++|++++.++++. +.||.      +++|++++.+
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence            2389999999988777543 34433      8999998653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=2e-21  Score=203.80  Aligned_cols=242  Identities=12%  Similarity=0.096  Sum_probs=180.9

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ..|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|++.     .|+.++ ++.|.+||+.+
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~-----~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG-----FVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS-----EEEEEE-TTEEEEEETTT
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC-----EEEEEe-CCcEEEEecCC
Confidence            45788999999999999985 999999998873  4455677888999999999998     677776 57999999988


Q ss_pred             CcceeeecCCCCc---------------ceEEEEECCCCCEEEEEeCCC-------------------------------
Q psy11350        231 DTPLANLEGHEPF---------------RVSRIKFHPSGRFLGTCCWDH-------------------------------  264 (471)
Q Consensus       231 ~~~~~~~~~~~~~---------------~v~~~~~s~~~~~i~~~~~d~-------------------------------  264 (471)
                      ++.......+...               .+..+.|+|||++|++++.++                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            7765544433221               147899999999999987664                               


Q ss_pred             --eEEecc----cc-cccc-C-CCCcceEEEEECCCCCEEEEEec-----CCeEEEEECCCCcEEEEeeCCCC----CeE
Q psy11350        265 --SWRLDT----PL-ANLE-G-HEPFRVSRIKFHPSGRFLGTCCW-----DHSWRLWDLNQGQEVLHQEGHGK----PVY  326 (471)
Q Consensus       265 --~~~~~~----~~-~~~~-~-~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~----~v~  326 (471)
                        .+.++.    .. ..+. . .....+..++| |||++|++++.     +..|++||+.+++....+..+..    .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              222221    11 1111 1 12456899999 99999997764     56899999999987766655543    456


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCC-CCeeEEEecccCcCEEEE-EEcCCCCEEEE-EeCCC--cEEEEECCC-ccchh
Q psy11350        327 CMSFQGDGSVVATGGLDAFGRVWDLR-TGRCIMFLEGHLKSVFSV-DFSPDGYHLAT-GSEDN--AVKIWDLRK-RRLLK  400 (471)
Q Consensus       327 ~~~~s~d~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s-~s~dg--~i~iwd~~~-~~~~~  400 (471)
                      +++|+|||+++++++.+|.++||.+. .+. ...+..|...|..+ .|+|+|+.|+. ++.++  .++||++.. ++.+.
T Consensus       341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~  419 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ  419 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred             ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence            88999999999999999987777665 345 77788888889887 59999987754 45555  899999864 55444


Q ss_pred             eec
Q psy11350        401 WCT  403 (471)
Q Consensus       401 ~~~  403 (471)
                      .+.
T Consensus       420 ~l~  422 (741)
T 2ecf_A          420 RLS  422 (741)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=7.6e-22  Score=206.33  Aligned_cols=232  Identities=12%  Similarity=0.084  Sum_probs=167.2

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCC---CEEEEEEeeCCCCCCccEEEEEeC---------CCcEE
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDC---NVGAIEFHPLPSEGAVCSLASCAQ---------DGSVK  224 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~~~~~l~s~~~---------dg~i~  224 (471)
                      +++|+|||++++++ .|+.|++||+.+++....+.+|..   .+.+++|+|++.     .|++++.         ++.|+
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~-----~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ-----FVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS-----EEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC-----eEEEEecCceeEEeecceEEE
Confidence            66899999655554 699999999999998877766543   488999999998     6777765         78999


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc----ccc--cCCCC----------------cc
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL----ANL--EGHEP----------------FR  282 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~----~~~--~~~~~----------------~~  282 (471)
                      +||+.+++.+......  ..+..++|||||+.|+++. ++.+.++...    ..+  .++..                ..
T Consensus        94 ~~d~~~g~~~~~~~l~--~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           94 IYDLSNGEFVRGNELP--RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEETTTTEECCSSCCC--SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             EEECCCCccccceecC--cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            9999988763211111  2688899999999999986 4555443221    111  11111                11


Q ss_pred             eEEEEECCCCCEEEEEecCC----------------------------------eEEEEECCCCcEE---E-----EeeC
Q psy11350        283 VSRIKFHPSGRFLGTCCWDH----------------------------------SWRLWDLNQGQEV---L-----HQEG  320 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~~~~  320 (471)
                      ..+++|+|||++|++++.|.                                  .|++||+.+++..   .     .+.+
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence            24899999999999988652                                  7899999987642   1     1346


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCC----CeEEEEe----CCCCeeEEEe----cccCcCEE-----EEEEcCCCCEEEE--
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLD----AFGRVWD----LRTGRCIMFL----EGHLKSVF-----SVDFSPDGYHLAT--  381 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~d----g~i~iwd----~~~~~~~~~~----~~h~~~v~-----~~~~sp~~~~l~s--  381 (471)
                      |...+.+++|+||++++++....    ..|++||    +.++++...+    .+|...+.     .+.|+|||+.|+.  
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  330 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF  330 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence            78889999999998877774432    2488999    8887765555    36766676     8899999986544  


Q ss_pred             EeCCC--cEEEEECCCcc
Q psy11350        382 GSEDN--AVKIWDLRKRR  397 (471)
Q Consensus       382 ~s~dg--~i~iwd~~~~~  397 (471)
                      +..+|  .|.+||+..++
T Consensus       331 ~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          331 SDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             ECTTSCEEEEEESSCSTT
T ss_pred             EccCCceEEEEEECCCCc
Confidence            44555  47777887766

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=1.3e-19  Score=173.11  Aligned_cols=242  Identities=12%  Similarity=0.119  Sum_probs=168.4

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCC----CcEEEEeCCC--Cce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWS----GLCKLWTVPE--CEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QDG  221 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~d----g~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg  221 (471)
                      |...+..++|+|||++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++.     .|++++ .++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-----~l~~~~~~~~  120 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-----NIVTANYSGG  120 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-----EEEEEETTTT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-----EEEEEECCCC
Confidence            66778889999999999999875    7999998864  433  3344445566777887  555     455554 688


Q ss_pred             cEEEEeCCCCcceeee------cCC-------CCcceEEEEECCCCCEEEEEeC-CCeEEec---ccc------------
Q psy11350        222 SVKLWSLDKDTPLANL------EGH-------EPFRVSRIKFHPSGRFLGTCCW-DHSWRLD---TPL------------  272 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~------~~~-------~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~---~~~------------  272 (471)
                      .|.+|++.....+..+      .+.       ....+.+++|+|+|+++++++. ++.+.++   ...            
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            9999999754433221      111       1124588999999997776664 5554443   111            


Q ss_pred             --ccccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCcE--EEEe---eCCCCCeEEEEEeCCCCEEEEEeCC-
Q psy11350        273 --ANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQE--VLHQ---EGHGKPVYCMSFQGDGSVVATGGLD-  343 (471)
Q Consensus       273 --~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~---~~~~~~v~~~~~s~d~~~l~t~~~d-  343 (471)
                        ..........+..++|+|+|+++++++ .++.|.+||+.+++.  +..+   ..+.....+++|+|||++|+++..+ 
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence              111222244578999999999888877 689999999987754  2222   2334557899999999988776654 


Q ss_pred             -CeEEEEeCC--CCe--eEEEecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEE--CCCccchh
Q psy11350        344 -AFGRVWDLR--TGR--CIMFLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWD--LRKRRLLK  400 (471)
Q Consensus       344 -g~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd--~~~~~~~~  400 (471)
                       +.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|+  ..++++..
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence             899999986  444  4444444 45788999999999888887 678999964  45666544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=2.3e-20  Score=194.64  Aligned_cols=238  Identities=14%  Similarity=0.136  Sum_probs=174.8

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      +...|.+++|||| .+++.+. ++.|++||+.+++... +..+...+.+++|+|++.     .|++ +.++.|.+||+.+
T Consensus        80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~-----~la~-~~~~~i~v~~~~~  150 (706)
T 2z3z_A           80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGD-----RVAY-VRNHNLYIARGGK  150 (706)
T ss_dssp             --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSS-----EEEE-EETTEEEEEECBC
T ss_pred             cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCC-----EEEE-EECCeEEEEecCc
Confidence            3467999999999 6666665 6999999998876654 445677788999999998     5777 4689999999988


Q ss_pred             -----CcceeeecCCCCc-------------ceEEEEECCCCCEEEEEeCC-----------------------------
Q psy11350        231 -----DTPLANLEGHEPF-------------RVSRIKFHPSGRFLGTCCWD-----------------------------  263 (471)
Q Consensus       231 -----~~~~~~~~~~~~~-------------~v~~~~~s~~~~~i~~~~~d-----------------------------  263 (471)
                           ++.......+...             .+.++.|+|||++|++++.|                             
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 7765544433321             14889999999999998732                             


Q ss_pred             ----CeEEecc---cc-cccc-C-CCCcceEEEEECCCCCEEEEEecCC-----eEEEEECCCCcEEEEee--CCC---C
Q psy11350        264 ----HSWRLDT---PL-ANLE-G-HEPFRVSRIKFHPSGRFLGTCCWDH-----SWRLWDLNQGQEVLHQE--GHG---K  323 (471)
Q Consensus       264 ----~~~~~~~---~~-~~~~-~-~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~---~  323 (471)
                          ..+.++.   .. ..+. . .....+.+++|+|+|++|++++.++     .|++||+.+++....+.  .+.   .
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence                2233321   11 1111 1 2245689999999999999988775     89999999984333332  222   2


Q ss_pred             CeEEEEEeC--CCCEEEEEeCCCeEEEEeCC-CCeeEEEecccCcCEEE-EEEcCCCCEEEEEeC-CC----cEEEEECC
Q psy11350        324 PVYCMSFQG--DGSVVATGGLDAFGRVWDLR-TGRCIMFLEGHLKSVFS-VDFSPDGYHLATGSE-DN----AVKIWDLR  394 (471)
Q Consensus       324 ~v~~~~~s~--d~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-~~~sp~~~~l~s~s~-dg----~i~iwd~~  394 (471)
                      .+.+++|+|  ||+++++++.++.++||.+. ++..+..+..|...+.. ++|+|+|+.|+.++. ++    .|..||+.
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            346789999  99999999999999999876 67777888888888887 799999988766554 44    67777877


Q ss_pred             Ccc
Q psy11350        395 KRR  397 (471)
Q Consensus       395 ~~~  397 (471)
                      +++
T Consensus       391 ~~~  393 (706)
T 2z3z_A          391 GGK  393 (706)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=2.9e-20  Score=194.38  Aligned_cols=270  Identities=12%  Similarity=0.030  Sum_probs=181.6

Q ss_pred             eecCCc---CeEEEEEecCCCEEEEEeCC---------CcEEEEeCCCCceEEEee---cCCCCEEEEEEeeCCCCCCcc
Q psy11350        148 QVGDTR---PISYCSFSPDSQHVATASWS---------GLCKLWTVPECELVQTFR---GHDCNVGAIEFHPLPSEGAVC  212 (471)
Q Consensus       148 ~~gh~~---~V~~~~~s~~~~~l~tg~~d---------g~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~  212 (471)
                      +.+|..   .|.+++|||||++|++++.+         +.|++||+.+++. ..+.   +|...+..++|+|++.     
T Consensus        53 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-----  126 (723)
T 1xfd_A           53 IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-----  126 (723)
T ss_dssp             ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-----
T ss_pred             eccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC-----
Confidence            345554   49999999999999999864         7889999998876 3333   3444588999999998     


Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCc-----------------ceEEEEECCCCCEEEEEeCCC-----------
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPF-----------------RVSRIKFHPSGRFLGTCCWDH-----------  264 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~v~~~~~s~~~~~i~~~~~d~-----------  264 (471)
                      .|+.++. +.|.+||+.+++.......+...                 .+.+++|+|||++|++++.++           
T Consensus       127 ~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~  205 (723)
T 1xfd_A          127 QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (723)
T ss_dssp             CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc
Confidence            5777775 89999999988776655543321                 237899999999999987553           


Q ss_pred             -----------------------eEEecc---c--cccccCC-----CCcceEEEEECCCCCEEEEEec----CCeEEEE
Q psy11350        265 -----------------------SWRLDT---P--LANLEGH-----EPFRVSRIKFHPSGRFLGTCCW----DHSWRLW  307 (471)
Q Consensus       265 -----------------------~~~~~~---~--~~~~~~~-----~~~~v~~l~~~~~~~~l~~~~~----dg~i~iw  307 (471)
                                             .+.++.   .  ...+..+     ....+..++|+|||++|++.+.    +..|++|
T Consensus       206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  285 (723)
T 1xfd_A          206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (723)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence                                   222221   1  1222222     1346889999999998877653    3579999


Q ss_pred             ECCCCcEEEEeeC-CCCCe----EEEEEeCCCCEEEE--EeCCC------eEEEEe-CCCCe--eEEEecccCcCEEE-E
Q psy11350        308 DLNQGQEVLHQEG-HGKPV----YCMSFQGDGSVVAT--GGLDA------FGRVWD-LRTGR--CIMFLEGHLKSVFS-V  370 (471)
Q Consensus       308 d~~~~~~~~~~~~-~~~~v----~~~~~s~d~~~l~t--~~~dg------~i~iwd-~~~~~--~~~~~~~h~~~v~~-~  370 (471)
                      |+.+++....+.. +...+    ..++|+|||+.|+.  +..++      .|++|| ...+.  +...+..+...+.. +
T Consensus       286 d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~  365 (723)
T 1xfd_A          286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL  365 (723)
T ss_dssp             ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred             eCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence            9999887665543 33333    37899999996664  45666      577788 34444  14455544445554 6


Q ss_pred             EEcCCCCEEEEEeCC---CcEEEEECCCcc--chheeccc--CCCccceeeccccceeeee
Q psy11350        371 DFSPDGYHLATGSED---NAVKIWDLRKRR--LLKWCTQL--LPNSIGVTSLLTDLYIDVL  424 (471)
Q Consensus       371 ~~sp~~~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~~--~~~~~~~~~~~~d~~~~~~  424 (471)
                      +|+|||+.|+..+.+   +.++||++....  ....+...  ........+++.|....++
T Consensus       366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          366 AYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             EEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             EEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence            999999999766655   789999986532  22223221  1223344555555544433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4.4e-19  Score=168.49  Aligned_cols=222  Identities=10%  Similarity=-0.009  Sum_probs=171.3

Q ss_pred             cCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceEEEeecCCCC---------EEEEEEeeCCCCCCccEEEEEe--CC
Q psy11350        153 RPISYCSFSPDSQHVATA-SWSGLCKLWTVPECELVQTFRGHDCN---------VGAIEFHPLPSEGAVCSLASCA--QD  220 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~~~~~l~s~~--~d  220 (471)
                      ..+.+++|+|+|++++++ ..++.|.+||+.+++.+..+..+...         +.+++|+|++.     .+++++  .+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-----~l~~~~~~~~  163 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-----TVYISGIGKE  163 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-----EEEEEEESSS
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC-----EEEEEecCCC
Confidence            346788999999976655 45799999999999998888765432         78999999988     455554  57


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      +.|.+||+.+++.+..+....                                       ..+.+++|+|+++++++++.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~---------------------------------------~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTG---------------------------------------KMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCC---------------------------------------TTCCCCEEETTTTEEEEECT
T ss_pred             ceEEEEcCCCCceEEEecCCC---------------------------------------CccceEEECCCCCEEEEEcC
Confidence            899999999887766655222                                       13667899999999999999


Q ss_pred             CCeEEEEECCCCcEEEEeeC----CCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        301 DHSWRLWDLNQGQEVLHQEG----HGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ++.|.+||+.+++.+..+..    +...+.+++|+|+++++++++. ++.|.+||+.+++.+..+..+.  ..+++|+|+
T Consensus       205 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~d  282 (353)
T 3vgz_A          205 DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPA  282 (353)
T ss_dssp             TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETT
T ss_pred             CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCC
Confidence            99999999999988777654    5566889999999997776665 5899999999999887776543  367999999


Q ss_pred             CCEEEEEe-CCCcEEEEECCCccchheecccCCCccceeeccccceee
Q psy11350        376 GYHLATGS-EDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYID  422 (471)
Q Consensus       376 ~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  422 (471)
                      |+++++++ .++.|.+||+.+++.+..+...  .....+.+..|....
T Consensus       283 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          283 RNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADGKTL  328 (353)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTSCEE
T ss_pred             CCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCCCEE
Confidence            99665555 6899999999999988766532  233344455555433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=9.6e-20  Score=190.77  Aligned_cols=303  Identities=11%  Similarity=0.108  Sum_probs=193.7

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC-----EEEEEEeeCCCCCCccEEEEEeCC--------
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCN-----VGAIEFHPLPSEGAVCSLASCAQD--------  220 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~~~~~l~s~~~d--------  220 (471)
                      ...+++|+|||++|+++  ||.|++||+.+++....+.+|...     ...+.|+|++.     .|+.++.+        
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-----~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-----FILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-----EEEEEEEEEECSSSCE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-----EEEEEECCeeeEEEcc
Confidence            35578999999999886  999999999999988888877643     23478999998     67777765        


Q ss_pred             -CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----ccccc--CCCC-------------
Q psy11350        221 -GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLE--GHEP-------------  280 (471)
Q Consensus       221 -g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~--~~~~-------------  280 (471)
                       +.+.+||+.+++... +..+.. .+...+|||||+.|+.+.. +.+.++..    ...+.  ++..             
T Consensus        91 ~~~~~~~d~~~~~~~~-l~~~~~-~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           91 TASYDIYDLNKRQLIT-EERIPN-NTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEEEEEEETTTTEECC-SSCCCT-TEEEEEECSSTTCEEEEET-TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             ceEEEEEECCCCcEEE-cccCCC-cceeeEECCCCCEEEEEEC-CeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence             567799999887543 444333 7999999999999999865 44433221    11111  1111             


Q ss_pred             ---cceEEEEECCCCCEEEEEecCC------------------------------------eEEEEECCC---Cc--EEE
Q psy11350        281 ---FRVSRIKFHPSGRFLGTCCWDH------------------------------------SWRLWDLNQ---GQ--EVL  316 (471)
Q Consensus       281 ---~~v~~l~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~  316 (471)
                         .....+.|||||++|+.++.|.                                    +|++||+.+   ++  ...
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence               1123589999999999875332                                    588899988   73  223


Q ss_pred             Eee------CCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEeCCCCe----eEE--Ee--cccCcCEE-----EEEEc
Q psy11350        317 HQE------GHGKPVYCMSFQGDGSVVATGGL----DAFGRVWDLRTGR----CIM--FL--EGHLKSVF-----SVDFS  373 (471)
Q Consensus       317 ~~~------~~~~~v~~~~~s~d~~~l~t~~~----dg~i~iwd~~~~~----~~~--~~--~~h~~~v~-----~~~~s  373 (471)
                      .+.      +|...+..++|+|||++++....    +..|++||+.+++    +..  .+  .+|...|.     .+.|+
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs  327 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT  327 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence            333      37788999999999997665532    3479999999887    221  12  34555544     78899


Q ss_pred             CCCCEEE-EEeC-C--CcEEEEECCCccchheecccCCCccceeeccccceeeeeccc---CCCcccccchhhhccc--c
Q psy11350        374 PDGYHLA-TGSE-D--NAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESL---NPGIGNIISSALKEQV--E  444 (471)
Q Consensus       374 p~~~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--~  444 (471)
                      |||+.|+ ..+. +  ..|.+||+..++..+ +....-....+..+. +..+.+....   ++....++........  .
T Consensus       328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~  405 (740)
T 4a5s_A          328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVT  405 (740)
T ss_dssp             TTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcce
Confidence            9999877 6654 3  358889988765543 322211112222222 3334333332   1233334332222111  1


Q ss_pred             ccee-----eecccceeeeecCCeEEEee
Q psy11350        445 PIPL-----LLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       445 ~~~~-----~~~~~~l~fs~dg~~lA~~~  468 (471)
                      ++.+     ........|||||++++...
T Consensus       406 ~lt~~~~~~~~~~~~~~~S~dg~~~~~~~  434 (740)
T 4a5s_A          406 CLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (740)
T ss_dssp             ESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             eeccccCCCCCceEEEEECCCCCEEEEEe
Confidence            2221     12456789999999887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=9.1e-20  Score=178.27  Aligned_cols=202  Identities=13%  Similarity=0.109  Sum_probs=146.1

Q ss_pred             ecCCcCeEEEEEecCCCEEE----EEeCCCcEEEEeCCCC--------c---eEEEeecCCCCEEEEEEeeCCCCCCccE
Q psy11350        149 VGDTRPISYCSFSPDSQHVA----TASWSGLCKLWTVPEC--------E---LVQTFRGHDCNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~----tg~~dg~i~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~  213 (471)
                      ..|...|.+++|+|+|++|+    +|+.|+.|+|||+.++        +   ....+.+|...|.+++|+|+...    +
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~----~  164 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS----M  164 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT----E
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC----E
Confidence            35778999999999999999    7888999999998654        2   24556679999999999998433    8


Q ss_pred             EEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCC
Q psy11350        214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       214 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      |++++.||+|++||+.++........|                                       ...|.+++|+|+|+
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~~---------------------------------------~~~v~~v~wspdg~  205 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLPS---------------------------------------TVAVTSVCWSPKGK  205 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEECG---------------------------------------GGCEEEEEECTTSS
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccCC---------------------------------------CCceeEEEEcCCCC
Confidence            999999999999999877443333222                                       33699999999999


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeeCC-------CCCeEEEEEeCCCCEEEEE-eCCC------eEEEEeCCCCe----
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQEGH-------GKPVYCMSFQGDGSVVATG-GLDA------FGRVWDLRTGR----  355 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~t~-~~dg------~i~iwd~~~~~----  355 (471)
                      +|++|+.||+|++||++ ++....+..|       ...|.+++|++++.++++. +.+|      .+++|+++..+    
T Consensus       206 ~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~  284 (434)
T 2oit_A          206 QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHP  284 (434)
T ss_dssp             CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCC
T ss_pred             EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCC
Confidence            99999999999999998 5555555443       2379999999988777553 3443      38999998652    


Q ss_pred             -eEEEec-------ccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q psy11350        356 -CIMFLE-------GHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDLR  394 (471)
Q Consensus       356 -~~~~~~-------~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~  394 (471)
                       ....+.       +...+-..+.+.++.+++++++ ..+.|.|....
T Consensus       285 ~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          285 EIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence             111111       1122233344446666665554 44556666643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=2.7e-18  Score=163.00  Aligned_cols=224  Identities=12%  Similarity=0.123  Sum_probs=148.2

Q ss_pred             EEEEEeC----CCcEEEEeC--CCCceEE-EeecCCCCEEEEEEeeCCCCCCccEEEEEeC--CCcEEEEeCCCCcc--e
Q psy11350        166 HVATASW----SGLCKLWTV--PECELVQ-TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ--DGSVKLWSLDKDTP--L  234 (471)
Q Consensus       166 ~l~tg~~----dg~i~iwd~--~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~--~  234 (471)
                      .|++|+.    ++.|.+|.+  .+++... ....+...+..++|+|++.     +++++..  ++.|.+|++.++..  +
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-----l~~~~~~~~~~~v~~~~~~~g~~~~~   78 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-----LYSVDKEDDEGGIAAWQIDGQTAHKL   78 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-----EEEEEEETTEEEEEEEEEETTEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-----EEEEEecCCCceEEEEEecCCcEEEe
Confidence            4555543    455666665  4565443 2334456677899999886     3444432  68999999976653  3


Q ss_pred             eeecCCCCcceEEEEECCCCCEEEEEe-CCCeEEecccc--------ccccCC--------CCcceEEEEECCCCCEEEE
Q psy11350        235 ANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTPL--------ANLEGH--------EPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       235 ~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~--------~~~~~~--------~~~~v~~l~~~~~~~~l~~  297 (471)
                      ..+..+.. .+..++|+|+|+++++++ .++.+.++...        ..+...        ....+.+++|+|+|+++++
T Consensus        79 ~~~~~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~  157 (347)
T 3hfq_A           79 NTVVAPGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI  157 (347)
T ss_dssp             EEEEEESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEE
T ss_pred             eeeecCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEE
Confidence            33332332 678999999999988888 56665443221        111111        1124788999999996666


Q ss_pred             EecCCeEEEEECC-CCcEEE--EeeC-CCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCC--Cee--EEEecccC----
Q psy11350        298 CCWDHSWRLWDLN-QGQEVL--HQEG-HGKPVYCMSFQGDGSVVAT-GGLDAFGRVWDLRT--GRC--IMFLEGHL----  364 (471)
Q Consensus       298 ~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~~~~~s~d~~~l~t-~~~dg~i~iwd~~~--~~~--~~~~~~h~----  364 (471)
                      ...++.|.+||+. +++...  .+.. ....+..++|+|||+++++ +..++.|.+|++..  ++.  +..+....    
T Consensus       158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  237 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT  237 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred             eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence            6678899999998 454322  2222 2346788999999996655 56788999999874  543  22332222    


Q ss_pred             --cCEEEEEEcCCCCEE-EEEeCCCcEEEEECCC
Q psy11350        365 --KSVFSVDFSPDGYHL-ATGSEDNAVKIWDLRK  395 (471)
Q Consensus       365 --~~v~~~~~sp~~~~l-~s~s~dg~i~iwd~~~  395 (471)
                        ..+..++|+|||++| +++..++.|.+|++..
T Consensus       238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence              358899999999987 5566789999999973

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=6.2e-19  Score=168.75  Aligned_cols=242  Identities=13%  Similarity=0.150  Sum_probs=166.4

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceEEEeec-CCCCEEEEEEeeCCCCCCccEEEEEe----------
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVP-ECELVQTFRG-HDCNVGAIEFHPLPSEGAVCSLASCA----------  218 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~----------  218 (471)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|++..   .+++++.          
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~---l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRA---IFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEE---EEEEECSSTTCCEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCE---EEEEEecCCcceeccce
Confidence            44568889999999999999877 99999997 7776543321 1123556889998861   0133442          


Q ss_pred             ---CCCcEEEEeCC-CCcceeeecC---CCCcceEEEEECCCCCEEEEEeC-CCeEEecccc--------ccccCC-CCc
Q psy11350        219 ---QDGSVKLWSLD-KDTPLANLEG---HEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDTPL--------ANLEGH-EPF  281 (471)
Q Consensus       219 ---~dg~i~iwd~~-~~~~~~~~~~---~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~~--------~~~~~~-~~~  281 (471)
                         .+|++.+|++. .++....+..   .....+.+++|+|+|++++++.. ++.+.++...        ..+... ...
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence               68999999997 4554433321   22337899999999998887764 3444432211        111111 134


Q ss_pred             ceEEEEECCCCCEEEEEec-CCeEEEEECC--CCcEEE---Eee-------CCCC------CeEEEE-EeCCCCEEEEEe
Q psy11350        282 RVSRIKFHPSGRFLGTCCW-DHSWRLWDLN--QGQEVL---HQE-------GHGK------PVYCMS-FQGDGSVVATGG  341 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~---~~~-------~~~~------~v~~~~-~s~d~~~l~t~~  341 (471)
                      .+..++|+|+|+++++++. ++.|.+|++.  +++...   .+.       +|..      .+..++ |+|||++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            5899999999999988775 6899999865  455421   221       1222      488999 999999888776


Q ss_pred             CCC------eEEEEeCC-CCeeEE---EecccCcCEEEEEEcC---CCCEEEEEeCC-CcEEEEECCCc
Q psy11350        342 LDA------FGRVWDLR-TGRCIM---FLEGHLKSVFSVDFSP---DGYHLATGSED-NAVKIWDLRKR  396 (471)
Q Consensus       342 ~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~~~~sp---~~~~l~s~s~d-g~i~iwd~~~~  396 (471)
                      .+.      .|.+|++. +++...   ....+...+..++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            432      89999996 565443   2333455677899999   89999998865 89999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.8e-17  Score=152.73  Aligned_cols=241  Identities=9%  Similarity=0.093  Sum_probs=178.5

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee------cCCCCEEEEEEe-eCCCCCCccEEEEEeC-C
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR------GHDCNVGAIEFH-PLPSEGAVCSLASCAQ-D  220 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~~~~~~l~s~~~-d  220 (471)
                      .+|-..+.+++++|+|.++++...++.|.+||.. ++.+..+.      +|...+.++++. +++.     ++++... +
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-----l~v~~~~~~   99 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-----IIVTERSPT   99 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-----EEEEECGGG
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-----EEEEcCCCC
Confidence            3566789999999999988888889999999976 66666654      234578899995 5554     4444433 8


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc----cccC-CCCcceEEEEECCCCCEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA----NLEG-HEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~----~~~~-~~~~~v~~l~~~~~~~~l  295 (471)
                      +.|.+|| .+++.+..+.......+..++++|+|+.+++...++.+.+.....    .+.. .....+.+++++|+++++
T Consensus       100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence            9999999 567776666544434789999999999877777677655533211    1111 112358899999999977


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCC--CCCeEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCeeEEEecccC--cCEEEE
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGH--GKPVYCMSFQGDGSVVATGGLDA-FGRVWDLRTGRCIMFLEGHL--KSVFSV  370 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~t~~~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~~  370 (471)
                      ++...++.|++||.. ++.+..+..+  ...+..++++++|+++++...++ .|.+||. +++.+..+..+.  ..+.++
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence            777789999999974 5566666443  36789999999999888888776 9999995 566666665543  348899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        371 DFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      +++|+|+++++ +.|+.|++|++....++
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred             EECCCCcEEEE-CCCCeEEEEEccccccc
Confidence            99999987777 67999999998765443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=1.4e-17  Score=159.00  Aligned_cols=225  Identities=13%  Similarity=0.090  Sum_probs=151.2

Q ss_pred             cCCCEEEEEeC----CCcEEEEeC--CCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC----CcEEEEeCCC-
Q psy11350        162 PDSQHVATASW----SGLCKLWTV--PECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD----GSVKLWSLDK-  230 (471)
Q Consensus       162 ~~~~~l~tg~~----dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~-  230 (471)
                      +...++++|+.    ++.|++|.+  .+++.......+...+..++|+|++.     +|++++.+    +.|.+|++.. 
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~-----~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGK-----FVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSS-----EEEEEECCSSTTCEEEEEEEETT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCC-----EEEEEEccCCCCCcEEEEEEeCC
Confidence            34456667754    567888866  45654433222667778899999998     68888775    7999998865 


Q ss_pred             -Ccc--eeeecCCCCcceEEEEECCCCCEEEEEe-CCCeEEecccc-----ccc------cCC-------CCcceEEEEE
Q psy11350        231 -DTP--LANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTPL-----ANL------EGH-------EPFRVSRIKF  288 (471)
Q Consensus       231 -~~~--~~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~-----~~~------~~~-------~~~~v~~l~~  288 (471)
                       +..  +.....+. .....+++  +++++++++ .++.+.++...     ..+      .+.       ....+.+++|
T Consensus        86 ~g~~~~~~~~~~~~-~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  162 (361)
T 3scy_A           86 KGTLHLLNTQKTMG-ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI  162 (361)
T ss_dssp             TTEEEEEEEEECSS-SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred             CCcEEEeeEeccCC-CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence             332  22333222 25677777  888877776 45554443211     110      010       0123578999


Q ss_pred             CCCCCEEEEEec-CCeEEEEECCCCc-------E------EEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCC
Q psy11350        289 HPSGRFLGTCCW-DHSWRLWDLNQGQ-------E------VLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRT  353 (471)
Q Consensus       289 ~~~~~~l~~~~~-dg~i~iwd~~~~~-------~------~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~  353 (471)
                      +|+|+++++++. ++.|.+|++....       .      ......+......++|+|||+++++++ .++.|.+|++.+
T Consensus       163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            999997766654 7899999887543       1      122234456678999999999887776 689999999987


Q ss_pred             Cee--EEEe---cccCcCEEEEEEcCCCCEEEEEeCC--CcEEEEECC
Q psy11350        354 GRC--IMFL---EGHLKSVFSVDFSPDGYHLATGSED--NAVKIWDLR  394 (471)
Q Consensus       354 ~~~--~~~~---~~h~~~v~~~~~sp~~~~l~s~s~d--g~i~iwd~~  394 (471)
                      ++.  +..+   ..+...+..++|+|||++|+++..+  +.|.+|++.
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          243 GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            754  2222   2334567899999999998776654  899999996

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.1e-17  Score=157.73  Aligned_cols=239  Identities=12%  Similarity=0.074  Sum_probs=180.2

Q ss_pred             CcCeEEEEEecCCCEEEEEeCC------------------------CcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCC
Q psy11350        152 TRPISYCSFSPDSQHVATASWS------------------------GLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLP  206 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~  206 (471)
                      -+.|.+++++|+|+++++...+                        +.|.+||..+++.+..+. ++-.....++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3579999999999999888766                        479999999898877664 344678899999998


Q ss_pred             CCCCccEEEEEeCCCcEEEEeCCCCc-ceeeec--------CCCCcceEEEEECC-CCCEEEEEe-CCCeEEecccccc-
Q psy11350        207 SEGAVCSLASCAQDGSVKLWSLDKDT-PLANLE--------GHEPFRVSRIKFHP-SGRFLGTCC-WDHSWRLDTPLAN-  274 (471)
Q Consensus       207 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~s~-~~~~i~~~~-~d~~~~~~~~~~~-  274 (471)
                      .     ++++...++.|++|+..... .+..+.        ...-.....++++| ++.++++.+ .++.+........ 
T Consensus       103 ~-----l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~  177 (329)
T 3fvz_A          103 N-----YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF  177 (329)
T ss_dssp             C-----EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE
T ss_pred             C-----EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE
Confidence            7     78888888999999985442 444442        11122688999999 788777775 5666555332111 


Q ss_pred             ---ccCC---------CCcceEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeC------C
Q psy11350        275 ---LEGH---------EPFRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQG------D  333 (471)
Q Consensus       275 ---~~~~---------~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------d  333 (471)
                         +...         .-.....|+++|+ +.++++...++.|++||..+++.+..+.  .+...+.+++|+|      +
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence               1110         0123789999998 6667777788999999999888887773  4567889999999      3


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEEEec---ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        334 GSVVATGGLDAFGRVWDLRTGRCIMFLE---GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       334 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      |..+++...+..|++||+.+++.+..+.   ++...+.+|+++|+|.++++...++.|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            3333333345589999999999988873   6777899999999998888888999999999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.5e-18  Score=165.70  Aligned_cols=222  Identities=13%  Similarity=-0.059  Sum_probs=151.1

Q ss_pred             eecCCcCeEE-----EEEecCCCEEEEEeC-CC--cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        148 QVGDTRPISY-----CSFSPDSQHVATASW-SG--LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       148 ~~gh~~~V~~-----~~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      +..|......     .+|||||++|+.++. +|  .|.+||+.+++......++...+..+.|+|++.     .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-----~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-----ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-----EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-----EEEEEeC
Confidence            3345555555     789999999998887 66  488999999888877777766666788999998     6999998


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEE--EECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE---
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRI--KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF---  294 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---  294 (471)
                      ++.|.+||+.+++....+..+.. .+...  .++|++.+++....++.                     .+.|...+   
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~---------------------~~~~~~~~~~~  158 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAE-WVGYGTWVANSDCTKLVGIEIRRE---------------------DWVPLTDWKKF  158 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGG---------------------GCCCCCSHHHH
T ss_pred             CCeEEEEECCCCcceeeeechhh-cccccceeECCCCCeeccccccCc---------------------ccccccccchh
Confidence            99999999999876655554433 22222  23666666554221100                     00000000   


Q ss_pred             --EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCC------CeEEEEeCCCCeeEEEecccC-
Q psy11350        295 --LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGGLD------AFGRVWDLRTGRCIMFLEGHL-  364 (471)
Q Consensus       295 --l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~d------g~i~iwd~~~~~~~~~~~~h~-  364 (471)
                        ++....++.|.+||+.+++.. .+..+...+..++|+| ||+.|+....+      ..|.++|+..+... .+..+. 
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~  236 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAE  236 (388)
T ss_dssp             HHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCT
T ss_pred             hhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCC
Confidence              011223478999999988654 4445667789999999 99988877653      37888888765443 444444 


Q ss_pred             -cCEEEEEEcCCCCEEEEEeC-CC----cEEEEECCCccc
Q psy11350        365 -KSVFSVDFSPDGYHLATGSE-DN----AVKIWDLRKRRL  398 (471)
Q Consensus       365 -~~v~~~~~sp~~~~l~s~s~-dg----~i~iwd~~~~~~  398 (471)
                       ..+..++|+|||+.|+..+. ++    .|++||+.+++.
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence             35888999999997765443 22    399999998874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=5.7e-17  Score=154.62  Aligned_cols=241  Identities=11%  Similarity=-0.019  Sum_probs=167.0

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCceEEEeecC------CCCEEEEEEeeCCCCCC
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASW----------SGLCKLWTVPECELVQTFRGH------DCNVGAIEFHPLPSEGA  210 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~  210 (471)
                      .+..+..+  .++|+|||++|++++.          ++.|.+||+.+++.+..+..+      ......++++|++.   
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~---  120 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK---  120 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS---
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC---
Confidence            34445555  8999999999998863          578999999999988887643      23456899999998   


Q ss_pred             ccEEEEEeC--CCcEEEEeCCCCcceee-ecCCCCcceEEEEECCCC-CEEEEEeCCCeEEeccc---c---------cc
Q psy11350        211 VCSLASCAQ--DGSVKLWSLDKDTPLAN-LEGHEPFRVSRIKFHPSG-RFLGTCCWDHSWRLDTP---L---------AN  274 (471)
Q Consensus       211 ~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~-~~i~~~~~d~~~~~~~~---~---------~~  274 (471)
                        +|+++..  +++|.+||+.+++.+.. +....   ...+.+.|++ ..+++.+.|+.+.+...   .         ..
T Consensus       121 --~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~---~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~  195 (361)
T 2oiz_A          121 --FIVLQNASPATSIGIVDVAKGDYVEDVTAAAG---CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM  195 (361)
T ss_dssp             --EEEEEEESSSEEEEEEETTTTEEEEEEGGGTT---EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred             --EEEEECCCCCCeEEEEECCCCcEEEEEecCCC---cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence              5766653  68999999999988776 54322   2224455554 45555556655332111   0         01


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEeeCC------C----CCeEEEEEeCCCCEEEEEeC
Q psy11350        275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE--VLHQEGH------G----KPVYCMSFQGDGSVVATGGL  342 (471)
Q Consensus       275 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~------~----~~v~~~~~s~d~~~l~t~~~  342 (471)
                      +... . ....+.++|++..++..+.++.|.++|+.....  ...+...      .    .....++|+|+++.++++..
T Consensus       196 ~~~~-~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~  273 (361)
T 2oiz_A          196 FSVK-D-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH  273 (361)
T ss_dssp             SCTT-T-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred             EcCC-C-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence            1111 1 112233456777788888899999999975532  2221110      0    11113789999887777643


Q ss_pred             -----------CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--cchhee
Q psy11350        343 -----------DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR--RLLKWC  402 (471)
Q Consensus       343 -----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~~  402 (471)
                                 .+.|.+||+.+++.+.++..+.  +.+++|+|+|++|++++. ++|.+||..++  +.+.++
T Consensus       274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          274 PDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             SSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             cCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence                       3589999999999999998876  999999999999998887 99999999999  877665

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=5.8e-18  Score=172.41  Aligned_cols=227  Identities=10%  Similarity=-0.006  Sum_probs=166.1

Q ss_pred             cCC-cCeEEEEEecCCCEEEEEeC---CCcEEEEeCC---CCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        150 GDT-RPISYCSFSPDSQHVATASW---SGLCKLWTVP---ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       150 gh~-~~V~~~~~s~~~~~l~tg~~---dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .|. ..|.+++|||| +++++++.   +....||.+.   .+... .+..+ ..+...+|+|++..    .+++.+.++.
T Consensus        61 ~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~----~~~~s~~~~~  133 (582)
T 3o4h_A           61 REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEA----VVFTGATEDR  133 (582)
T ss_dssp             SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSC----EEEEEECSSC
T ss_pred             cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCe----EEEEecCCCC
Confidence            444 68999999999 77777775   4545565443   23333 33332 23457789998864    4455555556


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC----CeEEecc----ccccccCCCCcceEEEEECCCCCE
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLDT----PLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d----~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      +.+||+.+++.......+.    .+++|+|||+++++++.+    ..+.++.    ....+..+ ...+..++|+|||++
T Consensus       134 ~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~-~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          134 VALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG-EGSFSSASISPGMKV  208 (582)
T ss_dssp             EEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS-SCEEEEEEECTTSCE
T ss_pred             ceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC-CCccccceECCCCCE
Confidence            6699998886554443322    789999999999988776    3333322    23344444 557899999999999


Q ss_pred             EEEEecCC--eEEEEECCCCcEEEEeeCCCCCeEEEE--------EeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        295 LGTCCWDH--SWRLWDLNQGQEVLHQEGHGKPVYCMS--------FQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       295 l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      |+++..++  .|++||+.+++.. .+.+|...+..++        |+|||.++++++.++.+++|++  ++...   .+.
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~  282 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQ  282 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCS
T ss_pred             EEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCC
Confidence            99888888  8999999998877 7777877777777        9999999999999999999999  76554   344


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCc---EEEEECCC
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNA---VKIWDLRK  395 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~---i~iwd~~~  395 (471)
                      +.+.+++|+ +++++++++.+.+   +.+||...
T Consensus       283 ~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          283 GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            678999999 9999998887754   77777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.78  E-value=1.5e-17  Score=156.66  Aligned_cols=249  Identities=11%  Similarity=-0.015  Sum_probs=163.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCc-ceEEEEECCCCCEEEEEe-CCCeEEeccc-----cccccCCC----Cc
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPF-RVSRIKFHPSGRFLGTCC-WDHSWRLDTP-----LANLEGHE----PF  281 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~i~~~~-~d~~~~~~~~-----~~~~~~~~----~~  281 (471)
                      ++++++.++.|.+||+.+++.+..+...... .+..++|+|+|+++++++ .++.+.++..     ...+....    ..
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            6899999999999999999888877644322 377899999998765554 4566544321     11122111    11


Q ss_pred             ceEEEEECCCCCEEEEEe------------cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy11350        282 RVSRIKFHPSGRFLGTCC------------WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iw  349 (471)
                      .+..++|+|+|++|++++            .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++  ++.|++|
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            467899999999998886            579999999999887777664 4567889999999988887  6889999


Q ss_pred             eCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCccchheecc-
Q psy11350        350 DLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN------------------------AVKIWDLRKRRLLKWCTQ-  404 (471)
Q Consensus       350 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg------------------------~i~iwd~~~~~~~~~~~~-  404 (471)
                      |+.+++.+..+..+.. ...+.|+|++.+++.++..+                        .|.+||+.+++.. .+.. 
T Consensus       160 d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~  237 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR  237 (337)
T ss_dssp             ETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE
T ss_pred             ECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC
Confidence            9999988877765431 11237899988766554332                        4689999998875 2221 


Q ss_pred             cCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeec
Q psy11350        405 LLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       405 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                      ........+.+..|....+..   .+...++.......+..+........++|+|||++|++...
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB
T ss_pred             CCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC
Confidence            111122223444443332222   11122222222222333333345678999999998887643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=174.10  Aligned_cols=232  Identities=14%  Similarity=0.082  Sum_probs=162.6

Q ss_pred             CeEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        154 PISYCSFSPDSQHVATASW---------SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      .|.+++|||||++|++++.         ++.|++||+.+++.+.... ....+..++|+|++.     .|+.+. ++.|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~-----~la~~~-~~~i~  133 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGS-----KLAYVY-QNNIY  133 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTT-----CEEEEE-TTEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCC-----EEEEEE-CCeEE
Confidence            4889999999999998876         6899999999887631111 135688999999998     477764 78999


Q ss_pred             EEeCCCCcceeeecCCCCcc-----------------eEEEEECCCCCEEEEEeCCC-----------------------
Q psy11350        225 LWSLDKDTPLANLEGHEPFR-----------------VSRIKFHPSGRFLGTCCWDH-----------------------  264 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~-----------------v~~~~~s~~~~~i~~~~~d~-----------------------  264 (471)
                      +|++.+++............                 ..+++|+|||++|++++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            99998887654332221111                 24899999999999988652                       


Q ss_pred             -----------eEEecc---ccc----c------ccCCCCcceEEEEECCCCCEEEEEecC----CeEEEEE----CCCC
Q psy11350        265 -----------SWRLDT---PLA----N------LEGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLWD----LNQG  312 (471)
Q Consensus       265 -----------~~~~~~---~~~----~------~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd----~~~~  312 (471)
                                 .+.++.   ...    .      +..+ ...+..++|+||++++++....    ..|.+||    +.++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC-cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                       122221   111    1      1223 4568999999998777764433    2488999    8777


Q ss_pred             cEEEEe----eCCCCCeE-----EEEEeCCCCEEEE--EeCCC--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE
Q psy11350        313 QEVLHQ----EGHGKPVY-----CMSFQGDGSVVAT--GGLDA--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       313 ~~~~~~----~~~~~~v~-----~~~~s~d~~~l~t--~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      +....+    .+|...+.     .+.|+|||+.|+.  +..+|  .|++||+.+++ ...+..+...+..+.++ +++.|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i  370 (719)
T 1z68_A          293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSL  370 (719)
T ss_dssp             ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEE
T ss_pred             ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEE
Confidence            655444    46776666     7899999985544  44555  57778887776 44666666678888777 77777


Q ss_pred             EEEeCC-----CcEEEEECCC
Q psy11350        380 ATGSED-----NAVKIWDLRK  395 (471)
Q Consensus       380 ~s~s~d-----g~i~iwd~~~  395 (471)
                      +..+.+     +.+++|.+..
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEecCCCCCceEEEEEEeC
Confidence            666654     8888998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1e-16  Score=153.25  Aligned_cols=227  Identities=10%  Similarity=0.029  Sum_probs=150.6

Q ss_pred             EEEEEeCC--CcEEEEeC--CCCceEEE--ee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC-CCcceeee
Q psy11350        166 HVATASWS--GLCKLWTV--PECELVQT--FR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD-KDTPLANL  237 (471)
Q Consensus       166 ~l~tg~~d--g~i~iwd~--~~~~~~~~--~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~  237 (471)
                      +|++|++.  +.|.+|++  .+++....  .. .....+..++|+|++.     +|++++.+ .|.+|++. +++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-----~l~~~~~~-~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-----NIYGAAMK-KWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-----EEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-----EEEEEccc-eEEEEEECCCCCEEEee
Confidence            46667654  56877764  45654322  21 2334678999999998     68888887 99999997 67654332


Q ss_pred             cCCCCcceEEEEECCCCCE--EEEEe-------------CCCeEEecccc------ccccC---CCCcceEEEEECCCCC
Q psy11350        238 EGHEPFRVSRIKFHPSGRF--LGTCC-------------WDHSWRLDTPL------ANLEG---HEPFRVSRIKFHPSGR  293 (471)
Q Consensus       238 ~~~~~~~v~~~~~s~~~~~--i~~~~-------------~d~~~~~~~~~------~~~~~---~~~~~v~~l~~~~~~~  293 (471)
                      .......+..++|+|+|++  ++++.             .++.+.++...      ..+..   .....+.+++|+|+|+
T Consensus        78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            2111113556899999995  44442             46664443211      11111   1234689999999999


Q ss_pred             EEEEEec-CCeEEEEECC-CCcEE--EEee--CCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCC--CCeeE---E---
Q psy11350        294 FLGTCCW-DHSWRLWDLN-QGQEV--LHQE--GHGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLR--TGRCI---M---  358 (471)
Q Consensus       294 ~l~~~~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~--~~~~~---~---  358 (471)
                      +|++++. ++.|++||+. +++..  ..+.  .|...+..++|+|||++|++++. ++.|.+|++.  +++..   .   
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence            8887764 6799999998 67643  2333  24667899999999998887764 7899999765  56542   1   


Q ss_pred             Eec----ccCc------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEECC-Cccc
Q psy11350        359 FLE----GHLK------SVFSVD-FSPDGYHLATGSED-N-----AVKIWDLR-KRRL  398 (471)
Q Consensus       359 ~~~----~h~~------~v~~~~-~sp~~~~l~s~s~d-g-----~i~iwd~~-~~~~  398 (471)
                      .+.    +|..      .+..++ |+|||++|++++.+ +     .|.+|++. ++++
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~  295 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence            222    1222      588999 99999998876543 2     89999996 5554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=3.4e-18  Score=165.02  Aligned_cols=235  Identities=12%  Similarity=-0.023  Sum_probs=155.0

Q ss_pred             CeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        154 PISYCSFSPDSQHVATASWS---GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      .+.+++|||||++|+.+...   ..|++||+.+++......++......+.|+|++.     .|+.++.++.|.+||+.+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~-----~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER-----AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS-----EEEEEETTTEEEEEETTT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC-----EEEEEEcCCcEEEEECCC
Confidence            36778999999998877543   3789999988876554433333233478999998     688888899999999988


Q ss_pred             CcceeeecCCCCcceEE-------------------EEECCCCCEEEEEe-----CCCeEEec---cc-cccccCCCCcc
Q psy11350        231 DTPLANLEGHEPFRVSR-------------------IKFHPSGRFLGTCC-----WDHSWRLD---TP-LANLEGHEPFR  282 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~i~~~~-----~d~~~~~~---~~-~~~~~~~~~~~  282 (471)
                      ++.......+.. ....                   +.|+|+++.++...     .+..+.+.   .. ...+..+ ...
T Consensus       112 ~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-~~~  189 (396)
T 3c5m_A          112 LEEQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD-TAW  189 (396)
T ss_dssp             CCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE-SSC
T ss_pred             CCcEEEEecccc-cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC-Ccc
Confidence            876555543332 1112                   34577777655442     22222221   11 1112222 346


Q ss_pred             eEEEEECC-CCCEEEEEecC------CeEEEEECCCCcEEEEeeCC-CCCeEEEEEeCCCCEEEEEeCC-----CeEEEE
Q psy11350        283 VSRIKFHP-SGRFLGTCCWD------HSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQGDGSVVATGGLD-----AFGRVW  349 (471)
Q Consensus       283 v~~l~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~~~d-----g~i~iw  349 (471)
                      +..+.|+| ++..|+..+.+      ..|.+||+..++........ ...+..++|+|||++|+.++.+     +.|++|
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA  269 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence            88999999 78877776643      36899998766533322211 2357889999999987776543     459999


Q ss_pred             eCCCCeeEEEecccCcCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEECCCccc
Q psy11350        350 DLRTGRCIMFLEGHLKSVFSVDFSP-DGYHLATGS----------------EDNAVKIWDLRKRRL  398 (471)
Q Consensus       350 d~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s----------------~dg~i~iwd~~~~~~  398 (471)
                      |+.+++........  ... +.|+| +|+++++++                .++.|.+||+.+++.
T Consensus       270 d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          270 NPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             ECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            99988654332211  233 89999 999888765                346799999987764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=7.7e-17  Score=166.73  Aligned_cols=246  Identities=13%  Similarity=0.032  Sum_probs=173.3

Q ss_pred             ecCCcCeEEEEEecCCCEEEEE--eCCCcEEEEeCCCCceEEEeecCCCCEE---------EEEEe--eCCCCCCccE-E
Q psy11350        149 VGDTRPISYCSFSPDSQHVATA--SWSGLCKLWTVPECELVQTFRGHDCNVG---------AIEFH--PLPSEGAVCS-L  214 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~~~~~~-l  214 (471)
                      .+|...|..++|++++-+++..  +.++...||....+.....+..|...+.         ...|+  |++.     . |
T Consensus        20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-----~~l   94 (662)
T 3azo_A           20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG-----PLL   94 (662)
T ss_dssp             HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS-----CEE
T ss_pred             hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCC-----eEE
Confidence            4688999999999886666666  5578899999655555667777766666         66676  8887     5 5


Q ss_pred             EEEeC-CCcEEEEeCC--CCcceeeecCC----CCcceEEEEECCCCCEEEEEeCC----------CeEEe---cc----
Q psy11350        215 ASCAQ-DGSVKLWSLD--KDTPLANLEGH----EPFRVSRIKFHPSGRFLGTCCWD----------HSWRL---DT----  270 (471)
Q Consensus       215 ~s~~~-dg~i~iwd~~--~~~~~~~~~~~----~~~~v~~~~~s~~~~~i~~~~~d----------~~~~~---~~----  270 (471)
                      +.++. +..|.+|++.  .......+...    ....+..++|+|||+.|++++.+          ..+.+   ..    
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            55443 5667777765  20333444432    23378899999999999988876          23322   22    


Q ss_pred             ---cccccc-CCCCcceEEEEECCCCCEEEEEecC--------CeEEEEECC-CC---cEEEEeeCCCCCeEEEEEeCCC
Q psy11350        271 ---PLANLE-GHEPFRVSRIKFHPSGRFLGTCCWD--------HSWRLWDLN-QG---QEVLHQEGHGKPVYCMSFQGDG  334 (471)
Q Consensus       271 ---~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~s~d~  334 (471)
                         ....+. .+ ...+..++|+|||++|+.++.+        ..|++||+. ++   +......+|...+..+.|+|||
T Consensus       175 ~~~~~~~l~~~~-~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          175 DRSAVRELSDDA-HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             CGGGSEESSCSC-SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             cCCceeEEEecC-CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence               222333 33 3467889999999999988755        379999998 56   4444445567889999999999


Q ss_pred             CEEEEEeCCC--eEEEEeCCCCeeEEEecccCcC--------EEEEEEcCCCCEEEEEeCCCcEEEE--ECCCccchhee
Q psy11350        335 SVVATGGLDA--FGRVWDLRTGRCIMFLEGHLKS--------VFSVDFSPDGYHLATGSEDNAVKIW--DLRKRRLLKWC  402 (471)
Q Consensus       335 ~~l~t~~~dg--~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~l~s~s~dg~i~iw--d~~~~~~~~~~  402 (471)
                      +++++++.++  .|++||+.+++.......+...        +..++|+|+++++++++. +.++||  |+..++ +..+
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence            9888888888  6777777677655444433322        567899999999999998 999999  655554 3444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=4.2e-16  Score=144.39  Aligned_cols=240  Identities=12%  Similarity=0.031  Sum_probs=175.4

Q ss_pred             eeecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      .+..+.....+++|+|+|+ +++++..++.|.+|+..++  ...+..+...+.+++++|++.     ++++...++.|.+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-----l~v~~~~~~~i~~   94 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-----LIACSHGLRRLER   94 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-----EEEEETTTTEEEE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-----EEEEecCCCeEEE
Confidence            3445667788999999998 7788888999999998876  666777778899999999987     5666666789999


Q ss_pred             EeCCCCcceeeecC---CCCcceEEEEECCCCCEEEEE----eC-------------C-CeEEeccc--cccccCCCCcc
Q psy11350        226 WSLDKDTPLANLEG---HEPFRVSRIKFHPSGRFLGTC----CW-------------D-HSWRLDTP--LANLEGHEPFR  282 (471)
Q Consensus       226 wd~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~i~~~----~~-------------d-~~~~~~~~--~~~~~~~~~~~  282 (471)
                      ||..+++.......   .....+..++++|+|+++++.    +.             . +.+.+...  ...+..+ ...
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~-~~~  173 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD-RVK  173 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC-CSS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecC-CCC
Confidence            99987765433221   112246789999999988873    21             1 23444321  1122222 335


Q ss_pred             eEEEEECCCCCEEEEEecCCeEEEEECC-CCcE---EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy11350        283 VSRIKFHPSGRFLGTCCWDHSWRLWDLN-QGQE---VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM  358 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~  358 (471)
                      ...++|+|+++.+++.+.++.|.+||+. +++.   ...+..+...+.+++++++|+++++.  ++.|.+||.. ++.+.
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence            7899999999988777778999999997 4544   23333345566789999999877666  8899999986 77787


Q ss_pred             EecccCcCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        359 FLEGHLKSVFSVDF-SPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       359 ~~~~h~~~v~~~~~-sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      .+..+.. +++++| .|+++.|++++.++ +.-++..++++.
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            8877777 999999 58999998888764 555677666544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=5.1e-17  Score=153.85  Aligned_cols=193  Identities=16%  Similarity=0.098  Sum_probs=139.3

Q ss_pred             EEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEe-CCCeEEeccc-----cc
Q psy11350        200 IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTP-----LA  273 (471)
Q Consensus       200 l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~-----~~  273 (471)
                      +++++.+.     ++++++.++.|.+||+.+++.+..+..+....+..++|+|+|++++++. .++.+.++..     ..
T Consensus         5 ~~~~~~~~-----~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            5 PALKAGHE-----YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCTTCE-----EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccCCCE-----EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            44555555     7899999999999999999888887765433578999999999766554 5666554322     11


Q ss_pred             cccCCC-----CcceEEEEECCCCCEEEEEecC------------CeEEEEECCCCcE---EEEeeCCCCCeEEEEEeCC
Q psy11350        274 NLEGHE-----PFRVSRIKFHPSGRFLGTCCWD------------HSWRLWDLNQGQE---VLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       274 ~~~~~~-----~~~v~~l~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~d  333 (471)
                      .+....     ...+..++|+|+|++|++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD  158 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC
Confidence            222111     1236789999999999998866            8999999988543   33333 3346889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEEEecccC-------------------------------------------------
Q psy11350        334 GSVVATGGLDAFGRVWDLRTGRCIMFLEGHL-------------------------------------------------  364 (471)
Q Consensus       334 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~-------------------------------------------------  364 (471)
                      |+ +++++.  .|++||+.+++.+..+..+.                                                 
T Consensus       159 g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          159 GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            99 555543  49999999988776654331                                                 


Q ss_pred             -------------------cCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        365 -------------------KSVFSVDFSP-DGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       365 -------------------~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                                         ..+.+++|+| ++++++++  ++.|.+||+.+++.+..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  292 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN  292 (349)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence                               1345677788 99888887  7889999999888776654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.3e-16  Score=153.55  Aligned_cols=238  Identities=13%  Similarity=0.075  Sum_probs=161.1

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEE--eeCCCCCCccEEEEE---------
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEF--HPLPSEGAVCSLASC---------  217 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~l~s~---------  217 (471)
                      .+|...+.+++|+|||+.|+.++.++.|++||+.+++....+..+...+....|  +|++.     .++..         
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~-----~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT-----KLVGIEIRREDWVP  151 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS-----EEEEEEEEGGGCCC
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC-----eeccccccCccccc
Confidence            456666667789999999999999999999999999888777777666655554  67776     44432         


Q ss_pred             -------------eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCC------e-EEec---cccc
Q psy11350        218 -------------AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDH------S-WRLD---TPLA  273 (471)
Q Consensus       218 -------------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~------~-~~~~---~~~~  273 (471)
                                   ..+..|.+||+.+++....... .. .+..+.|+| +|+.|+.+..++      . |.+.   ....
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~  229 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR  229 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred             ccccchhhhhhccCCcceEEEEECCCCceEEeecC-Cc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence                         2346799999988865444332 22 688999999 999998877642      2 3321   1222


Q ss_pred             cccCCCC-cceEEEEECCCCCEEEEEecC-C----eEEEEECCCCcEEE--EeeCCCCC---eEEEEEeCCCCEEEEE--
Q psy11350        274 NLEGHEP-FRVSRIKFHPSGRFLGTCCWD-H----SWRLWDLNQGQEVL--HQEGHGKP---VYCMSFQGDGSVVATG--  340 (471)
Q Consensus       274 ~~~~~~~-~~v~~l~~~~~~~~l~~~~~d-g----~i~iwd~~~~~~~~--~~~~~~~~---v~~~~~s~d~~~l~t~--  340 (471)
                      .+..+.. ..+..+.|+|+|+.|+..+.+ +    .|++||+.+++...  .+.++...   ...+.|+|||+.|+..  
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  309 (388)
T 3pe7_A          230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ  309 (388)
T ss_dssp             ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred             EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence            3333322 357789999999987665432 2    49999999887432  23221000   1123799999987754  


Q ss_pred             -------eCCCeEEEEeCCCCeeEEEecccCc-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q psy11350        341 -------GLDAFGRVWDLRTGRCIMFLEGHLK-----------SVFSVDFSPDGYHLATGS-EDNAVKIWDLR  394 (471)
Q Consensus       341 -------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~  394 (471)
                             ..+..|++||+.+++. ..+..|..           .+.+++|+|||+.|+.++ .+|...||.++
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                   4566899999998765 34555554           578899999999887665 46776676554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=9e-16  Score=159.93  Aligned_cols=240  Identities=12%  Similarity=0.021  Sum_probs=171.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc--
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSG-----LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS--  222 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--  222 (471)
                      +|+..+.+++|||||++||.++.++     .|++||+.+++.......+ ..+..++|+|++.     .|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-----~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK-----GMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS-----EEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC-----EEEEEEECCccc
Confidence            4666789999999999999776443     8999999999877643222 2366899999998     6888777765  


Q ss_pred             --------------EEEEeCCCCcce--eeecCC-CCcceEEEEECCCCCEEEEEeCC-----CeEEe---cc------c
Q psy11350        223 --------------VKLWSLDKDTPL--ANLEGH-EPFRVSRIKFHPSGRFLGTCCWD-----HSWRL---DT------P  271 (471)
Q Consensus       223 --------------i~iwd~~~~~~~--~~~~~~-~~~~v~~~~~s~~~~~i~~~~~d-----~~~~~---~~------~  271 (471)
                                    |.+|++.+++..  ..+... ....+..+.|+|||++|+.++..     ..+.+   ..      .
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999887632  222332 22257899999999999887752     23332   22      1


Q ss_pred             ---cccccCCCCcceEEEEECCCCCEEEEEecC----CeEEEEECCCCc--EEEEeeCCCC--CeEEEEEeCCCCEEEEE
Q psy11350        272 ---LANLEGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLWDLNQGQ--EVLHQEGHGK--PVYCMSFQGDGSVVATG  340 (471)
Q Consensus       272 ---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~d~~~l~t~  340 (471)
                         ...+..+.. .+.. .|+|+|..|+..+..    +.|.+||+.++.  ....+..|..  .+..++|++++.++++.
T Consensus       276 ~~~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          276 ILKWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             SCCCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             ccceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence               233333322 2333 488899988877654    369999998764  2344445544  68889999888888888


Q ss_pred             eCCCe--EEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE-e---CCCcEEEEECCCcc
Q psy11350        341 GLDAF--GRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG-S---EDNAVKIWDLRKRR  397 (471)
Q Consensus       341 ~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s---~dg~i~iwd~~~~~  397 (471)
                      ..++.  |++||+.+++.+..+..+.+.+..+.++|++..++.. +   ..++|.+||+.+++
T Consensus       354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88884  6677887888778888788889999999998766533 3   34789999999877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=3.6e-15  Score=135.89  Aligned_cols=239  Identities=7%  Similarity=-0.095  Sum_probs=168.0

Q ss_pred             CeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        154 PISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ...+++++++|++++ +.+.++.|.+|+..+.........+...+.++++.+++.     ++++.. ++.|.+||.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-----VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-----EEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-----EEEEcC-CCEEEEEeCCCce
Confidence            678899999999766 446789999999765543322223335678899999876     455544 8899999986554


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---ccc-cCCCCcceEEEEECCCCCEEEEEecCCeEEEEE
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANL-EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD  308 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  308 (471)
                      . ..+.......+..++++++|+.+++...++.+......   ... .......+.+++++++|+.+++...++.|.+||
T Consensus        99 ~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B           99 Q-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             C-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             E-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence            3 33332222368999999999977776666654432211   111 111122578899999998777766788999999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      ............+...+.+++++++|.++++...++.|.+||............+...+.+++++|+|+++++...++.|
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             cCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            98766544434444678899999999888887778899999987654433322344679999999999988998999999


Q ss_pred             EEEECCCccch
Q psy11350        389 KIWDLRKRRLL  399 (471)
Q Consensus       389 ~iwd~~~~~~~  399 (471)
                      +++++...+..
T Consensus       258 ~~~~~~~~~~~  268 (270)
T 1rwi_B          258 VKLTSLEHHHH  268 (270)
T ss_dssp             EEECCCGGGSC
T ss_pred             EEEcCCCcccc
Confidence            99999877654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=1.6e-14  Score=135.96  Aligned_cols=233  Identities=14%  Similarity=0.082  Sum_probs=165.7

Q ss_pred             eeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC----C
Q psy11350        146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD----G  221 (471)
Q Consensus       146 ~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d----g  221 (471)
                      ..+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++|+|++.     ++++...+    +
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-----l~v~~~~~~~~~~  112 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-----LFVCYLGDFKSTG  112 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-----EEEEECTTSSSCC
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-----EEEEeCCCCCCCc
Confidence            34556777889999999999888888899999999988877665545677899999999987     56666555    6


Q ss_pred             cEEEEeCCCCcceeeec-CCCCcceEEEEECCCCCEEEEEeCC------C-eEEeccc---cccccCCCCcceEEEEECC
Q psy11350        222 SVKLWSLDKDTPLANLE-GHEPFRVSRIKFHPSGRFLGTCCWD------H-SWRLDTP---LANLEGHEPFRVSRIKFHP  290 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~i~~~~~d------~-~~~~~~~---~~~~~~~~~~~v~~l~~~~  290 (471)
                      .|.+||..++.....+. ......+.++.++|+|+++++...+      + .+.+...   ...+... ...+..++|+|
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~  191 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIALST  191 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEECT
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceEECC
Confidence            89999998776543332 1223478999999999887776532      2 2433211   1111111 22478899999


Q ss_pred             CCCEEEEE-ecCCeEEEEECCC-CcEEEE--------eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        291 SGRFLGTC-CWDHSWRLWDLNQ-GQEVLH--------QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       291 ~~~~l~~~-~~dg~i~iwd~~~-~~~~~~--------~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                      +++.|+++ +.++.|.+||+.+ +..+..        +.++ ..+..++++++|+++++...++.|.+||. .++.+..+
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            99866554 4578999999964 332211        1222 46788999999998888878899999998 56666666


Q ss_pred             cccCc------CEEEEEEcCCCCEEEEEeCCC
Q psy11350        361 EGHLK------SVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       361 ~~h~~------~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      ..+..      .+.+++|+|++..|+.++.++
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            54432      689999999987776665553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=1.6e-15  Score=142.86  Aligned_cols=238  Identities=12%  Similarity=0.036  Sum_probs=168.4

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|+|++.     +++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~-----l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ-----LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC-----EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC-----EEEEECCCCEEEEEeCCCCc
Confidence            457788899998888777788999999   3566667777777889999999887     67778889999999998877


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCC----CeEEeccc---cc--ccc-CCCCcceEEEEECCCCCEEEEEec--
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLDTP---LA--NLE-GHEPFRVSRIKFHPSGRFLGTCCW--  300 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d----~~~~~~~~---~~--~~~-~~~~~~v~~l~~~~~~~~l~~~~~--  300 (471)
                      .......+. ..+.+++++|+|+++++...+    +.+.....   ..  .+. ......+..++++|+|+++++...  
T Consensus        78 ~~~~~~~~~-~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           78 IKRPFVSHK-ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             EEEEEECSS-SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred             EEEEeeCCC-CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence            554442332 379999999999988877665    34333211   11  111 112346899999999987776553  


Q ss_pred             ----CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEeCCC-CeeEE--------EecccCcC
Q psy11350        301 ----DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA-TGGLDAFGRVWDLRT-GRCIM--------FLEGHLKS  366 (471)
Q Consensus       301 ----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-t~~~dg~i~iwd~~~-~~~~~--------~~~~h~~~  366 (471)
                          .+.|..||..+++... +..+...+..++|+|+++.|+ +.+.++.|++||+.+ +..+.        .+.++ ..
T Consensus       157 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~  234 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG  234 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE
T ss_pred             ccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC
Confidence                3567777776554433 222334578999999998554 445678999999964 33221        12222 46


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       367 v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      +..++++++|+++++...++.|.+||. +++.+..+
T Consensus       235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            889999999998888888899999998 46555544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=8.8e-16  Score=145.46  Aligned_cols=219  Identities=8%  Similarity=0.042  Sum_probs=156.0

Q ss_pred             cCeEEEEEecCCCEEEEEeCC---C--cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC--------
Q psy11350        153 RPISYCSFSPDSQHVATASWS---G--LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ--------  219 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~d---g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~--------  219 (471)
                      ..+.+++|||||++||.++.+   +  .|++|++.+++.......+ . +..+.|+|++.     .|+.++.        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~-----~l~~~~~~~~~~~~~  131 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSR-----KLLIVGFKRREDEDF  131 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSS-----EEEEEEECCCC----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCC-----EEEEEEccCCCcCCc
Confidence            467889999999999987743   2  4888899888766655444 3 99999999998     5666653        


Q ss_pred             -------------------CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC-------e---EEecc
Q psy11350        220 -------------------DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-------S---WRLDT  270 (471)
Q Consensus       220 -------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~-------~---~~~~~  270 (471)
                                         ...|.+||+.+++.+..+..  . .+..+.|+|+| +++++..+.       .   +.+..
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~  207 (347)
T 2gop_A          132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED  207 (347)
T ss_dssp             -----CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred             EEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC
Confidence                               25789999988876344443  2 67899999999 777775542       2   22221


Q ss_pred             -ccccccCCCCcceEEEEECCCCCEEEEEecC--------CeEEEEECCCCcEEEEeeCCCCCeEE-EEEeCCCCEEEEE
Q psy11350        271 -PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD--------HSWRLWDLNQGQEVLHQEGHGKPVYC-MSFQGDGSVVATG  340 (471)
Q Consensus       271 -~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~t~  340 (471)
                       ....+..+  ..+..  ++|+|++|+.++.+        ..|.+||  +++.......|...+.. +.|+ |+ +++++
T Consensus       208 ~~~~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          208 GKEEKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             TEEEEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             CceEEeccC--cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence             11112222  23433  39999998887754        3688888  56555445566778886 9999 88 99999


Q ss_pred             eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcE-EEEECC
Q psy11350        341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV-KIWDLR  394 (471)
Q Consensus       341 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i-~iwd~~  394 (471)
                      +.++.++|| +.+++... +..+...|.+++|+|  .++++++.++.. .||.+.
T Consensus       280 ~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             ecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            999999999 88666543 344577899999999  677787777765 778776

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=1.9e-15  Score=158.27  Aligned_cols=193  Identities=10%  Similarity=0.064  Sum_probs=140.0

Q ss_pred             CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc----ceEEEEECCCCCEEEEEeCCCe------
Q psy11350        196 NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF----RVSRIKFHPSGRFLGTCCWDHS------  265 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~i~~~~~d~~------  265 (471)
                      ...++.|+|++.     +++++  ||+|++||+.++++...+..+...    ....+.|||||++|++++.+..      
T Consensus        18 ~~~~~~w~~dg~-----~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDHE-----YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSSE-----EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccccEECCCCc-----EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            355899999997     67775  999999999999887777766532    2345899999999999887633      


Q ss_pred             ------EEeccc-cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eCCCCCe------------
Q psy11350        266 ------WRLDTP-LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-EGHGKPV------------  325 (471)
Q Consensus       266 ------~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v------------  325 (471)
                            |++... ...+..+ ...+...+|||||+.||.+. ++.|++||+.+++..... .++...+            
T Consensus        91 ~~~~~~~d~~~~~~~~l~~~-~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEERI-PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEEETTTTEECCSSCC-CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ceEEEEEECCCCcEEEcccC-CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence                  222221 2233333 45799999999999999885 789999999887754422 2333323            


Q ss_pred             -----EEEEEeCCCCEEEEEeCCC------------------------------------eEEEEeCCC---Ce--eEEE
Q psy11350        326 -----YCMSFQGDGSVVATGGLDA------------------------------------FGRVWDLRT---GR--CIMF  359 (471)
Q Consensus       326 -----~~~~~s~d~~~l~t~~~dg------------------------------------~i~iwd~~~---~~--~~~~  359 (471)
                           .++.|||||+.|+.++.|.                                    .|++||+.+   ++  ....
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~  248 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ  248 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence                 3489999999998875321                                    588899988   73  2223


Q ss_pred             ec------ccCcCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCcc
Q psy11350        360 LE------GHLKSVFSVDFSPDGYHLATGSE----DNAVKIWDLRKRR  397 (471)
Q Consensus       360 ~~------~h~~~v~~~~~sp~~~~l~s~s~----dg~i~iwd~~~~~  397 (471)
                      +.      +|...+..++|+|||+.++....    +..|.+||+.+++
T Consensus       249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            33      37778999999999997665533    3469999999987

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=7.8e-15  Score=134.11  Aligned_cols=230  Identities=12%  Similarity=0.059  Sum_probs=176.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE  241 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  241 (471)
                      .+++|++++.++.|.+||..+|+.+..+..+. ..+.++.++|++.     +++  +.++.|..||. +++.+..+....
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-----ilv--s~~~~V~~~d~-~G~~~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-----ILF--SYSKGAKMITR-DGRELWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-----EEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-----EEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence            46789999999999999999999999998776 4788999999997     566  45788999998 899999888765


Q ss_pred             CcceEEEEECCCCCEEEEEeC-CCeEEeccccc----cc------cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC
Q psy11350        242 PFRVSRIKFHPSGRFLGTCCW-DHSWRLDTPLA----NL------EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       242 ~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~~~----~~------~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  310 (471)
                      ...+.++.+.++|+++++.+. .+.+....+..    .+      ..+ ......+.+.++|+++++...++.|..||..
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~-~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERP-HAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSG-GGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcc-cccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            457899999999999999876 44432211110    11      111 1234556789999999999999999999998


Q ss_pred             CCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC------cCEEEEEEcCCCCEEEEEeC
Q psy11350        311 QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL------KSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       311 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~~~~sp~~~~l~s~s~  384 (471)
                       ++.+..+..+. ...++.+.++|+++++++.++.|..+|..+|+.+..+..+.      ..+..++..++|.++++...
T Consensus       155 -G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~  232 (276)
T 3no2_A          155 -GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ  232 (276)
T ss_dssp             -SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred             -CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence             99888887653 45567888999999999888899999999999988886432      23788999999998888742


Q ss_pred             C--------CcEEEEEC-CCccchheec
Q psy11350        385 D--------NAVKIWDL-RKRRLLKWCT  403 (471)
Q Consensus       385 d--------g~i~iwd~-~~~~~~~~~~  403 (471)
                      .        +..+++.+ .+++.+..+.
T Consensus       233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          233 GHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             TTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             CccccccccCCceEEEECCCCCEEEEec
Confidence            1        23456666 4666655443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=2.6e-15  Score=155.21  Aligned_cols=233  Identities=12%  Similarity=0.076  Sum_probs=159.6

Q ss_pred             EEEEe--cCCCE-EEEEeC-CCcEEEEeCC--C-CceEEEeec-----CCCCEEEEEEeeCCCCCCccEEEEEeCC----
Q psy11350        157 YCSFS--PDSQH-VATASW-SGLCKLWTVP--E-CELVQTFRG-----HDCNVGAIEFHPLPSEGAVCSLASCAQD----  220 (471)
Q Consensus       157 ~~~~s--~~~~~-l~tg~~-dg~i~iwd~~--~-~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~l~s~~~d----  220 (471)
                      ...|+  |||++ |+.++. +..|++|++.  + ++ ...+..     |...+..++|+|++.     .|++++.+    
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-----~l~~~~~~~~~~  154 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-----EVWCMAEEFTGE  154 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT-----EEEEEEEEECSS
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC-----EEEEEEecccCC
Confidence            55565  99998 776654 5677777775  3 44 444554     667889999999998     68877776    


Q ss_pred             ------CcEEEEeCCC------Ccceeeec-CCCCcceEEEEECCCCCEEEEEeCCC--------eEEe---c-c----c
Q psy11350        221 ------GSVKLWSLDK------DTPLANLE-GHEPFRVSRIKFHPSGRFLGTCCWDH--------SWRL---D-T----P  271 (471)
Q Consensus       221 ------g~i~iwd~~~------~~~~~~~~-~~~~~~v~~~~~s~~~~~i~~~~~d~--------~~~~---~-~----~  271 (471)
                            ..|.+||+.+      +.. ..+. .+. ..+..++|+|||++|+.++.++        .+.+   . .    .
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred             CCCCceeEEEEEECCCCccccCCce-eEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence                  5899999987      443 3343 333 3678899999999999887654        2222   2 1    1


Q ss_pred             cccccCCCCcceEEEEECCCCCEEEEEecCC--eEEEEECCCCcEEEEeeCCCCC--------eEEEEEeCCCCEEEEEe
Q psy11350        272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDH--SWRLWDLNQGQEVLHQEGHGKP--------VYCMSFQGDGSVVATGG  341 (471)
Q Consensus       272 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s~d~~~l~t~~  341 (471)
                      ...+.......+..+.|+|+|+++++++.++  .|.+||+.+++.......+...        +.+++|+|++.++++++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence            2223332245789999999999888888888  6777777677654443333222        56789999999999998


Q ss_pred             CCCeEEEE--eCCCCeeEEEecccCcCEEEE-EEcCCCCEEEEEeCCC--cEEEEECCCccch
Q psy11350        342 LDAFGRVW--DLRTGRCIMFLEGHLKSVFSV-DFSPDGYHLATGSEDN--AVKIWDLRKRRLL  399 (471)
Q Consensus       342 ~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s~s~dg--~i~iwd~~~~~~~  399 (471)
                      . +.++||  |+.+++ +..+..|...+..+ +++++.-++++++.+.  .|.+||+.+++..
T Consensus       313 ~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          313 K-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             S-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             c-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            8 999999  655555 67777787778877 5544433444555554  4666677677643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=6.6e-16  Score=148.92  Aligned_cols=232  Identities=13%  Similarity=0.080  Sum_probs=154.2

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEE-------------------EEEeeCCCCCCccEEE
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGA-------------------IEFHPLPSEGAVCSLA  215 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~~~~~l~  215 (471)
                      ...+.|+|||++|+.++.++.|++||+.+++....+..+......                   +.|+|++.     .++
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-----~~~  157 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-----WEK  157 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-----HHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-----cee
Confidence            334789999999999998999999999988877666655442222                   23455554     233


Q ss_pred             EE-----eCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC-CCCEEEEEeCCCe-------EEec--c-ccccccCCC
Q psy11350        216 SC-----AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHS-------WRLD--T-PLANLEGHE  279 (471)
Q Consensus       216 s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~-------~~~~--~-~~~~~~~~~  279 (471)
                      .+     ..+..|.+||+.+++.......  ...+..+.|+| ++..|+..+.+..       +.+.  . ....+..+.
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  235 (396)
T 3c5m_A          158 FAEFYHTNPTCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA  235 (396)
T ss_dssp             HHHHHHTCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC
T ss_pred             eeeeccCCCcceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC
Confidence            22     3567899999988876554432  23688999999 7887777664321       2221  1 112222221


Q ss_pred             -CcceEEEEECCCCCEEEEEecC-----CeEEEEECCCCcEEEEeeCCCCCeEEEEEeC-CCCEEEEEe-----------
Q psy11350        280 -PFRVSRIKFHPSGRFLGTCCWD-----HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG-DGSVVATGG-----------  341 (471)
Q Consensus       280 -~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~-----------  341 (471)
                       ...+..+.|+|+|++|+.++.+     +.|++||+.+++........  ... +.|+| ||+++++++           
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC--------
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeecccc
Confidence             3357889999999988877654     45999999988654333221  233 89999 999888764           


Q ss_pred             -----CCCeEEEEeCCCCeeEEEecccCc-----------CEEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCcc
Q psy11350        342 -----LDAFGRVWDLRTGRCIMFLEGHLK-----------SVFSVDFSPDGYHLATGSE-DNAVKIW--DLRKRR  397 (471)
Q Consensus       342 -----~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~l~s~s~-dg~i~iw--d~~~~~  397 (471)
                           .++.|++||+.+++.. .+..+..           .+..++|+|+|+.|+.++. ++...||  |+..++
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             --CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             ccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence                 3478999999887643 3444443           2567899999998887764 4555555  444443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=7.6e-16  Score=160.02  Aligned_cols=238  Identities=10%  Similarity=-0.044  Sum_probs=163.5

Q ss_pred             cCCcCeEEEEEecCCCEEEEE-----eCCCcEEEEeCCCCceEEEeecCCCCE--EEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        150 GDTRPISYCSFSPDSQHVATA-----SWSGLCKLWTVPECELVQTFRGHDCNV--GAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg-----~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      +|+..+.+++|||||++||.+     +.+..|++||+.+++.+.  ..+...+  ..++|+|++.     .|+.++.|..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~-----~l~~~~~d~~  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSK-----GFYYEWLPTD  190 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSS-----EEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCC-----EEEEEEecCC
Confidence            577789999999999999843     344689999999988651  1111222  6899999998     6888888776


Q ss_pred             -------------EEEEeCCCCcce--eeecCCC-CcceEEEEECCCCCEEEEEeCCC----eEEecc----ccccccCC
Q psy11350        223 -------------VKLWSLDKDTPL--ANLEGHE-PFRVSRIKFHPSGRFLGTCCWDH----SWRLDT----PLANLEGH  278 (471)
Q Consensus       223 -------------i~iwd~~~~~~~--~~~~~~~-~~~v~~~~~s~~~~~i~~~~~d~----~~~~~~----~~~~~~~~  278 (471)
                                   |++|++.++...  ..+.... ...+..+.|+|||++|++++.++    .+.+..    ....+..+
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  270 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG  270 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence                         999999887632  2333222 23688999999999998887665    222221    12223333


Q ss_pred             CCcceEEEEECCCCCEEEEEec----CCeEEEEECCCCcE--EEEeeCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        279 EPFRVSRIKFHPSGRFLGTCCW----DHSWRLWDLNQGQE--VLHQEGH--GKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       279 ~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                      .. .+....+ ++|. |+..+.    ++.|.+||+.++..  ...+..+  ...+..++|+ ++.++++...|+..+||.
T Consensus       271 ~~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          271 VG-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             SS-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CC-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            22 3445556 5666 554443    57899999987653  2333333  4568888998 777888899999888876


Q ss_pred             CC-CCeeEEEeccc-CcCEEEEEEcCCCCEEEEE----eCCCcEEEEECCCccc
Q psy11350        351 LR-TGRCIMFLEGH-LKSVFSVDFSPDGYHLATG----SEDNAVKIWDLRKRRL  398 (471)
Q Consensus       351 ~~-~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~----s~dg~i~iwd~~~~~~  398 (471)
                      +. +++....+..+ .+.+..++++|++..++..    ...++|++||+.+++.
T Consensus       347 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          347 ATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            54 45566666655 6678889999998776633    2347899999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=5.7e-14  Score=132.11  Aligned_cols=225  Identities=9%  Similarity=0.056  Sum_probs=159.3

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEeCC------------------------CcEEEEeCCCCcceeeecCCCCcceEEEE
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCAQD------------------------GSVKLWSLDKDTPLANLEGHEPFRVSRIK  249 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~  249 (471)
                      -+.+.+|+++|++.     ++++...+                        ++|.+||..+++.+..+....-.....++
T Consensus        23 l~~v~~va~d~~G~-----l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           23 PGQVSGVALDSKNN-----LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS   97 (329)
T ss_dssp             CSCEEEEEECTTCC-----EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred             cCCceEEEECCCCC-----EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence            36789999999987     66666666                        47999999888887766544434789999


Q ss_pred             ECCCCCEEEEEeCCCeEEecccc------cccc--------CCCCcceEEEEECC-CCCEEEEEe-cCCeEEEEECCCCc
Q psy11350        250 FHPSGRFLGTCCWDHSWRLDTPL------ANLE--------GHEPFRVSRIKFHP-SGRFLGTCC-WDHSWRLWDLNQGQ  313 (471)
Q Consensus       250 ~s~~~~~i~~~~~d~~~~~~~~~------~~~~--------~~~~~~v~~l~~~~-~~~~l~~~~-~dg~i~iwd~~~~~  313 (471)
                      ++|+|+++++...++.+......      ..+.        ...-.....++++| ++.++++.+ .++.|++|| .+++
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence            99999988888777776554322      1111        11122588999999 787777776 689999999 5666


Q ss_pred             EEEEeeCC----------CCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCeeEEEec--ccCcCEEEEEEcCCCCEEE
Q psy11350        314 EVLHQEGH----------GKPVYCMSFQGD-GSVVATGGLDAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       314 ~~~~~~~~----------~~~v~~~~~s~d-~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~  380 (471)
                      .+..+...          -.....++++|+ +.++++...++.|++||..+++.+..+.  .+...+.+++|+| +..++
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence            66665322          234789999998 7777888889999999999898888774  4567899999999 33333


Q ss_pred             E-------EeCCCcEEEEECCCccchheecccC--CCccceeeccccceeeeec
Q psy11350        381 T-------GSEDNAVKIWDLRKRRLLKWCTQLL--PNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       381 s-------~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~  425 (471)
                      +       ...+..|++||+.+++.+..+....  .....-+++..+..+.+..
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD  309 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence            3       3345589999999999888764211  1222333445555444433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=1.7e-14  Score=136.50  Aligned_cols=219  Identities=13%  Similarity=0.107  Sum_probs=149.1

Q ss_pred             CcCeEEEEEecCCCEEEEEe---------CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC--
Q psy11350        152 TRPISYCSFSPDSQHVATAS---------WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD--  220 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--  220 (471)
                      ...+..+++  ||++|+...         .++.|++||+.+++... +    ..+..+.|+|++.     .|+.++.+  
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~-----~la~~~~~~~   81 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGK-----KIAFMRANEE   81 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSS-----EEEEEEEETT
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCC-----EEEEEEeccC
Confidence            345677788  898887642         25789999998887543 3    4678999999998     56666543  


Q ss_pred             -C--cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC---------------------------CeEEec-
Q psy11350        221 -G--SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD---------------------------HSWRLD-  269 (471)
Q Consensus       221 -g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d---------------------------~~~~~~-  269 (471)
                       +  .|.+|++.+++.........   +..+.|+|+|+.|+.++.+                           ..+.+. 
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d  158 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD  158 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred             CCcceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence             3  37788888776554443322   8899999999999888743                           112221 


Q ss_pred             --ccc--ccccCCCCcceEEEEECCCCCEEEEEecCC-------eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE
Q psy11350        270 --TPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-------SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       270 --~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  338 (471)
                        ...  ..+..  . .+..+.|+|+| ++++++.++       ...||.+.+++ ...+..+ ..+..+  +|||++|+
T Consensus       159 ~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~  230 (347)
T 2gop_A          159 TESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERIL  230 (347)
T ss_dssp             TTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEE
T ss_pred             CCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEE
Confidence              111  22222  2 57789999999 777776542       33444433544 3444444 555554  99999888


Q ss_pred             EEeCC--------CeEEEEeCCCCeeEEEecccCcCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        339 TGGLD--------AFGRVWDLRTGRCIMFLEGHLKSVFS-VDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       339 t~~~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~-~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      .++.+        ..|++||  +++.......|...+.. +.|+ ++ ++++++.++.++|| +.+++.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            77644        4688888  66655555566778886 9999 88 89999999999999 886554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=1.4e-13  Score=128.13  Aligned_cols=239  Identities=13%  Similarity=0.027  Sum_probs=167.5

Q ss_pred             cCCcCeEEEEEecCCCEEEE-------EeCCCcEEEEeCCCCceEEEee----cCCCCEEEEEEeeC-CCCCCccEEEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVAT-------ASWSGLCKLWTVPECELVQTFR----GHDCNVGAIEFHPL-PSEGAVCSLASC  217 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~t-------g~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~~~~~~l~s~  217 (471)
                      +.-....+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ +.      |..+
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~------l~v~   88 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ------LFVA   88 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE------EEEE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc------EEEE
Confidence            34456789999999988877       5668999999988877643322    14467899999998 64      5555


Q ss_pred             eCCCcEEEEeCCCCcceee-ecC---CCCcceEEEEECCCCCEEEEEeCC---------------Ce-EEecccc--ccc
Q psy11350        218 AQDGSVKLWSLDKDTPLAN-LEG---HEPFRVSRIKFHPSGRFLGTCCWD---------------HS-WRLDTPL--ANL  275 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~-~~~---~~~~~v~~~~~s~~~~~i~~~~~d---------------~~-~~~~~~~--~~~  275 (471)
                      +..+.|.+||.. ++.... ...   .....+.+++++++|+++++...+               +. +.+....  ..+
T Consensus        89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  167 (314)
T 1pjx_A           89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV  167 (314)
T ss_dssp             ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE
T ss_pred             ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEe
Confidence            555579999987 654332 221   112358899999999888777654               22 3332211  111


Q ss_pred             cCCCCcceEEEEEC----CCCCEEEEE-ecCCeEEEEECC-CCcE-----EEEeeCCC-CCeEEEEEeCCCCEEEEEeCC
Q psy11350        276 EGHEPFRVSRIKFH----PSGRFLGTC-CWDHSWRLWDLN-QGQE-----VLHQEGHG-KPVYCMSFQGDGSVVATGGLD  343 (471)
Q Consensus       276 ~~~~~~~v~~l~~~----~~~~~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~v~~~~~s~d~~~l~t~~~d  343 (471)
                      ..+ ......++|+    |+++.|+++ ..++.|.+||+. +++.     ...+..+. ..+..++++++|.++++...+
T Consensus       168 ~~~-~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          168 DTA-FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEE-ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             ccC-CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence            111 1246789999    999766655 467899999986 4432     22333343 567899999999988888888


Q ss_pred             CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCc
Q psy11350        344 AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL-ATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~  396 (471)
                      +.|.+||..+++.+..+..+...+.+++|+|+|+.| ++...++.|..|++...
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            999999998787777777676789999999999955 45556688999998753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=6.7e-14  Score=131.55  Aligned_cols=236  Identities=9%  Similarity=-0.016  Sum_probs=166.1

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      ....+.+. +++++++...++.|.+||..+++.+.++.. ......+++++++.     ++++...++.|.+||..+++.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~-----lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEK-----AYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTE-----EEEEEBSCSEEEEEETTTTEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCe-----EEEEECCCCeEEEEECCCCeE
Confidence            35666664 344455555679999999999999888864 46788999999874     455554899999999999887


Q ss_pred             eeeecCCCCc----ceEEEEECCCCCEEEEEe--CCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecC-
Q psy11350        234 LANLEGHEPF----RVSRIKFHPSGRFLGTCC--WDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWD-  301 (471)
Q Consensus       234 ~~~~~~~~~~----~v~~~~~s~~~~~i~~~~--~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-  301 (471)
                      ...+......    ....+++  ++..++++.  .++.+.+...     ...+..  ......+.++|+|++++++..+ 
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~  193 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGY  193 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBC
T ss_pred             EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCc
Confidence            7766543311    3456666  455555554  3555443211     112221  2235678999999877776655 


Q ss_pred             ---------CeEEEEECCCCcEEEEeeCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE--ecccCcCEEE
Q psy11350        302 ---------HSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF--LEGHLKSVFS  369 (471)
Q Consensus       302 ---------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~  369 (471)
                               +.|.+||..+++....+... ......++|+|+++.|+++..  .|.+||..+++....  +..+.....+
T Consensus       194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~g  271 (328)
T 3dsm_A          194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYG  271 (328)
T ss_dssp             TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEE
T ss_pred             cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEE
Confidence                     78999999998877666532 346789999999998888765  899999988875321  2222467899


Q ss_pred             EEEcC-CCCEEEEE----eCCCcEEEEECCCccchheec
Q psy11350        370 VDFSP-DGYHLATG----SEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       370 ~~~sp-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++++| ++.++++.    ..++.|.+||.. ++.+.++.
T Consensus       272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            99999 56666666    678999999998 88887764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=2.5e-12  Score=118.63  Aligned_cols=237  Identities=8%  Similarity=-0.102  Sum_probs=169.4

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe-ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF-RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .+...+.+++++++|+++++...++.|.+||.. ++..... ..+...+.++++.+++.     ++++...++.|..|+.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-----VWFTENAANKIGRITK   85 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-----EEEEETTTTEEEEECT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-----EEEeCCCCCeEEEECC
Confidence            455789999999999977776668899999987 5543322 23456789999999886     5666666788999997


Q ss_pred             CCCcceeeecC-CCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---ccc-CCCCcceEEEEECCCCCEEEEEecCCe
Q psy11350        229 DKDTPLANLEG-HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLE-GHEPFRVSRIKFHPSGRFLGTCCWDHS  303 (471)
Q Consensus       229 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~  303 (471)
                      . ++ ...+.. .....+..+++.++|..+++...++.+....+..   .+. ......+..+++.++++.+++...++.
T Consensus        86 ~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           86 K-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             T-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             C-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence            5 33 222322 1233789999999998877776665543322211   111 111345889999999987777767789


Q ss_pred             EEEEECCCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecccCcCEEEEEEcCCCCEEEE
Q psy11350        304 WRLWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF-LEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       304 i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      |..||. +++.... ...+...+.+++++++|.++++...++.|.+||. +++.... +..+...+.+++++++|+++++
T Consensus       164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            999999 6655432 3334566889999999998777777889999998 6654332 3345567999999999997777


Q ss_pred             EeCCCcEEEEECCCcc
Q psy11350        382 GSEDNAVKIWDLRKRR  397 (471)
Q Consensus       382 ~s~dg~i~iwd~~~~~  397 (471)
                      ...++.|..||. +++
T Consensus       242 ~~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNI  256 (299)
T ss_dssp             ETTTTEEEEEET-TTE
T ss_pred             ccCCceEEEECC-CCc
Confidence            667889999998 443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=3.2e-14  Score=135.51  Aligned_cols=214  Identities=12%  Similarity=0.069  Sum_probs=151.6

Q ss_pred             cCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceEEE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        153 RPISYCSFSPDSQHVATASW--SGLCKLWTVPECELVQT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .....++|+|||++|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|.+..    .+++.+.||.+.+|++.
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~----~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPR----SFMTICGDGGLLTINLG  181 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSS----EEEEEETTSSEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCe----eEEEECCCCcEEEEEEC
Confidence            45667899999999998874  58999999999988887 6532  2234667787643    68889999999999986


Q ss_pred             C-Ccceee------ecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-------ccc---------cCCCCcceEEE
Q psy11350        230 K-DTPLAN------LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-------ANL---------EGHEPFRVSRI  286 (471)
Q Consensus       230 ~-~~~~~~------~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-------~~~---------~~~~~~~v~~l  286 (471)
                      . ++....      +....  ....+.+++++..++..+.++.+......       ..+         .+..+.....+
T Consensus       182 ~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKD--DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTT--SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CCCcEeeeccccceEcCCC--CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence            5 443311      11111  11122334556666655555553332110       000         00001112237


Q ss_pred             EECCCCCEEEEEec-----------CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-
Q psy11350        287 KFHPSGRFLGTCCW-----------DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG-  354 (471)
Q Consensus       287 ~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~-  354 (471)
                      +|+|+++.++++..           .+.|.+||+.+++.+..+..+.  +.+++|+|||++|++++. +.|.+||..++ 
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            89999888887654           3589999999999999988777  899999999999998887 99999999999 


Q ss_pred             -eeEEEecccCcCEEEEEEcCCCC
Q psy11350        355 -RCIMFLEGHLKSVFSVDFSPDGY  377 (471)
Q Consensus       355 -~~~~~~~~h~~~v~~~~~sp~~~  377 (471)
                       +.+.++..+......++++|+|+
T Consensus       337 l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          337 PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ceeeEEeccCCCCcEEEEecCCCC
Confidence             99999877778899999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=7e-13  Score=121.87  Aligned_cols=203  Identities=11%  Similarity=0.148  Sum_probs=147.1

Q ss_pred             cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCC-----CCcceEEEEE-CCCCCEEEEEeC-CC
Q psy11350        192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH-----EPFRVSRIKF-HPSGRFLGTCCW-DH  264 (471)
Q Consensus       192 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~-s~~~~~i~~~~~-d~  264 (471)
                      ++-..+.++++++++.     ++++...++.|.+||.. ++.+..+...     ....+..+++ .+++..+++... ++
T Consensus        27 g~~~~p~~v~~~~~g~-----l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~  100 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQND-----IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH  100 (286)
T ss_dssp             TCBSCEEEEEECTTCC-----EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CccCCCceEEECCCCC-----EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence            3446788999999886     67777889999999986 6555555421     1136789999 577776666643 55


Q ss_pred             eEEecccc----ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeCCCCEEE
Q psy11350        265 SWRLDTPL----ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQGDGSVVA  338 (471)
Q Consensus       265 ~~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~  338 (471)
                      .+.+....    ..+.......+.+++++|+|+++++...++.|.+||.. ++.+..+.  .+...+.+++++|+|++++
T Consensus       101 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          101 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            55443221    12222223468899999999988777778999999964 55555553  3456789999999999888


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeccc--CcCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCccchheec
Q psy11350        339 TGGLDAFGRVWDLRTGRCIMFLEGH--LKSVFSVDFSPDGYHLATGSEDN-AVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       339 t~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~  403 (471)
                      +...++.|++||. .++.+..+..+  ...+.+++++|+|+++++...++ .|.+||. +++.+..+.
T Consensus       180 ~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~  245 (286)
T 1q7f_A          180 SDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  245 (286)
T ss_dssp             EEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             EECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc
Confidence            8888999999997 55666666533  36789999999999888888776 9999995 466555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=9.7e-14  Score=145.23  Aligned_cols=238  Identities=13%  Similarity=0.025  Sum_probs=159.3

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc--
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWS-----GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS--  222 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--  222 (471)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|+ .     .|+.++.++.  
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~-----~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-D-----ALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-S-----EEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-C-----EEEEEEecCccc
Confidence            455578899999999999877643     36999999999876532 12222357899999 7     5777766554  


Q ss_pred             ------------EEEEeCCCCcc--eeeecCCC-CcceEEEEECCCCCEEEEEeCCC-----eEEe---ccc----cccc
Q psy11350        223 ------------VKLWSLDKDTP--LANLEGHE-PFRVSRIKFHPSGRFLGTCCWDH-----SWRL---DTP----LANL  275 (471)
Q Consensus       223 ------------i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~i~~~~~d~-----~~~~---~~~----~~~~  275 (471)
                                  |.+|++.++..  ...+.... ...+..+.|+|||++|+..+.++     .+.+   ...    ...+
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                        88999977753  22333322 12478999999999998887654     2222   222    3344


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEecC----CeEEEEECCCC--cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLWDLNQG--QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iw  349 (471)
                      ..+.. .+... ++|+|+.|+..+.+    +.|.+||+.++  +....+..+...+..++|+ ++.++++...|+..+||
T Consensus       313 ~~~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          313 IPDLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             ECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             cCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            44433 23333 34889988887764    45999999875  3333344445556778887 66788888889887777


Q ss_pred             eCC-CCeeEEEecc-cCcCEEEEEEcCCCCEEE-EEe---CCCcEEEEECCCcc
Q psy11350        350 DLR-TGRCIMFLEG-HLKSVFSVDFSPDGYHLA-TGS---EDNAVKIWDLRKRR  397 (471)
Q Consensus       350 d~~-~~~~~~~~~~-h~~~v~~~~~sp~~~~l~-s~s---~dg~i~iwd~~~~~  397 (471)
                      .+. ++.....+.. +.+.+..+.++|++..|+ +.+   ..++|++||+.+++
T Consensus       390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            544 4556666654 357789999999887555 322   34789999998876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=2e-12  Score=129.63  Aligned_cols=197  Identities=11%  Similarity=0.022  Sum_probs=149.7

Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC--CCcceeeec
Q psy11350        161 SPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD--KDTPLANLE  238 (471)
Q Consensus       161 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~  238 (471)
                      +|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|++.     ++++++.|+.|.+||+.  +++.+..+.
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr-----~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-----YLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-----EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC-----EEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            354556677778899999999999999888753 3567999999998     78888999999999995  665555444


Q ss_pred             CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEEC----CCCCEEEEEec-CCeEEEEECCCCc
Q psy11350        239 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFH----PSGRFLGTCCW-DHSWRLWDLNQGQ  313 (471)
Q Consensus       239 ~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~~~~~-dg~i~iwd~~~~~  313 (471)
                      ...                                        ....++|+    |+|+++++++. +++|.++|..+.+
T Consensus       238 ~G~----------------------------------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          238 IGS----------------------------------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CCS----------------------------------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             cCC----------------------------------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            321                                        35788999    69998887765 5899999999998


Q ss_pred             EEEEeeCC-----------CCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCeeE--EEecccCcCEEEEEEcCCCCEE
Q psy11350        314 EVLHQEGH-----------GKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGRCI--MFLEGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       314 ~~~~~~~~-----------~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l  379 (471)
                      .+..+...           ...+..+.+++++. +++....+|.|.++|..+.+.+  ..+ ........+.|+|+|++|
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEE
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEE
Confidence            88776421           12577888898765 4455556799999998775432  222 233457789999999988


Q ss_pred             EEEe-CCCcEEEEECCCccchheecc
Q psy11350        380 ATGS-EDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       380 ~s~s-~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +++. .++.|.++|+.+++++..+..
T Consensus       357 ~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEec
Confidence            7665 578999999999998877654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=6.4e-13  Score=122.82  Aligned_cols=208  Identities=10%  Similarity=0.035  Sum_probs=146.0

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  264 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~  264 (471)
                      ..+..+..+.....+++|+|++..    +++++..++.|..|+..++  ...+..+.. .+.+++++|+|+++++...++
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~----l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~~l~~~~dg~l~v~~~~~~   90 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSA----VIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-HQNGHCLNKQGHLIACSHGLR   90 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTE----EEEEEGGGTEEEEEETTSC--EEEEESSCS-SEEEEEECTTCCEEEEETTTT
T ss_pred             CcEEEEecCCccccCCeEeCCCCE----EEEEeCCCCEEEEEECCCC--eEEEECCCC-CcceeeECCCCcEEEEecCCC
Confidence            344455555667889999999863    5778888999999999876  555554443 789999999999887776655


Q ss_pred             eEEeccc-cc---ccc----CCCCcceEEEEECCCCCEEEE----Ee-------------cCCeEEEEECCCCcEEEEee
Q psy11350        265 SWRLDTP-LA---NLE----GHEPFRVSRIKFHPSGRFLGT----CC-------------WDHSWRLWDLNQGQEVLHQE  319 (471)
Q Consensus       265 ~~~~~~~-~~---~~~----~~~~~~v~~l~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~  319 (471)
                      .+..... ..   .+.    ......+..++++|+|+++++    ++             ..+.|..++.. ++ +..+.
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~  168 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI  168 (296)
T ss_dssp             EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred             eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence            5444322 11   111    111124567999999998887    33             13466666665 43 44455


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCee---EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR-TGRC---IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       320 ~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~-~~~~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .+......++|+|+++.+++.+.++.|++|++. +++.   ...+..+...+.+++++++|+++++.  ++.|.+||.. 
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence            566778999999999988777788999999987 5544   23333455667889999999977666  7889999986 


Q ss_pred             ccchheecc
Q psy11350        396 RRLLKWCTQ  404 (471)
Q Consensus       396 ~~~~~~~~~  404 (471)
                      ++.+..+..
T Consensus       246 g~~~~~~~~  254 (296)
T 3e5z_A          246 GDELGRVLT  254 (296)
T ss_dssp             SCEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            666665543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=4.7e-13  Score=139.43  Aligned_cols=236  Identities=14%  Similarity=0.048  Sum_probs=158.2

Q ss_pred             cCCCEEEEEeCC-----CcEEEEeCCCCceEEEee------cCCCCEEEEEEeeCCCCCCccEEEEEeCC-C----cEEE
Q psy11350        162 PDSQHVATASWS-----GLCKLWTVPECELVQTFR------GHDCNVGAIEFHPLPSEGAVCSLASCAQD-G----SVKL  225 (471)
Q Consensus       162 ~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g----~i~i  225 (471)
                      |+|++++....+     +.|++.+..+++....+.      +|...+..++|+|++.     +|+.+..+ |    .|++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~-----~la~~~~~~G~~~~~i~v  155 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGE-----YFAYGLSASGSDWVTIKF  155 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSS-----EEEEEEEETTCSCEEEEE
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCC-----EEEEEEcCCCCceEEEEE
Confidence            888887755432     244555555554433222      2444688999999998     56655443 3    8999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe----------------EEe---cccc----ccccCC-CCc
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----------------WRL---DTPL----ANLEGH-EPF  281 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~----------------~~~---~~~~----~~~~~~-~~~  281 (471)
                      ||+.+++.........  .+..++|+|||+.|+.++.++.                +.+   .+..    ..+... ...
T Consensus       156 ~d~~tg~~~~~~~~~~--~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~  233 (710)
T 2xdw_A          156 MKVDGAKELPDVLERV--KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK  233 (710)
T ss_dssp             EETTTTEEEEEEEEEE--CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EECCCCCCCcccccCc--ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence            9999988765332221  3567999999999999887643                332   2221    111221 133


Q ss_pred             ceEEEEECCCCCEEEEEec-----CCeEEEEECCC------Cc-EEEEeeCCCCCeEEEEEeCCCCEEEEEeCC----Ce
Q psy11350        282 RVSRIKFHPSGRFLGTCCW-----DHSWRLWDLNQ------GQ-EVLHQEGHGKPVYCMSFQGDGSVVATGGLD----AF  345 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d----g~  345 (471)
                      .+..+.|+|+|++|+.++.     +..|++||+.+      +. ....+..+...+.. .|+|+|..|+..+..    +.
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~  312 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR  312 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence            4789999999999988765     56899999986      43 35566666666655 488888877766543    36


Q ss_pred             EEEEeCCCCe--eEEEecccCc--CEEEEEEcCCCCEEEEEeCCCc--EEEEECCCccchheeccc
Q psy11350        346 GRVWDLRTGR--CIMFLEGHLK--SVFSVDFSPDGYHLATGSEDNA--VKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       346 i~iwd~~~~~--~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~  405 (471)
                      |.+||+.++.  ....+..|..  .+..++|++++.++++...|+.  |.+||+.+++.+..+..+
T Consensus       313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~  378 (710)
T 2xdw_A          313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE  378 (710)
T ss_dssp             EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred             EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence            9999998774  2344444544  6888999988888888888885  666787777766655543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=1e-11  Score=114.38  Aligned_cols=235  Identities=7%  Similarity=-0.144  Sum_probs=162.2

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      +...+.+++++++|.++++...++.|..|+.. ++. ..+.  .....+.++++.+++.     ++++...++.|.+||.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~~i~~~d~  127 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGD-----IWFTEMNGNRIGRITD  127 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSC-----EEEEETTTTEEEEECT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCC-----EEEEecCCceEEEECC
Confidence            45678999999999988877768899999976 443 2232  3456789999999876     5666667889999998


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---cc-cCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NL-EGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                       +++............+..+++.++|..+++...++.+.......   .+ .......+.+++++++++.+++...++.|
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  206 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI  206 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence             55443322222233689999999998777766555543322211   11 11113358899999999877666668899


Q ss_pred             EEEECCCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecccCcCEEEEEEcCCCCEEEEE
Q psy11350        305 RLWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF-LEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       305 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      .+||. +++.... ...+...+.+++++++|.++++...++.|.+||. ++..... +..+...+.++++ ++|.++++.
T Consensus       207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~  283 (299)
T 2z2n_A          207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM  283 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred             EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence            99999 6654332 2334567899999999997777667889999998 4543322 3345567999999 888877766


Q ss_pred             eCCCcEEEEECCCcc
Q psy11350        383 SEDNAVKIWDLRKRR  397 (471)
Q Consensus       383 s~dg~i~iwd~~~~~  397 (471)
                      + .+.|..++.++++
T Consensus       284 ~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          284 E-CDKIGKLTLIKDN  297 (299)
T ss_dssp             T-TTEEEEEEEC---
T ss_pred             c-CCcEEEEEcCccc
Confidence            5 5677778877654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=7.2e-12  Score=125.61  Aligned_cols=237  Identities=11%  Similarity=-0.019  Sum_probs=168.1

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCC--CCceEEEeecCCCCEEEEEEe----eCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVP--ECELVQTFRGHDCNVGAIEFH----PLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .+..+.|||||++|++++.++.|.+||+.  +++.+..+.... ....++|+    |++..    ++++...+++|.++|
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~----l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKY----AIAGAYWPPQYVIMD  272 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTE----EEEEEEETTEEEEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCE----EEEEEccCCeEEEEE
Confidence            56789999999999999999999999996  888888887643 45799999    68873    445555679999999


Q ss_pred             CCCCcceeeecCC----------CCcceEEEEECCCCCEEEEEe-CCCeEEecccc-----ccccCCCCcceEEEEECCC
Q psy11350        228 LDKDTPLANLEGH----------EPFRVSRIKFHPSGRFLGTCC-WDHSWRLDTPL-----ANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       228 ~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~  291 (471)
                      ..+.+.+..+...          ....+..+..++++..+++.. ..+.+.+....     .............+.|+|+
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd  352 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS  352 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCC
Confidence            9999888776532          122677888899877655544 33553331110     0000011224668899999


Q ss_pred             CCEEEEEe-cCCeEEEEECCCCcEEEEeeC-----CCCCeEEEEEeCCCCE-EEEEe-CCCeEEEEeCCC-------Cee
Q psy11350        292 GRFLGTCC-WDHSWRLWDLNQGQEVLHQEG-----HGKPVYCMSFQGDGSV-VATGG-LDAFGRVWDLRT-------GRC  356 (471)
Q Consensus       292 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~-l~t~~-~dg~i~iwd~~~-------~~~  356 (471)
                      +++|+++. .++.|.++|+.+++.+..+..     |.+.-..+ ++|++.. ++++. .++.|.++|..+       .+.
T Consensus       353 gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence            99987766 578999999999987766543     32222222 5787544 44443 468999999987       667


Q ss_pred             EEEecccCcCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCc
Q psy11350        357 IMFLEGHLKSVFSVDFSPDGYHLATGSE-------DNAVKIWDLRKR  396 (471)
Q Consensus       357 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~-------dg~i~iwd~~~~  396 (471)
                      +.++......-..+..+|+++++.+...       .++|.++|+.+.
T Consensus       432 v~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          432 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            7887755444455789999999988763       459999999877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=8.4e-13  Score=124.00  Aligned_cols=215  Identities=9%  Similarity=-0.008  Sum_probs=152.0

Q ss_pred             CCCcEEEEeCCCCceEEEee------cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcce
Q psy11350        172 WSGLCKLWTVPECELVQTFR------GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRV  245 (471)
Q Consensus       172 ~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  245 (471)
                      .++.|.+||..+++....+.      ........+.+.. +.     ++++...++.|.+||..+++.+..+...  ...
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-----lyv~~~~~~~v~viD~~t~~~~~~i~~~--~~p   86 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GI-----GWIVVNNSHVIFAIDINTFKEVGRITGF--TSP   86 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TE-----EEEEEGGGTEEEEEETTTCCEEEEEECC--SSE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CE-----EEEEEcCCCEEEEEECcccEEEEEcCCC--CCC
Confidence            37899999999988765442      1123456777743 32     5666667899999999999988888533  368


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCC----CcceEEEEECCCCCEEEEEe--cCCeEEEEECCCCcE
Q psy11350        246 SRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHE----PFRVSRIKFHPSGRFLGTCC--WDHSWRLWDLNQGQE  314 (471)
Q Consensus       246 ~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~----~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~  314 (471)
                      ..++++++++.+++...++.+.+...     ...+....    ......+++  ++..++++.  .++.|.+||+.+++.
T Consensus        87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE
T ss_pred             cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE
Confidence            89999999854444436666444221     11111111    013456777  455565555  488999999999988


Q ss_pred             EEEeeCCCCCeEEEEEeCCCCEEEEEeCC----------CeEEEEeCCCCeeEEEeccc-CcCEEEEEEcCCCCEEEEEe
Q psy11350        315 VLHQEGHGKPVYCMSFQGDGSVVATGGLD----------AFGRVWDLRTGRCIMFLEGH-LKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       315 ~~~~~~~~~~v~~~~~s~d~~~l~t~~~d----------g~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s  383 (471)
                      +..+... .....++++|+|++++++..+          +.|.+||..+++....+... ...+..++|+|+++.|+++.
T Consensus       165 ~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          165 VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence            7777643 334688999999987777654          78999999999877666532 24689999999999988875


Q ss_pred             CCCcEEEEECCCccch
Q psy11350        384 EDNAVKIWDLRKRRLL  399 (471)
Q Consensus       384 ~dg~i~iwd~~~~~~~  399 (471)
                      .  .|.+||..+++..
T Consensus       244 ~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          244 N--DIWRMPVEADRVP  257 (328)
T ss_dssp             S--SEEEEETTCSSCC
T ss_pred             c--EEEEEECCCCcee
Confidence            5  8999999988864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=3.3e-11  Score=111.03  Aligned_cols=238  Identities=9%  Similarity=-0.130  Sum_probs=167.0

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .....+.++++.++|++.++...++.|.+||.. ++.... +..+...+.++++.+++.     ++++...++.|..||.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-----IWFTENGANKIGKLSK   90 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-----EEEEETTTTEEEEECT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-----EEEEecCCCeEEEECC
Confidence            345688999999999988777778999999987 554432 223346788999998886     5666556788999998


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc---cc-CCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN---LE-GHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~---~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      . ++............+..+++.++|..+++...++.+....+...   +. ......+.++++.++++.+++...++.|
T Consensus        91 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           91 K-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             C-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            7 55432221112247899999999988777665555433221111   11 1123468899999999966666667899


Q ss_pred             EEEECCCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecccCcCEEEEEEcCCCCEEEEE
Q psy11350        305 RLWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF-LEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       305 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      ..||. +++.... ...+...+.+++++++|.++++....+.|.+||. +++.... +..+...+.+++++++|+++++.
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence            99998 5554432 2234567889999999988877777788999998 5544332 33455678999999999977777


Q ss_pred             eCCCcEEEEECCCcc
Q psy11350        383 SEDNAVKIWDLRKRR  397 (471)
Q Consensus       383 s~dg~i~iwd~~~~~  397 (471)
                      ..++.|..||. +++
T Consensus       248 ~~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          248 WGANQIGRITN-DNT  261 (300)
T ss_dssp             TTTTEEEEECT-TSC
T ss_pred             cCCCeEEEECC-CCc
Confidence            67789999998 444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.1e-11  Score=118.10  Aligned_cols=233  Identities=9%  Similarity=-0.056  Sum_probs=156.0

Q ss_pred             EEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecC-------CCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        157 YCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGH-------DCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .++|||||++|+++.          .++.|.+||+.+++.+..+...       ......+.|+|++.     +|+.+..
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-----~l~v~n~  144 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-----DLLFFQF  144 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-----EEEEEec
Confidence            889999999999886          3678999999998888776532       12345899999998     5666653


Q ss_pred             --CCcEEEEeCCCCcceee-ecCCCCcceEEEEECCCCC-EEEEEeCCCeEEeccccc----------cccCCCCcceEE
Q psy11350        220 --DGSVKLWSLDKDTPLAN-LEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLDTPLA----------NLEGHEPFRVSR  285 (471)
Q Consensus       220 --dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~-~i~~~~~d~~~~~~~~~~----------~~~~~~~~~v~~  285 (471)
                        ++.|.++| .+++.+.. +....     ++.+.|++. .+++.+.|+.+.......          .+....+ ....
T Consensus       145 ~~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p-~~~~  217 (373)
T 2mad_H          145 AAGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQN-LLTQ  217 (373)
T ss_pred             CCCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcc-eeec
Confidence              57899999 99988777 55332     123333332 233333444322111100          0011101 1123


Q ss_pred             EEECCCCCEEEEEecCCeEEEEECCCCc--EEEEeeC----------CCCCeEEEEEeCCCCEEEEEeC----------C
Q psy11350        286 IKFHPSGRFLGTCCWDHSWRLWDLNQGQ--EVLHQEG----------HGKPVYCMSFQGDGSVVATGGL----------D  343 (471)
Q Consensus       286 l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~----------~~~~v~~~~~s~d~~~l~t~~~----------d  343 (471)
                      ..+.+++..++..+..+.+.+.|+....  .+..+.-          .......+.++|+++.++++..          .
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             ceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence            4566666665555678899999997653  2222211          1122445789999988777643          3


Q ss_pred             CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCccchhee
Q psy11350        344 AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATGS-EDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~  402 (471)
                      +.|.++|+.+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+++.+..+
T Consensus       298 ~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            5799999999999888863 34689999999999 777777 5899999999999998874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=3.1e-13  Score=140.33  Aligned_cols=260  Identities=11%  Similarity=-0.046  Sum_probs=150.3

Q ss_pred             ecCCCEEEEEeCCC-----cEEEEeCCCCceEEEee------cCCCCEEEEEEeeCCCCCCccEEE-----EEeCCCcEE
Q psy11350        161 SPDSQHVATASWSG-----LCKLWTVPECELVQTFR------GHDCNVGAIEFHPLPSEGAVCSLA-----SCAQDGSVK  224 (471)
Q Consensus       161 s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~~~~l~-----s~~~dg~i~  224 (471)
                      +|+|++++....++     .|++.+...++....+.      +|...+..++|+|++.     +|+     .|+.+..|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~-----~la~~~~~~G~~~~~i~  150 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK-----KVAFAQKPNAADEAVLH  150 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS-----EEEEEEEETTCSCCEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC-----EEEEEECCCCCceEEEE
Confidence            48899888666443     34555554555433332      3555789999999998     455     233346899


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCe-
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-  303 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-  303 (471)
                      +||+.+++.+..  .+..                                     ......++|+|||+.|+.++.|.. 
T Consensus       151 v~dl~tg~~~~~--~~~~-------------------------------------~~~~~~~~wspDg~~l~~~~~d~~~  191 (695)
T 2bkl_A          151 VIDVDSGEWSKV--DVIE-------------------------------------GGKYATPKWTPDSKGFYYEWLPTDP  191 (695)
T ss_dssp             EEETTTCCBCSS--CCBS-------------------------------------CCTTCCCEECTTSSEEEEEECCCCT
T ss_pred             EEECCCCCCcCC--cccC-------------------------------------cccccceEEecCCCEEEEEEecCCC
Confidence            999998875410  0000                                     001134666666666666666554 


Q ss_pred             ------------EEEEECCCCc----EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEeCCCCeeEEEeccc
Q psy11350        304 ------------WRLWDLNQGQ----EVLHQEGHGKPVYCMSFQGDGSVVATGGLDA----FGRVWDLRTGRCIMFLEGH  363 (471)
Q Consensus       304 ------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg----~i~iwd~~~~~~~~~~~~h  363 (471)
                                  |++|++.+++    .+.....|...+.++.|+|||++|+.++.++    .|++|+..++.. ..+..+
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~  270 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKG  270 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEEC
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecC
Confidence                        9999999876    3333344566789999999999988877666    678887665543 344456


Q ss_pred             CcCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCccc--hheecccCCC-ccceeeccccceeeeecccCCCcccccch
Q psy11350        364 LKSVFSVDFSPDGYHLATGS---EDNAVKIWDLRKRRL--LKWCTQLLPN-SIGVTSLLTDLYIDVLESLNPGIGNIISS  437 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s---~dg~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  437 (471)
                      ...+....| ++|.+++++.   .++.|.+||+.++..  ...+....+. .+.-+++. +..+.+... ..+...+...
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~  347 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL-KDATSEVRVA  347 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE-ETTEEEEEEE
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE-ECCEEEEEEE
Confidence            566666667 5666444443   257899999988764  2233322211 12222222 333322222 2222222111


Q ss_pred             h-hhccccccee--eecccceeeeecCCeEEEee
Q psy11350        438 A-LKEQVEPIPL--LLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       438 ~-~~~~~~~~~~--~~~~~~l~fs~dg~~lA~~~  468 (471)
                      . .+.....+..  ...+..++++|||+.+++..
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence            1 1112222322  22356778889998877654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.55  E-value=1e-12  Score=123.96  Aligned_cols=240  Identities=15%  Similarity=0.082  Sum_probs=160.9

Q ss_pred             EEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecCC-------CCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        157 YCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGHD-------CNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .++++|||++|++++          .++.|.+||..+++.+..+....       .....+.|+|++.     .++.+..
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-----~lyVan~  156 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-----TLLFYQF  156 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-----EEEEEEC
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-----EEEEEEc
Confidence            399999999988775          36789999999999988875321       2345799999998     5666653


Q ss_pred             --CCcEEEEeCCCCcceeeecCCCCcceE------EEEECCCCCEEEEEeCC-CeEEeccccccccCCCCcce-EEEEEC
Q psy11350        220 --DGSVKLWSLDKDTPLANLEGHEPFRVS------RIKFHPSGRFLGTCCWD-HSWRLDTPLANLEGHEPFRV-SRIKFH  289 (471)
Q Consensus       220 --dg~i~iwd~~~~~~~~~~~~~~~~~v~------~~~~s~~~~~i~~~~~d-~~~~~~~~~~~~~~~~~~~v-~~l~~~  289 (471)
                        ++.|.++|+.+++.+..+.......+.      -++.++||+++++.... +.+.. .....+. ....++ ....|.
T Consensus       157 ~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~-~~~~~~~~~~~~~  234 (386)
T 3sjl_D          157 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFH-PEDEFLINHPAYS  234 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCS-CTTSCBCSCCEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceec-cccccccccceeE
Confidence              689999999999988887543211111      12556666666555543 33211 0001111 101112 123554


Q ss_pred             -CCCCEEEEEecCCeEEEEECCCCcE--EEEee---------C-CCCCeEEEEEeCCCCEEEEEeC----------CCeE
Q psy11350        290 -PSGRFLGTCCWDHSWRLWDLNQGQE--VLHQE---------G-HGKPVYCMSFQGDGSVVATGGL----------DAFG  346 (471)
Q Consensus       290 -~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------~-~~~~v~~~~~s~d~~~l~t~~~----------dg~i  346 (471)
                       ++|++++ .+.+|+|++.|+.+...  +..+.         + .......++++++++.++....          .+.|
T Consensus       235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence             5775544 56689999999976542  22221         0 1122335777999988887643          2579


Q ss_pred             EEEeCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEE-eCCCcEEEEECCCccchheeccc
Q psy11350        347 RVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATG-SEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       347 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      .++|+.+++.+..+..- ..+.+|+++||++ +|+++ ..++.|.++|..+++.+.++...
T Consensus       314 ~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          314 VVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            99999999999887632 4788999999986 66665 45899999999999999988754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=1.1e-11  Score=114.59  Aligned_cols=224  Identities=11%  Similarity=0.036  Sum_probs=155.5

Q ss_pred             CCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        151 DTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       151 h~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      +..-..+..|+|++. ++++...++.|..||..+++.. .+. ....+.++++++++.     ++ .+. ++.|.+||..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~-----l~-v~~-~~~l~~~d~~   81 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGG-----YV-ATI-GTKFCALNWK   81 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSS-----EE-EEE-TTEEEEEETT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCC-----EE-EEE-CCeEEEEECC
Confidence            444566889999655 5556667899999999877653 332 357899999999987     34 444 5689999998


Q ss_pred             CCcceeeecC---CCCcceEEEEECCCCCEEEEEeCC-----------C-eEEeccc--cccccCCCCcceEEEEECCCC
Q psy11350        230 KDTPLANLEG---HEPFRVSRIKFHPSGRFLGTCCWD-----------H-SWRLDTP--LANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       230 ~~~~~~~~~~---~~~~~v~~~~~s~~~~~i~~~~~d-----------~-~~~~~~~--~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      +++.......   .....+..++++|+|+++++....           + .+++...  ...+... ......++|+|++
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-~~~pngi~~spdg  160 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-VDISNGLDWSLDH  160 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-ESBEEEEEECTTS
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-cccccceEEcCCC
Confidence            7764333222   122358899999999976654322           1 2333211  1111111 2246789999999


Q ss_pred             CEEEEE-ecCCeEEEEEC--CCCcE-----EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        293 RFLGTC-CWDHSWRLWDL--NQGQE-----VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       293 ~~l~~~-~~dg~i~iwd~--~~~~~-----~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      +.|+.+ +.++.|.+||+  .++..     +..+..+......++++++|++.++....+.|.+||..+++.+..+..+.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            977554 55789999997  45543     12223334567899999999988888888899999999999998888777


Q ss_pred             cCEEEEEEc-CCCCEEEEEeC
Q psy11350        365 KSVFSVDFS-PDGYHLATGSE  384 (471)
Q Consensus       365 ~~v~~~~~s-p~~~~l~s~s~  384 (471)
                      ..+++++|. |+++.|+.++.
T Consensus       241 ~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SBEEEEEEESGGGCEEEEEEB
T ss_pred             CCceEEEEeCCCCCEEEEEcC
Confidence            789999998 88877765553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=1.5e-12  Score=118.79  Aligned_cols=187  Identities=12%  Similarity=0.128  Sum_probs=145.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEEE
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIKF  288 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~~  288 (471)
                      +|++++.++.|.+||..+++.+..+..+....+.++.++|+|+++++  .++.+....+    +..+..+....+.++.+
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~   84 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITRDGRELWNIAAPAGCEMQTARI   84 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECTTSCEEEEEECCTTCEEEEEEE
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECCCCCEEEEEcCCCCccccccEE
Confidence            78999999999999999999999988765346889999999998883  3333322211    11222222346888999


Q ss_pred             CCCCCEEEEEec-CCeEEEEECCCCcEEEEee------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        289 HPSGRFLGTCCW-DHSWRLWDLNQGQEVLHQE------GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       289 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      .|+|+++++.+. ++.|..+|. +++.+..+.      .+......+++.++|+++++...++.|.+||.. |+.+.++.
T Consensus        85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~  162 (276)
T 3no2_A           85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK  162 (276)
T ss_dssp             CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE
Confidence            999999999887 788888886 677766653      122234566789999999999999999999987 99988887


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        362 GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       362 ~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      .+ ..+.++...++|+++++++.++.|..+|..+++.+..+..
T Consensus       163 ~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          163 LS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             CS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             CC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            54 4566788899999999999888999999999999887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=2.1e-13  Score=129.18  Aligned_cols=172  Identities=14%  Similarity=-0.013  Sum_probs=129.9

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECE-----------LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      +++.+++++...+|++|+.+ .+++|++.+..           ..... .+.. |++++|  ++.     +|+++ .++.
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-----~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-----QVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-----EEEEE-ESSE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-----EEEEE-cCCc
Confidence            68999999999999999976 55669875433           11222 3556 999999  665     67777 8899


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      |++||+.+.........+.                                       ..+.++.+.+.  .+++++.||
T Consensus       108 l~v~dv~sl~~~~~~~~~~---------------------------------------~~v~~i~~~~p--~~av~~~dG  146 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFE---------------------------------------KPVFQLKNVNN--TLVILNSVN  146 (388)
T ss_dssp             EEEEESSSTTCEEEEEECS---------------------------------------SCEEEEEECSS--EEEEEETTS
T ss_pred             EEEEEchhhhccCccceee---------------------------------------cceeeEEecCC--CEEEEECCC
Confidence            9999997765433332221                                       13556666544  388899999


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee--EEEe------c---ccCcCEEEEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC--IMFL------E---GHLKSVFSVD  371 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~~~  371 (471)
                      .|.+||+.++....    +...|+|++|||+|  ++.|..||.+++|+...+..  ..++      .   +|...|.+|.
T Consensus       147 ~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~  220 (388)
T 1xip_A          147 DLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT  220 (388)
T ss_dssp             EEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred             CEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence            99999999887643    44589999999999  67889999999999887775  5555      2   4778899999


Q ss_pred             EcCCCCEEEEEe
Q psy11350        372 FSPDGYHLATGS  383 (471)
Q Consensus       372 ~sp~~~~l~s~s  383 (471)
                      |.+++.++++-+
T Consensus       221 wl~~~~flv~y~  232 (388)
T 1xip_A          221 ILSPQDFLAVFG  232 (388)
T ss_dssp             ESSSSEEEEEEE
T ss_pred             EecCCeEEEEEc
Confidence            999999888743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=1.7e-11  Score=114.95  Aligned_cols=221  Identities=14%  Similarity=0.019  Sum_probs=150.3

Q ss_pred             CeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        154 PISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       154 ~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      -..+..|+|++. ++++...++.|.+||..+++.. .+. ....+.+++|.|++.     +++ ++.+ .|.+||..+++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~-----l~v-~~~~-gl~~~d~~~g~  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSK-----QLI-ASDD-GLFLRDTATGV  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE-----EEE-EETT-EEEEEETTTCC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCe-----EEE-EECC-CEEEEECCCCc
Confidence            456789999855 4556667889999999877543 333 346799999999986     444 4444 49999998776


Q ss_pred             ceeeecC---CCCcceEEEEECCCCCEEEEEeCC-------CeEEeccc-cccccCCCCcceEEEEECCCCCEEEEE-ec
Q psy11350        233 PLANLEG---HEPFRVSRIKFHPSGRFLGTCCWD-------HSWRLDTP-LANLEGHEPFRVSRIKFHPSGRFLGTC-CW  300 (471)
Q Consensus       233 ~~~~~~~---~~~~~v~~~~~s~~~~~i~~~~~d-------~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~  300 (471)
                      .......   .....+.++.++|+|+++++...+       +.+.+... ...+... ......++|+|+++.++.+ +.
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETT
T ss_pred             EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCC-CcccCCeEEcCCCCEEEEEECC
Confidence            5433221   112368899999999977655421       22443311 1111111 1246789999999877655 45


Q ss_pred             CCeEEEEECC--CC-c-----EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        301 DHSWRLWDLN--QG-Q-----EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       301 dg~i~iwd~~--~~-~-----~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      ++.|.+||+.  ++ .     .+..+.........++++++|.++++...++.|.+||. +++.+..+..+...+++++|
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence            6899999986  55 3     12223333456788999999998887777789999998 67777777767678999999


Q ss_pred             c-CCCCEEEEEeCC
Q psy11350        373 S-PDGYHLATGSED  385 (471)
Q Consensus       373 s-p~~~~l~s~s~d  385 (471)
                      + |++..|+.++..
T Consensus       279 ~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          279 IGPDASRLLVTSAR  292 (326)
T ss_dssp             ESTTSCEEEEEEBC
T ss_pred             ecCCCCEEEEEecC
Confidence            8 888777555433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=2e-12  Score=124.12  Aligned_cols=239  Identities=13%  Similarity=0.016  Sum_probs=165.3

Q ss_pred             EEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecC-------CCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        157 YCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGH-------DCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .++++|||++|+++.          .++.|.++|..+++.+..+...       ......+.|+|++.     +++.+..
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-----~lyV~n~  196 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-----NLLFYQF  196 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-----EEEEEEC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-----EEEEEec
Confidence            799999999988876          3678999999999998887532       12345789999998     5666653


Q ss_pred             --CCcEEEEeCCCCcceeeecCCCCcc------eEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCC
Q psy11350        220 --DGSVKLWSLDKDTPLANLEGHEPFR------VSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       220 --dg~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~  291 (471)
                        ++.|.+.|+.+++.+..+.......      -..+.++++|+.+++...++.+..... ..+..........+.|.++
T Consensus       197 ~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~p~~~~~~~~~d  275 (426)
T 3c75_H          197 SPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDELLINHPAFSLR  275 (426)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTSCBCSCCEECTT
T ss_pred             CCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCCceeeEeeecCC
Confidence              6889999999999888776532100      112456666666655554443221000 1111110101123577999


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEE--EeeC----------CCCCeEEEEEeCCCCEEEEEeC----------CCeEEEE
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVL--HQEG----------HGKPVYCMSFQGDGSVVATGGL----------DAFGRVW  349 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~----------~~~~v~~~~~s~d~~~l~t~~~----------dg~i~iw  349 (471)
                      +..++..+..+.|.+.|+.......  .+.-          .......++++|+++.+++...          ++.|.++
T Consensus       276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence            9888888889999999987654221  1110          0011223689999887777642          3579999


Q ss_pred             eCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCccchhee
Q psy11350        350 DLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATGS-EDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       350 d~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~  402 (471)
                      |+.+.+.+.++... ....+++|+|||+ +++++. .++.|.++|+.+++.++++
T Consensus       356 D~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          356 NAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999999888643 3589999999999 888887 5899999999999999887

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=9.4e-12  Score=120.33  Aligned_cols=231  Identities=10%  Similarity=0.029  Sum_probs=159.5

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--cEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--SVKLWSLDK  230 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~  230 (471)
                      .....++|+++++++++...++.|++||..++...........+ . ++|+|++.     .|+++..++  .|.+|+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~-----~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQ-----RVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSS-----EEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCC-----cEEEEecCCCceEEEEEcCC
Confidence            46789999999997777777899999999887776655543333 3 99999987     677777766  788888766


Q ss_pred             Ccceeee---cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---cc-cc-----cCCCCcc-eEEEEECCC-CCEEE
Q psy11350        231 DTPLANL---EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---LA-NL-----EGHEPFR-VSRIKFHPS-GRFLG  296 (471)
Q Consensus       231 ~~~~~~~---~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---~~-~~-----~~~~~~~-v~~l~~~~~-~~~l~  296 (471)
                      +.....+   .......+.+++++|++..|+++..++.+.....   .. .+     .+..... ...++|+|+ +.+++
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            5543333   1212336788999996666666666665433211   11 11     1111111 129999995 55555


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCC---------------CCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEe
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHG---------------KPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~  360 (471)
                      +-..++.|+.|+....  +..+.++.               .....++++|+|.++++-. .++.|+.|++.++.. .++
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~  360 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV  360 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE
T ss_pred             EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE
Confidence            5566789999997643  33333322               3478999999999888877 889999999878764 344


Q ss_pred             ccc---------------CcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        361 EGH---------------LKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       361 ~~h---------------~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      .++               -.....++++|+|.++++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            443               246899999999888888888888988775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=5e-12  Score=131.10  Aligned_cols=236  Identities=14%  Similarity=0.077  Sum_probs=155.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCceEEE-eecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS-----WSGLCKLWTVPECELVQT-FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--  221 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~-----~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--  221 (471)
                      +|...+..++|||||++||.+.     ....|++||+.+++.+.. +..  .....++|+ ++.     .|+.++.+.  
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~-----~l~y~~~~~~~  197 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNE-----GFFYSSYDKPD  197 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTT-----EEEEEESSCCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCC-----EEEEEEecCcc
Confidence            5677899999999999988543     235799999999986543 221  112477899 887     577777664  


Q ss_pred             -----------cEEEEeCCCCcc--eeeecCCC--CcceEEEEECCCCCEEEEEeCCC----eEEec---c---cccccc
Q psy11350        222 -----------SVKLWSLDKDTP--LANLEGHE--PFRVSRIKFHPSGRFLGTCCWDH----SWRLD---T---PLANLE  276 (471)
Q Consensus       222 -----------~i~iwd~~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~i~~~~~d~----~~~~~---~---~~~~~~  276 (471)
                                 .|.+|++.++..  ...+....  ...+..+.|+|||++++.....+    .+.+.   .   ....+.
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                       399999987653  22333322  22477899999999887665432    23221   1   123333


Q ss_pred             CCCCcceEEEEECCCCCEEEEEec-C---CeEEEEECCCCcE--EEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---eEE
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCCW-D---HSWRLWDLNQGQE--VLHQEGHGKPVYCMSFQGDGSVVATGGLDA---FGR  347 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg---~i~  347 (471)
                      .+.. ..... |+++|..|+..+. +   +.|..+|+.++..  ...+..|...+.  .|+++++.|+....++   .|+
T Consensus       278 ~~~~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          278 GDLD-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             CSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             CCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            3322 23333 6666776665543 2   6799999988654  345566666665  8899888877766544   689


Q ss_pred             EEeCCCCeeEEEec-ccCcCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCccc
Q psy11350        348 VWDLRTGRCIMFLE-GHLKSVFSVDFSPDGYHLATGSED----NAVKIWDLRKRRL  398 (471)
Q Consensus       348 iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~~~  398 (471)
                      +||+..+. ...+. .+.+.+..+.++|++..|+....+    ++|..||+.+++.
T Consensus       354 ~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          354 QFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            99987554 34443 344567888888887766554444    7899999987753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=2.3e-10  Score=105.34  Aligned_cols=233  Identities=8%  Similarity=-0.135  Sum_probs=158.5

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE-EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ-TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      +...+.+++++++|.++++...++.|..||.. ++... .+......+.++++.+++.     ++++...++.|..||..
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-----IWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-----EEEEETTTTEEEEECTT
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-----EEEEccCCCeEEEECCC
Confidence            34678899999999877777667899999987 55432 2222346789999998876     56666667899999986


Q ss_pred             CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---cccC-CCCcceEEEEECCCCCEEEEEecCCeEE
Q psy11350        230 KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLEG-HEPFRVSRIKFHPSGRFLGTCCWDHSWR  305 (471)
Q Consensus       230 ~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~  305 (471)
                       ++............+..+++.++|+.+++...++.+.......   .+.. .....+.++++.++++.+++....+.|.
T Consensus       134 -g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          134 -GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence             5544222222233789999999999666655455433322111   1111 1123588999999998776666677899


Q ss_pred             EEECCCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE-EecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        306 LWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM-FLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       306 iwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      +||. +++.... ...+...+.+++++++|+++++...++.|..||. +++... .+......+.++++.++|.++++..
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence            9998 5544332 3334567889999999997777767789999998 454332 2333456788999999998666654


Q ss_pred             CCCcEEEEECC
Q psy11350        384 EDNAVKIWDLR  394 (471)
Q Consensus       384 ~dg~i~iwd~~  394 (471)
                       . .|..+|.+
T Consensus       291 -~-~i~~~~p~  299 (300)
T 2qc5_A          291 -C-KIGKLNLN  299 (300)
T ss_dssp             -S-EEEEEEEC
T ss_pred             -C-ceEEeCCC
Confidence             4 67666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=1.6e-11  Score=115.85  Aligned_cols=287  Identities=13%  Similarity=0.015  Sum_probs=190.7

Q ss_pred             EecCCCEEEEEeC-----CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe----------CCCcEE
Q psy11350        160 FSPDSQHVATASW-----SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA----------QDGSVK  224 (471)
Q Consensus       160 ~s~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~  224 (471)
                      ..|+++.+++...     ++.|.+.|..+++.+..+.....+ . +.++|++..     ++.++          .++.|.
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~-----lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSF-----IAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSC-----EEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCE-----EEEEcccccccccCCCCCEEE
Confidence            4789999988876     679999999999999998865566 4 999999984     54443          467899


Q ss_pred             EEeCCCCcceeeecCCC------CcceEEEEECCCCCEEEEEeC--CCeEEe---cc--ccccccCCCCcceEEEEECCC
Q psy11350        225 LWSLDKDTPLANLEGHE------PFRVSRIKFHPSGRFLGTCCW--DHSWRL---DT--PLANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~i~~~~~--d~~~~~---~~--~~~~~~~~~~~~v~~l~~~~~  291 (471)
                      +||..+++.+..+....      ......+.|+|||++++++..  ++.+.+   .+  ....+...  + . ...+...
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g  188 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTA  188 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCC
Confidence            99999999888775322      124667999999999988864  455433   11  12222211  1 1 2223334


Q ss_pred             CCEEEEEecCCeEEEEECCC-CcEEEEeeCC----CCCeE-EEEEe-CCCCEEEEEeCCCeEEEEeCCCCe--eEEEec-
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQ-GQEVLHQEGH----GKPVY-CMSFQ-GDGSVVATGGLDAFGRVWDLRTGR--CIMFLE-  361 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~~s-~d~~~l~t~~~dg~i~iwd~~~~~--~~~~~~-  361 (471)
                      .+.+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++|++++ .+.+|.|++.|+.++.  .+..+. 
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~  267 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA  267 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence            56777888899999999876 5543222111    12222 24665 5776655 4558999999997654  222221 


Q ss_pred             --------c-cCcCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCccchheecccCCCccceeeccccceee
Q psy11350        362 --------G-HLKSVFSVDFSPDGYHLATGSE----------DNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYID  422 (471)
Q Consensus       362 --------~-h~~~v~~~~~sp~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  422 (471)
                              + ..+....++++|+++.++....          .+.|.+.|+.+++.+..+....  ...-+.++.|....
T Consensus       268 ~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~  345 (386)
T 3sjl_D          268 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPL  345 (386)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCE
T ss_pred             cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeE
Confidence                    0 1123345778999888877643          2579999999999999887543  34456667776533


Q ss_pred             eec-ccCCCcccccchhhhcccccceeeecccceeeeec
Q psy11350        423 VLE-SLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFD  460 (471)
Q Consensus       423 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~d  460 (471)
                      ++. ....+...++.......+..++.......|.+++|
T Consensus       346 ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          346 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            333 33345555677777777788888878888999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.43  E-value=6.3e-11  Score=107.55  Aligned_cols=196  Identities=8%  Similarity=-0.051  Sum_probs=135.7

Q ss_pred             CEEEEEEeeCCCCCCccEEE-EEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc--
Q psy11350        196 NVGAIEFHPLPSEGAVCSLA-SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL--  272 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~--  272 (471)
                      ...++++.+++.     +++ +.+.++.|.+|+..+..... +.......+.+++++++|+.+++.. ++.+......  
T Consensus        25 ~p~~i~~~~~g~-----l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~   97 (270)
T 1rwi_B           25 SPSGVAVDSAGN-----VYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN   97 (270)
T ss_dssp             CEEEEEECTTCC-----EEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred             CccceEECCCCC-----EEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence            677999999886     565 44678999999976554322 2222223678899999999666655 6554442221  


Q ss_pred             --ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy11350        273 --ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       273 --~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd  350 (471)
                        ..+.......+.+++++++|+.+++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||
T Consensus        98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B           98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence              112112124688999999999777777788999998766544433333334678899999999888777788999999


Q ss_pred             CCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        351 LRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      ............+...+.+++++++|.++++...++.|.+||......
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            887765544334446789999999998888877889999999876543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.43  E-value=3.8e-11  Score=111.41  Aligned_cols=227  Identities=10%  Similarity=-0.012  Sum_probs=151.7

Q ss_pred             ecCCcCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        149 VGDTRPISYCSFSPDSQ-HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+........|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+++.+++.     ++++...++.|.+|+
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-----l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-----LVHCEHGRRAITRSD  113 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-----EEEEETTTTEEEEEC
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-----EEEEECCCCEEEEEC
Confidence            34556678899999998 5667777899999997 555 445555677899999999987     454444557899999


Q ss_pred             CCCCcceeee---cCCCCcceEEEEECCCCCEEEE----EeC--------------CCeEEecc---ccccccCCCCcce
Q psy11350        228 LDKDTPLANL---EGHEPFRVSRIKFHPSGRFLGT----CCW--------------DHSWRLDT---PLANLEGHEPFRV  283 (471)
Q Consensus       228 ~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~i~~----~~~--------------d~~~~~~~---~~~~~~~~~~~~v  283 (471)
                      .. ++.....   .......+..+++.|+|+++++    +..              .+.+.+..   ....+. . ....
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~~~p  190 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-LDHP  190 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-ESSE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-CCCC
Confidence            85 5432221   1111224678999999998886    332              11233321   111121 1 2346


Q ss_pred             EEEEECCCCCEEEEEecC------CeEEEEECCCCcEE--EEe-eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy11350        284 SRIKFHPSGRFLGTCCWD------HSWRLWDLNQGQEV--LHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG  354 (471)
Q Consensus       284 ~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~  354 (471)
                      ..++|+|+++.|+++...      +.|.+|++..+...  ..+ .........++++++|++.++. .+ .|.+|+. .+
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CC
Confidence            789999999988887765      78999998765411  111 1123345578999999955444 44 4999997 57


Q ss_pred             eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEE
Q psy11350        355 RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       355 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~  389 (471)
                      +.+..+..+. .+.+++|+|+++.|+.++.++..+
T Consensus       268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            7777776554 588999999998888887765433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=1.7e-11  Score=128.24  Aligned_cols=233  Identities=16%  Similarity=0.066  Sum_probs=147.7

Q ss_pred             ecCCCEEEEEeCCCc---EEEE--eCC---CCceEEEe------ecCCCCEEEEEEeeCCCCCCccEEEEEeCC-C----
Q psy11350        161 SPDSQHVATASWSGL---CKLW--TVP---ECELVQTF------RGHDCNVGAIEFHPLPSEGAVCSLASCAQD-G----  221 (471)
Q Consensus       161 s~~~~~l~tg~~dg~---i~iw--d~~---~~~~~~~~------~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g----  221 (471)
                      +|+|++++....++.   -.+|  +..   .++....+      .+|...+..++|+|++.     .|+.++.+ |    
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-----~la~~~~~~G~e~~  189 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-----LLAYSVQDGGSDWR  189 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-----EEEEEEEETTCSEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-----EEEEEEcCCCCceE
Confidence            489998886654432   4445  443   34333322      12334688999999998     56655433 3    


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--------------EEe---cccc----ccccCC-C
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--------------WRL---DTPL----ANLEGH-E  279 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--------------~~~---~~~~----~~~~~~-~  279 (471)
                      .|++||+.+++.+.....  ...+..++|+|| +.|+.++.+..              +.+   .+..    ..+... .
T Consensus       190 ~i~v~dl~tg~~~~~~~~--~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~  266 (741)
T 1yr2_A          190 TVKFVGVADGKPLADELK--WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL  266 (741)
T ss_dssp             EEEEEETTTCCEEEEEEE--EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEECCCCCCCCccCC--CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence            599999999887543111  112357899999 99988876643              222   1111    111221 1


Q ss_pred             CcceEEEEECCCCCEEEEEecCC-----eEEEEECCCC--cEEEEeeCCCCCeEEEEEeCCCCEEEEEeC----CCeEEE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDH-----SWRLWDLNQG--QEVLHQEGHGKPVYCMSFQGDGSVVATGGL----DAFGRV  348 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~----dg~i~i  348 (471)
                      ...+..+.|+|||++|+..+.++     .|++||+.++  +....+..+...+.... +|+|..|+..+.    ++.|.+
T Consensus       267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~  345 (741)
T 1yr2_A          267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVR  345 (741)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEE
T ss_pred             CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEE
Confidence            22478999999999998877554     8999999876  31445555555555553 488888887765    345999


Q ss_pred             EeCCCC--eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC-Cccchheec
Q psy11350        349 WDLRTG--RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR-KRRLLKWCT  403 (471)
Q Consensus       349 wd~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~  403 (471)
                      ||+.++  .....+..+...+..+.|+ ++.++++...|+..+||.+. +++.+..+.
T Consensus       346 ~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~  402 (741)
T 1yr2_A          346 VDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS  402 (741)
T ss_dssp             EECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB
T ss_pred             EeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc
Confidence            999874  3344444555567788887 66788888899987777554 355444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=1.1e-09  Score=104.44  Aligned_cols=271  Identities=8%  Similarity=-0.081  Sum_probs=169.2

Q ss_pred             EecCCCEEEEEeC--CC---cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe----------CCCcEE
Q psy11350        160 FSPDSQHVATASW--SG---LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA----------QDGSVK  224 (471)
Q Consensus       160 ~s~~~~~l~tg~~--dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~  224 (471)
                      ..|+++++++...  .+   .|.+||..+++.+..+.....+  .++++|++.     .++.+.          .++.|.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~-----~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS-----EFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCC-----EEEEEeccccccccCCCCCeEE
Confidence            3477877776653  22   8899999999998888754444  999999998     466554          367899


Q ss_pred             EEeCCCCcceeeecCC-C-----CcceEEEEECCCCCEEEEEeCC--CeEEeccccccccCC-CCcceEEEEECCCC-CE
Q psy11350        225 LWSLDKDTPLANLEGH-E-----PFRVSRIKFHPSGRFLGTCCWD--HSWRLDTPLANLEGH-EPFRVSRIKFHPSG-RF  294 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~-~-----~~~v~~~~~s~~~~~i~~~~~d--~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~-~~  294 (471)
                      +||..+.+.+..+... .     ......+.|+|||++++++...  +.+.+......+... .+.+ .++.+.|++ +.
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~~-~~~~~~~~~~~~  179 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP-TCYHIHPGAPST  179 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCCC-ceEEEEeCCCce
Confidence            9999988877766543 1     1134589999999999988743  443332222221111 1111 234455655 45


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEee-----CCCCCe-EEEEEeCCCCEEEEEeCCCeEEEEeCCCCe--eEEEecc----
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQE-----GHGKPV-YCMSFQGDGSVVATGGLDAFGRVWDLRTGR--CIMFLEG----  362 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~----  362 (471)
                      +++.+.||.+.++|. +++.+....     ....++ ....+.+++..++..+..+.+.+.|+.++.  .+..+..    
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence            667778999999999 877663321     112222 235667766554444578899999987652  2222211    


Q ss_pred             ------cCcCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCccchheecccCCCccceeeccccceeeeecc
Q psy11350        363 ------HLKSVFSVDFSPDGYHLATGSE----------DNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLES  426 (471)
Q Consensus       363 ------h~~~v~~~~~sp~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  426 (471)
                            .......++++|+++.++.+..          .+.|.++|+.+++.+.++...  .....+.++.|....++..
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEE
Confidence                  1122445789999888877653          357999999999999888533  2345556666766333333


Q ss_pred             c-CCCcccccchhhhc
Q psy11350        427 L-NPGIGNIISSALKE  441 (471)
Q Consensus       427 ~-~~~~~~~~~~~~~~  441 (471)
                      . ..+...++......
T Consensus       337 ~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          337 SAGTEVLHIYDAGAGD  352 (373)
T ss_pred             cCCCCeEEEEECCCCC
Confidence            2 33434444433333

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=1.7e-10  Score=107.10  Aligned_cols=203  Identities=9%  Similarity=-0.006  Sum_probs=136.0

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEE-------EeCCCcEEEEeCCCCcceeeecC---CCCcceEEEEECCC-CCEEEEEeC
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLAS-------CAQDGSVKLWSLDKDTPLANLEG---HEPFRVSRIKFHPS-GRFLGTCCW  262 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~s~~-~~~i~~~~~  262 (471)
                      -....+++|.+++.     ++++       +..++.|.+||..+++.......   .....+..++++++ |+.+++...
T Consensus        17 ~~~~~~~~~~~~g~-----l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~   91 (314)
T 1pjx_A           17 IPGAEGPVFDKNGD-----FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             CTTCEEEEECTTSC-----EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             CCCccCceECCCCC-----EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence            34567999998876     5556       46789999999877765432220   01126889999999 765555544


Q ss_pred             CCeEEeccc--cccc-c----CCCCcceEEEEECCCCCEEEEEecC---------------CeEEEEECCCCcEEEEeeC
Q psy11350        263 DHSWRLDTP--LANL-E----GHEPFRVSRIKFHPSGRFLGTCCWD---------------HSWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       263 d~~~~~~~~--~~~~-~----~~~~~~v~~l~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~  320 (471)
                      ++.+.+...  ...+ .    ......+.+++++++|+++++...+               +.|..||.. ++... +..
T Consensus        92 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~  169 (314)
T 1pjx_A           92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDT  169 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEE
T ss_pred             CCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ecc
Confidence            444333211  1111 1    1112347899999999877776554               578888876 54433 223


Q ss_pred             CCCCeEEEEEe----CCCCEEEEE-eCCCeEEEEeCC-CCe-----eEEEecccC-cCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        321 HGKPVYCMSFQ----GDGSVVATG-GLDAFGRVWDLR-TGR-----CIMFLEGHL-KSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       321 ~~~~v~~~~~s----~d~~~l~t~-~~dg~i~iwd~~-~~~-----~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      +......++|+    |+++.|+.+ ..++.|.+||+. +++     ....+.++. ..+..++++++|+++++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            33456889999    999755544 567899999986 454     233344444 668899999999988888888999


Q ss_pred             EEEECCCccchheec
Q psy11350        389 KIWDLRKRRLLKWCT  403 (471)
Q Consensus       389 ~iwd~~~~~~~~~~~  403 (471)
                      .+||..+++.+..+.
T Consensus       250 ~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIR  264 (314)
T ss_dssp             EEECTTCBSCSEEEE
T ss_pred             EEEcCCCCcEeEEEe
Confidence            999998787766554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=2.8e-11  Score=114.32  Aligned_cols=228  Identities=11%  Similarity=-0.028  Sum_probs=150.9

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCceEEEeecC------CCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        150 GDTRPISYCSFSPDSQHVATASW-----SGLCKLWTVPECELVQTFRGH------DCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      +|-..+.+++|+++|+++++-..     ++.|.+||+.+++.+..+..+      ...+..+++.+.+..    ++++..
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~----~yvtd~  139 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF----VYISDP  139 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE----EEEEEC
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE----EEEEcC
Confidence            56778999999999876665433     578999999999877766532      235688999986542    445555


Q ss_pred             ---CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEE
Q psy11350        219 ---QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       219 ---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                         .++.|.+||+.+++....+..+.........+.++|..+.+...++.+..+.          ..+..|+|+|+++.|
T Consensus       140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------LGVNGIVLDAENEWL  209 (343)
T ss_dssp             CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------CCEEEEEECTTSCEE
T ss_pred             ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee----------cccceeEeccCCCEE
Confidence               6789999999888766655443211110133444566665555555543221          246889999999999


Q ss_pred             EEEecCC-eEEEEECC---CCc-----EE--EEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc-c
Q psy11350        296 GTCCWDH-SWRLWDLN---QGQ-----EV--LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG-H  363 (471)
Q Consensus       296 ~~~~~dg-~i~iwd~~---~~~-----~~--~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-h  363 (471)
                      +++...+ .|..++..   .+.     ..  ....++......++++++|.++++...++.|.+||..+++....... +
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~  289 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK  289 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence            8887766 55555532   110     00  01112334556789999999999998999999999856764333322 2


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iw  391 (471)
                      ...+.+++|.+++.++++.+..+.+.+|
T Consensus       290 ~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          290 LSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             eecCCeeEECCCCcEEEEeCcccccccc
Confidence            4568999999998888887655544433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=3.2e-11  Score=114.16  Aligned_cols=147  Identities=16%  Similarity=0.058  Sum_probs=116.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEe--cccc-----------ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRL--DTPL-----------ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~--~~~~-----------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  310 (471)
                      .++.+++++....+++|+.++....  ....           .......+. |+.|+|  ++++|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            6889999999999999999877332  1111           111112244 999999  89999999 88999999998


Q ss_pred             CCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy11350        311 QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKI  390 (471)
Q Consensus       311 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~i  390 (471)
                      +......+..|..++.++.+.+..  +++++.||.|.+||+.++....    +...|++++|||+|  ++.|..||++++
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            877666677788889888877653  8888999999999999887643    45689999999999  678999999999


Q ss_pred             EECCCccc--hhee
Q psy11350        391 WDLRKRRL--LKWC  402 (471)
Q Consensus       391 wd~~~~~~--~~~~  402 (471)
                      |+...+..  .+++
T Consensus       187 ~~~~~~~~~~k~~I  200 (388)
T 1xip_A          187 FAWRNGEMEKQFEF  200 (388)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EcCCCcccccccee
Confidence            99887765  4455

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=1.9e-09  Score=99.41  Aligned_cols=204  Identities=13%  Similarity=0.047  Sum_probs=135.1

Q ss_pred             CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc--
Q psy11350        193 HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT--  270 (471)
Q Consensus       193 h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~--  270 (471)
                      +..-.-+..|+|+...    ++++...++.|..||..++.. ..+...  ..+.+++++++|+++++ ..++.+.+..  
T Consensus        11 ~~~~~Egp~w~~~~~~----l~~~d~~~~~i~~~d~~~~~~-~~~~~~--~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~   82 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNS----LLFVDIPAKKVCRWDSFTKQV-QRVTMD--APVSSVALRQSGGYVAT-IGTKFCALNWKE   82 (297)
T ss_dssp             CCSBEEEEEEETTTTE----EEEEETTTTEEEEEETTTCCE-EEEECS--SCEEEEEEBTTSSEEEE-ETTEEEEEETTT
T ss_pred             CCccccCCeEECCCCE----EEEEECCCCEEEEEECCCCcE-EEEeCC--CceEEEEECCCCCEEEE-ECCeEEEEECCC
Confidence            3344568899996653    667777789999999987654 233222  37899999999995544 4554433321  


Q ss_pred             c-ccccc----CCCCcceEEEEECCCCCEEEEEec-----------CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCC
Q psy11350        271 P-LANLE----GHEPFRVSRIKFHPSGRFLGTCCW-----------DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG  334 (471)
Q Consensus       271 ~-~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~  334 (471)
                      . ...+.    ......+..++++|+|+++++...           .+.|..++.. ++. ..+..+....+.++|+||+
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTS
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCC
Confidence            1 11111    111235889999999996665432           2344445443 332 2233334456899999999


Q ss_pred             CEEE-EEeCCCeEEEEeC--CCCee-----EEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccC
Q psy11350        335 SVVA-TGGLDAFGRVWDL--RTGRC-----IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLL  406 (471)
Q Consensus       335 ~~l~-t~~~dg~i~iwd~--~~~~~-----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  406 (471)
                      +.|+ +.+.++.|.+|++  .++..     ...+..+.+.+..++++++|++.++....+.|..||..+++.+..+..+.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            8664 5556789999987  45542     22333344678999999999988888888899999999999888776543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.33  E-value=3e-13  Score=129.08  Aligned_cols=190  Identities=14%  Similarity=0.007  Sum_probs=111.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      ++..|++++.||.|+.||..+|+.+..+..  ..+.+..+..++.     ++++++.||.|..||..+++.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-----~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-----AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-----CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-----EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            578899999999999999999999988876  4555555555554     577778999999999988877665543211


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCC
Q psy11350        243 FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG  322 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  322 (471)
                      .                               ...  ..++    +. .+..+++++.++.|+.||..+|+.+..+..+.
T Consensus        81 ~-------------------------------~~~--~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~  122 (369)
T 2hz6_A           81 E-------------------------------LVQ--ASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF  122 (369)
T ss_dssp             H-------------------------------HHT--TCSC----C------CCCCEEEEEEEEECCC------------
T ss_pred             c-------------------------------ccc--cCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC
Confidence            0                               000  0011    01 24567788889999999999999887766543


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCccch
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG---YHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                          ...++|++..+++++.++.|+.||.++|+.+..+..+.  ....++.++.   ..+++++.||.|..||..+++.+
T Consensus       123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             --------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence                23456788899999999999999999998765554221  1223333332   55777889999999999999987


Q ss_pred             heec
Q psy11350        400 KWCT  403 (471)
Q Consensus       400 ~~~~  403 (471)
                      ....
T Consensus       197 W~~~  200 (369)
T 2hz6_A          197 WIQN  200 (369)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=2.9e-10  Score=107.37  Aligned_cols=207  Identities=9%  Similarity=-0.064  Sum_probs=133.2

Q ss_pred             cCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceEEEee-------cCCCCEEEEEEeeCCCCCCccEEEEEeC----
Q psy11350        153 RPISYCSFSPDSQHVATAS--WSGLCKLWTVPECELVQTFR-------GHDCNVGAIEFHPLPSEGAVCSLASCAQ----  219 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~----  219 (471)
                      ..+..++++|+|+++++..  .++.++||.+.+++. ..+.       .|-..+..+++.+++.     ++++...    
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-----L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-----VWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-----EEEEECHHHHT
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-----EEEEcCCCCcC
Confidence            6789999999999888864  234355555545543 2221       3456789999999875     4444333    


Q ss_pred             -CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        220 -DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       220 -dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                       ++.|.+||+.+++.+..+.....                                ...+ ...+..+++++++..++.+
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~--------------------------------~~~~-~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPP--------------------------------ITLS-NSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTT--------------------------------TSCT-TCCCCEEEEETTTTEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEEECChh--------------------------------hccc-ccccceEEEecCCCEEEEE
Confidence             57899999988876665543211                                0000 1235677787755444433


Q ss_pred             -e---cCCeEEEEECCCCcEEEEeeCCC-----------------------------CCeEEEEEeCCCCEEEEEeCCC-
Q psy11350        299 -C---WDHSWRLWDLNQGQEVLHQEGHG-----------------------------KPVYCMSFQGDGSVVATGGLDA-  344 (471)
Q Consensus       299 -~---~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~v~~~~~s~d~~~l~t~~~dg-  344 (471)
                       .   .++.|.+||+.+++....+.+|.                             ..+..++|+|||+.|+.+...+ 
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence             3   46778888887776555443321                             2368899999999888887766 


Q ss_pred             eEEEEeCC---CCe-----eEE--EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        345 FGRVWDLR---TGR-----CIM--FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       345 ~i~iwd~~---~~~-----~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      .++.++..   .+.     ...  ...++.+....++++++|.++++...++.|.+||..+++.
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          218 SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence            55555432   110     000  1113444667899999999999999999999999855654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.32  E-value=2.7e-10  Score=109.33  Aligned_cols=263  Identities=13%  Similarity=-0.002  Sum_probs=168.7

Q ss_pred             cCCCEEEEEeCC-----CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe----------CCCcEEEE
Q psy11350        162 PDSQHVATASWS-----GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA----------QDGSVKLW  226 (471)
Q Consensus       162 ~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iw  226 (471)
                      |+++++++....     +.|.++|+.+++.+..+..-..+  .+.++|++..     ++.+.          .++.|.++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~-----lyVan~~~~~~~~G~~~~~Vsvi  154 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSF-----FAQASTVFERIARGKRTDYVEVF  154 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC-----EEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCE-----EEEEeccccccccCCCCCEEEEE
Confidence            566777666543     69999999999999999865666  8999999984     54443          46789999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec--CCeE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSW  304 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i  304 (471)
                      |..+++.+..+.....                             .....   ......+.|+|+|++++++..  ++.|
T Consensus       155 D~~t~~vv~~I~v~g~-----------------------------~r~~~---g~~P~~~~~spDGk~lyV~n~~~~~~V  202 (426)
T 3c75_H          155 DPVTFLPIADIELPDA-----------------------------PRFLV---GTYQWMNALTPDNKNLLFYQFSPAPAV  202 (426)
T ss_dssp             CTTTCCEEEEEEETTC-----------------------------CCCCB---SCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred             ECCCCcEEEEEECCCc-----------------------------ccccc---CCCcceEEEcCCCCEEEEEecCCCCeE
Confidence            9999987776642200                             00000   012446889999999998874  5789


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCeeEEE----ecccCcCE-EEEEEcCCCCE
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDG-SVVATGGLDAFGRVWDLRTGRCIMF----LEGHLKSV-FSVDFSPDGYH  378 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~t~~~dg~i~iwd~~~~~~~~~----~~~h~~~v-~~~~~sp~~~~  378 (471)
                      .++|+.+++.+..+.-...    ....|++ ..+++.+.||.+.+.++.+++....    +.....++ ..+.|.+++..
T Consensus       203 sVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~  278 (426)
T 3c75_H          203 GVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR  278 (426)
T ss_dssp             EEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred             EEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence            9999999998887764221    2333433 5566667788887777755554422    21111221 23568999888


Q ss_pred             EEEEeCCCcEEEEECCCccc--hheecc---------cCCCccceeeccccce-eeeecccC--------CCcccccchh
Q psy11350        379 LATGSEDNAVKIWDLRKRRL--LKWCTQ---------LLPNSIGVTSLLTDLY-IDVLESLN--------PGIGNIISSA  438 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~~~~--~~~~~~---------~~~~~~~~~~~~~d~~-~~~~~~~~--------~~~~~~~~~~  438 (471)
                      ++..+..+.|.+.|+.....  +..+..         ..+.....+.+..+.. +.+.....        .+...++...
T Consensus       279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence            87778889999999865532  111110         1122222234455533 33332211        1234456666


Q ss_pred             hhcccccceeeecccceeeeecCC-eEEEe
Q psy11350        439 LKEQVEPIPLLLDIQKLTFKFDSD-LHAMV  467 (471)
Q Consensus       439 ~~~~~~~~~~~~~~~~l~fs~dg~-~lA~~  467 (471)
                      ....+..++.......++|+|||+ +|.+.
T Consensus       359 T~kvv~~I~vg~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          359 TGERINKIELGHEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             TCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred             CCeEEEEEECCCCcCeEEEccCCCEEEEEE
Confidence            667777888777789999999999 55443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.31  E-value=2e-10  Score=108.37  Aligned_cols=232  Identities=8%  Similarity=-0.082  Sum_probs=150.5

Q ss_pred             EEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecCC-------CCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        157 YCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGHD-------CNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      .+.|+||+++|+++.          .++.|.+||+.+++.+.++..+.       .....+.++|++.     +++.+..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-----~lyVan~  143 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-----CLLFFLF  143 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-----CEEEEEC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC-----EEEEEcc
Confidence            799999999999886          36889999999999999986431       2345899999998     4666653


Q ss_pred             --CCcEEE--EeCCCCcceeeecCCCCc------ceEEEEECCCCCEEEEEeCC-----CeEEeccccccccCCCCcceE
Q psy11350        220 --DGSVKL--WSLDKDTPLANLEGHEPF------RVSRIKFHPSGRFLGTCCWD-----HSWRLDTPLANLEGHEPFRVS  284 (471)
Q Consensus       220 --dg~i~i--wd~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~i~~~~~d-----~~~~~~~~~~~~~~~~~~~v~  284 (471)
                        +..|.+  +|+.+   +..+......      .-.-+.++++|+.++.....     +.+..... ..+.. ...+. 
T Consensus       144 ~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~v-g~~P~-  217 (368)
T 1mda_H          144 GSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNC-SSQAA-  217 (368)
T ss_dssp             SSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCB-CSCCE-
T ss_pred             CCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eeeeC-CCCcc-
Confidence              467888  99876   3444321110      00113444555554433322     22111000 01111 11222 


Q ss_pred             EEEECCCCCEEEEEecCCeEEEEECCCCc--EEEEeeC-------CC---CCeEEEEEeCCCCEEEEEeC---------C
Q psy11350        285 RIKFHPSGRFLGTCCWDHSWRLWDLNQGQ--EVLHQEG-------HG---KPVYCMSFQGDGSVVATGGL---------D  343 (471)
Q Consensus       285 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~-------~~---~~v~~~~~s~d~~~l~t~~~---------d  343 (471)
                        . .+++..++..+. +.|.+.|+....  .+..+..       +.   .....++|+||++.++++..         +
T Consensus       218 --~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~  293 (368)
T 1mda_H          218 --Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             --E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             --c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence              3 666676666666 999999997542  2222211       00   11112689999998887543         2


Q ss_pred             CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCccchheecc
Q psy11350        344 AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATGS-EDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +.+.++|+.+.+.+.++.... ...+|+|+|||+ .+++.. .++.|.++|+.+++.+.++..
T Consensus       294 ~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          294 ENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            356799999999988887443 689999999997 566666 599999999999999988764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=2.1e-09  Score=103.80  Aligned_cols=195  Identities=9%  Similarity=0.015  Sum_probs=134.5

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC--eEEecccc
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH--SWRLDTPL  272 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~--~~~~~~~~  272 (471)
                      .....|+|++++.     ++++...++.|++||..++..........  ... ++|+++++.++++..++  .+......
T Consensus       131 ~~P~~la~d~~g~-----lyv~d~~~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-----VLAYQRDDPRVRLISVDDNKVTTVHPGFK--GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTE-----EEEEETTTTEEEEEETTTTEEEEEEETCC--BCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCC-----EEEEecCCCcEEEEECCCCEEEEeeccCC--CCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            3578999998886     66777777999999998776655444322  334 99999999998888765  33221111


Q ss_pred             -----ccc---cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE----eeCCCCCe--EEEEEeCC-CCEE
Q psy11350        273 -----ANL---EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH----QEGHGKPV--YCMSFQGD-GSVV  337 (471)
Q Consensus       273 -----~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~s~d-~~~l  337 (471)
                           ..+   ..+....+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence                 111   121234578899999666666677789999999987754332    22222222  38999995 6666


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEecccC---------------cCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCccch
Q psy11350        338 ATGGLDAFGRVWDLRTGRCIMFLEGHL---------------KSVFSVDFSPDGYHLATGS-EDNAVKIWDLRKRRLL  399 (471)
Q Consensus       338 ~t~~~dg~i~iwd~~~~~~~~~~~~h~---------------~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~  399 (471)
                      ++....+.|+.|+....  +..+.++.               .....++++|+|+++++-+ .++.|+.|++.+++..
T Consensus       283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            66677889999997643  33333332               3588999999999888877 8899999998777643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.28  E-value=4.9e-09  Score=98.08  Aligned_cols=195  Identities=15%  Similarity=0.004  Sum_probs=129.6

Q ss_pred             EEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc--c-cc
Q psy11350        197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT--P-LA  273 (471)
Q Consensus       197 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~--~-~~  273 (471)
                      ..++.|+|++..    ++++...++.|..||..+++.. .+..  ...+.++.|+++|+++++. .++.+.+..  . ..
T Consensus        51 ~egp~~~~~~~~----l~~~d~~~~~i~~~d~~~~~~~-~~~~--~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGT----AWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETTTTE----EEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEE
T ss_pred             CcCCeEeCCCCE----EEEEECCCCEEEEEECCCCcEE-EEEC--CCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEE
Confidence            457889997653    5677777899999999876543 2322  2378999999999877754 455433321  1 11


Q ss_pred             cccC----CCCcceEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eC
Q psy11350        274 NLEG----HEPFRVSRIKFHPSGRFLGTCCW------DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GL  342 (471)
Q Consensus       274 ~~~~----~~~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~  342 (471)
                      .+..    .....+..+.++|+|+++++...      .+.|..++  +++.. .+..+......++|+||++.|+.+ +.
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            1111    11235889999999997665432      25677777  45433 332333456789999999866554 45


Q ss_pred             CCeEEEEeCC--CC-e-----eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        343 DAFGRVWDLR--TG-R-----CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       343 dg~i~iwd~~--~~-~-----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++.|.+||+.  ++ .     ....+......+..++++++|.++++...++.|.+||. +++.+..+.
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            7899999986  55 3     22333334456789999999998887777789999998 566665554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=5.1e-10  Score=115.13  Aligned_cols=253  Identities=11%  Similarity=0.010  Sum_probs=165.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecC-C----CCEEEEEEeeCCCCCCccEEEEEeC------CCcEEEEeCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGH-D----CNVGAIEFHPLPSEGAVCSLASCAQ------DGSVKLWSLDKD  231 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~----~~v~~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~  231 (471)
                      ++..|++++.|+.|..+|..+|+.+..+..+ .    ..+.+--....+      .++.++.      +|.|..||..+|
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~------~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG------KVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC------EEEEEecccccCCCCEEEEEECCCC
Confidence            4578888999999999999999999888754 2    112111111122      3555543      699999999999


Q ss_pred             cceeeecCCCCc-------------------------------ceEEEEECCCCCEEEEEeCCCe---------------
Q psy11350        232 TPLANLEGHEPF-------------------------------RVSRIKFHPSGRFLGTCCWDHS---------------  265 (471)
Q Consensus       232 ~~~~~~~~~~~~-------------------------------~v~~~~~s~~~~~i~~~~~d~~---------------  265 (471)
                      +.+..+......                               ....++++|++..+++++.++.               
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence            988776542211                               1135788899998888776542               


Q ss_pred             ----E-Ee--ccccc--ccc--CCC------CcceEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeeCCC---
Q psy11350        266 ----W-RL--DTPLA--NLE--GHE------PFRVSRIKFHPSG---RFLGTCCWDHSWRLWDLNQGQEVLHQEGHG---  322 (471)
Q Consensus       266 ----~-~~--~~~~~--~~~--~~~------~~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  322 (471)
                          + -+  .+...  .+.  .+.      ......+....+|   ..++.++.+|.|+++|..+++.+..+....   
T Consensus       281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~  360 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW  360 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred             eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence                1 11  11000  000  010      1112222333366   678899999999999999999876654211   


Q ss_pred             --------CCe------------------------EEEEEeCCCCEEEEEeC----------------------------
Q psy11350        323 --------KPV------------------------YCMSFQGDGSVVATGGL----------------------------  342 (471)
Q Consensus       323 --------~~v------------------------~~~~~s~d~~~l~t~~~----------------------------  342 (471)
                              .++                        ..++|+|++.++++...                            
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                    111                        15688998888887543                            


Q ss_pred             ---------------CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        343 ---------------DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       343 ---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                                     .|.|..||+.+++.+..+. +..++....+...+..++.++.||.+++||.++++.+..+.....
T Consensus       441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  519 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence                           2789999999999887775 334455556667788899999999999999999999998876654


Q ss_pred             Cccceeeccccceee
Q psy11350        408 NSIGVTSLLTDLYID  422 (471)
Q Consensus       408 ~~~~~~~~~~d~~~~  422 (471)
                      .....++...+....
T Consensus       520 ~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQY  534 (677)
T ss_dssp             CCSCCEEEEETTEEE
T ss_pred             cccCCEEEEeCCEEE
Confidence            333334433444333

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.20  E-value=2.6e-09  Score=98.91  Aligned_cols=231  Identities=13%  Similarity=0.016  Sum_probs=139.3

Q ss_pred             eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe
Q psy11350        186 LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS  265 (471)
Q Consensus       186 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~  265 (471)
                      .+..+...........|+|++..    ++++...++.|..|+. ++. ...+...                         
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~----l~~~d~~~~~i~~~~~-~g~-~~~~~~~-------------------------   84 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRT----LVWSDLVGRRVLGWRE-DGT-VDVLLDA-------------------------   84 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTE----EEEEETTTTEEEEEET-TSC-EEEEEES-------------------------
T ss_pred             ceEEEecCCcCccCCeEeCCCCE----EEEEECCCCEEEEEeC-CCC-EEEEeCC-------------------------
Confidence            33444444566788999999873    5677778899999987 443 2222211                         


Q ss_pred             EEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee---C-CCCCeEEEEEeCCCCEEEE--
Q psy11350        266 WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE---G-HGKPVYCMSFQGDGSVVAT--  339 (471)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~~~~s~d~~~l~t--  339 (471)
                                    ...+..++++++|+++++...++.|.+|+.. ++......   + ....+++++++|+|+++++  
T Consensus        85 --------------~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~  149 (305)
T 3dr2_A           85 --------------TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDP  149 (305)
T ss_dssp             --------------CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECC
T ss_pred             --------------CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCc
Confidence                          1247788999999866665556789999986 54322211   1 1134668999999998886  


Q ss_pred             --EeC-------------CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCccc
Q psy11350        340 --GGL-------------DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSED------NAVKIWDLRKRRL  398 (471)
Q Consensus       340 --~~~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d------g~i~iwd~~~~~~  398 (471)
                        |..             .+.|+.||..+++.....  .......++|+|+++.|+.+...      +.|.+|++..+. 
T Consensus       150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-  226 (305)
T 3dr2_A          150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-  226 (305)
T ss_dssp             SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-
T ss_pred             CCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-
Confidence              432             256888887777654333  44567899999999988777665      689999987654 


Q ss_pred             hh---eecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeec
Q psy11350        399 LK---WCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       399 ~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                      +.   .+.........-+.+..+..  +|.....+ ...+.. ....+..+........++|+|+++.|.+..+
T Consensus       227 l~~~~~~~~~~~~~pdgi~~d~~G~--lwv~~~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          227 LHDRRHFASVPDGLPDGFCVDRGGW--LWSSSGTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEEEEEECCSSSCCCSEEECTTSC--EEECCSSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             ccCCeEEEECCCCCCCeEEECCCCC--EEEecCCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            21   11111111111122233333  33333222 112221 2223333333335678999999999988765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=3.4e-09  Score=109.29  Aligned_cols=256  Identities=12%  Similarity=-0.025  Sum_probs=163.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecC--CCCEEEEEEee---CCCCCCccEEEEEe------CCCcEEEEeCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGH--DCNVGAIEFHP---LPSEGAVCSLASCA------QDGSVKLWSLDKD  231 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~---~~~~~~~~~l~s~~------~dg~i~iwd~~~~  231 (471)
                      ++..|++++.|+.|+.+|..+|+.+..+...  ......+...|   ++      .++.++      .+|.|..||..+|
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g------~v~vg~~~~~~~~~g~v~a~D~~tG  193 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG------KVVIGNGGAEFGVRGYVTAYDAETG  193 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC------EEEEEeCCCccCCCCEEEEEECCCC
Confidence            3568888999999999999999998877642  11111111111   33      344443      3689999999999


Q ss_pred             cceeeecCCC--C----------------------------cceEEEEECCCCCEEEEEeCCCe----------------
Q psy11350        232 TPLANLEGHE--P----------------------------FRVSRIKFHPSGRFLGTCCWDHS----------------  265 (471)
Q Consensus       232 ~~~~~~~~~~--~----------------------------~~v~~~~~s~~~~~i~~~~~d~~----------------  265 (471)
                      +.+..+....  .                            .....++++|++..+++++.++.                
T Consensus       194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y  273 (689)
T 1yiq_A          194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF  273 (689)
T ss_dssp             CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred             cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            9887764210  0                            01125788898888888877652                


Q ss_pred             ---E---Eecccccc--ccC--C------CCcceEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeeCCC----
Q psy11350        266 ---W---RLDTPLAN--LEG--H------EPFRVSRIKFHPSGR---FLGTCCWDHSWRLWDLNQGQEVLHQEGHG----  322 (471)
Q Consensus       266 ---~---~~~~~~~~--~~~--~------~~~~v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  322 (471)
                         +   +..+....  +..  +      ....+.......+|+   .++.++.+|.++++|..+++.+.......    
T Consensus       274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence               1   11111110  110  1      011111122222454   78889999999999999999874322110    


Q ss_pred             ------------------------C-----------CeEEEEEeCCCCEEEEEeC-------------------------
Q psy11350        323 ------------------------K-----------PVYCMSFQGDGSVVATGGL-------------------------  342 (471)
Q Consensus       323 ------------------------~-----------~v~~~~~s~d~~~l~t~~~-------------------------  342 (471)
                                              .           .-..++|+|+..++++...                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                    0           0112688998888777532                         


Q ss_pred             --------------------CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        343 --------------------DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       343 --------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                                          +|.|+.||+.+++.+..+..+. ++..-.+...+.++++|+.||.|+.||.++|+.+..+
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence                                3789999999999888776443 3333456667889999999999999999999999888


Q ss_pred             cccCCCccceeeccccceeeeec
Q psy11350        403 TQLLPNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       403 ~~~~~~~~~~~~~~~d~~~~~~~  425 (471)
                      ..........++...+....+..
T Consensus       513 ~~~~~~~~~p~ty~~~G~qyv~~  535 (689)
T 1yiq_A          513 PAASGVMAAPVTYSVDGEQYVTF  535 (689)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eCCCCcccCceEEEECCEEEEEE
Confidence            76655444445544555544433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.14  E-value=8.7e-09  Score=92.01  Aligned_cols=196  Identities=7%  Similarity=-0.030  Sum_probs=139.3

Q ss_pred             CeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceEEEeecCCC-CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        154 PISYCSFSPDSQHVATASW--SGLCKLWTVPECELVQTFRGHDC-NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ....+.|+|++.+.++.+.  ++.|.++|+.+++.+..+..... ....+++.  +..    +.++.-.++.+.++|..+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~----lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEK----LYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTE----EEEEETTCSEEEEEETTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCE----EEEEEecCCEEEEEECCC
Confidence            3678999998744444442  57999999999999988763222 22345554  332    455666789999999999


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  310 (471)
                      .+.+..+....+                                     .    ...++++|+.++++..++.|.++|..
T Consensus        96 ~~v~~~i~~g~~-------------------------------------~----g~glt~Dg~~l~vs~gs~~l~viD~~  134 (266)
T 2iwa_A           96 LSNIKNFTHQMK-------------------------------------D----GWGLATDGKILYGSDGTSILYEIDPH  134 (266)
T ss_dssp             TEEEEEEECCSS-------------------------------------S----CCEEEECSSSEEEECSSSEEEEECTT
T ss_pred             CcEEEEEECCCC-------------------------------------C----eEEEEECCCEEEEECCCCeEEEEECC
Confidence            888777653211                                     1    12244577777777778999999999


Q ss_pred             CCcEEEEeeCCC-----CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-------------CcCEEEEEE
Q psy11350        311 QGQEVLHQEGHG-----KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-------------LKSVFSVDF  372 (471)
Q Consensus       311 ~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~  372 (471)
                      +.+.+..+.-..     ..++.+.|. +|.+.+....++.|.+.|..+++.+..+...             ......|+|
T Consensus       135 t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~  213 (266)
T 2iwa_A          135 TFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW  213 (266)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred             CCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEE
Confidence            988877765321     236788888 7766555556889999999999988887632             135789999


Q ss_pred             cCCCCE-EEEEeCCCcEEEEECCCcc
Q psy11350        373 SPDGYH-LATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       373 sp~~~~-l~s~s~dg~i~iwd~~~~~  397 (471)
                      +|+++. ++++...+.|.+.++....
T Consensus       214 ~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          214 DQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             ETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             cCCCCEEEEECCCCCeEEEEEEeccc
Confidence            998764 5566677889998887653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.08  E-value=3.7e-09  Score=109.51  Aligned_cols=194  Identities=16%  Similarity=0.093  Sum_probs=126.3

Q ss_pred             CCCCEEEEEEeeCCCCCCccEEE-EEeC----CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--
Q psy11350        193 HDCNVGAIEFHPLPSEGAVCSLA-SCAQ----DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--  265 (471)
Q Consensus       193 h~~~v~~l~~~~~~~~~~~~~l~-s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--  265 (471)
                      |...+..++|+|++.     +|+ +.+.    ...|++||+.+++.+.....  ......++|+ ||+.|+.++.+..  
T Consensus       127 ~~~~l~~~~~SpDg~-----~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          127 GTTALDQLSFSRDGR-----ILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             SCCEEEEEEECTTSS-----EEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred             CcEEEEEEEECCCCC-----EEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-CCCEEEEEEecCccc
Confidence            455788999999998     454 3322    35799999999986543111  0013567899 9999998887732  


Q ss_pred             -----------EE---eccccc----cccCCC--CcceEEEEECCCCCEEEEEec----CCeEEEEECCCCc-EEEEeeC
Q psy11350        266 -----------WR---LDTPLA----NLEGHE--PFRVSRIKFHPSGRFLGTCCW----DHSWRLWDLNQGQ-EVLHQEG  320 (471)
Q Consensus       266 -----------~~---~~~~~~----~~~~~~--~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~  320 (471)
                                 +.   +.+...    .+....  ...+..+.|+|+|++|+....    .+.|+++|+.++. ....+..
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                       22   222221    112211  234678999999998865543    2489999998764 3455666


Q ss_pred             CCCCeEEEEEeCCCCEEE-EEeCC---CeEEEEeCCCCee--EEEecccCcCEEEEEEcCCCCEEEEEeCCC---cEEEE
Q psy11350        321 HGKPVYCMSFQGDGSVVA-TGGLD---AFGRVWDLRTGRC--IMFLEGHLKSVFSVDFSPDGYHLATGSEDN---AVKIW  391 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~-t~~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---~i~iw  391 (471)
                      +....... |+++|..|+ .+..+   +.|.++|+.++..  ...+..|...+.  .|++++++|+....++   .|++|
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            66666555 666666554 44333   6799999988754  345555666655  8899998887766544   68999


Q ss_pred             ECCCcc
Q psy11350        392 DLRKRR  397 (471)
Q Consensus       392 d~~~~~  397 (471)
                      |+..+.
T Consensus       356 d~~g~~  361 (693)
T 3iuj_A          356 DYEGKR  361 (693)
T ss_dssp             CTTSCE
T ss_pred             ECCCCe
Confidence            987543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=6.7e-08  Score=91.83  Aligned_cols=192  Identities=11%  Similarity=0.100  Sum_probs=128.5

Q ss_pred             cCCCEEEE-EeCCCcEEEEeCCCC----ceEEEee-------cCCCCEEEEEEeeCCCCCCccEEEEEeCC------CcE
Q psy11350        162 PDSQHVAT-ASWSGLCKLWTVPEC----ELVQTFR-------GHDCNVGAIEFHPLPSEGAVCSLASCAQD------GSV  223 (471)
Q Consensus       162 ~~~~~l~t-g~~dg~i~iwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i  223 (471)
                      +++++|+. |..++.|+|+|+.+.    +...++.       .....-..+.+.|++      +++++..+      |.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG------i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA------IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC------EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe------EEEEcCCCcCCCCCCeE
Confidence            78888765 556789999998754    5666662       111234567788887      34555444      789


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe----
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC----  299 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~----  299 (471)
                      .++|..+.+.+..+......                                    ..--..+.|+|+++.++++.    
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~------------------------------------~~~~Yd~~~~p~~~~mvsS~wg~p  210 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGD------------------------------------QYLAYDFWWNLPNEVLVSSEWAVP  210 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTT------------------------------------CCCCCCEEEETTTTEEEECBCCCH
T ss_pred             EEEECCCCeEEEEEccCCCC------------------------------------ccccceEEECCCCCEEEEccCcCc
Confidence            99999999888877643210                                    11123466677777666664    


Q ss_pred             ---------------cCCeEEEEECCCCcEEEEeeCC-C-CCeEEEEE--eCCCCEEEEEe------CCCeEEEEeCCCC
Q psy11350        300 ---------------WDHSWRLWDLNQGQEVLHQEGH-G-KPVYCMSF--QGDGSVVATGG------LDAFGRVWDLRTG  354 (471)
Q Consensus       300 ---------------~dg~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~--s~d~~~l~t~~------~dg~i~iwd~~~~  354 (471)
                                     .+.+|.+||+.+++.+.++... . .....+.|  +|+++++++++      .+++|.+|....+
T Consensus       211 ~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          211 NTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             HHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             cccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence                           3688999999998877776542 1 23345555  99999888776      5668887765544


Q ss_pred             ee--EEEe--ccc----------------CcCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q psy11350        355 RC--IMFL--EGH----------------LKSVFSVDFSPDGYHLATGSE-DNAVKIWDLRK  395 (471)
Q Consensus       355 ~~--~~~~--~~h----------------~~~v~~~~~sp~~~~l~s~s~-dg~i~iwd~~~  395 (471)
                      +.  ...+  ...                ...+..|.+||||++|+++.. .+.|.+||+..
T Consensus       291 ~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          291 KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            21  1111  110                235788999999999887764 68899999863

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=5.5e-08  Score=85.77  Aligned_cols=182  Identities=9%  Similarity=0.039  Sum_probs=129.1

Q ss_pred             eEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        155 ISYCSFSPDSQHVATASWSG--LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.... ........+.+..    +.+..-.++.+.+||..+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~----ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDK----IVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTE----EEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCE----EEEEEeeCCEEEEEECccCc
Confidence            3678898 666666666665  89999999999998887543 3333333334442    44555568999999999998


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  312 (471)
                      .+.++.....                                     .   ..++  +++..|+.+..++.|.++|..+.
T Consensus       119 ~~~ti~~~~e-------------------------------------G---~glt--~dg~~L~~SdGs~~i~~iDp~T~  156 (262)
T 3nol_A          119 QVRSFNYDGE-------------------------------------G---WGLT--HNDQYLIMSDGTPVLRFLDPESL  156 (262)
T ss_dssp             EEEEEECSSC-------------------------------------C---CCEE--ECSSCEEECCSSSEEEEECTTTC
T ss_pred             EEEEEECCCC-------------------------------------c---eEEe--cCCCEEEEECCCCeEEEEcCCCC
Confidence            8887764221                                     1   1233  46777777777888999999999


Q ss_pred             cEEEEeeCC--C---CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc------------CcCEEEEEEcCC
Q psy11350        313 QEVLHQEGH--G---KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH------------LKSVFSVDFSPD  375 (471)
Q Consensus       313 ~~~~~~~~~--~---~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~~~~sp~  375 (471)
                      +.+..+.-.  .   ..++.+.|. +|.+.+..-.++.|.+.|..+++.+..+...            ....+.|+|+|+
T Consensus       157 ~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          157 TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            888776532  2   334567776 7766655557889999999999988877532            135689999998


Q ss_pred             CCEEEEEeCC
Q psy11350        376 GYHLATGSED  385 (471)
Q Consensus       376 ~~~l~s~s~d  385 (471)
                      ++.|+..+..
T Consensus       236 ~~~lfVTGK~  245 (262)
T 3nol_A          236 HHRLFVTGKL  245 (262)
T ss_dssp             TTEEEEEETT
T ss_pred             CCEEEEECCC
Confidence            8877776654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.04  E-value=6.1e-08  Score=92.13  Aligned_cols=185  Identities=12%  Similarity=0.020  Sum_probs=115.0

Q ss_pred             eEEEEECCCCCEEEEEecC------CeEEEEECCCCcEEEEeeCCC---CCeEEEEEeCCCCEEEEEe------------
Q psy11350        283 VSRIKFHPSGRFLGTCCWD------HSWRLWDLNQGQEVLHQEGHG---KPVYCMSFQGDGSVVATGG------------  341 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~~------------  341 (471)
                      ...+.+.|+| .++++..+      |.|.++|..+.+.+..+....   .--+.+.|+|+++.+++..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            4556777888 55555444      789999999999988876332   2244688899999988884            


Q ss_pred             -------CCCeEEEEeCCCCeeEEEeccc--CcCEEEEEE--cCCCCEEEEEe------CCCcEEEEECCCccc--hhee
Q psy11350        342 -------LDAFGRVWDLRTGRCIMFLEGH--LKSVFSVDF--SPDGYHLATGS------EDNAVKIWDLRKRRL--LKWC  402 (471)
Q Consensus       342 -------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--sp~~~~l~s~s------~dg~i~iwd~~~~~~--~~~~  402 (471)
                             .+.+|.+||+.+++.+.++...  ......+.|  +|++++++.++      .+++|.+|..+.++.  ++.+
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   3689999999999888877642  134556666  99999888776      466887766544321  1111


Q ss_pred             --cc---------cC------CCccceeeccccceeeeecccCCCcccccch---hhhcccccceee-------------
Q psy11350        403 --TQ---------LL------PNSIGVTSLLTDLYIDVLESLNPGIGNIISS---ALKEQVEPIPLL-------------  449 (471)
Q Consensus       403 --~~---------~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------  449 (471)
                        ..         ..      +....-+.++.|.+..+...+..+...++.-   .....+..+++.             
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence              00         00      1223444456666555544444433332221   111222333332             


Q ss_pred             --ecccceeeeecCCeEEEee
Q psy11350        450 --LDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       450 --~~~~~l~fs~dg~~lA~~~  468 (471)
                        ...+.+++||||++|.+.-
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence              1258899999999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.04  E-value=7.6e-09  Score=97.62  Aligned_cols=265  Identities=11%  Similarity=-0.065  Sum_probs=164.0

Q ss_pred             cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe----------CCCcEEEEeCCCCcceeeecCCC---
Q psy11350        175 LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA----------QDGSVKLWSLDKDTPLANLEGHE---  241 (471)
Q Consensus       175 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~---  241 (471)
                      .|.++|..+++.+.++.....+  .+.++|++..     ++.+.          .++.|.+||+.+++.+..+....   
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~-----lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD-----FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSC-----EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCE-----EEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence            8889999999999999866666  7999999984     55554          47899999999999998876431   


Q ss_pred             ---CcceEEEEECCCCCEEEEEeCC--CeEEe--ccc--cccccCCCCcceEEEEECCCCC-EEEEEecCCeEEEEECCC
Q psy11350        242 ---PFRVSRIKFHPSGRFLGTCCWD--HSWRL--DTP--LANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       242 ---~~~v~~~~~s~~~~~i~~~~~d--~~~~~--~~~--~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~  311 (471)
                         ......++++|||++++++...  ..+.+  ...  ...+...  .   ++.+.|+++ .+++.+.||.+.+.|+.+
T Consensus       120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~--~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA--S---CFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS--S---CCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECC--C---ceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence               1245689999999999998753  33444  322  1111110  0   112234443 445566788888889886


Q ss_pred             -----CcEEEE----eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe--eEEEecc-------cC---cCEEEE
Q psy11350        312 -----GQEVLH----QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR--CIMFLEG-------HL---KSVFSV  370 (471)
Q Consensus       312 -----~~~~~~----~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~-------h~---~~v~~~  370 (471)
                           ++....    +.....+.   . ++++..++..+. +.|.+.|+.+..  .+..+..       +.   .....+
T Consensus       195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v  269 (368)
T 1mda_H          195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence                 332211    11122343   3 666666666666 999999986542  2222211       11   111126


Q ss_pred             EEcCCCCEEEEEeC---------CCcEEEEECCCccchheecccCCCccceeeccccceeeeeccc-CCCcccccchhhh
Q psy11350        371 DFSPDGYHLATGSE---------DNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESL-NPGIGNIISSALK  440 (471)
Q Consensus       371 ~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~  440 (471)
                      +++|+++.++.+..         ++.+.++|+.+++.+..+....  ...-+.+..|....++... ..+...++.....
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            89999988876533         2356699999999988876443  2334445555544444443 3444555555555


Q ss_pred             cccccceeeecccceeee
Q psy11350        441 EQVEPIPLLLDIQKLTFK  458 (471)
Q Consensus       441 ~~~~~~~~~~~~~~l~fs  458 (471)
                      ..+..++.......+++.
T Consensus       348 kvv~~I~vg~~P~~i~~~  365 (368)
T 1mda_H          348 QDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EEEEECCCCSCCCEEECC
T ss_pred             cEEEEEECCCCCCEEEee
Confidence            555666655555555554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.04  E-value=6.6e-07  Score=80.82  Aligned_cols=207  Identities=13%  Similarity=-0.007  Sum_probs=130.9

Q ss_pred             cCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        153 RPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ..+.+++|++++..|+.+. .++.|.++++.+......+.........+++.|.+..    ++++....+.|.+++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~----lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRT----IFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTE----EEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCe----EEEEECCCCEEEEEEcCCC
Confidence            3567899999877666555 5689999998765544333333356789999987652    4555556778999887533


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec---CCeEEEEE
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW---DHSWRLWD  308 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~iwd  308 (471)
                      .. ..+....                                      ......++++|++..|+.+..   .+.|..++
T Consensus       112 ~~-~~~~~~~--------------------------------------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A          112 QR-RVLFDTG--------------------------------------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             SC-EEEECSS--------------------------------------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             CE-EEEEECC--------------------------------------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            21 1111000                                      113577888886666555553   36788888


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCc
Q psy11350        309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA  387 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  387 (471)
                      +..................++++|++..|+.+ ...+.|.++|+........+.+ ......++.. ++.++++....+.
T Consensus       153 ~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred             cCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCe
Confidence            76432211122233457899999987655544 4567899999875543333332 2345677764 4444455556689


Q ss_pred             EEEEECCCccchheecc
Q psy11350        388 VKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       388 i~iwd~~~~~~~~~~~~  404 (471)
                      |.++|..+++.+.++..
T Consensus       231 v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          231 VIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             EEEEETTTTEEEEEECC
T ss_pred             EEEEeCCCCCceEEEcc
Confidence            99999999998887753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=8.7e-09  Score=101.31  Aligned_cols=221  Identities=11%  Similarity=0.024  Sum_probs=145.4

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeec---------------------------------C------CCCEEEEEEee---
Q psy11350        167 VATASWSGLCKLWTVPECELVQTFRG---------------------------------H------DCNVGAIEFHP---  204 (471)
Q Consensus       167 l~tg~~dg~i~iwd~~~~~~~~~~~~---------------------------------h------~~~v~~l~~~~---  204 (471)
                      +.+|+..|.++|+-+++++.+..+..                                 +      .+.......+.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            56788899999999988887765421                                 0      11122344444   


Q ss_pred             --CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEE-C-CCCCEEEEEeCC-------Ce--------
Q psy11350        205 --LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKF-H-PSGRFLGTCCWD-------HS--------  265 (471)
Q Consensus       205 --~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~i~~~~~d-------~~--------  265 (471)
                        ++..    +++....++.|.+.|+.+.++...+..........+++ + |+++++++++..       |.        
T Consensus        98 ~~DG~~----lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           98 KYDGRF----LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEE----EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CcCCCE----EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence              5552    45555566789999999999888665544446888888 5 999999888632       21        


Q ss_pred             ---EE---eccc--cccccCCCCcceEEEEECCCCCEEEEEecCC-----------------------------------
Q psy11350        266 ---WR---LDTP--LANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-----------------------------------  302 (471)
Q Consensus       266 ---~~---~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------------------  302 (471)
                         +.   ..+.  ...+.-  ......++++|+|+++++.+.+.                                   
T Consensus       174 ~~~vtvID~~t~~v~~qI~V--gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             CceEEEEECCCCeEEEEEEe--CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence               11   1110  111110  01234578999999999888553                                   


Q ss_pred             ---eEEEEECCC--CcE-EEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCe------------eEEEeccc
Q psy11350        303 ---SWRLWDLNQ--GQE-VLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGR------------CIMFLEGH  363 (471)
Q Consensus       303 ---~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~------------~~~~~~~h  363 (471)
                         .|.+.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            .+..+. -
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v  329 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L  329 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred             EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence               367777776  433 333332 22345789999999777665 67899999998653            233333 2


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       364 ~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      ......++|+|+|...++.--|+.|.+||+.+
T Consensus       330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            35688999999995455667899999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.02  E-value=5e-08  Score=100.58  Aligned_cols=188  Identities=14%  Similarity=0.101  Sum_probs=115.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC----------E-EEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCN----------V-GAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      +..|++++.++.|+-+|..+|+.+..+..+...          + ..+..  .+.     .++.++.|+.|..+|..+|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-----~v~v~~~dg~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKG-----KVYVGVLDGRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETT-----EEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECC-----EEEEEccCCEEEEEECCCCC
Confidence            567888888999999999999999887643221          0 11222  122     58888999999999999999


Q ss_pred             ceeeecCC-CCcceEEEEECC---CCCEEEEEeC------CCe------------EEecccc-ccc--------------
Q psy11350        233 PLANLEGH-EPFRVSRIKFHP---SGRFLGTCCW------DHS------------WRLDTPL-ANL--------------  275 (471)
Q Consensus       233 ~~~~~~~~-~~~~v~~~~~s~---~~~~i~~~~~------d~~------------~~~~~~~-~~~--------------  275 (471)
                      .+..+... .......+..+|   ++. +++++.      ++.            |...... ...              
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  221 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT  221 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence            88776543 110001111111   232 222221      222            3222100 000              


Q ss_pred             -cC-------CCCcceEEEEECCCCCEEEEEecCCe-------------------EEEEECCCCcEEEEeeC--CC----
Q psy11350        276 -EG-------HEPFRVSRIKFHPSGRFLGTCCWDHS-------------------WRLWDLNQGQEVLHQEG--HG----  322 (471)
Q Consensus       276 -~~-------~~~~~v~~l~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--~~----  322 (471)
                       .+       ........++++|+...+++++.++.                   |..||..+++.+..+..  |.    
T Consensus       222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~  301 (689)
T 1yiq_A          222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY  301 (689)
T ss_dssp             CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred             cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence             00       00011135788898899999887764                   99999999999877654  22    


Q ss_pred             ---CCeEEEEEeCCCC---EEEEEeCCCeEEEEeCCCCeeEEE
Q psy11350        323 ---KPVYCMSFQGDGS---VVATGGLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       323 ---~~v~~~~~s~d~~---~l~t~~~dg~i~iwd~~~~~~~~~  359 (471)
                         .++.......+|+   .++.++.+|.++++|..+|+.+..
T Consensus       302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence               1222223333665   788999999999999999998743

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.00  E-value=7.3e-07  Score=84.90  Aligned_cols=226  Identities=12%  Similarity=-0.052  Sum_probs=140.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecC---------CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGH---------DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      ++..|++++.++.|..+|..+|+.+..+...         ...+.+.-...+ .     .++.++.++.|..+|..+++.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG-G-----HVYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET-T-----EEEEEETTSEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC-C-----EEEEEcCCCEEEEEECCCCCE
Confidence            3577888888999999999999988776642         223322222223 3     588888999999999999998


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecc---ccccccCCCCcce------EEEEECCCCCEEEEEecCCeE
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDT---PLANLEGHEPFRV------SRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~---~~~~~~~~~~~~v------~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +..+...... ......  .+..+++++.++.+....   ............+      .....  .+..+++++.++.|
T Consensus       126 ~W~~~~~~~~-~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l  200 (376)
T 3q7m_A          126 AWQTKVAGEA-LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRV  200 (376)
T ss_dssp             EEEEECSSCC-CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEE
T ss_pred             EEEEeCCCce-EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEE
Confidence            8766544321 111111  134566666666432211   1111100000001      11111  24578888889999


Q ss_pred             EEEECCCCcEEEEeeCCCCC-------eEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        305 RLWDLNQGQEVLHQEGHGKP-------VYCMSFQG--DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~--d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ..+|..+++.+.........       +..+...|  .+..++.++.++.+..+|..+++.+.....  .....+..  +
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~  276 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--D  276 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--E
T ss_pred             EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--E
Confidence            99999999887766432110       00011111  345778888899999999999988766542  33444444  3


Q ss_pred             CCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +..++.++.++.|..+|..+++.+....
T Consensus       277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             TTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            6678888899999999999998765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.99  E-value=4e-07  Score=82.31  Aligned_cols=249  Identities=8%  Similarity=-0.055  Sum_probs=140.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCce-----EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecC
Q psy11350        165 QHVATASWSGLCKLWTVPECEL-----VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG  239 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  239 (471)
                      .+|+.+. .+.|+.+++.....     ...+......+.+++|++.+..    ++++....+.|..+++..+.....+..
T Consensus         2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~----ly~~d~~~~~I~~~~~~g~~~~~~~~~   76 (267)
T 1npe_A            2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV----VYWTDISEPSIGRASLHGGEPTTIIRQ   76 (267)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE----EEEEETTTTEEEEEESSSCCCEEEECT
T ss_pred             cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE----EEEEECCCCEEEEEecCCCCcEEEEEC
Confidence            4555555 35788888765432     1122222245679999987653    455555678899999865432211111


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEe
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQEVLHQ  318 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  318 (471)
                      .                                       ......++++|++..|+.+. ..+.|.++++.........
T Consensus        77 ~---------------------------------------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  117 (267)
T 1npe_A           77 D---------------------------------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF  117 (267)
T ss_dssp             T---------------------------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             C---------------------------------------CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence            0                                       12467888888766555544 4678999998654322222


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCeeEEEe-cccCcCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q psy11350        319 EGHGKPVYCMSFQGDGSVVATGGL---DAFGRVWDLRTGRCIMFL-EGHLKSVFSVDFSPDGYHLA-TGSEDNAVKIWDL  393 (471)
Q Consensus       319 ~~~~~~v~~~~~s~d~~~l~t~~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~-s~s~dg~i~iwd~  393 (471)
                      .........++++|++..|+.+..   .+.|..+++.... ...+ .........++++|++..|+ +-...+.|.++|+
T Consensus       118 ~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence            222245689999997665555543   3688888875432 2222 22335689999999876665 4455688999999


Q ss_pred             CCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceee--ecccceeeeecCC
Q psy11350        394 RKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLL--LDIQKLTFKFDSD  462 (471)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~fs~dg~  462 (471)
                      ........+. ....+..+ ++  +....++..+..+....+.......+..++..  +....+++.|++.
T Consensus       197 ~g~~~~~~~~-~~~~P~gi-~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          197 AQPGRRKVLE-GLQYPFAV-TS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEEEEE-CCCSEEEE-EE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCceEEEec-CCCCceEE-EE--eCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            8654433322 11222222 22  22333333333333333433333334444432  2457888888874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.96  E-value=1.5e-07  Score=82.91  Aligned_cols=180  Identities=9%  Similarity=-0.049  Sum_probs=127.2

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL  234 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  234 (471)
                      ...+.|+ ++.+..+.+.+|.|+++|+.+++.+..+ .. .........+.+..    +.+..-.++.+.+||..+.+.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~----Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGER----LYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSC----EEEEESSSCEEEEEETTTTEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCE----EEEEEccCCEEEEEECCcCcEE
Confidence            4678887 3556667778889999999999988887 32 33333223334443    5556667899999999999888


Q ss_pred             eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Q psy11350        235 ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE  314 (471)
Q Consensus       235 ~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  314 (471)
                      .++.....                                        -..++  ++++.|+.+..++.|.++|..+.+.
T Consensus       130 ~ti~~~~e----------------------------------------GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A          130 RTTRYSGE----------------------------------------GWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EEEECSSC----------------------------------------CCCEE--EETTEEEEECSSSEEEEECTTTCCE
T ss_pred             EEEeCCCc----------------------------------------eeEEe--cCCCEEEEECCCCEEEEEcCCCCeE
Confidence            87764221                                        12233  4678888887799999999999988


Q ss_pred             EEEeeC--CC---CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-------------CcCEEEEEEcCCC
Q psy11350        315 VLHQEG--HG---KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-------------LKSVFSVDFSPDG  376 (471)
Q Consensus       315 ~~~~~~--~~---~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~sp~~  376 (471)
                      +..+.-  +.   ..++.+.|. +|.+.+..-.++.|.+.|..+++.+..+...             ....+.|||+|++
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~  246 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS  246 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence            877653  22   245677877 7766655556889999999999988876532             1357899999976


Q ss_pred             CEEEEEeC
Q psy11350        377 YHLATGSE  384 (471)
Q Consensus       377 ~~l~s~s~  384 (471)
                      +.|+..+.
T Consensus       247 ~rlfVTGK  254 (268)
T 3nok_A          247 GRIFMTGK  254 (268)
T ss_dssp             CCEEEEET
T ss_pred             CEEEEeCC
Confidence            65555443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=7.6e-08  Score=98.99  Aligned_cols=234  Identities=11%  Similarity=0.056  Sum_probs=148.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC-----------EEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCN-----------VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      +..|++++.++.|+-+|..+|+.+..+......           ...+++  .+.     .++.++.|+.|..+|..+|+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~-----~v~v~~~dg~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKG-----KVYVGAWDGRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETT-----EEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECC-----EEEEEcCCCEEEEEECCCCC
Confidence            567777887899999999999999887643210           012222  223     58888999999999999999


Q ss_pred             ceeeecCC-CC---cceEE-EEECCCCCEEEEEeC------CCe------------EEeccccccc--------------
Q psy11350        233 PLANLEGH-EP---FRVSR-IKFHPSGRFLGTCCW------DHS------------WRLDTPLANL--------------  275 (471)
Q Consensus       233 ~~~~~~~~-~~---~~v~~-~~~s~~~~~i~~~~~------d~~------------~~~~~~~~~~--------------  275 (471)
                      .+..+... ..   ..+.+ ..+  .+..+++++.      ++.            |.........              
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~  227 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR  227 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence            88877654 10   01111 001  1233333332      232            2221110000              


Q ss_pred             --c--C------CCCcceEEEEECCCCCEEEEEecCC-------------------eEEEEECCCCcEEEEeeC--CC--
Q psy11350        276 --E--G------HEPFRVSRIKFHPSGRFLGTCCWDH-------------------SWRLWDLNQGQEVLHQEG--HG--  322 (471)
Q Consensus       276 --~--~------~~~~~v~~l~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~--  322 (471)
                        .  +      ........++++|++..+++++.++                   .|..+|..+++.+..+..  |.  
T Consensus       228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence              0  0      0011123578899999888887664                   599999999998877653  21  


Q ss_pred             -----CCeEEEEEeCCC---CEEEEEeCCCeEEEEeCCCCeeEEEecccC-----------cCE----------------
Q psy11350        323 -----KPVYCMSFQGDG---SVVATGGLDAFGRVWDLRTGRCIMFLEGHL-----------KSV----------------  367 (471)
Q Consensus       323 -----~~v~~~~~s~d~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~-----------~~v----------------  367 (471)
                           ....-+....+|   ..++.++.+|.++++|..+|+.+..+....           .++                
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P  387 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP  387 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence                 112223444477   689999999999999999999887654211           011                


Q ss_pred             --------EEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEECCCc
Q psy11350        368 --------FSVDFSPDGYHLATGSED-------------------------------------------NAVKIWDLRKR  396 (471)
Q Consensus       368 --------~~~~~sp~~~~l~s~s~d-------------------------------------------g~i~iwd~~~~  396 (471)
                              ..++++|++.++++...+                                           |.|..||+.++
T Consensus       388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG  467 (677)
T 1kb0_A          388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ  467 (677)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred             CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence                    156889988888776432                                           78999999999


Q ss_pred             cchheecccC
Q psy11350        397 RLLKWCTQLL  406 (471)
Q Consensus       397 ~~~~~~~~~~  406 (471)
                      +.+..+....
T Consensus       468 ~~~W~~~~~~  477 (677)
T 1kb0_A          468 KAAWSVEHVS  477 (677)
T ss_dssp             EEEEEEEESS
T ss_pred             cEEeecCCCC
Confidence            9887765443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=3.1e-08  Score=97.41  Aligned_cols=228  Identities=11%  Similarity=0.049  Sum_probs=155.4

Q ss_pred             cCCCEEEEEeC-CCcEEEEeCCCCceEEEeecC-CCCEEEEEE-e-eCCCCCCccEEEEEe------------------C
Q psy11350        162 PDSQHVATASW-SGLCKLWTVPECELVQTFRGH-DCNVGAIEF-H-PLPSEGAVCSLASCA------------------Q  219 (471)
Q Consensus       162 ~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~-~-~~~~~~~~~~l~s~~------------------~  219 (471)
                      +||++|++... ++.|.+.|+.+.++...+.-. ......+++ . |++.     +++.++                  .
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-----~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-----YVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-----EEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-----EEEEecccccccCCCCccccccccc
Confidence            48999887765 457999999999988855422 245778888 4 8887     566663                  3


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe---------------EEe----------------
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---------------WRL----------------  268 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~---------------~~~----------------  268 (471)
                      ++.+.+.|..+.+...++....  ....++++|+|+++++.+.+..               +.+                
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             CceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            4679999999988877766432  3466889999999999986641               111                


Q ss_pred             -ccccccccCC------------CCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCc------------EEEEeeCCC
Q psy11350        269 -DTPLANLEGH------------EPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQ------------EVLHQEGHG  322 (471)
Q Consensus       269 -~~~~~~~~~~------------~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~  322 (471)
                       ...+..+...            ......++.++|||+++++++ .+.+|.++|+.+.+            .+.... -.
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG  330 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LG  330 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CC
T ss_pred             EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CC
Confidence             0001111111            011345799999999877765 57889999998653            233333 34


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC----------CeeEEEecccCcCE-----EEEEEcCCCCEEEEEeC---
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRT----------GRCIMFLEGHLKSV-----FSVDFSPDGYHLATGSE---  384 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~~~~sp~~~~l~s~s~---  384 (471)
                      .....++|+|+|...++...|+.|.+||+.+          .+.+.++..|-.+-     .++.++|||++|+++..   
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence            5567899999995555667899999999977          55677776664432     12345799999998753   


Q ss_pred             CCc----------EEEEECCCcc
Q psy11350        385 DNA----------VKIWDLRKRR  397 (471)
Q Consensus       385 dg~----------i~iwd~~~~~  397 (471)
                      |..          -.++|+..++
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cccccCCCCCCCcceEEEcCCCc
Confidence            332          2889996554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.92  E-value=4.8e-07  Score=79.10  Aligned_cols=184  Identities=10%  Similarity=-0.000  Sum_probs=127.9

Q ss_pred             cCeEEEEEecCCCEEEEEeCC--CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWS--GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      .-...+.|++ +.++.+.+..  ..|+++|+.+++.+..+..... .......+.+..    +....-.++.+.+||..+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~----ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDR----LIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTE----EEEEESSSSEEEEEETTT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCE----EEEEEeeCCEEEEEECCc
Confidence            3456889986 5555565654  4899999999999988865432 222323333432    455566789999999999


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECC
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLN  310 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  310 (471)
                      .+.+.++.....                                        -..++  +++..|+++..++.|.++|..
T Consensus        95 l~~~~ti~~~~~----------------------------------------Gwglt--~dg~~L~vSdgs~~l~~iDp~  132 (243)
T 3mbr_X           95 LTPRARFRYPGE----------------------------------------GWALT--SDDSHLYMSDGTAVIRKLDPD  132 (243)
T ss_dssp             TEEEEEEECSSC----------------------------------------CCEEE--ECSSCEEEECSSSEEEEECTT
T ss_pred             CcEEEEEeCCCC----------------------------------------ceEEe--eCCCEEEEECCCCeEEEEeCC
Confidence            988887764321                                        12333  456777777778999999999


Q ss_pred             CCcEEEEeeCC--C---CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc-------------CcCEEEEEE
Q psy11350        311 QGQEVLHQEGH--G---KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH-------------LKSVFSVDF  372 (471)
Q Consensus       311 ~~~~~~~~~~~--~---~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~  372 (471)
                      +.+.+..+.-.  .   ..++.+.+. +|.+.+..-.+..|.+.|..+++.+..+...             ....+.|+|
T Consensus       133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~  211 (243)
T 3mbr_X          133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF  211 (243)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred             CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence            99888776532  1   345667766 6766655556889999999999988876521             135789999


Q ss_pred             cCCCCEEEEEeCC
Q psy11350        373 SPDGYHLATGSED  385 (471)
Q Consensus       373 sp~~~~l~s~s~d  385 (471)
                      +|+++.|+..+.-
T Consensus       212 d~~~~~lfVTGK~  224 (243)
T 3mbr_X          212 DAEHDRLFVTGKR  224 (243)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             cCCCCEEEEECCC
Confidence            9987776666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.92  E-value=2.2e-07  Score=81.95  Aligned_cols=168  Identities=11%  Similarity=0.075  Sum_probs=116.2

Q ss_pred             ceEEEeecCCCC--EEEEEEeeCCCCCCccEEEEEeCCC--cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEE
Q psy11350        185 ELVQTFRGHDCN--VGAIEFHPLPSEGAVCSLASCAQDG--SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC  260 (471)
Q Consensus       185 ~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~  260 (471)
                      +.+.++ .|...  ...+.|+ ++.     ++.+++.+|  .|+++|+.+++.+..+.....                  
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~-----LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------   86 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGY-----FYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------   86 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTE-----EEEEEEETTEEEEEEECTTTCCEEEEEECCTT------------------
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCE-----EEEECCCCCCceEEEEECCCCcEEEEEecCCc------------------
Confidence            455666 44433  4788888 444     667777766  899999999988776653321                  


Q ss_pred             eCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE
Q psy11350        261 CWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       261 ~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  339 (471)
                                         . ---.+++  ++..|+... .++.+.+||..+.+.+.++.-....   ..+++|+..|+.
T Consensus        87 -------------------~-FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~  141 (262)
T 3nol_A           87 -------------------Y-FGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIM  141 (262)
T ss_dssp             -------------------C-CEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEE
T ss_pred             -------------------c-ceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEE
Confidence                               0 0122333  344555444 5789999999999999888643322   233457777777


Q ss_pred             EeCCCeEEEEeCCCCeeEEEecccC-----cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFLEGHL-----KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +..++.|.++|..+.+.+.++....     ..++.+.|. +|+..+..-.++.|.+.|..+++.+.++.
T Consensus       142 SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          142 SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence            7678889999999998887765421     345567886 77766666578899999999999988775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.90  E-value=9.8e-07  Score=84.03  Aligned_cols=226  Identities=10%  Similarity=-0.036  Sum_probs=141.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      ++..|++++.++.|..+|..+|+.+..+............. ++      .++.++.++.|..+|..+++.+..+.....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~------~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DG------LVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TT------EEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CC------EEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            45678888889999999999999887776443221112222 22      578888999999999999988877654332


Q ss_pred             cc----eEEEEECCCCCEEEEEeCCCeEEecc---cccc--ccCCCC------cceEEEEECC--CCCEEEEEecCCeEE
Q psy11350        243 FR----VSRIKFHPSGRFLGTCCWDHSWRLDT---PLAN--LEGHEP------FRVSRIKFHP--SGRFLGTCCWDHSWR  305 (471)
Q Consensus       243 ~~----v~~~~~s~~~~~i~~~~~d~~~~~~~---~~~~--~~~~~~------~~v~~l~~~~--~~~~l~~~~~dg~i~  305 (471)
                      ..    .......  +..+++++.++.+....   ....  .....+      ..+..+...|  .+..+++++.++.+.
T Consensus       175 ~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          175 SLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT  252 (376)
T ss_dssp             ----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred             ceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence            10    0111111  34566666665432211   1110  000000      0000011111  346788888899999


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc-cCcCEEEEEEcCCCCEEEEEeC
Q psy11350        306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG-HLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      .+|..+++.+.....  .....+..  ++..+++++.++.|..+|..+++.+..... ....+.....  .+..|+.++.
T Consensus       253 ~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          253 ALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS  326 (376)
T ss_dssp             EEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred             EEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence            999999988766542  23444444  456788888899999999999988776652 2222233333  2567888899


Q ss_pred             CCcEEEEECCCccchheec
Q psy11350        385 DNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       385 dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|.|.++|..+++.+....
T Consensus       327 ~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEe
Confidence            9999999999999876544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=1e-07  Score=88.82  Aligned_cols=217  Identities=10%  Similarity=0.018  Sum_probs=146.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      +..|..++.++.|..+|.. ++....+..+...+.++...+++.      +..++.++.|..+|.. ++....+..... 
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~------l~vgt~~~~l~~~d~~-g~~~~~~~~~~~-  177 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT------IYVGSNDNYLYAINPD-GTEKWRFKTNDA-  177 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC------EEEECTTSEEEEECTT-SCEEEEEECSSC-
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE------EEEEcCCCEEEEECCC-CCEeEEEecCCC-
Confidence            5668888889999999988 877777665555566666666664      7778888999999988 777666654433 


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEeccccc---cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeC
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  320 (471)
                      .+.++...+++..++..  .+.+.+.....   ..... ...+.++...++|. |.+++.++.|..+|. +++.+..+..
T Consensus       178 ~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~-~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~  252 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAG-YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT  252 (330)
T ss_dssp             CCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCS-SCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             ceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccC-CcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC
Confidence            56677777788755554  55544431111   11111 23477788887764 566777888999984 5666666554


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      ....+.++.+.+++. |..++.+|.|..+|. +++.+..+......+.++...++|. |..++.+|.+++...+..+
T Consensus       253 ~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          253 GKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred             CCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence            444444566665664 566778889999995 7777766665556677788877776 5568899999988766443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.88  E-value=6.5e-07  Score=83.37  Aligned_cols=233  Identities=12%  Similarity=0.006  Sum_probs=143.9

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec--------------------CCCCEEEEEEee-CCCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG--------------------HDCNVGAIEFHP-LPSEGAV  211 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--------------------h~~~v~~l~~~~-~~~~~~~  211 (471)
                      ....+++|+++|++++++..++.|..|+..+++.. .+..                    ....+.++++.+ ++.    
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~----   93 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ----   93 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE----
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc----
Confidence            34567789999998888888999999998765443 2221                    013578899997 553    


Q ss_pred             cEEEEEeCCCcEEEEeCCCCcceeee---cCCCCcceEEEEECC-CCCEEEEEeC-----------------CCe-EEec
Q psy11350        212 CSLASCAQDGSVKLWSLDKDTPLANL---EGHEPFRVSRIKFHP-SGRFLGTCCW-----------------DHS-WRLD  269 (471)
Q Consensus       212 ~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~s~-~~~~i~~~~~-----------------d~~-~~~~  269 (471)
                        |+.+...+.|..+|..++......   ..........+++.+ +|..+++-..                 .+. +.+.
T Consensus        94 --l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           94 --LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             --EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             --EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence              666655566888887655322111   111112578899999 8987666432                 122 2221


Q ss_pred             cccc---cccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECCCCc--EEEEeeCCCCCeEEEEEeCCCCEEEEEeC-
Q psy11350        270 TPLA---NLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLNQGQ--EVLHQEGHGKPVYCMSFQGDGSVVATGGL-  342 (471)
Q Consensus       270 ~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~t~~~-  342 (471)
                      ....   .+... ......++|+|+++.|+++ +..+.|.+|++....  ....+....+ ...+++.++|++.++... 
T Consensus       172 ~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          172 PSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             TTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence            1101   11100 1135679999999977666 456899999987521  1111111223 678999999987776654 


Q ss_pred             ---------CCeEEEEeCCCCeeEEEecccC----cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        343 ---------DAFGRVWDLRTGRCIMFLEGHL----KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       343 ---------dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                               .+.|..+|. .++.+..+....    ..++++++ .+++++++....+.|..+++...
T Consensus       250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                     467888886 477666665332    34667776 36666666667788999998644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.88  E-value=2.5e-08  Score=93.07  Aligned_cols=222  Identities=10%  Similarity=-0.041  Sum_probs=140.7

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE  238 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  238 (471)
                      .+..++ .|.+++.++.|..|| .+++....+..+...+.++...+++.      +..++.+  |..+|. +++.+..+.
T Consensus        26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~------l~v~t~~--l~~~d~-~g~~~~~~~   94 (330)
T 3hxj_A           26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT------IYFGSDK--VYAINP-DGTEKWRFD   94 (330)
T ss_dssp             EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE------ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred             eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc------EEEecCc--EEEECC-CCcEEEEEE
Confidence            344455 466777789999999 88888776655444456666665553      5555554  888886 666655544


Q ss_pred             CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc----cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Q psy11350        239 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA----NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE  314 (471)
Q Consensus       239 ~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  314 (471)
                      .... ......+.  +..+.+++.++.+.......    ..... ...+.++...+++. +++++.++.|..||.. ++.
T Consensus        95 ~~~~-~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~~~~-~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~  168 (330)
T 3hxj_A           95 TKKA-IVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRFKTK-KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE  168 (330)
T ss_dssp             C------CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEEECS-SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE
T ss_pred             CCCC-cccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEEcCC-CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE
Confidence            3322 22222333  55566676666533322111    11111 22345566666666 6667788999999998 877


Q ss_pred             EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        315 VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       315 ~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +..+......+.++.+.+++.+++..   +.|..|| .+++.+..+......+.++...++|. |..++.++.|..+|. 
T Consensus       169 ~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-  242 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-  242 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-
T ss_pred             eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-
Confidence            77766666667778887888755544   7899999 78877777666666788888888876 455667788888874 


Q ss_pred             Cccchheec
Q psy11350        395 KRRLLKWCT  403 (471)
Q Consensus       395 ~~~~~~~~~  403 (471)
                      +++.+..+.
T Consensus       243 ~g~~~~~~~  251 (330)
T 3hxj_A          243 DGTEKWRFK  251 (330)
T ss_dssp             TSCEEEEEE
T ss_pred             CCCEeEEee
Confidence            555554443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=1.7e-07  Score=96.21  Aligned_cols=237  Identities=12%  Similarity=0.072  Sum_probs=149.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCC----CCEEEEEEeeCCCCCCccEEEEEeC------CCcEEEEeCCCCcc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHD----CNVGAIEFHPLPSEGAVCSLASCAQ------DGSVKLWSLDKDTP  233 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~  233 (471)
                      +..|++++.|+.|..+|..+|+.+..+....    ..+.+--...++      .++.+..      +|.|..+|..+|+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~------~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG------KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC------EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            5678888899999999999999998776421    111110001122      3555443      58999999999998


Q ss_pred             eeeecCC--CC----------------------------cceEEEEECCCCCEEEEEeCCCe------------------
Q psy11350        234 LANLEGH--EP----------------------------FRVSRIKFHPSGRFLGTCCWDHS------------------  265 (471)
Q Consensus       234 ~~~~~~~--~~----------------------------~~v~~~~~s~~~~~i~~~~~d~~------------------  265 (471)
                      +..+...  ..                            .....+++.|++..+++++.++.                  
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            8776531  10                            01124688888888888776652                  


Q ss_pred             -E-Ee--ccccc--ccc--CC------CCcceEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeeCCC------
Q psy11350        266 -W-RL--DTPLA--NLE--GH------EPFRVSRIKFHPSGR---FLGTCCWDHSWRLWDLNQGQEVLHQEGHG------  322 (471)
Q Consensus       266 -~-~~--~~~~~--~~~--~~------~~~~v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------  322 (471)
                       + -+  .+...  .+.  .|      ...+.....+..+|+   .++.++.+|.++++|..+|+.+.......      
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence             1 11  11100  000  01      011222222223554   68889999999999999999874432111      


Q ss_pred             ------CCe------------------------EEEEEeCCCCEEEEEe-------------------------------
Q psy11350        323 ------KPV------------------------YCMSFQGDGSVVATGG-------------------------------  341 (471)
Q Consensus       323 ------~~v------------------------~~~~~s~d~~~l~t~~-------------------------------  341 (471)
                            .++                        ..++++|+..++++..                               
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence                  001                        1267888776665421                               


Q ss_pred             -----CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        342 -----LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       342 -----~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                           .+|.|..||+.+++.+-....+ .+.....+...+.+++.++.||.|+.||.++++.+..+.....
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~  500 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCC
Confidence                 2478999999999988776533 3333334445678899999999999999999999987766543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.84  E-value=3.5e-05  Score=81.04  Aligned_cols=237  Identities=11%  Similarity=0.003  Sum_probs=155.4

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-------CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-------HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...|.++...++|.+. .|+.++-|.+||..+++.......       ....|.++...+++.      |..|+.+ -|.
T Consensus       214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~------lWigt~~-Gl~  285 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR------LWIGTFN-DLN  285 (795)
T ss_dssp             CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC------EEEEESS-CEE
T ss_pred             CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC------EEEEeCC-hhh
Confidence            4578888888877644 455455599999877654433221       135699998888776      5666665 588


Q ss_pred             EEeCCCCcceeeecC------CCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---ccc------CCCCcceEEEEEC
Q psy11350        225 LWSLDKDTPLANLEG------HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLE------GHEPFRVSRIKFH  289 (471)
Q Consensus       225 iwd~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~------~~~~~~v~~l~~~  289 (471)
                      +||..++........      -....|.++...++|..-+.....|...+.....   .+.      .-....|.++...
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d  365 (795)
T 4a2l_A          286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED  365 (795)
T ss_dssp             EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred             eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence            999876654332211      1123799999999988665544455544421111   111      1113358999998


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCcEEEEeeC--------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG--------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      ++|+ |.+|+.++-|..||..+++.......        ....|.++...++|.+|..|+.++-|.+||..+++......
T Consensus       366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~  444 (795)
T 4a2l_A          366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ  444 (795)
T ss_dssp             TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred             CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence            8876 55688787899999887654332211        24578999999898856677777789999988876443221


Q ss_pred             ----ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        362 ----GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       362 ----~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                          .+...|.++...++|.+.+.. . +-|.+||..+++..
T Consensus       445 ~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          445 RNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFT  484 (795)
T ss_dssp             TTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEE
T ss_pred             CCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEE
Confidence                134579999998888866554 4 45888998876543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.84  E-value=7e-07  Score=79.68  Aligned_cols=170  Identities=12%  Similarity=0.063  Sum_probs=117.5

Q ss_pred             ceEEEeecCCC--CEEEEEEeeCCCCCCccEEEEEeC--CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEE
Q psy11350        185 ELVQTFRGHDC--NVGAIEFHPLPSEGAVCSLASCAQ--DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC  260 (471)
Q Consensus       185 ~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~  260 (471)
                      +.+.++. |..  ....+.|+|++.     ++++.+.  ++.|.++|+.+++.+..+.....                  
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~-----Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~------------------   65 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDT-----LFESTGLYGRSSVRQVALQTGKVENIHKMDDS------------------   65 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTE-----EEEEECSTTTCEEEEEETTTCCEEEEEECCTT------------------
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCe-----EEEECCCCCCCEEEEEECCCCCEEEEEecCCC------------------
Confidence            4555653 443  367999998753     4444443  58999999999988776643221                  


Q ss_pred             eCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE
Q psy11350        261 CWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       261 ~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  339 (471)
                                         . ....+++.  +..|+.+ -.++.+.++|..+.+.+..+......  ...+++||+.+++
T Consensus        66 -------------------~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~v  121 (266)
T 2iwa_A           66 -------------------Y-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYG  121 (266)
T ss_dssp             -------------------C-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEE
T ss_pred             -------------------c-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEE
Confidence                               1 12244554  4445444 45789999999999988887532111  2345668877777


Q ss_pred             EeCCCeEEEEeCCCCeeEEEecccC-----cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFLEGHL-----KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +..++.|.++|..+.+.+..+.-..     ..++.+.|. +|..++....++.|.+.|..+++.+.++.
T Consensus       122 s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          122 SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            7778999999999988887766321     247788888 77665665568899999999999988775

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.80  E-value=2.1e-05  Score=82.80  Aligned_cols=235  Identities=8%  Similarity=-0.014  Sum_probs=154.2

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-------CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-------HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ...|.++...++|.+. .|+.+ -|.+|+..++........       ....|.++...+++.      |-.|+.++-|.
T Consensus       262 ~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~------lWigt~~~Gl~  333 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG------MWLGTYFGGLN  333 (795)
T ss_dssp             CSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC------EEEEESSSCEE
T ss_pred             CCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC------EEEEECCCCeE
Confidence            3569999998888754 45545 589999877654433211       235799999988876      77788888899


Q ss_pred             EEeCCCCcceeeec-----CCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---cccc--------CCCCcceEEEEE
Q psy11350        225 LWSLDKDTPLANLE-----GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANLE--------GHEPFRVSRIKF  288 (471)
Q Consensus       225 iwd~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~~--------~~~~~~v~~l~~  288 (471)
                      .|+..++.......     .-....|.++...++|...+.....|...+....   ..+.        .-....|.++..
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          334 YYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             EECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             EeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            99875543222111     1112368999999888765543333554442211   1111        011346899999


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEEee----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc--
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE----GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG--  362 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--  362 (471)
                      .++++.|.+|+.++-|.+||..+++......    .+...|.++...++|.+.+.. . +-+.+||..+++.......  
T Consensus       414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~  491 (795)
T 4a2l_A          414 DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKD  491 (795)
T ss_dssp             ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTT
T ss_pred             cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEcccccc
Confidence            8888867788887889999998876433221    234679999998888866554 4 4588999887754432211  


Q ss_pred             ----cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        363 ----HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       363 ----h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                          +...|.++...++|.+.+...  +-|..||..+++.
T Consensus       492 ~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          492 GTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             CCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred             ccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence                235799999999888666554  5588899877654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.80  E-value=1.3e-06  Score=87.92  Aligned_cols=254  Identities=11%  Similarity=0.010  Sum_probs=151.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCC----CEEE-EEEeeCCCCCCccEEEEEeC------CCcEEEEeCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDC----NVGA-IEFHPLPSEGAVCSLASCAQ------DGSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~-l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~  232 (471)
                      +..|++++.|+.|..+|..+|+.+..+.....    .+.+ ... .++      .++.++.      ++.|..+|..+|+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g------~v~vg~~~~~~~~~g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD------TVLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT------EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC------EEEEEecCCccCCCCEEEEEECCCCc
Confidence            56788888899999999999999887653210    1111 111 122      3555554      7999999999999


Q ss_pred             ceeeecCCCCc-------------------------------------ceEEEEECCCCCEEEEEeCCC-----------
Q psy11350        233 PLANLEGHEPF-------------------------------------RVSRIKFHPSGRFLGTCCWDH-----------  264 (471)
Q Consensus       233 ~~~~~~~~~~~-------------------------------------~v~~~~~s~~~~~i~~~~~d~-----------  264 (471)
                      .+..+......                                     ....+++.++...++.+..+.           
T Consensus       188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd  267 (571)
T 2ad6_A          188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence            88766533210                                     001345666666665554321           


Q ss_pred             ------eEEe--ccccc--cc--cCC------CCcceEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeeCCC-
Q psy11350        265 ------SWRL--DTPLA--NL--EGH------EPFRVSRIKFHPSGR---FLGTCCWDHSWRLWDLNQGQEVLHQEGHG-  322 (471)
Q Consensus       265 ------~~~~--~~~~~--~~--~~~------~~~~v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  322 (471)
                            .+-+  .+...  .+  ..+      ......-+...++|+   .++.++.+|.++++|..+++.+....... 
T Consensus       268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence                  1111  11000  00  000      000111122234663   57778889999999999998876653211 


Q ss_pred             ------------CCe--------------------------EEEEEeCCCCEEEEEe-----------------------
Q psy11350        323 ------------KPV--------------------------YCMSFQGDGSVVATGG-----------------------  341 (471)
Q Consensus       323 ------------~~v--------------------------~~~~~s~d~~~l~t~~-----------------------  341 (471)
                                  .++                          ..++++|+..+|++..                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        111                          2467888877777653                       


Q ss_pred             --------------CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        342 --------------LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       342 --------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                                    .+|.|..||+.+++.+-++... ..+.+..+...+..++.++.||.|+.||.++++.+..+.....
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence                          3578999999999987776532 2333323333466788899999999999999999988765543


Q ss_pred             Cccceeeccccceeeeec
Q psy11350        408 NSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       408 ~~~~~~~~~~d~~~~~~~  425 (471)
                      .....+....+..+.+..
T Consensus       507 ~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          507 GIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CCSCCEEEEETTEEEEEE
T ss_pred             cEeeeEEEEECCEEEEEE
Confidence            322223333455544433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.79  E-value=9.6e-10  Score=104.76  Aligned_cols=145  Identities=19%  Similarity=0.110  Sum_probs=81.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      .+++++.||.|..||..+|+.+..+.. ..                                        +.+..+..++
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~----------------------------------------~~s~p~~~~g   49 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE-DP----------------------------------------VLQVPTHVEE   49 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC-CC----------------------------------------SCCCC-----
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC-CC----------------------------------------ceecceEcCC
Confidence            689999999999999999988776654 11                                        1122233466


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCCCCC-eE-EEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP-VY-CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~-~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                      ..+++++.||.|+.||..+++.+..+..+... +. +..+. ++..|++|+.++.|+.||..+|+.+..+..+.    ..
T Consensus        50 ~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~  124 (369)
T 2hz6_A           50 PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----AD  124 (369)
T ss_dssp             CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------
T ss_pred             CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cc
Confidence            67777889999999999988876655433110 10 00111 34567888899999999999999887776553    24


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        371 DFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      .++|++..+++++.|+.|+.||.++++.+..+.
T Consensus       125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             --------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            566788899999999999999999999876653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.78  E-value=1.2e-05  Score=74.20  Aligned_cols=223  Identities=12%  Similarity=0.017  Sum_probs=134.1

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-CC-cEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-DG-SVKLWSLDK  230 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-dg-~i~iwd~~~  230 (471)
                      .....++|+++|+++++-..++.|..||... +....+. .......+++.+++.     ++++... ++ .|..++..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~-----l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGD-----LVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSC-----EEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCc-----EEEEeccCCcceEEEEcCCC
Confidence            4677899999999777766789999999765 4443333 235688999999887     4444433 22 466677777


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe-EEecccc---cc------c---cC-CCCcceEEEEECCCCCEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WRLDTPL---AN------L---EG-HEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-~~~~~~~---~~------~---~~-~~~~~v~~l~~~~~~~~l~  296 (471)
                      ++...............++..+++..+++-...+. +.+....   ..      +   .. ..-.....+  +|++++|+
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            76433222222223345555555544444433444 3332110   00      0   00 011134555  78887666


Q ss_pred             EEe-cCCeEEEEECCC-CcE--EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE--EecccCcCEEEE
Q psy11350        297 TCC-WDHSWRLWDLNQ-GQE--VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM--FLEGHLKSVFSV  370 (471)
Q Consensus       297 ~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~  370 (471)
                      ++. ..+.|..|++.. ++.  ...+.. ......++++++|+++++....+.|.++|.. ++...  .+......++++
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~  260 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV  260 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence            554 567899999874 321  111111 1234568999999988877778899999975 65432  333333568999


Q ss_pred             EEc---CCCCEEEEEeCCC
Q psy11350        371 DFS---PDGYHLATGSEDN  386 (471)
Q Consensus       371 ~~s---p~~~~l~s~s~dg  386 (471)
                      +|.   |++..|+.++..+
T Consensus       261 a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          261 AFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECCSTTTTTEEEEEECTT
T ss_pred             EEecccCCCCEEEEECCCC
Confidence            998   8887777666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.76  E-value=3.2e-05  Score=72.63  Aligned_cols=250  Identities=9%  Similarity=-0.073  Sum_probs=151.6

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      ...+|.+..++ .+|+.+. ...|+..++........+.. ...+..++|.+....    ++.+-...+.|..+++....
T Consensus        34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~----ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRREL----VFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTE----EEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccE----EEEEeccCCceEEEecCCCC
Confidence            34456555563 4454444 46688888876555444443 345789999987663    44555567889999987655


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeC-CCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEec-C-CeEE
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCW-D-HSWR  305 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~  305 (471)
                      ....+.... .....+++.+.+..|+.... .+.+.....    ...+..........++++|.+..|+.... . +.|.
T Consensus       107 ~~~~~~~~~-~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          107 VEEVVSTGL-ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             CEEEECSSC-SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             ceEEEeCCC-CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            433333222 24678899886665554443 344333111    11121121235789999997666655543 4 7899


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      .+++............-...+.++++|++..|+.+ ...+.|..+|+........+........++++. .+.++++-..
T Consensus       186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~  264 (349)
T 3v64_C          186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWH  264 (349)
T ss_dssp             EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence            99987543322222233456899999866655555 456789999987543333333344567888883 5566666667


Q ss_pred             CCcEEEEECCCccchheecccCCCccc
Q psy11350        385 DNAVKIWDLRKRRLLKWCTQLLPNSIG  411 (471)
Q Consensus       385 dg~i~iwd~~~~~~~~~~~~~~~~~~~  411 (471)
                      .+.|..++..+++.+..+......+..
T Consensus       265 ~~~V~~~~~~~G~~~~~i~~~~~~p~g  291 (349)
T 3v64_C          265 TKSINSANKFTGKNQEIIRNKLHFPMD  291 (349)
T ss_dssp             TTEEEEEETTTCCSCEEEECSCSCCCC
T ss_pred             CCeEEEEEccCCCccEEeccCCCCCce
Confidence            788999997788777766544333333

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.75  E-value=2.6e-06  Score=74.42  Aligned_cols=168  Identities=17%  Similarity=0.128  Sum_probs=115.8

Q ss_pred             ceEEEeecCC--CCEEEEEEeeCCCCCCccEEEEEeCCC--cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEE
Q psy11350        185 ELVQTFRGHD--CNVGAIEFHPLPSEGAVCSLASCAQDG--SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC  260 (471)
Q Consensus       185 ~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~  260 (471)
                      +.+.++ .|.  .....+.|++ +.     ++.+.+.+|  .|+.+|+.+++.+..+.....                  
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~-----LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~------------------   64 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GH-----LYESTGETGRSSVRKVDLETGRILQRAEVPPP------------------   64 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TE-----EEEEECCTTSCEEEEEETTTCCEEEEEECCTT------------------
T ss_pred             EEEEEc-CCCCccccccEEEEC-CE-----EEEECCCCCCceEEEEECCCCCEEEEEeCCCC------------------
Confidence            455555 454  3466899987 33     566666654  899999999988777654331                  


Q ss_pred             eCCCeEEeccccccccCCCCcceEEEEECCCCCEEE-EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE
Q psy11350        261 CWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       261 ~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  339 (471)
                                         . ---.+++.  ++.|+ ..-.++.+.+||..+.+.+.++.....+ ..++  +++..|+.
T Consensus        65 -------------------~-fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~v  119 (243)
T 3mbr_X           65 -------------------Y-FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYM  119 (243)
T ss_dssp             -------------------C-CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEE
T ss_pred             -------------------c-ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEE
Confidence                               0 01223332  34344 4446889999999999999888754332 3444  56776666


Q ss_pred             EeCCCeEEEEeCCCCeeEEEecccC-----cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        340 GGLDAFGRVWDLRTGRCIMFLEGHL-----KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       340 ~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +..++.|.++|..+.+.+.++....     ..++.+.|. +|+.++..-.+..|.+.|.++++.+.++.
T Consensus       120 Sdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          120 SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             ECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            6678999999999998887776422     346677776 67766666568899999999999988775

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=2.1e-06  Score=88.15  Aligned_cols=190  Identities=13%  Similarity=0.060  Sum_probs=115.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC----------E-EEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCN----------V-GAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  232 (471)
                      +..|++++.++.|+-+|..+|+.+..+......          + ..+.+.  +.     .++.++.|+.|..+|..+|+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~v~v~~~dg~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD-----KVYVGTLDGRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT-----EEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC-----EEEEEcCCCEEEEEECCCCC
Confidence            567777888999999999999999887643211          0 112222  22     58888899999999999999


Q ss_pred             ceeeecCCCCcceEEEEECC--CCCEEEEEeC----------------CCe--EEecccc-ccc---------------c
Q psy11350        233 PLANLEGHEPFRVSRIKFHP--SGRFLGTCCW----------------DHS--WRLDTPL-ANL---------------E  276 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~----------------d~~--~~~~~~~-~~~---------------~  276 (471)
                      .+..+..........+.-+|  .+..++++..                +|.  |...... ...               .
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  218 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence            88776643210000000011  1223333322                222  3222100 000               0


Q ss_pred             C-------CCCcceEEEEECCCCCEEEEEecCC-------------------eEEEEECCCCcEEEEeeC--CC------
Q psy11350        277 G-------HEPFRVSRIKFHPSGRFLGTCCWDH-------------------SWRLWDLNQGQEVLHQEG--HG------  322 (471)
Q Consensus       277 ~-------~~~~~v~~l~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~------  322 (471)
                      +       ........+++.|+...+++++.++                   .|..+|..+++.+..+..  |.      
T Consensus       219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~  298 (668)
T 1kv9_A          219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA  298 (668)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence            0       0001123478888888888888776                   399999999998877653  32      


Q ss_pred             -CCeEEEEEeCCCC---EEEEEeCCCeEEEEeCCCCeeEEEe
Q psy11350        323 -KPVYCMSFQGDGS---VVATGGLDAFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       323 -~~v~~~~~s~d~~---~l~t~~~dg~i~iwd~~~~~~~~~~  360 (471)
                       .+.....+..+|+   .++.++.+|.++++|..+|+.+...
T Consensus       299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence             2333333444675   6889999999999999999987443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.73  E-value=4.1e-06  Score=84.31  Aligned_cols=261  Identities=13%  Similarity=0.012  Sum_probs=154.4

Q ss_pred             EEEecCCCE----EEEEeCCCcEEEEeCCCCceEEEeecCCC----CEEE-EEEeeCCCCCCccEEEEEe------CCCc
Q psy11350        158 CSFSPDSQH----VATASWSGLCKLWTVPECELVQTFRGHDC----NVGA-IEFHPLPSEGAVCSLASCA------QDGS  222 (471)
Q Consensus       158 ~~~s~~~~~----l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~-l~~~~~~~~~~~~~l~s~~------~dg~  222 (471)
                      ++++|.+..    |+.++.|+.|.-+|..+|+.+........    .+.+ ... .++      .++.++      .+|.
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g------~V~vg~~g~e~g~~g~  183 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD------KVIIGSSGAELGVRGY  183 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT------EEEECCBCGGGTCCCE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC------EEEEEecccccCCCCe
Confidence            345444444    88888899999999999999877653220    1111 111 122      355554      3799


Q ss_pred             EEEEeCCCCcceeeecCCCCc-------------------------------------ceEEEEECCCCCEEEEEeCCC-
Q psy11350        223 VKLWSLDKDTPLANLEGHEPF-------------------------------------RVSRIKFHPSGRFLGTCCWDH-  264 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~-------------------------------------~v~~~~~s~~~~~i~~~~~d~-  264 (471)
                      |..+|..+|+.+..+......                                     .-..+++.++...++.+..+. 
T Consensus       184 v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~  263 (599)
T 1w6s_A          184 LTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPA  263 (599)
T ss_dssp             EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred             EEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCc
Confidence            999999999988766543211                                     001345666777777666542 


Q ss_pred             ---------------e-EEe--ccccc----cccCCC------CcceEEEEEC-CCC---CEEEEEecCCeEEEEECCCC
Q psy11350        265 ---------------S-WRL--DTPLA----NLEGHE------PFRVSRIKFH-PSG---RFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       265 ---------------~-~~~--~~~~~----~~~~~~------~~~v~~l~~~-~~~---~~l~~~~~dg~i~iwd~~~~  312 (471)
                                     . +-+  .+...    ....|.      .....-+... .+|   ..++.++.+|.++++|.+++
T Consensus       264 p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          264 PWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             CSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC
Confidence                           1 111  11000    001110      0011112222 466   46777889999999999999


Q ss_pred             cEEEEeeCC-------------CCCe--------------------------EEEEEeCCCCEEEEEe------------
Q psy11350        313 QEVLHQEGH-------------GKPV--------------------------YCMSFQGDGSVVATGG------------  341 (471)
Q Consensus       313 ~~~~~~~~~-------------~~~v--------------------------~~~~~s~d~~~l~t~~------------  341 (471)
                      +.+......             ..++                          ..++++|+..++++..            
T Consensus       344 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  423 (599)
T 1w6s_A          344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML  423 (599)
T ss_dssp             CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred             CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc
Confidence            987655311             1111                          2456777766665431            


Q ss_pred             ---------------------------CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        342 ---------------------------LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       342 ---------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                                                 ..|.|..||+.+++.+-.... ..++..-.+...+.+++.++.||.|+.||.+
T Consensus       424 ~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence                                       347899999999988766542 1222211122256778889999999999999


Q ss_pred             CccchheecccCCCccceeeccccceeeeecc
Q psy11350        395 KRRLLKWCTQLLPNSIGVTSLLTDLYIDVLES  426 (471)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  426 (471)
                      +|+.+..+..........+....+....+...
T Consensus       503 tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          503 TGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             TCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence            99999887655444334444445555544433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=3.6e-05  Score=73.42  Aligned_cols=248  Identities=9%  Similarity=-0.069  Sum_probs=152.5

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        156 SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      +|.+..+ ..+|+.+. ...|+.+++........+.. ...+..++|.+....    ++++-...+.|..+++.......
T Consensus        80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~----ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRREL----VFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTE----EEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCe----EEEEeCCCCcEEEEecCCCCcEE
Confidence            3444444 33454444 56788899876655544443 345789999986653    45555567889999987654333


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeC-CCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEec-C-CeEEEEE
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCW-D-HSWRLWD  308 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd  308 (471)
                      .+.... .....+++.+.+..|+.... .+.+.....    ...+..........+++.|.+..|+.+.. . +.|..++
T Consensus       153 ~~~~~~-~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          153 VVSTGL-ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             EECSSC-SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCC-CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            332222 24567888886665555443 344433211    11122222235789999997776666554 3 6899999


Q ss_pred             CCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCc
Q psy11350        309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA  387 (471)
Q Consensus       309 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  387 (471)
                      +............-...+.|+|+|++..|+.+ +..+.|..+|+........+........+|++ ..+.++++-...+.
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~  310 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS  310 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe
Confidence            87543333333334457899999866655554 45678999998654433334334456788888 35566667677888


Q ss_pred             EEEEECCCccchheecccCCCccce
Q psy11350        388 VKIWDLRKRRLLKWCTQLLPNSIGV  412 (471)
Q Consensus       388 i~iwd~~~~~~~~~~~~~~~~~~~~  412 (471)
                      |..++..+++.+..+......+..+
T Consensus       311 V~~~~~~~G~~~~~i~~~~~~p~gi  335 (386)
T 3v65_B          311 INSANKFTGKNQEIIRNKLHFPMDI  335 (386)
T ss_dssp             EEEEETTTCCSCEEEECSCSCCCCE
T ss_pred             EEEEECCCCcceEEEccCCCCCceE
Confidence            9999977888777776544433333

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=6e-05  Score=79.10  Aligned_cols=236  Identities=11%  Similarity=-0.063  Sum_probs=148.3

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee--------------cCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR--------------GHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      ...|.++...++|. |..|+..+-|.+++..++.......              .....|.++...+.+.      |-.|
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~------lWig  329 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN------IWIG  329 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC------EEEE
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC------EEEE
Confidence            45688888887775 5567765678899987655332211              1345788998888775      7778


Q ss_pred             eCCCcEEEEeCCCCcceeeec--------CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---ccc---CCCCcce
Q psy11350        218 AQDGSVKLWSLDKDTPLANLE--------GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLE---GHEPFRV  283 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~---~~~~~~v  283 (471)
                      +.++-|..|+..++.......        .-....|.++...++|...+.....|...+.....   .+.   ......|
T Consensus       330 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v  409 (781)
T 3v9f_A          330 TWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSV  409 (781)
T ss_dssp             EBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred             ecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence            877889999976554322111        11223689999988887665443555544422111   110   1123468


Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        284 SRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       284 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      .++...+++. |.+|+.++-|..+|..+++......  .....|.++...++|.+.+ |+. +-|.+||..+++......
T Consensus       410 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          410 LCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             EEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred             EEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence            8999887776 4557777789999988765433221  1346799999888876554 444 568899988765433222


Q ss_pred             cc-----CcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        362 GH-----LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       362 ~h-----~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      ..     ...|.++...++|.+.+. +.++-|..||..+++.
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEE
T ss_pred             CcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeE
Confidence            12     357999999988886654 4444477788876643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=5.2e-06  Score=73.17  Aligned_cols=168  Identities=10%  Similarity=0.052  Sum_probs=116.4

Q ss_pred             ceEEEeecCCC--CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeC
Q psy11350        185 ELVQTFRGHDC--NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  262 (471)
Q Consensus       185 ~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~  262 (471)
                      +.+.++ .|..  ....+.|+. +.     ++.+.+.+|.|+++|+.+++.+..+ ....                    
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~-----Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~--------------------   95 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GH-----FFESTGHQGTLRQLSLESAQPVWME-RLGN--------------------   95 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TE-----EEEEETTTTEEEECCSSCSSCSEEE-ECTT--------------------
T ss_pred             EEEEEE-cCCCccccceEEEEC-CE-----EEEEcCCCCEEEEEECCCCcEEeEE-CCCC--------------------
Confidence            445555 3433  346888874 33     6788888899999999999877665 2211                    


Q ss_pred             CCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC
Q psy11350        263 DHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL  342 (471)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~  342 (471)
                                        .--..+++.. ++.....-.++.+.+||..+.+.+.++...... ..++  +|++.|+.+..
T Consensus        96 ------------------~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdG  153 (268)
T 3nok_A           96 ------------------IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDG  153 (268)
T ss_dssp             ------------------CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECS
T ss_pred             ------------------cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECC
Confidence                              0112344432 233334446889999999999999888643222 3344  56788888778


Q ss_pred             CCeEEEEeCCCCeeEEEecccC-----cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        343 DAFGRVWDLRTGRCIMFLEGHL-----KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       343 dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ++.|.++|..+.+.+.++....     ..++.+.|. +|+.++..-.++.|.+.|..+++.+.++.
T Consensus       154 s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          154 GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            9999999999998887765322     245778887 77666665578899999999999988775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.66  E-value=3.4e-05  Score=68.31  Aligned_cols=207  Identities=17%  Similarity=0.111  Sum_probs=131.1

Q ss_pred             eecCCcCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeec-CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRG-HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      +.|-...+..++|+|++..|+ +...++.|...|+. ++.++.+.- -....-.|++.+++.     ++++.-.++.+.+
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-----~~vs~E~~~~l~~   95 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-----FVISDERDYAIYV   95 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-----EEEEETTTTEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-----EEEEECCCCcEEE
Confidence            335567899999999877655 56778899999987 888887642 225677899988775     5566656788888


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEE
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR  305 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  305 (471)
                      +++.....+.....        +.                    .+.  ...........|+|+|.++.|+++.......
T Consensus        96 ~~v~~~~~i~~~~~--------~~--------------------~~~--~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~  145 (255)
T 3qqz_A           96 ISLTPNSEVKILKK--------IK--------------------IPL--QESPTNCGFEGLAYSRQDHTFWFFKEKNPIE  145 (255)
T ss_dssp             EEECTTCCEEEEEE--------EE--------------------CCC--SSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred             EEcCCCCeeeeeee--------ec--------------------ccc--ccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence            88765432211100        00                    000  0011133578899999887777776655445


Q ss_pred             EEECC---CCcEEEEee-------CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeEEEeccc---------Cc
Q psy11350        306 LWDLN---QGQEVLHQE-------GHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCIMFLEGH---------LK  365 (471)
Q Consensus       306 iwd~~---~~~~~~~~~-------~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h---------~~  365 (471)
                      +|.+.   ....+..+.       .+...+.+++++| .+.+++.....+.+.++|.. |+.+..+.-.         ..
T Consensus       146 i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~  224 (255)
T 3qqz_A          146 VYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIK  224 (255)
T ss_dssp             EEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCC
T ss_pred             EEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccC
Confidence            55443   111111111       1334578999999 45667777778889999965 5555444321         13


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      ....|+|.++|+..++ +..+.++.+.
T Consensus       225 qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          225 QAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             SEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            6789999999985555 6777666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=8.2e-05  Score=78.03  Aligned_cols=235  Identities=11%  Similarity=0.014  Sum_probs=148.6

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee---------cCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR---------GHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ...|.++...++|. |..|+.++-|..|+..+........         .....|.++...+++.      |..|+.++-
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~------lWigt~~~G  384 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK------LWIGTDGGG  384 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC------EEEEEBSSC
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC------EEEEeCCCc
Confidence            45789999888876 6667778889999977654332211         1235688888877775      677776777


Q ss_pred             EEEEeCCCCcceeeec--CCCCcceEEEEECCCCCEEEEEeC-CCeEEecccc---cccc--CCCCcceEEEEECCCCCE
Q psy11350        223 VKLWSLDKDTPLANLE--GHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDTPL---ANLE--GHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~~~---~~~~--~~~~~~v~~l~~~~~~~~  294 (471)
                      |..|+..++.......  ......|.++...++|.+.+ |+. .|...+....   ..+.  ......|.++...+++. 
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-  462 (781)
T 3v9f_A          385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-  462 (781)
T ss_dssp             EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-
T ss_pred             EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-
Confidence            9999976543222111  11223788999888887665 444 4544442211   1111  11234689999888776 


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCC-----CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc---cCcC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGH-----GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG---HLKS  366 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---h~~~  366 (471)
                      |..|+. +-|.+||..+++........     ...|.++...++|.+.+. +.++-+..||..+++.......   ....
T Consensus       463 lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~  540 (781)
T 3v9f_A          463 IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNT  540 (781)
T ss_dssp             EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSC
T ss_pred             EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCe
Confidence            555565 56999998876543332222     467899999988876554 4434477899877654332111   2356


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCccc
Q psy11350        367 VFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       367 v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      |.++...++|.+.++. .+|.|..||..+++.
T Consensus       541 i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          541 INQIYRSSKGQMWLAT-GEGLVCFPSARNFDY  571 (781)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEESCTTTCCC
T ss_pred             eEEEEECCCCCEEEEE-CCCceEEECCCCCcE
Confidence            8999998888866554 466658888877653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.60  E-value=0.00022  Score=65.91  Aligned_cols=209  Identities=10%  Similarity=-0.055  Sum_probs=126.7

Q ss_pred             CcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCC----CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        152 TRPISYCSFSPDSQHVATAS-WSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      -..+.+++|++.+..|+.+. .++.|..+++.+    ......+...-.....+++.+.+.+    ++++-...+.|.+.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~----ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCe----EEEEECCCCEEEEE
Confidence            45678999999776666554 568999999875    2222223222234568888865542    44555667788888


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC--CeE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD--HSW  304 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i  304 (471)
                      ++........+...                                       ......++++|.+..|+.+...  +.|
T Consensus       105 ~~~g~~~~~~~~~~---------------------------------------~~~P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A          105 DTKGVKRKTLFREN---------------------------------------GSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             ETTSSSEEEEEECT---------------------------------------TCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             eCCCCceEEEEECC---------------------------------------CCCcceEEeCCCCCEEEEEccCCCCeE
Confidence            87533211111100                                       1246778888866665555443  678


Q ss_pred             EEEECCCCcEEEEe-eCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEec--ccCcCEEEEEEcCCCCEEE
Q psy11350        305 RLWDLNQGQEVLHQ-EGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       305 ~iwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~  380 (471)
                      ..+++.... ...+ ...-...+.++++|++..|+.+. ..+.|..+|+..........  .......++++. .+.+++
T Consensus       146 ~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~  223 (316)
T 1ijq_A          146 KKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW  223 (316)
T ss_dssp             EEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred             EEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEE
Confidence            888875432 2222 22335578999999766665554 56789999987432221222  223457788885 456666


Q ss_pred             EEeCCCcEEEEECCCccchheeccc
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +-...+.|..++..+++.+..+...
T Consensus       224 ~d~~~~~V~~~~~~~g~~~~~i~~~  248 (316)
T 1ijq_A          224 TDIINEAIFSANRLTGSDVNLLAEN  248 (316)
T ss_dssp             EETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EECCCCeEEEEeCCCCcceEEEecC
Confidence            6667788999998888877766543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.59  E-value=2.6e-05  Score=78.44  Aligned_cols=188  Identities=10%  Similarity=0.038  Sum_probs=109.6

Q ss_pred             CCEEEEEeC-CCcEEEEeC-CCCceEEEeecCCCC----------E-EEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        164 SQHVATASW-SGLCKLWTV-PECELVQTFRGHDCN----------V-GAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       164 ~~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      +..|++++. ++.|.-+|. .+|+.+..+......          + ..++..  +.     .++.++.|+.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~v~v~~~dg~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AG-----QIVKKQANGHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TT-----EEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CC-----EEEEEeCCCEEEEEECCC
Confidence            456777777 899999999 899998877532210          0 112221  22     588888899999999999


Q ss_pred             CcceeeecCCCC---cceE-EEEECCCCCEEEEEeC------CCe------------EEecccccccc------------
Q psy11350        231 DTPLANLEGHEP---FRVS-RIKFHPSGRFLGTCCW------DHS------------WRLDTPLANLE------------  276 (471)
Q Consensus       231 ~~~~~~~~~~~~---~~v~-~~~~s~~~~~i~~~~~------d~~------------~~~~~~~~~~~------------  276 (471)
                      |+.+..+.....   ..+. ....  .+..+++++.      ++.            |..........            
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~  212 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence            998876653220   0111 0011  1233344332      333            22211100000            


Q ss_pred             -----------------CCCCc-ceEEEEECCCCCEEEEEecC----------------CeEEEEECCCCcEEEEeeC--
Q psy11350        277 -----------------GHEPF-RVSRIKFHPSGRFLGTCCWD----------------HSWRLWDLNQGQEVLHQEG--  320 (471)
Q Consensus       277 -----------------~~~~~-~v~~l~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~--  320 (471)
                                       .+... ....+++.+....++.++.+                +.|..+|..+++.+..+..  
T Consensus       213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~  292 (571)
T 2ad6_A          213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence                             00000 01235666766677666532                3699999999998877653  


Q ss_pred             CC--------CCeEEEEEeCCCC---EEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        321 HG--------KPVYCMSFQGDGS---VVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       321 ~~--------~~v~~~~~s~d~~---~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      |.        .++. +....+|+   .++.++.+|.++++|..+|+.+..+.
T Consensus       293 ~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          293 HDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             TCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            21        2222 22334674   67788899999999999998876654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.56  E-value=1e-05  Score=81.52  Aligned_cols=260  Identities=12%  Similarity=-0.009  Sum_probs=150.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCC----CEE-EEEEeeCCCCCCccEEEEEe------CCCcEEEEeCCCCc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDC----NVG-AIEFHPLPSEGAVCSLASCA------QDGSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~  232 (471)
                      +..|+.++.++.|.-+|..+|+.+..+.....    .+. ......+...... .++.++      .+|.|..+|..+|+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~-~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCE-EEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcE-EEEEeccccccCCCCEEEEEECCCCC
Confidence            56788888999999999999999887664321    111 1111222101010 244444      37899999999998


Q ss_pred             ceeeecCCCC----------------------------------------cceEEEEECCCCCEEEEEeCC---------
Q psy11350        233 PLANLEGHEP----------------------------------------FRVSRIKFHPSGRFLGTCCWD---------  263 (471)
Q Consensus       233 ~~~~~~~~~~----------------------------------------~~v~~~~~s~~~~~i~~~~~d---------  263 (471)
                      .+........                                        ..-..+++.|+...++++..+         
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            7765543210                                        001235666777777766531         


Q ss_pred             ---------------CeEE-e--ccccc--cc--cCCC------CcceEEEEEC-CCCC---EEEEEecCCeEEEEECCC
Q psy11350        264 ---------------HSWR-L--DTPLA--NL--EGHE------PFRVSRIKFH-PSGR---FLGTCCWDHSWRLWDLNQ  311 (471)
Q Consensus       264 ---------------~~~~-~--~~~~~--~~--~~~~------~~~v~~l~~~-~~~~---~l~~~~~dg~i~iwd~~~  311 (471)
                                     +.+. +  .+...  .+  ..|.      .....-+... .+|+   .++.++.+|.++++|..+
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                           1211 1  11100  00  0110      0011112221 4564   688899999999999999


Q ss_pred             CcEEEEeeCCC-------------CCe--------------------------------EEEEEeCCCCEEEEEe-----
Q psy11350        312 GQEVLHQEGHG-------------KPV--------------------------------YCMSFQGDGSVVATGG-----  341 (471)
Q Consensus       312 ~~~~~~~~~~~-------------~~v--------------------------------~~~~~s~d~~~l~t~~-----  341 (471)
                      ++.+..+....             .++                                ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            99876654321             000                                1346677555555432     


Q ss_pred             ----------------------------CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        342 ----------------------------LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       342 ----------------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                                                  .+|.|..||+.+++.+-....+ .++..-.....+.+++.|+.||.|+.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence                                        2578999999999887666532 22222112224678888999999999999


Q ss_pred             CCccchheecccCCCccceeeccccceeeeec
Q psy11350        394 RKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  425 (471)
                      ++++.+..+..........++...+....+..
T Consensus       515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          515 KSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            99999988876544333334433455444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.54  E-value=0.00025  Score=65.53  Aligned_cols=185  Identities=10%  Similarity=-0.091  Sum_probs=114.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC---cceeeecCCCC
Q psy11350        166 HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD---TPLANLEGHEP  242 (471)
Q Consensus       166 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~  242 (471)
                      +|+.+. ...|+..|+.+.+....+.. ...+.+++|.+.+..    ++++-...+.|..+++...   .....+..   
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~----ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~---   73 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVIS---   73 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTE----EEEEETTTTEEEEEEC--------CEEEEC---
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCE----EEEEECCCCcEEEEECCCCCCCcccEEEEe---
Confidence            344444 46789999887766555543 456789999987652    4555556688988887642   11111100   


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEE-EEecCCeEEEEECCCCcEEEEeeCC
Q psy11350        243 FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG-TCCWDHSWRLWDLNQGQEVLHQEGH  321 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~  321 (471)
                                                        .. -.....+++.+.+..|+ +-...+.|.++++........+...
T Consensus        74 ----------------------------------~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~  118 (316)
T 1ijq_A           74 ----------------------------------RD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN  118 (316)
T ss_dssp             ----------------------------------SS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT
T ss_pred             ----------------------------------CC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECC
Confidence                                              00 11356788886555444 4456788999998754433333333


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCC--CeEEEEeCCCCeeEEEe-cccCcCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q psy11350        322 GKPVYCMSFQGDGSVVATGGLD--AFGRVWDLRTGRCIMFL-EGHLKSVFSVDFSPDGYHLATG-SEDNAVKIWDLRK  395 (471)
Q Consensus       322 ~~~v~~~~~s~d~~~l~t~~~d--g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~-s~dg~i~iwd~~~  395 (471)
                      ......++++|.+..|+.+...  +.|..+++... ....+ ...-.....++++|++..|+.+ +..+.|..+|+..
T Consensus       119 ~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            4567899999966655555443  68888887533 33333 2234568899999876666554 4567899999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.54  E-value=5.2e-06  Score=85.24  Aligned_cols=236  Identities=11%  Similarity=0.093  Sum_probs=133.9

Q ss_pred             EEEEec-CCCEEEEEeCCC-----------cEEEEeCCCCceE--EEee-cCCCCEEEEEEeeCCCCCCccEEEEEe-CC
Q psy11350        157 YCSFSP-DSQHVATASWSG-----------LCKLWTVPECELV--QTFR-GHDCNVGAIEFHPLPSEGAVCSLASCA-QD  220 (471)
Q Consensus       157 ~~~~s~-~~~~l~tg~~dg-----------~i~iwd~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~-~d  220 (471)
                      ++++.| ++++++.|+.+.           .+.+||+.+++..  ..+. .+.....++++.+++.     +++.|+ .+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-----lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-----IVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-----EEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-----EEEeCCCCC
Confidence            556777 888888887543           5889999876532  2222 2233334567777776     677777 45


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEe-CCCe-----EEecccc-cc---ccC----CCCcceEEE
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS-----WRLDTPL-AN---LEG----HEPFRVSRI  286 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~-~d~~-----~~~~~~~-~~---~~~----~~~~~v~~l  286 (471)
                      ..+.+||..+++....-.......-.+++..++|+.++.|+ .++.     +.+..+. ..   +..    .....-...
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~  344 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  344 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence            68999998876543332222222334567778999999988 3421     2211110 00   000    000000001


Q ss_pred             EECCCCCEEEEEecCC---------eEEEEECCCCcEEEEeeCCC---------CCeEEEEEeC-CCCEEEEEeCCC---
Q psy11350        287 KFHPSGRFLGTCCWDH---------SWRLWDLNQGQEVLHQEGHG---------KPVYCMSFQG-DGSVVATGGLDA---  344 (471)
Q Consensus       287 ~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~-d~~~l~t~~~dg---  344 (471)
                      .+..++..++.++.+|         .+..||..+.........+.         ..-.++.|.. ++++++.|+.++   
T Consensus       345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~  424 (656)
T 1k3i_A          345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  424 (656)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence            1223455555555443         56788888765433222111         1234555544 778888888543   


Q ss_pred             --------eEEEEeCCCCeeEEEe--cccCcC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCcc
Q psy11350        345 --------FGRVWDLRTGRCIMFL--EGHLKS-VFSVDFSPDGYHLATGSED-----------NAVKIWDLRKRR  397 (471)
Q Consensus       345 --------~i~iwd~~~~~~~~~~--~~h~~~-v~~~~~sp~~~~l~s~s~d-----------g~i~iwd~~~~~  397 (471)
                              .|.+||..+..-....  ..+... -.+++..|++++++.|+.+           ..+.+||..+.+
T Consensus       425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                    6888888776544332  112222 2345667899999999854           468999987764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.53  E-value=8.7e-05  Score=68.62  Aligned_cols=239  Identities=10%  Similarity=-0.015  Sum_probs=141.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        166 HVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       166 ~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      +|+.+. ...|+.+++....  ....+.+ ...+.+++|.+....    ++.+-...+.|..+++..+.....+....-.
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~----lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGL----IYWSDVSEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTE----EEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCE----EEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence            344443 5678888987653  2222222 234668999986652    4555566788999998765322111111112


Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEE
Q psy11350        244 RVSRIKFHPSGRFLGTCC-WDHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLWDLNQGQEVL  316 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~-~d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~  316 (471)
                      ....+++.+.+..|+.+. ..+.+.+...    ...+..........+++.|.+..|+.+..  .+.|..+++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            466788887655555443 3344333211    11222122335789999997777666653  5789999886433222


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        317 HQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       317 ~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .....-...+.++++|++..|+.+ +..+.|..+|+........+.+......++++. .+.++++-...+.|..++..+
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence            222233456899999966655555 456789999986443322333344567888885 345566666778899999988


Q ss_pred             ccchheecccCCCccc
Q psy11350        396 RRLLKWCTQLLPNSIG  411 (471)
Q Consensus       396 ~~~~~~~~~~~~~~~~  411 (471)
                      ++.+..+......+..
T Consensus       239 G~~~~~i~~~~~~P~~  254 (318)
T 3sov_A          239 GEGLREIHSDIFSPMD  254 (318)
T ss_dssp             CCSCEEEECCCSSCCC
T ss_pred             CCceEEEeCCCCCCcE
Confidence            8877766554333333

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.52  E-value=5.2e-06  Score=86.56  Aligned_cols=197  Identities=16%  Similarity=0.117  Sum_probs=112.2

Q ss_pred             cCCc-CeEEEEEe-cCCCEEEEEeC-CC----cEEEEeCCCC-ceEE-EeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        150 GDTR-PISYCSFS-PDSQHVATASW-SG----LCKLWTVPEC-ELVQ-TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       150 gh~~-~V~~~~~s-~~~~~l~tg~~-dg----~i~iwd~~~~-~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      +|.- .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+..   ....+.|+|++.     .|+....+
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~-----~l~y~~~d  241 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHT-----SLFYVTKD  241 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTT-----EEEEEEEC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCC-----EEEEEEEC
Confidence            4443 68889999 99999886543 33    4999999988 6321 1111   124688999997     45555544


Q ss_pred             -----CcEEEEeCCCCcce--eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCC
Q psy11350        221 -----GSVKLWSLDKDTPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       221 -----g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                           ..|.++++.+++..  ..+....                                      ......+.|+|||+
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~--------------------------------------~~~~~~~~~SpDg~  283 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHN--------------------------------------PLFSAFMYKAADTN  283 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCC--------------------------------------TTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCC--------------------------------------CceEEEEEECCCCC
Confidence                 25677777665321  1111111                                      11244567777777


Q ss_pred             EEEEEec---CCeEEEEECCCC--cE--EEEeeCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCeeEEE-ec
Q psy11350        294 FLGTCCW---DHSWRLWDLNQG--QE--VLHQEGHGKPVYCMSFQGDGSVVATGGLD----AFGRVWDLRTGRCIMF-LE  361 (471)
Q Consensus       294 ~l~~~~~---dg~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~d~~~l~t~~~d----g~i~iwd~~~~~~~~~-~~  361 (471)
                      +|+..+.   ...|.++|+.++  +.  ............++.|+.++.+++....+    ..|..+|+.++..... +.
T Consensus       284 ~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li  363 (751)
T 2xe4_A          284 TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV  363 (751)
T ss_dssp             EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE
T ss_pred             EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE
Confidence            7665542   346888998875  22  22233344566666665544455554443    3677788765322122 22


Q ss_pred             ccCc--CEEEEEEcCCCCEEEEEeCCCc--EEEEEC
Q psy11350        362 GHLK--SVFSVDFSPDGYHLATGSEDNA--VKIWDL  393 (471)
Q Consensus       362 ~h~~--~v~~~~~sp~~~~l~s~s~dg~--i~iwd~  393 (471)
                      .|..  .+..+.+. .+.++++...+|.  |.++|+
T Consensus       364 ~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          364 DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            3333  45566665 3345566777776  455565

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.48  E-value=6.1e-05  Score=75.81  Aligned_cols=194  Identities=8%  Similarity=0.015  Sum_probs=113.1

Q ss_pred             CCEEEEEeC-CCcEEEEeC-CCCceEEEeecCCCC-----------EEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        164 SQHVATASW-SGLCKLWTV-PECELVQTFRGHDCN-----------VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       164 ~~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      +..|++++. ++.|.-+|. .+|+.+..+......           ...+++.|.+.. ....++.++.|+.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~-~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGK-TPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSS-SCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCc-ceeEEEEEcCCCEEEEEECCC
Confidence            456777777 899999999 899999887643210           123445333320 001378888999999999999


Q ss_pred             CcceeeecCCCC---cceE-EEEECCCCCEEEEEeC------CCe------------EEecccccccc------------
Q psy11350        231 DTPLANLEGHEP---FRVS-RIKFHPSGRFLGTCCW------DHS------------WRLDTPLANLE------------  276 (471)
Q Consensus       231 ~~~~~~~~~~~~---~~v~-~~~~s~~~~~i~~~~~------d~~------------~~~~~~~~~~~------------  276 (471)
                      |+.+........   ..+. ...+ .++ .+++++.      ++.            |..........            
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            998876543220   0111 0011 122 3333321      232            32221110000            


Q ss_pred             -------------C----CCCcce-EEEEECCCCCEEEEEecC----------------CeEEEEECCCCcEEEEeeCCC
Q psy11350        277 -------------G----HEPFRV-SRIKFHPSGRFLGTCCWD----------------HSWRLWDLNQGQEVLHQEGHG  322 (471)
Q Consensus       277 -------------~----~~~~~v-~~l~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~  322 (471)
                                   +    .....+ ..+++.+....++.++.+                +.|..+|..+++.+..++...
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                         0    000001 135566777777777655                489999999999887765321


Q ss_pred             ----------CCeEEEEEe-CCC---CEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        323 ----------KPVYCMSFQ-GDG---SVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       323 ----------~~v~~~~~s-~d~---~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                                .++. +... .+|   ..++.++.+|.++++|..+|+.+....
T Consensus       299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                      2222 2332 467   567788999999999999998876553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.47  E-value=0.00036  Score=66.78  Aligned_cols=218  Identities=10%  Similarity=-0.068  Sum_probs=135.0

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC----ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS-WSGLCKLWTVPEC----ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ..-..+..++|++.+..|+.+. ..+.|+.+++...    .....+.........|++.+.+.+    ++++-...+.|.
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~----lY~~d~~~~~I~  184 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVS  184 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE----EEEEETTTTEEE
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc----eEEEECCCCeEE
Confidence            3456788999999777766554 5678999988652    233333333456778888875542    455555667888


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec--CC
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DH  302 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg  302 (471)
                      +.+++.......+...                                       ......|++.|.+.+|+....  .+
T Consensus       185 ~~~~~g~~~~~l~~~~---------------------------------------~~~P~~iavdp~~g~ly~td~~~~~  225 (400)
T 3p5b_L          185 VADTKGVKRKTLFREN---------------------------------------GSKPRAIVVDPVHGFMYWTDWGTPA  225 (400)
T ss_dssp             EECTTTCSEEEEEECS---------------------------------------SCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             EEeCCCCceEEEEeCC---------------------------------------CCCcceEEEecccCeEEEEeCCCCC
Confidence            8887543222111111                                       113678888886666665543  36


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEec--ccCcCEEEEEEcCCCCEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l  379 (471)
                      .|...++............-...+.|++++++..|+.+. ..+.|..+|+........+.  .......++++. .+.++
T Consensus       226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~ly  304 (400)
T 3p5b_L          226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF  304 (400)
T ss_dssp             CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEE
T ss_pred             EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEE
Confidence            788888865433333333335678999998777666654 56789999986543322222  223456778774 44566


Q ss_pred             EEEeCCCcEEEEECCCccchheecccCCCccc
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIG  411 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  411 (471)
                      ++-...+.|..+|..+++.+..+......+..
T Consensus       305 wtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~  336 (400)
T 3p5b_L          305 WTDIINEAIFSANRLTGSDVNLLAENLLSPED  336 (400)
T ss_dssp             EEESSSCSEEEEESSSCCCCEEEECSCSCEEE
T ss_pred             EecCCCCeEEEEEcCCCCceEEEecCCCCCce
Confidence            66677788999998888887777644433333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.46  E-value=0.00012  Score=67.35  Aligned_cols=204  Identities=11%  Similarity=0.187  Sum_probs=130.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCC---CCCccEEEEEeC--CCcEEEEeCC--CCccee
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPS---EGAVCSLASCAQ--DGSVKLWSLD--KDTPLA  235 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~---~~~~~~l~s~~~--dg~i~iwd~~--~~~~~~  235 (471)
                      ...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|.-.   ......+++.-.  +++|.+|++.  ++ .+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence            4456666677889999999 8999988864  6778887777321   000002334434  5889999763  33 233


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEE--CCC-CC-EEEEEecCCeEEEEECC-
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKF--HPS-GR-FLGTCCWDHSWRLWDLN-  310 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~iwd~~-  310 (471)
                      .+.....                            +.    ......+..+++  +|. +. ++++...+|.+..|++. 
T Consensus       115 ~i~~~~~----------------------------pv----~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~  162 (355)
T 3amr_A          115 SMTDPDH----------------------------PI----ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA  162 (355)
T ss_dssp             ECSCTTS----------------------------CE----ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred             ecccccc----------------------------Cc----CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence            3311100                            00    000124566777  664 43 67888889999999883 


Q ss_pred             ------CCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC-----CCeeEEEec-cc-CcCEEEEEEc--CC
Q psy11350        311 ------QGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR-----TGRCIMFLE-GH-LKSVFSVDFS--PD  375 (471)
Q Consensus       311 ------~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~~~~s--p~  375 (471)
                            +.+.++++.. ...+..+...+....|+.+-.+.-|..++.+     +++.+..+. ++ ...+..|++.  ++
T Consensus       163 ~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~  241 (355)
T 3amr_A          163 DKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD  241 (355)
T ss_dssp             CTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG
T ss_pred             CCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC
Confidence                  3355666654 4578889999988899999998777777755     345565542 22 2468888884  45


Q ss_pred             CC-EEEEEe-CCCcEEEEECC-Cccchheec
Q psy11350        376 GY-HLATGS-EDNAVKIWDLR-KRRLLKWCT  403 (471)
Q Consensus       376 ~~-~l~s~s-~dg~i~iwd~~-~~~~~~~~~  403 (471)
                      ++ +|++++ .++++.+||.. +.+.+..|.
T Consensus       242 g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          242 GKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             GCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            55 555554 67899999997 666666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.40  E-value=0.00043  Score=64.89  Aligned_cols=204  Identities=9%  Similarity=-0.037  Sum_probs=126.8

Q ss_pred             CcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        152 TRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      -..+..++|++.+..|+... ..+.|..+++........+.........+++.+.+..    ++++-...+.|.+.+++.
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~----ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK----LYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe----EEEEcCCCCeEEEEcCCC
Confidence            34578999998777666554 5688999998766544444332344568889876553    455666678899999865


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCC--eEEe-c--c-ccccccCCCCcceEEEEECCCCCEEEEEe-cCCe
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH--SWRL-D--T-PLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS  303 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~--~~~~-~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~  303 (471)
                      ......+.. .......+++.|.+..++......  .+.. .  . ....+....-.....|+++|++..|+.+. ..+.
T Consensus       148 ~~~~~l~~~-~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          148 AHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             CSCEEEECT-TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEeC-CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence            433332322 223678999999777766665443  3322 1  1 11122222233578999999777666654 4578


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      |..+|+........+.........+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus       227 I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          227 IERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            9999987543333333334456678873 45556666667788888866776555554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.35  E-value=0.00043  Score=63.56  Aligned_cols=162  Identities=10%  Similarity=0.024  Sum_probs=95.5

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  264 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~  264 (471)
                      +.+..+... .....++|.+++.     ++++...++.|..||.... ....+..                         
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~-----lyv~d~~~~~I~~~d~~g~-~~~~~~~-------------------------   70 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGT-----IFVTNHEVGEIVSITPDGN-QQIHATV-------------------------   70 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSC-----EEEEETTTTEEEEECTTCC-EEEEEEC-------------------------
T ss_pred             eEeEeCCCC-CCcceEEECCCCC-----EEEEeCCCCeEEEECCCCc-eEEEEeC-------------------------
Confidence            444455432 4567899999876     5666657788888886542 2111110                         


Q ss_pred             eEEeccccccccCCCCcceEEEEECCCCCEEEEEecC--CeEEEEECCCCcEEEEee-CCCCCeEEEEEeCCCCEEEEEe
Q psy11350        265 SWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD--HSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQGDGSVVATGG  341 (471)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~~  341 (471)
                                     ...+..+++.++|+++++....  ..|..+|..+++...... ........++..+++..+++..
T Consensus        71 ---------------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~  135 (306)
T 2p4o_A           71 ---------------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS  135 (306)
T ss_dssp             ---------------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET
T ss_pred             ---------------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC
Confidence                           1247788888888855544332  247777777776433222 1223345566556555555555


Q ss_pred             CCCeEEEEeCCCCee-EEEec---------ccCcCEEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q psy11350        342 LDAFGRVWDLRTGRC-IMFLE---------GHLKSVFSVDFSPDGYHLAT-GSEDNAVKIWDLRK  395 (471)
Q Consensus       342 ~dg~i~iwd~~~~~~-~~~~~---------~h~~~v~~~~~sp~~~~l~s-~s~dg~i~iwd~~~  395 (471)
                      .++.|+++|..+++. +....         ........+  +|++.+|+. -+..+.|..+++..
T Consensus       136 ~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          136 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            688999999876532 21111         111245566  788876654 45678899999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=3.5e-05  Score=80.33  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=91.3

Q ss_pred             CEEEEEEe-eCCCCCCccEEE-EEeCCC----cEEEEeCCCC-cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe
Q psy11350        196 NVGAIEFH-PLPSEGAVCSLA-SCAQDG----SVKLWSLDKD-TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  268 (471)
Q Consensus       196 ~v~~l~~~-~~~~~~~~~~l~-s~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~  268 (471)
                      .+....|+ |++.     +|+ +...+|    +|.++|+.++ +.+..   .    +                       
T Consensus       175 ~~~~~~~S~PDG~-----~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~----~-----------------------  219 (751)
T 2xe4_A          175 DVMEVKPAPPEHD-----LVAFSVDMSGNEVYTIEFKRISDPSQTIAD---K----V-----------------------  219 (751)
T ss_dssp             EEEEEEECTTTTC-----EEEEEEESSSSSCEEEEEEETTCTTCCCCC---C----E-----------------------
T ss_pred             EEeeeEecCCCCC-----EEEEEEeCCCCceEEEEEEECCCCCEeCCc---c----c-----------------------
Confidence            67889999 9998     444 333333    4999999887 53210   0    0                       


Q ss_pred             ccccccccCCCCcceEEEEECCCCCEEEEEecC-----CeEEEEECCCCcE--EEEee-CCCCCeEEEEEeCCCCEEEEE
Q psy11350        269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----HSWRLWDLNQGQE--VLHQE-GHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       269 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~s~d~~~l~t~  340 (471)
                                 ......+.|+|||+.|+....+     ..|+++++.+++.  ...+. ........+.|+|||++|+..
T Consensus       220 -----------~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~  288 (751)
T 2xe4_A          220 -----------SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIG  288 (751)
T ss_dssp             -----------EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEE
T ss_pred             -----------cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEE
Confidence                       0012245566666655555443     3588888877642  22222 233446788999999988866


Q ss_pred             eC---CCeEEEEeCCCC--ee--EEEecccCcCEEEEEEcCCCCEEEEEeCC----CcEEEEECCC
Q psy11350        341 GL---DAFGRVWDLRTG--RC--IMFLEGHLKSVFSVDFSPDGYHLATGSED----NAVKIWDLRK  395 (471)
Q Consensus       341 ~~---dg~i~iwd~~~~--~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~d----g~i~iwd~~~  395 (471)
                      +.   ...|+++|+.++  ..  ............++.|+.++.+++....+    ..|..+|+.+
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          289 SQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             ecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            53   346889999875  23  22233344556666665444444444443    2567777765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.0012  Score=63.03  Aligned_cols=189  Identities=8%  Similarity=-0.091  Sum_probs=118.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc---eeeecCCC
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP---LANLEGHE  241 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~  241 (471)
                      .+|+.+. ...|+..++........+. ....+.+|+|++....    ++.+-...+.|..+++.....   ...+..  
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~----lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--  155 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVIS--  155 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTE----EEEEETTTTEEEEEEC------CCCEEEEC--
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCc----eEEEecCCCeEEEEEcccCCCCCcceEEEe--
Confidence            3555554 5789999987765554443 3466789999987652    444545567888888754210   011100  


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeC
Q psy11350        242 PFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       242 ~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  320 (471)
                                                          ........+++.+.+. ++++-...+.|.+.++........+..
T Consensus       156 ------------------------------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~  199 (400)
T 3p5b_L          156 ------------------------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE  199 (400)
T ss_dssp             ------------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC
T ss_pred             ------------------------------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC
Confidence                                                0012467888887444 444445578899999876554444443


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCcc
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGL--DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG-SEDNAVKIWDLRKRR  397 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~  397 (471)
                      .......|++.|.+..|+....  .+.|...++........+...-.....|+++|++..|+.+ +..+.|..+|++...
T Consensus       200 ~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          200 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            4455789999996666655542  3789999886544333333344678999999877766655 456789999987543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.00016  Score=69.90  Aligned_cols=230  Identities=12%  Similarity=0.066  Sum_probs=132.1

Q ss_pred             CeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-CC----cEEEEe
Q psy11350        154 PISYCSFSP-DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-DG----SVKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-dg----~i~iwd  227 (471)
                      ....++++| ++..|+++...+.|+.+|+.++...... ........|+|++++.     .|+.+.. ++    .+.+.+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~-----~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEAD-----SMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSS-----EEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCC-----EEEEEeCCCCcccceEEEEe
Confidence            457889998 4666776665588999998776544433 3455678999999987     4555543 22    233334


Q ss_pred             CCCCcce--eeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEeccc---cc-cc-cCCCCcceEEEEECCCCCEEEEE-
Q psy11350        228 LDKDTPL--ANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTP---LA-NL-EGHEPFRVSRIKFHPSGRFLGTC-  298 (471)
Q Consensus       228 ~~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~---~~-~~-~~~~~~~v~~l~~~~~~~~l~~~-  298 (471)
                      . .+...  ..+..  ......++++| +|..+++-...+.+....+   .. .+ ..........++|+|++++|+.+ 
T Consensus       212 ~-~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          212 R-ESGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             G-GGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             C-CCceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            2 33222  12221  12467788999 5555555444454333211   11 11 11112246789999999965555 


Q ss_pred             ecCCeEEEEECCC--CcE--EEEeeCC---------------CCCeE-EEEEe--------CCCCEEEEEeCCCeEEEEe
Q psy11350        299 CWDHSWRLWDLNQ--GQE--VLHQEGH---------------GKPVY-CMSFQ--------GDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       299 ~~dg~i~iwd~~~--~~~--~~~~~~~---------------~~~v~-~~~~s--------~d~~~l~t~~~dg~i~iwd  350 (471)
                      ...+.|..++...  +..  +..+.+.               -.... .++..        ++|.++++-...+.|+.++
T Consensus       289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~  368 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT  368 (430)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence            4567899987653  221  1122111               01122 45553        3466666666678899998


Q ss_pred             CCCCeeEEEeccc------------------CcCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q psy11350        351 LRTGRCIMFLEGH------------------LKSVFSVDFSP-DGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       351 ~~~~~~~~~~~~h------------------~~~v~~~~~sp-~~~~l~s~s~dg~i~iwd~~  394 (471)
                       .+|... ++.+.                  -.....|+++| ++.++++-..++.|+.++++
T Consensus       369 -~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          369 -PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             456433 32221                  12588999999 46666666667778887754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.29  E-value=0.0024  Score=59.10  Aligned_cols=236  Identities=11%  Similarity=0.003  Sum_probs=132.2

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee----cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR----GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ...+.++.|.+++..+++| ..|.|. .....|+.-....    .....+.+|.|.+ +.      ++.++..+.|.. .
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~------~~~~g~~g~i~~-S  104 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE------GWIVGEPPIMLH-T  104 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE------EEEEEETTEEEE-E
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce------EEEEECCCeEEE-E
Confidence            4579999998877777754 477653 3334443222221    1244688999976 32      334455665543 3


Q ss_pred             CCCCcceeeecCC--CCcceEEEEECCCCCEEEEEeCCCeEEeccccc---cccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        228 LDKDTPLANLEGH--EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       228 ~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      .+.++.-......  .+..+..+.+.+++..++++...+.++....-.   .........+..+.+.|++.+++++...+
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~  184 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGS  184 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCc
Confidence            3334432322211  112467777777776666554333333322111   11111233688999999988887765444


Q ss_pred             eEEEEEC--CCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-c---cCcCEEEEEEcCCC
Q psy11350        303 SWRLWDL--NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-G---HLKSVFSVDFSPDG  376 (471)
Q Consensus       303 ~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~  376 (471)
                      .++-.|-  .+.+.+.  ......+..+.+.+++.++++ +.+|.+++++...++.-..+. +   +...+.++++.+++
T Consensus       185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~  261 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN  261 (327)
T ss_dssp             EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred             EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence            4444453  3333332  244567889999999876654 467888777433343322222 1   22458999999887


Q ss_pred             CEEEEEeCCCcEEEEECCCccchhee
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      ..++++ .+|.| ++..+.++.-..+
T Consensus       262 ~~~~~g-~~g~i-~~S~DgG~tW~~~  285 (327)
T 2xbg_A          262 EVWLAG-GAGAL-LCSQDGGQTWQQD  285 (327)
T ss_dssp             CEEEEE-STTCE-EEESSTTSSCEEC
T ss_pred             EEEEEe-CCCeE-EEeCCCCcccEEc
Confidence            776665 46776 4566666544433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.29  E-value=0.00013  Score=67.68  Aligned_cols=200  Identities=14%  Similarity=0.025  Sum_probs=121.2

Q ss_pred             EEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCC-------------------CCcceEEEEECC-CCCE
Q psy11350        197 VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH-------------------EPFRVSRIKFHP-SGRF  256 (471)
Q Consensus       197 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~v~~~~~s~-~~~~  256 (471)
                      ..+++|.+++.     +++++..++.|..|+..++... .+...                   ....+..+++.+ ++++
T Consensus        21 p~~i~~d~~g~-----~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l   94 (322)
T 2fp8_A           21 PNSFTFDSTNK-----GFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL   94 (322)
T ss_dssp             CCCEECCTTCS-----SEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred             ceEEEEcCCCC-----EEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence            45788888876     5788888899999998665432 22100                   012478899998 5554


Q ss_pred             EEEEeCCCeEEeccc---cccccC----CCCcceEEEEECC-CCCEEEEEec-----------------CCeEEEEECCC
Q psy11350        257 LGTCCWDHSWRLDTP---LANLEG----HEPFRVSRIKFHP-SGRFLGTCCW-----------------DHSWRLWDLNQ  311 (471)
Q Consensus       257 i~~~~~d~~~~~~~~---~~~~~~----~~~~~v~~l~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~  311 (471)
                      +++....+.+.+...   ...+..    ........+++.+ +|+..++-..                 ++.|..||..+
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            444333333333211   111111    1112467899999 8876665432                 36799999877


Q ss_pred             CcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCe--eEEEecccCcCEEEEEEcCCCCEEEEEeC----
Q psy11350        312 GQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGR--CIMFLEGHLKSVFSVDFSPDGYHLATGSE----  384 (471)
Q Consensus       312 ~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~----  384 (471)
                      ++....... ......++|+|+++.|+.+ ...+.|.+|++....  ....+....+ ...+++.++|+++++...    
T Consensus       175 ~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          175 KETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             TEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             CEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence            654322221 1234579999999866555 556899999987421  1111111223 788999999987776654    


Q ss_pred             ------CCcEEEEECCCccchheeccc
Q psy11350        385 ------DNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       385 ------dg~i~iwd~~~~~~~~~~~~~  405 (471)
                            .+.|..+|. .++.+..+...
T Consensus       253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~  278 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDE-FGNILEVIPLP  278 (322)
T ss_dssp             STTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred             cccCCCccEEEEECC-CCCEEEEEECC
Confidence                  466888886 46666655443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.27  E-value=0.00018  Score=63.68  Aligned_cols=168  Identities=9%  Similarity=0.070  Sum_probs=102.8

Q ss_pred             EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe
Q psy11350        189 TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  268 (471)
Q Consensus       189 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~  268 (471)
                      .+.+-...+..++|.|++..    ++++...++.|...|.. ++.+..+.....                          
T Consensus        21 ~l~g~~~~lSGla~~~~~~~----L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--------------------------   69 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNT----LFSTINKPAAIVEMTTN-GDLIRTIPLDFV--------------------------   69 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTE----EEEEEETTEEEEEEETT-CCEEEEEECSSC--------------------------
T ss_pred             ECCCcccCcceeEEeCCCCE----EEEEECCCCeEEEEeCC-CCEEEEEecCCC--------------------------
Confidence            34455578999999998653    55567778889999986 766665532211                          


Q ss_pred             ccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcE---EEEee------CCCCCeEEEEEeCCCCEEEE
Q psy11350        269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE---VLHQE------GHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       269 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~s~d~~~l~t  339 (471)
                                  ...-.|++.+++.++++.-.++.+.++++.....   +....      ........++|+|.++.|++
T Consensus        70 ------------~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v  137 (255)
T 3qqz_A           70 ------------KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF  137 (255)
T ss_dssp             ------------SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE
T ss_pred             ------------CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE
Confidence                        1356677777776555555566777777654432   11111      23445789999998876666


Q ss_pred             EeCCCeEEEEeCC---CCeeEEEec-------ccCcCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccchh
Q psy11350        340 GGLDAFGRVWDLR---TGRCIMFLE-------GHLKSVFSVDFSPDG-YHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       340 ~~~dg~i~iwd~~---~~~~~~~~~-------~h~~~v~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      +.......||.+.   ....+..+.       .+...+.+++++|.. ++++.......|.++|.. ++.+.
T Consensus       138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~  208 (255)
T 3qqz_A          138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG  208 (255)
T ss_dssp             EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE
T ss_pred             EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE
Confidence            6654444444443   111122221       133467899999964 455555566778888865 55544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.27  E-value=0.0012  Score=61.19  Aligned_cols=228  Identities=10%  Similarity=0.025  Sum_probs=129.2

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee---cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR---GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      ...+.++.|++ +..++ ++..|.|.. ....|+.-....   .+...+..|.+.+++.     +++ ++.+|.|.. ..
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-----~~~-~~~~g~v~~-S~  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-----AEM-ITNVGAIYR-TK  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-----EEE-EETTCCEEE-ES
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC-----EEE-EeCCccEEE-Ec
Confidence            44688899986 44444 444665544 333344333222   2335577888877664     344 445665432 22


Q ss_pred             CCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        229 DKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       229 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                      +.++.-..........+..+.+.+++.+++++.....+.....    -..+.......+..+.+.+++..+ .++.+|.+
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~  227 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKI  227 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEE
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceE
Confidence            3344333333222336889999999988877654443333211    011111123468899999988755 45567888


Q ss_pred             EEEECCCCcEEEEee-C---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec---ccCcCEEEEEEcCCCC
Q psy11350        305 RLWDLNQGQEVLHQE-G---HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE---GHLKSVFSVDFSPDGY  377 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~-~---~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~  377 (471)
                      ++.+...++.-..+. +   +...+.++.+.+++.+++++. +|.| .+..+.|+.-..+.   .+...+.++.|.+++ 
T Consensus       228 ~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-  304 (327)
T 2xbg_A          228 AFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-  304 (327)
T ss_dssp             EEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-
T ss_pred             EEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-
Confidence            777533233222222 1   234588999998887776654 6766 34445554444343   223567889887554 


Q ss_pred             EEEEEeCCCcEEEEEC
Q psy11350        378 HLATGSEDNAVKIWDL  393 (471)
Q Consensus       378 ~l~s~s~dg~i~iwd~  393 (471)
                      .+++++.+|.|.-++-
T Consensus       305 ~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          305 QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEEECSTTEEEEECC
T ss_pred             ceEEEcCCceEEEEcC
Confidence            4666678898776653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.27  E-value=0.00038  Score=66.23  Aligned_cols=215  Identities=9%  Similarity=-0.032  Sum_probs=131.0

Q ss_pred             CcCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        152 TRPISYCSFSPDSQHVATA-SWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ...+..++|++.+..|+.. ...+.|..+++........+.........+++.+.+..    ++++-...+.|.+.+++.
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~----lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK----LYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE----EEEEETTTTEEEECBTTS
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe----EEEEcCCCCeEEEEeCCC
Confidence            3457889999876666654 45688999998766544444333334567888876553    455556678898888864


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCC--eEE-ec--c-ccccccCCCCcceEEEEECCCCCEEEEEe-cCCe
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH--SWR-LD--T-PLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS  303 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~--~~~-~~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~  303 (471)
                      ......+.. .......+++.|.+..++......  .+. +.  . ....+....-.....|+|+|++..|+.+. ..+.
T Consensus       191 ~~~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          191 AHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             CSCEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence            433333322 223678999999887776665443  322 21  1 11122112123478999998777666654 4578


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      |..+|+........+.........+++. .+.++++....+.|..++..+|+.+..+.........|++
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            9999987543333333334456778883 4556666667788888887777666655433333344433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.25  E-value=0.00011  Score=73.88  Aligned_cols=217  Identities=13%  Similarity=0.079  Sum_probs=120.5

Q ss_pred             EEEEecCCCEEEEEeC--------------------C----CcEEEEeCCCCceEEEeec--CC--------CCEEEEEE
Q psy11350        157 YCSFSPDSQHVATASW--------------------S----GLCKLWTVPECELVQTFRG--HD--------CNVGAIEF  202 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~--------------------d----g~i~iwd~~~~~~~~~~~~--h~--------~~v~~l~~  202 (471)
                      .+++.|+..+|+.++.                    |    +.|.-+|..+|+.+..++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677888888887763                    2    5899999999999988763  32        1221 121


Q ss_pred             e-eCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc-ceE----------------------------------
Q psy11350        203 H-PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF-RVS----------------------------------  246 (471)
Q Consensus       203 ~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~----------------------------------  246 (471)
                      . .++.  ...+++.++.+|.+.++|..+|+.+..+...... ...                                  
T Consensus       329 ~~~~G~--~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P  406 (582)
T 1flg_A          329 KAKDGK--IVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP  406 (582)
T ss_dssp             ECSSSC--EEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred             ecCCCC--EEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence            1 2332  0115788999999999999999988765543210 011                                  


Q ss_pred             ---------EEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Q psy11350        247 ---------RIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       247 ---------~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                               .++++|+...+++...+..+.+..............-..+...|.+     ...+|.|..||+.+++.+..
T Consensus       407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~-----~~~~G~l~A~D~~tG~~~W~  481 (582)
T 1flg_A          407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY-----DDHVGSLRAMDPVSGKVVWE  481 (582)
T ss_dssp             CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC-----SSCSEEEEEECTTTCCEEEE
T ss_pred             CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC-----CCCcceEEEEECCCCCEEEE
Confidence                     2233343333333332222111110000000000000001111110     12368899999999998766


Q ss_pred             eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCE-EEEEEcCCCC-EEEEE
Q psy11350        318 QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV-FSVDFSPDGY-HLATG  382 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~~~~sp~~~-~l~s~  382 (471)
                      ..... ++..-.....+.+++.|+.|+.++.||.++|+.+..+....+.. .-+.|..+|+ |+++.
T Consensus       482 ~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          482 HKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            64322 22221222246688889999999999999999998887543221 1255656776 44433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.23  E-value=0.0014  Score=68.10  Aligned_cols=211  Identities=10%  Similarity=-0.075  Sum_probs=128.2

Q ss_pred             CCcCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC----ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATA-SWSGLCKLWTVPEC----ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg-~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ....+.+++|++....|+.+ ...+.|+.+++...    .....+.........|++.+.+.+    ++++-...+.|.+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~----LY~tD~~~~~I~v  497 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVSV  497 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc----EEEEecCCCeEEE
Confidence            34567789999866666544 45578888888642    223333323345567888877653    5556666788888


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec--CCe
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHS  303 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~  303 (471)
                      .++.... ...+....                                      ......|++.|.+.+|+.+..  .+.
T Consensus       498 ~~ldG~~-~~~l~~~~--------------------------------------l~~P~gIaVDp~~g~LYwtD~g~~~~  538 (791)
T 3m0c_C          498 ADTKGVK-RKTLFREN--------------------------------------GSKPRAIVVDPVHGFMYWTDWGTPAK  538 (791)
T ss_dssp             EETTSSS-EEEEEECT--------------------------------------TCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             EeCCCCe-EEEEEeCC--------------------------------------CCCcceEEEecCCCCEEEecCCCCCe
Confidence            8875332 22211100                                      123678888887666665553  267


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEecc--cCcCEEEEEEcCCCCEEE
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEG--HLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~  380 (471)
                      |.+.++........+...-.....|++++.+..|+.+. ..+.|..+++........+..  .-....+|++.. +++++
T Consensus       539 I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYw  617 (791)
T 3m0c_C          539 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFW  617 (791)
T ss_dssp             EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEE
T ss_pred             EEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEE
Confidence            88888865443333333345678999998666666554 556899999865443333332  223466777743 34555


Q ss_pred             EEeCCCcEEEEECCCccchheeccc
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +-...+.|...|..+++.+..+...
T Consensus       618 tD~~~~~I~~~dk~tG~~~~~l~~~  642 (791)
T 3m0c_C          618 TDIINEAIFSANRLTGSDVNLLAEN  642 (791)
T ss_dssp             EETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EECCCCEEEEEeCCCCcceEEeecC
Confidence            5556688888898888777666443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.21  E-value=0.0008  Score=65.01  Aligned_cols=231  Identities=13%  Similarity=0.043  Sum_probs=134.0

Q ss_pred             CeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---Cc-EEEEe
Q psy11350        154 PISYCSFSPD--SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---GS-VKLWS  227 (471)
Q Consensus       154 ~V~~~~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~-i~iwd  227 (471)
                      ....++|+|+  +..|+.+...+.|+.+++.++...... ........|+|++++.     ++++....   .. +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-----lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-----MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-----EEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-----EEEEcCCCCcccceEEEEE
Confidence            4568899994  455666654589999998877665543 3445688999999987     44444321   11 33333


Q ss_pred             CCCCcce-eeecCCCCcceEEEEECC-CCCEEEEEeCCCeEEecccc-c----cc-cCCCCcceEEEEECCCCCEEEEEe
Q psy11350        228 LDKDTPL-ANLEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLDTPL-A----NL-EGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       228 ~~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~i~~~~~d~~~~~~~~~-~----~~-~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      ...+... ..+.  .......++++| +|.++++-..++.+....+. .    .+ ..........++|+|++++|+++.
T Consensus       214 ~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          214 RASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            2211110 1111  112456788999 55555454445543332211 1    11 111111234699999999666554


Q ss_pred             -cCCeEEEEECCC--CcE--EEEeeCC---------------CCCeEEEEE---------eCCCCEEEEEeCCCeEEEEe
Q psy11350        300 -WDHSWRLWDLNQ--GQE--VLHQEGH---------------GKPVYCMSF---------QGDGSVVATGGLDAFGRVWD  350 (471)
Q Consensus       300 -~dg~i~iwd~~~--~~~--~~~~~~~---------------~~~v~~~~~---------s~d~~~l~t~~~dg~i~iwd  350 (471)
                       ..+.|+.+++..  +..  ...+.+.               -.....+++         .++|.++++-...+.|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence             567899988652  321  1122111               123567899         67777777777788999998


Q ss_pred             CCCCeeEEEeccc------------------CcCEEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q psy11350        351 LRTGRCIMFLEGH------------------LKSVFSVDFS-PDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       351 ~~~~~~~~~~~~h------------------~~~v~~~~~s-p~~~~l~s~s~dg~i~iwd~~  394 (471)
                      . +|... ++.+.                  -.....|+++ ++|.++++=..++.|+.++++
T Consensus       372 ~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          372 P-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             T-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             C-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            5 56433 33221                  1247889999 566666666667788887764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.06  E-value=0.0055  Score=55.85  Aligned_cols=211  Identities=10%  Similarity=0.080  Sum_probs=118.1

Q ss_pred             CcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeecC-----C--CCEEEEEE---eeCCCCCCccEEEEEe--
Q psy11350        152 TRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGH-----D--CNVGAIEF---HPLPSEGAVCSLASCA--  218 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h-----~--~~v~~l~~---~~~~~~~~~~~l~s~~--  218 (471)
                      ..--.+++|.+....|..++ ..|+|..|+...+......-..     .  ..+..|.|   .|.+.     ++++..  
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-----L~vv~~~~   86 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-----LFAVMKNA   86 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-----EEEEEEET
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-----EEEEEccc
Confidence            33445778988766666666 7899999998766444332221     1  13578999   57754     444333  


Q ss_pred             -----------CCCcEEEEeCC---CCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceE
Q psy11350        219 -----------QDGSVKLWSLD---KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVS  284 (471)
Q Consensus       219 -----------~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~  284 (471)
                                 .+..|..+|+.   +++.+.........                          .......+.......
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~--------------------------~~~~~~~g~~~~~~n  140 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ--------------------------DEFEKKAGKRPFGVV  140 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH--------------------------HHHHHHHSSCCEEEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc--------------------------ccccccccccccCCc
Confidence                       25778889988   67655443311000                          000000010112355


Q ss_pred             EEEECCCCCEEEEEecC-CeEEEEECCCCcEEEEe------eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee-
Q psy11350        285 RIKFHPSGRFLGTCCWD-HSWRLWDLNQGQEVLHQ------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC-  356 (471)
Q Consensus       285 ~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~-  356 (471)
                      .++..++|+..++++.. +.|..++.... .+..+      .......+.|+++|+|.+|++....|.+..+|+.+... 
T Consensus       141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~  219 (334)
T 2p9w_A          141 QSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW  219 (334)
T ss_dssp             EEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC
T ss_pred             eeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce
Confidence            66666666666666665 66555555432 12111      11223467899999999888887799999999885432 


Q ss_pred             -EEEec--cc---CcCEEEE-EEcCCCCE-EEEEeCCCcEEEEECCC
Q psy11350        357 -IMFLE--GH---LKSVFSV-DFSPDGYH-LATGSEDNAVKIWDLRK  395 (471)
Q Consensus       357 -~~~~~--~h---~~~v~~~-~~sp~~~~-l~s~s~dg~i~iwd~~~  395 (471)
                       +. +.  +.   -.....| ..-.+|+. |++.+..+.+.+.+-+.
T Consensus       220 ~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          220 PEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             CEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             eec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence             21 11  21   1223443 22236777 55555666666665543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.05  E-value=2.8e-05  Score=80.03  Aligned_cols=209  Identities=10%  Similarity=-0.059  Sum_probs=117.9

Q ss_pred             cCeEEEEEecCCCEEEEEe-CCCcEEEEeCCC----CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        153 RPISYCSFSPDSQHVATAS-WSGLCKLWTVPE----CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+..++|++.+..|+.+. ..+.|+.+++.+    ......+.........|++.+.+..    ++++-...+.|.+++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~----LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSB----CEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCc----EEEEeccCCeEEEEe
Confidence            4566789998877776654 457899999875    2222222111122345677654442    344445567788888


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec--CCeEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWR  305 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~  305 (471)
                      +........+...                                       ......|+++|.+.+|+.+..  .+.|.
T Consensus       482 ~dg~~~~~l~~~~---------------------------------------~~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          482 TKGVKRKTLFREQ---------------------------------------GSKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             SSSCCEEEECCCS---------------------------------------SCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             cCCCceEEEEeCC---------------------------------------CCCcceEEEccCCCcEEEcccCCCCeEE
Confidence            7543221111110                                       112456677776555544432  26777


Q ss_pred             EEECCCCcEEEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCeeEEEec--ccCcCEEEEEEcCCCCEEEEE
Q psy11350        306 LWDLNQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       306 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      ++++............-...+.|+|+|++. ++++-+..+.|.++++........+.  .......+|++..+ .++++.
T Consensus       523 ~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          523 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             BCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEEC
T ss_pred             EEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEe
Confidence            777653322111122223456899998755 44555567789999986443322222  12234556666544 455566


Q ss_pred             eCCCcEEEEECCCccchheeccc
Q psy11350        383 SEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       383 s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      ...+.|..++..+++.+..+...
T Consensus       602 ~~~~~V~~~d~~~G~~~~~i~~~  624 (699)
T 1n7d_A          602 IINEAIFSANRLTGSDVNLLAEN  624 (699)
T ss_dssp             STTTCEEEEETTTEEEEECCCTT
T ss_pred             CCCCeEEEEEccCCCceEEeecC
Confidence            67789999999888887777543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.04  E-value=0.0024  Score=58.85  Aligned_cols=204  Identities=10%  Similarity=-0.050  Sum_probs=123.8

Q ss_pred             cCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCce-EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATA-SWSGLCKLWTVPECEL-VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg-~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ..+.+++|++.+..|+.. ...+.|..+++..+.. ...+...-.....+++.+.+..    ++++-...+.|.+++++.
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~----ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK----LYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE----EEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe----EEEEECCCCEEEEEECCC
Confidence            356788999876666544 4568899999876532 1222222234567888875553    455556678999999864


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeC--CCeEEe-c---cccccccCCCCcceEEEEECCCCCEEEEEe-cCCe
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRL-D---TPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHS  303 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~--d~~~~~-~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~  303 (471)
                      ... ..+..........+++.|.+.+++....  .+.+.. .   .....+....-.....|+++|++..|+.+. ..+.
T Consensus       111 ~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          111 SLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             CSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence            433 3332222236789999998777666653  233322 1   111122111123468999999777666664 4678


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      |..+|+..........+.......+++.. +.++.+-...+.|..++..+|+....+..
T Consensus       190 I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          190 IHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            99999875433222333344556777763 34555655678899999888876555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.0057  Score=59.47  Aligned_cols=238  Identities=11%  Similarity=0.059  Sum_probs=136.8

Q ss_pred             CeEEEEEec-CCCEEEEEe-CCCcEEEEeCCCCceEEEeecC---CCCEEEEEE-------eeCCCCCCccEEEEEeCCC
Q psy11350        154 PISYCSFSP-DSQHVATAS-WSGLCKLWTVPECELVQTFRGH---DCNVGAIEF-------HPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       154 ~V~~~~~s~-~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~~~~~~l~s~~~dg  221 (471)
                      ....|+|+| ++..|+.+. ..+.|++.|+.++.....+...   ......|+|       ++++.     .|+.+...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-----~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-----YMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-----EEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC-----EEEEEeCCC
Confidence            467889998 455555554 3467999998876665544332   235789999       99887     455555443


Q ss_pred             -------cEEEEeCCC-Ccce-----eeecCCCCcceEEEEECCCCCEEEE-EeCCCeEEecccc--------cc-----
Q psy11350        222 -------SVKLWSLDK-DTPL-----ANLEGHEPFRVSRIKFHPSGRFLGT-CCWDHSWRLDTPL--------AN-----  274 (471)
Q Consensus       222 -------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~~~~s~~~~~i~~-~~~d~~~~~~~~~--------~~-----  274 (471)
                             .|.+.+... +...     ..+..  ......++++|++.+|++ -...+.+......        ..     
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CCcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                   255665333 2221     12221  114567889996655554 4455543221111        11     


Q ss_pred             -----------ccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECC--CCcE--EEEeeCC---C------------C
Q psy11350        275 -----------LEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLN--QGQE--VLHQEGH---G------------K  323 (471)
Q Consensus       275 -----------~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~~---~------------~  323 (471)
                                 +..........|+|+|+|++|+.+ +..+.|+.++..  .+..  ...+-+.   .            .
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                       111112346789999999965555 456789886653  3321  0122111   1            1


Q ss_pred             CeE-EEEEe-------CCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc------------------------CcCEEEEE
Q psy11350        324 PVY-CMSFQ-------GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH------------------------LKSVFSVD  371 (471)
Q Consensus       324 ~v~-~~~~s-------~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~~~  371 (471)
                      ... .++..       ++|.++++-...++|+.++ .+|. +.++-+.                        -.....|+
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            233 44554       4667777777788999998 4563 3344321                        12477899


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEECCCccchh
Q psy11350        372 FSPD-GYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       372 ~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      ++++ |.++++=+.+..|+.+++....++.
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            9986 7666666677889999988766554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.02  E-value=0.0014  Score=63.24  Aligned_cols=192  Identities=11%  Similarity=0.069  Sum_probs=115.7

Q ss_pred             CEEEEEEeeC--CCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-----CeEEe
Q psy11350        196 NVGAIEFHPL--PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----HSWRL  268 (471)
Q Consensus       196 ~v~~l~~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-----~~~~~  268 (471)
                      ....|+|.|+  ..     .|+.+...+.|+.+|+.++.......  .......++++++|+++++....     +.+.+
T Consensus       140 ~P~gvavd~~s~~g-----~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          140 NIWRMMFDPNSNYD-----DLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCCEEEECTTTTTC-----EEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred             CCceEEEccccCCC-----EEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence            3458899984  33     35555554889999987765544333  22368999999999944443321     12222


Q ss_pred             cccccccc-----CCCCcceEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEe-e-CCCCCeEEEEEeCCCCEEE-E
Q psy11350        269 DTPLANLE-----GHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEVLHQ-E-GHGKPVYCMSFQGDGSVVA-T  339 (471)
Q Consensus       269 ~~~~~~~~-----~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~s~d~~~l~-t  339 (471)
                      ... ..+.     .. ......++++| ++.++++-..++.|+.+|..++.....+ . +....-..++|+|+++.|+ +
T Consensus       213 ~~~-~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          213 TRA-SGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             CGG-GTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             ECC-CCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            111 0010     01 12356788999 6665555556788999999877652222 1 1122234799999998554 4


Q ss_pred             EeCCCeEEEEeCC--CCee--EEEeccc---------------CcCEEEEEE---------cCCCCEEEEEeCCCcEEEE
Q psy11350        340 GGLDAFGRVWDLR--TGRC--IMFLEGH---------------LKSVFSVDF---------SPDGYHLATGSEDNAVKIW  391 (471)
Q Consensus       340 ~~~dg~i~iwd~~--~~~~--~~~~~~h---------------~~~v~~~~~---------sp~~~~l~s~s~dg~i~iw  391 (471)
                      -...+.|+.++..  ++..  ...+.+.               -.....+++         .++|.++++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence            4567889998865  3321  1122111               124678999         6777777777777889888


Q ss_pred             ECCCcc
Q psy11350        392 DLRKRR  397 (471)
Q Consensus       392 d~~~~~  397 (471)
                      +. .+.
T Consensus       371 ~~-~G~  375 (433)
T 4hw6_A          371 TP-EGR  375 (433)
T ss_dssp             CT-TSE
T ss_pred             CC-CCC
Confidence            84 453

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.00  E-value=0.0037  Score=58.52  Aligned_cols=220  Identities=17%  Similarity=0.144  Sum_probs=118.5

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE--EEee---cCCCCEEEEEEeeC---CCCCCccEEEEEeCC----
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELV--QTFR---GHDCNVGAIEFHPL---PSEGAVCSLASCAQD----  220 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~---~h~~~v~~l~~~~~---~~~~~~~~l~s~~~d----  220 (471)
                      .....++|.|+|+++++ ...|.|.+++  +++..  ..+.   ........|+|+|+   +..    ++++-...    
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~----lYv~~~~~~~~~  103 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPY----VYAYRTVAEGGL  103 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE----EEEEEEECTTSS
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCE----EEEEEecCCCCC
Confidence            35678999999985554 5679999998  44322  2121   12356789999998   331    33333322    


Q ss_pred             -CcEEEEeCCCCc-----ce-eeecC--CCCcceEEEEECCCCCEEEEEeCC-------------Ce-EEeccccc----
Q psy11350        221 -GSVKLWSLDKDT-----PL-ANLEG--HEPFRVSRIKFHPSGRFLGTCCWD-------------HS-WRLDTPLA----  273 (471)
Q Consensus       221 -g~i~iwd~~~~~-----~~-~~~~~--~~~~~v~~~~~s~~~~~i~~~~~d-------------~~-~~~~~~~~----  273 (471)
                       +.|..|+...+.     .+ ..+..  ........++|.|+|.++++.+..             +. +++...-.    
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence             567788876431     11 11331  111134689999999766664322             22 33321110    


Q ss_pred             -----------cccCCCCcceEEEEECC-CCCEEEEEecCCe--------EEEEECCCCc------------------EE
Q psy11350        274 -----------NLEGHEPFRVSRIKFHP-SGRFLGTCCWDHS--------WRLWDLNQGQ------------------EV  315 (471)
Q Consensus       274 -----------~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~--------i~iwd~~~~~------------------~~  315 (471)
                                 .+....-.....++|+| ++.++++-...+.        |.+.  ..+.                  ++
T Consensus       184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCe
Confidence                       00000001356789999 5554444332222        3332  2221                  22


Q ss_pred             EEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee------EEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        316 LHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC------IMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       316 ~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      ..+ .+......++| .+|.++++.-..+.|...++.....      ...+..-...+..+++.|||.++++..
T Consensus       262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            222 22334567777 4677777666677788777654321      122222236789999999998776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.98  E-value=0.00014  Score=74.50  Aligned_cols=224  Identities=9%  Similarity=-0.085  Sum_probs=124.7

Q ss_pred             CeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceEEEeecCCCC-EEEEEEeeCCCCCCccEEEEEe-CC-----CcEEE
Q psy11350        154 PISYCSFSPDSQHVATASW-SGLCKLWTVPECELVQTFRGHDCN-VGAIEFHPLPSEGAVCSLASCA-QD-----GSVKL  225 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~l~s~~-~d-----g~i~i  225 (471)
                      ...++++.++++++++|+. ++.+.+||..+.+-...-..+... -.+++..+++.     +++.|+ .+     ..+.+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-----iyv~GG~~~~~~~~~~~e~  318 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-----VFTIGGSWSGGVFEKNGEV  318 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-----EEEECCCCCSSSCCCCEEE
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe-----EEEEeCcccCCcccccceE
Confidence            3445677899999999984 458999998876544322212111 12455566776     677777 34     56999


Q ss_pred             EeCCCCcceeee-----cCCCCcceEEEEECCCCCEEEEEeCCCeEEe---------cccc--------ccccC-----C
Q psy11350        226 WSLDKDTPLANL-----EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---------DTPL--------ANLEG-----H  278 (471)
Q Consensus       226 wd~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---------~~~~--------~~~~~-----~  278 (471)
                      ||..+++....-     .....  -....+..++..++.++.++....         ..+.        .....     .
T Consensus       319 yd~~t~~W~~~~~~~~~p~~~~--~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  396 (656)
T 1k3i_A          319 YSPSSKTWTSLPNAKVNPMLTA--DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP  396 (656)
T ss_dssp             EETTTTEEEEETTSCSGGGCCC--CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred             eCCCCCcceeCCCccccccccc--cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence            999876533210     00000  000123345666666665544211         1100        00000     0


Q ss_pred             CCcceEEEEECC-CCCEEEEEecCC-----------eEEEEECCCCcEEEEe--eCCCC-CeEEEEEeCCCCEEEEEeCC
Q psy11350        279 EPFRVSRIKFHP-SGRFLGTCCWDH-----------SWRLWDLNQGQEVLHQ--EGHGK-PVYCMSFQGDGSVVATGGLD  343 (471)
Q Consensus       279 ~~~~v~~l~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~-~v~~~~~s~d~~~l~t~~~d  343 (471)
                      ....-.++.|.. +++.+++|+.++           .|.+||..+.+-....  ..+.. .-.+++..|++++++.|+.+
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence            011123444443 677788887543           6888898876544332  11222 22455677899999999864


Q ss_pred             -----------CeEEEEeCCCCeeEE--EecccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        344 -----------AFGRVWDLRTGRCIM--FLEGHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       344 -----------g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                                 ..+.+||..+.+-..  .+........+..+.|+|++++.|+.
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                       468999988765322  11111222334556799999999985

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.98  E-value=0.0053  Score=57.49  Aligned_cols=225  Identities=16%  Similarity=0.088  Sum_probs=121.8

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eEEEee---cCCCCEEEEEEeeC---CCCCCccEEEEEeC---C--
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECE-LVQTFR---GHDCNVGAIEFHPL---PSEGAVCSLASCAQ---D--  220 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~~~~~~l~s~~~---d--  220 (471)
                      .....++|.|+|++++ +..+|.|++++ .+++ .+..+.   ........|+++|+   +..    ++++-+.   +  
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~----lyv~~~~~~~~~~  102 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSW----VYLYASYFAEGGH  102 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCE----EEEEEEEECGGGC
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCE----EEEEEeccCCCCC
Confidence            4567899999998554 55579999997 4554 222211   12356889999997   331    3333322   3  


Q ss_pred             --CcEEEEeCCCC--c-----ce-eeecCCCCcceEEEEECCCCCEEEEEeCC-------------Ce-EEeccccc---
Q psy11350        221 --GSVKLWSLDKD--T-----PL-ANLEGHEPFRVSRIKFHPSGRFLGTCCWD-------------HS-WRLDTPLA---  273 (471)
Q Consensus       221 --g~i~iwd~~~~--~-----~~-~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-------------~~-~~~~~~~~---  273 (471)
                        +.|..|+....  .     .+ ..+..........+.|.|||.++++.+..             +. +++...-.   
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence              56777776543  1     11 11221111134679999999877764432             12 33321100   


Q ss_pred             -------cccCCCCcceEEEEECC-CCCEEEEEecCC---eEEEEECCC--------C--------cEEEEeeCCCCCeE
Q psy11350        274 -------NLEGHEPFRVSRIKFHP-SGRFLGTCCWDH---SWRLWDLNQ--------G--------QEVLHQEGHGKPVY  326 (471)
Q Consensus       274 -------~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg---~i~iwd~~~--------~--------~~~~~~~~~~~~v~  326 (471)
                             .+....-.....++|+| ++.++++-...+   .|.+.....        +        .++..+........
T Consensus       183 ~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          183 DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence                   00000011356899999 555444432221   233332110        0        12222211234567


Q ss_pred             EEEEe-------CCCCEEEEEeCCCeEEEEeCCCC-eeE--EEe-cccCcCEEEEEEcCCCCEEEEEe
Q psy11350        327 CMSFQ-------GDGSVVATGGLDAFGRVWDLRTG-RCI--MFL-EGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       327 ~~~~s-------~d~~~l~t~~~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      .++|.       .+|.++++.-..+.|...++... +..  ..+ .+....+..+++.|||.++++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            88883       46777777777788888888753 222  222 23345789999999998766654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.96  E-value=0.0061  Score=63.26  Aligned_cols=188  Identities=8%  Similarity=-0.111  Sum_probs=114.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc----eeeecCCC
Q psy11350        166 HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP----LANLEGHE  241 (471)
Q Consensus       166 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~  241 (471)
                      +|+.+. ...|+..++........+.. ...+.+|+|.+....    ++++-...+.|+.+++.....    ...+..  
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~----lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--  468 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVISR--  468 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTE----EEEEETTTTEEEEEEC--------CEEEECS--
T ss_pred             cccccc-ccceeEeeccCCcceeeecC-CCceEEEeecccCCe----eEEeeccceeEEEEeccCCCCCcceeEEEec--
Confidence            343333 56677778766554444433 456778999886552    445555567788888754211    111100  


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEeeC
Q psy11350        242 PFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       242 ~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  320 (471)
                                                           .......|++.+.++.|+.+ ...+.|.+.++........+..
T Consensus       469 -------------------------------------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~  511 (791)
T 3m0c_C          469 -------------------------------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE  511 (791)
T ss_dssp             -------------------------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC
T ss_pred             -------------------------------------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC
Confidence                                                 01235678888776555544 4568899999875544333444


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCcc
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGL--DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG-SEDNAVKIWDLRKRR  397 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~  397 (471)
                      .......|++.|.+.+|+....  .+.|.+.++........+.........|++++.+..|+.+ ...+.|...++....
T Consensus       512 ~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          512 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            4456789999997666655543  3689999986544433344344678999999866666555 455779999986543


Q ss_pred             c
Q psy11350        398 L  398 (471)
Q Consensus       398 ~  398 (471)
                      .
T Consensus       592 ~  592 (791)
T 3m0c_C          592 R  592 (791)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.94  E-value=0.0039  Score=63.10  Aligned_cols=225  Identities=11%  Similarity=-0.015  Sum_probs=126.5

Q ss_pred             CCcEEEEeCCCCc-eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEEC
Q psy11350        173 SGLCKLWTVPECE-LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       173 dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  251 (471)
                      ...|+..++.... ....+...-....+|+|++.+..    ++.+-...+.|..++++.......+....-.....+++.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~----ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD   92 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL----IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   92 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTE----EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCE----EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence            6778888886543 12222223445779999997763    444545568899999865532222222222368899999


Q ss_pred             CCCCEEEEEeC-CCeEEeccc----cccccCCCCcceEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEeeCCCCC
Q psy11350        252 PSGRFLGTCCW-DHSWRLDTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLWDLNQGQEVLHQEGHGKP  324 (471)
Q Consensus       252 ~~~~~i~~~~~-d~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~  324 (471)
                      +.+..++.+.. .+.+.....    ...+....-.....|++.|.+.+|+.+..  .+.|...++............-..
T Consensus        93 ~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~  172 (619)
T 3s94_A           93 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW  172 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred             ecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence            97666655543 344433211    11222122234678999997666666653  467887887644333333333456


Q ss_pred             eEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchhee
Q psy11350        325 VYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  402 (471)
                      .+.+++++++..|+.+ ...+.|..+|+..........+......+|++..+ ..+++-...+.|...|..+++.+..+
T Consensus       173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            7899999976655555 45678999998654433322222233457777655 44455556788999998887655444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.93  E-value=5.9e-05  Score=77.69  Aligned_cols=181  Identities=8%  Similarity=-0.098  Sum_probs=102.6

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc---ceeeecCCCCcceEEEE
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT---PLANLEGHEPFRVSRIK  249 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~  249 (471)
                      .+.|++.++.+.+....+... ..+..|+|.+....    ++++-...+.|..+++....   ....+.           
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~----Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-----------  448 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNR----IYWSDLSQRMICSTQLDRAHGVSSYDTVI-----------  448 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTE----EEECCTTTTSBEEEESCCCCC-CCCCCBC-----------
T ss_pred             ccceEEEeCCCCcceeeeccC-cceEEEccccccCe----EEEEecCCCeEEEEecCCCCCCcceEEEE-----------
Confidence            467888888776555444332 34568899886652    33343455778888875410   000000           


Q ss_pred             ECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEE
Q psy11350        250 FHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM  328 (471)
Q Consensus       250 ~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  328 (471)
                                                ... ......|++.+.+.. +++-...+.|.++++........+.........+
T Consensus       449 --------------------------~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gi  501 (699)
T 1n7d_A          449 --------------------------SRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI  501 (699)
T ss_dssp             --------------------------CSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCE
T ss_pred             --------------------------eCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceE
Confidence                                      000 112445777754444 4444456789999987554333333223445788


Q ss_pred             EEeCCCCEEEEEeC-C-CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCc
Q psy11350        329 SFQGDGSVVATGGL-D-AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY-HLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       329 ~~s~d~~~l~t~~~-d-g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~  396 (471)
                      +++|.+.+|+.+.. . +.|.++++........+.........|+|+|++. ++++-+..+.|.++++...
T Consensus       502 avDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          502 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             ECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             EEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            99986555554432 2 6788887754322222222234577899998754 4455556678999998743

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.92  E-value=0.026  Score=57.16  Aligned_cols=229  Identities=6%  Similarity=-0.099  Sum_probs=142.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      .+|+.+. .+.|+..++.+......+. ..-..+.+|+|++....    ++.+-..++.|..+++........+.... .
T Consensus         7 ~~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~----lywtD~~~~~I~r~~~~g~~~~~v~~~g~-~   80 (628)
T 4a0p_A            7 AFLLFSR-RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNR----IYWTDISLKTISRAFMNGSALEHVVEFGL-D   80 (628)
T ss_dssp             CEEEEEE-TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTE----EEEEETTTTEEEEEETTSCSCEEEECSSC-S
T ss_pred             cEEEEEe-CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCE----EEEEECCCCeEEEEECCCCCcEEEEeCCC-C
Confidence            3455443 6789999988665443332 12346779999997763    45565677899999986544333333222 2


Q ss_pred             ceEEEEECCCCCEEEEEeC-CCeEEecc----ccccccCCCCcceEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEE
Q psy11350        244 RVSRIKFHPSGRFLGTCCW-DHSWRLDT----PLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLWDLNQGQEVL  316 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~-d~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~  316 (471)
                      ....+++.+.+..|+.+.. .+.+....    ....+....-.....|++.|...+|+....  .+.|...++.......
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence            5678888877666655544 33333311    111222122335789999997666666653  5678888886544332


Q ss_pred             EeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        317 HQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       317 ~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      .. ........+++++++..|+.+. ..+.|..+|+..... ..+........++++.. +.++++-...+.|...|..+
T Consensus       161 l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          161 LV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             EE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             EE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence            23 3445678999999766666554 567899999865433 33333445567888865 45555655678899999877


Q ss_pred             ccchhee
Q psy11350        396 RRLLKWC  402 (471)
Q Consensus       396 ~~~~~~~  402 (471)
                      ++....+
T Consensus       238 g~~~~~l  244 (628)
T 4a0p_A          238 GQNRTII  244 (628)
T ss_dssp             CCSCEEE
T ss_pred             CCceEEE
Confidence            7655444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.85  E-value=0.0006  Score=65.87  Aligned_cols=111  Identities=10%  Similarity=0.012  Sum_probs=66.9

Q ss_pred             ceEEEEECCCCCEEEEEecC-C----eEEEEECCCCcEE--EEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC
Q psy11350        282 RVSRIKFHPSGRFLGTCCWD-H----SWRLWDLNQGQEV--LHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~d-g----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      ....|+|++++++|+++... +    .+.+++.. +...  ..+.. ......++++| +|.++++-..++.|+.++...
T Consensus       180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            35667777777655554431 1    23333322 2111  12211 22345788999 777777776788999999987


Q ss_pred             CeeEEEec-ccCcCEEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q psy11350        354 GRCIMFLE-GHLKSVFSVDFSPDGYHL-ATGSEDNAVKIWDLR  394 (471)
Q Consensus       354 ~~~~~~~~-~h~~~v~~~~~sp~~~~l-~s~s~dg~i~iwd~~  394 (471)
                      +....... +.......++|+|+|++| ++-...+.|..++..
T Consensus       258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            75422222 122457899999999955 444567889998765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.81  E-value=0.037  Score=55.97  Aligned_cols=207  Identities=7%  Similarity=-0.000  Sum_probs=126.5

Q ss_pred             cCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeec------CCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        153 RPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRG------HDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+.+++|.+....|+.+. ..+.|+.++.........+..      ....+..+++.+.+.+    +..+.+..+.|.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~n----LY~td~~~~~I~v  415 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY----IYWTCEATNVINV  415 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTE----EEEEETTTTEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCe----EEEEcCCCCEEEE
Confidence            4578899998877777665 457788888764433333322      2346789999887663    4556666788888


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-cCC--
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDH--  302 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg--  302 (471)
                      .+++ |+....+....                                      .....+|++.|...+|+... ...  
T Consensus       416 ~~~~-G~~~~~l~~~~--------------------------------------l~~Pr~iavdp~~g~ly~tD~g~~~~  456 (628)
T 4a0p_A          416 TRLD-GRSVGVVLKGE--------------------------------------QDRPRAVVVNPEKGYMYFTNLQERSP  456 (628)
T ss_dssp             EETT-SCEEEEEEECT--------------------------------------TCCEEEEEEETTTTEEEEEEEETTEE
T ss_pred             EECC-CCeEEEEEeCC--------------------------------------CCceeeEEEecCCCeEEEeecCCCCC
Confidence            8874 33322221111                                      12467788887444443332 222  


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEec-ccCcCEEEEEEcCCCCEEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~  380 (471)
                      .|...++............-...+.|++++++..|+.+. ..+.|...++.... ...+. .......+|+... +.+++
T Consensus       457 ~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~  534 (628)
T 4a0p_A          457 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYW  534 (628)
T ss_dssp             EEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEE
T ss_pred             eEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEE
Confidence            566667654333222332344568999999877666664 45789999985443 33332 3345678888764 45556


Q ss_pred             EEeCCCcEEEEECCCccchheecc
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +=...+.|...|..+++....+..
T Consensus       535 tD~~~~~i~~~~k~~G~~~~~i~~  558 (628)
T 4a0p_A          535 IDKQQQMIEKIDMTGREGRTKVQA  558 (628)
T ss_dssp             EETTTTEEEEEETTSSSCCEEEEC
T ss_pred             EECCCCeEEEEECcCCCCcEEEec
Confidence            656677888889888887666554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.80  E-value=0.0029  Score=57.67  Aligned_cols=163  Identities=12%  Similarity=0.145  Sum_probs=105.7

Q ss_pred             CCCEEEEEEeeCCCCCCccEEEEEe-CCCcEEEEeCCCCcceee-ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc
Q psy11350        194 DCNVGAIEFHPLPSEGAVCSLASCA-QDGSVKLWSLDKDTPLAN-LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP  271 (471)
Q Consensus       194 ~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~  271 (471)
                      ...--++.|++...     .|..++ ..++|..|+...+..... +..-.                              
T Consensus        12 ~~yPE~~~wd~~~g-----~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s------------------------------   56 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQ-----VFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS------------------------------   56 (334)
T ss_dssp             TCCCSCEEEETTTT-----EEEEEETTTTEEEEECTTTCCEEEECCTTTC------------------------------
T ss_pred             ccCCcCccCcCCCC-----EEEEEeccCCEEEEEcCCCCeEEEEecCCcc------------------------------
Confidence            33445788988665     455555 789999999865533222 11100                              


Q ss_pred             cccccCCCCcceEEEEE---CCCCCEEEEEe-------------cCCeEEEEECC---CCcEEEEeeC------------
Q psy11350        272 LANLEGHEPFRVSRIKF---HPSGRFLGTCC-------------WDHSWRLWDLN---QGQEVLHQEG------------  320 (471)
Q Consensus       272 ~~~~~~~~~~~v~~l~~---~~~~~~l~~~~-------------~dg~i~iwd~~---~~~~~~~~~~------------  320 (471)
                         ..+.....+..|.|   .|+++++++..             .+..|..||+.   +++.+....-            
T Consensus        57 ---~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g  133 (334)
T 2p9w_A           57 ---SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAG  133 (334)
T ss_dssp             ---CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHS
T ss_pred             ---ccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccc
Confidence               00010123467777   46665555433             25779999998   7776654431            


Q ss_pred             -CCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCeeEEEec------ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        321 -HGKPVYCMSFQGDGSVVATGGLD-AFGRVWDLRTGRCIMFLE------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       321 -~~~~v~~~~~s~d~~~l~t~~~d-g~i~iwd~~~~~~~~~~~------~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                       -......++..++|+..++++.. +.|...+.... .+..+.      ......+.|+++|+|+.|++....|.|..+|
T Consensus       134 ~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          134 KRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             SCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             ccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence             11247899999999999999888 88888876533 333221      1122367999999999988887799999999


Q ss_pred             CCC
Q psy11350        393 LRK  395 (471)
Q Consensus       393 ~~~  395 (471)
                      +.+
T Consensus       213 ~~~  215 (334)
T 2p9w_A          213 VSK  215 (334)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            884

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.76  E-value=0.013  Score=54.39  Aligned_cols=207  Identities=13%  Similarity=0.079  Sum_probs=118.4

Q ss_pred             CcCeEEEEEecCCCEEEEEe------------CCCcEEEEeCCC--CceEE-Eeec-----CCCCEEEEEEeeCCCCCCc
Q psy11350        152 TRPISYCSFSPDSQHVATAS------------WSGLCKLWTVPE--CELVQ-TFRG-----HDCNVGAIEFHPLPSEGAV  211 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~------------~dg~i~iwd~~~--~~~~~-~~~~-----h~~~v~~l~~~~~~~~~~~  211 (471)
                      ....-.+.+.|+|..+++++            .+|.|.++|+.+  ++... .+.+     .......|.+.++.. ...
T Consensus        49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d-g~~  127 (355)
T 3sre_A           49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD-NTV  127 (355)
T ss_dssp             CSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT-CCE
T ss_pred             CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC-CcE
Confidence            34556777888875544441            689999999873  33221 2222     224677888877521 112


Q ss_pred             cEEEEE-eC--CCcEEEEeCCCCc----ceeeecCCCCcceEEEEECCCCCEEEEEeC---C--------------Ce-E
Q psy11350        212 CSLASC-AQ--DGSVKLWSLDKDT----PLANLEGHEPFRVSRIKFHPSGRFLGTCCW---D--------------HS-W  266 (471)
Q Consensus       212 ~~l~s~-~~--dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~---d--------------~~-~  266 (471)
                       +|+.+ ..  +.+|.+|++..+.    .+..+.+..-...+++.+.++|.+.++...   |              +. +
T Consensus       128 -~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          128 -YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             -EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             -EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence             34443 22  4678888765432    334455555557899999999998777541   1              11 2


Q ss_pred             EeccccccccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCC-CcE--EEEeeCCCCCeEEEEEeC-CCCEEEEEe
Q psy11350        267 RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQ-GQE--VLHQEGHGKPVYCMSFQG-DGSVVATGG  341 (471)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-d~~~l~t~~  341 (471)
                      ++...........-...+.++|+||++.|+++. ..+.|..|++.. ++.  ...+ ......-.+++.+ +|++.+++.
T Consensus       207 r~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          207 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            222111111011112467899999999887765 568899999864 322  2223 2245567889999 598877665


Q ss_pred             CC-CeEEEEeCC--CCeeEEEec
Q psy11350        342 LD-AFGRVWDLR--TGRCIMFLE  361 (471)
Q Consensus       342 ~d-g~i~iwd~~--~~~~~~~~~  361 (471)
                      .+ +.|..|+..  .+..+..+.
T Consensus       286 ~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          286 PNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             SCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CCceEEEEECCCCCCCCEEEEEE
Confidence            44 344444443  244444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.75  E-value=0.066  Score=58.10  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=51.6

Q ss_pred             CcCeEEEEEecC------CCEEEEEeC-CCcEEEEeCCCCceEEEeecC-CCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        152 TRPISYCSFSPD------SQHVATASW-SGLCKLWTVPECELVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       152 ~~~V~~~~~s~~------~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      ...|+|+++.|.      ++++|.|.+ |++|+|+++++.+.+....-. .....++.+...+.   ..+|..|-.||.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~---~~~L~igl~dG~l  629 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFES---SHYLLCALGDGAL  629 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETT---EEEEEEEETTSEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCC---CcEEEEEeCCCeE
Confidence            457999999864      468999998 999999999987766543321 23445555543321   1268889999988


Q ss_pred             EEEeCC
Q psy11350        224 KLWSLD  229 (471)
Q Consensus       224 ~iwd~~  229 (471)
                      .-+.++
T Consensus       630 ~~~~~d  635 (1158)
T 3ei3_A          630 FYFGLN  635 (1158)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            665543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.63  E-value=0.04  Score=50.96  Aligned_cols=227  Identities=12%  Similarity=0.049  Sum_probs=125.1

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE--Ee----ecCCCCEEEEEEeeC---CCCCCccEEEEE---e
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ--TF----RGHDCNVGAIEFHPL---PSEGAVCSLASC---A  218 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~----~~h~~~v~~l~~~~~---~~~~~~~~l~s~---~  218 (471)
                      .-...+.|+|.|||.++++--..|.|++++..+++...  .+    .........|+++|+   +.     .|+..   .
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-----~lYv~yt~~  104 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-----MVYAYFTSA  104 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-----EEEEEEECS
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC-----EEEEEEecC
Confidence            34567899999999977776558999999876655422  11    123466789999995   22     23332   2


Q ss_pred             CCCcEEEEeCCCCc----------ce-eeecCCCCcceEEEEECCCCCEEEEEeCC--------------CeEEeccccc
Q psy11350        219 QDGSVKLWSLDKDT----------PL-ANLEGHEPFRVSRIKFHPSGRFLGTCCWD--------------HSWRLDTPLA  273 (471)
Q Consensus       219 ~dg~i~iwd~~~~~----------~~-~~~~~~~~~~v~~~~~s~~~~~i~~~~~d--------------~~~~~~~~~~  273 (471)
                      .++.|.-|.+..+.          .+ ..+..........+.|.|||.++++.+..              +.+++...-.
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            44556666654421          11 11222111135679999999877775432              2244421111


Q ss_pred             ----------cccCCCCcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCc------------------EEEEeeCCCCC
Q psy11350        274 ----------NLEGHEPFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQ------------------EVLHQEGHGKP  324 (471)
Q Consensus       274 ----------~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------------~~~~~~~~~~~  324 (471)
                                .+....-.....++|+|+|.++++-. .++.=.|.-+..+.                  ++..+..+...
T Consensus       185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence                      00000011356899999876554432 22222222222221                  12222222235


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCee----EEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC----IMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       325 v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      ...++|. +|.+++..-..+.|....+.....    ...+.+..+.+..|+..|||.++++..
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            5677776 466666665666676666654432    233444457899999999998766643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.56  E-value=0.082  Score=53.39  Aligned_cols=201  Identities=9%  Similarity=0.003  Sum_probs=115.9

Q ss_pred             cCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        153 RPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ..+.+++|.+.+..|+.+. ..+.|+.+++........+...-.....+++.+.+.+    ++++-+..+.|.+.++...
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~----lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARN----LYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCc----EEEEeCCCCcEEEEeCCCC
Confidence            3467888988666666554 4678888887654443333333345668888875553    4555556678888887543


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec--CCeEEEEEC
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLWDL  309 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~  309 (471)
                      . ...+....                                      -....+|++.|...+|+.+..  .+.|...++
T Consensus       425 ~-~~~l~~~~--------------------------------------l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~  465 (619)
T 3s94_A          425 M-RKILISED--------------------------------------LEEPRAIVLDPMVGYMYWTDWGEIPKIERAAL  465 (619)
T ss_dssp             S-CEEEECTT--------------------------------------CCSEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             e-EEEEEECC--------------------------------------CCCeeeEEEEcCCCcEEEecCCCCCEEEEEcc
Confidence            2 22221111                                      124677888876445544432  356766666


Q ss_pred             CCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        310 NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       310 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      ............-...+.|++++++..|+.+. ..+.|..+++........+........+|+...+ .++++-...+.|
T Consensus       466 dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I  544 (619)
T 3s94_A          466 DGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSI  544 (619)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCE
T ss_pred             CCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeE
Confidence            54332222233345678999998766666654 4578999998644322222222233445666533 444444456778


Q ss_pred             EEEECCCcc
Q psy11350        389 KIWDLRKRR  397 (471)
Q Consensus       389 ~iwd~~~~~  397 (471)
                      ...|..++.
T Consensus       545 ~~~~k~~g~  553 (619)
T 3s94_A          545 ERVHKRSAE  553 (619)
T ss_dssp             EEEESSSCC
T ss_pred             EEEEcCCCc
Confidence            888887773

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.51  E-value=0.0081  Score=54.62  Aligned_cols=221  Identities=13%  Similarity=0.028  Sum_probs=107.8

Q ss_pred             CCCEEEEEe-CC-----CcEEEEeCCCCceEEEe--ecCCCCEEEEEEeeCCCCCCccEEEEEeCC-----CcEEEEeCC
Q psy11350        163 DSQHVATAS-WS-----GLCKLWTVPECELVQTF--RGHDCNVGAIEFHPLPSEGAVCSLASCAQD-----GSVKLWSLD  229 (471)
Q Consensus       163 ~~~~l~tg~-~d-----g~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~  229 (471)
                      ++.+++.|+ .+     ..+.+||+.+.+-...-  ....... +++ ..++.     +++.|+.+     ..+.+||+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~-----l~v~GG~~~~~~~~~~~~~d~~   86 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDR-----IYVIGGYDGRSRLSSVECLDYT   86 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTE-----EEEECCBCSSCBCCCEEEEETT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCE-----EEEEcCCCCCccCceEEEEECC
Confidence            445566666 32     47889998776533221  1111111 122 22333     56667654     468899988


Q ss_pred             CCc---ceeeecCCCCcceEEEEECCCCCEEEEEeCCCe------EEe------ccccccccCCCCcceEEEEECCCCCE
Q psy11350        230 KDT---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------WRL------DTPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       230 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~------~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      +++   -...-.......-.+++. .+++.++.|+.++.      +.+      |.....+... ......+.+  +++.
T Consensus        87 ~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~i  162 (301)
T 2vpj_A           87 ADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAGLVVA--SGVI  162 (301)
T ss_dssp             CCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSCEEEEE--TTEE
T ss_pred             CCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccceEEEE--CCEE
Confidence            776   322211111111112222 26777777765432      111      1111111111 111222222  5667


Q ss_pred             EEEEecC-----CeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCeeEEE--ec
Q psy11350        295 LGTCCWD-----HSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGRCIMF--LE  361 (471)
Q Consensus       295 l~~~~~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~~~~~--~~  361 (471)
                      ++.|+.+     ..+.+||+.+.+-...-.. ....-.+++. -++++++.|+.+     ..+.+||+.+.+-...  +.
T Consensus       163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            7777654     4588999887653322111 1111112222 266788888764     4689999987753322  21


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy11350        362 GHLKSVFSVDFSPDGYHLATGSED-----NAVKIWDLRKRR  397 (471)
Q Consensus       362 ~h~~~v~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  397 (471)
                      ........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       242 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          242 TPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            11112222333  66777777755     357788887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.45  E-value=0.032  Score=52.12  Aligned_cols=223  Identities=14%  Similarity=0.073  Sum_probs=118.4

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe-------ecCCCCEEEEEEeeC---CCCCCccEEEEEeC----
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTF-------RGHDCNVGAIEFHPL---PSEGAVCSLASCAQ----  219 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~---~~~~~~~~l~s~~~----  219 (471)
                      ....|+|.|+|++|+++...|.|++++.. +.....+       .........|+|+|+   +..    +.++-+.    
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~----lYv~~~~~~~~   93 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR----IWLSYSEVGDD   93 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE----EEEEEEEECSS
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE----EEEEEeCCCCC
Confidence            46789999999944455568999999853 3322111       112345789999995   331    3333222    


Q ss_pred             ---CCcEEEEeCCCCc----cee----eecC--CCCcceEEEEECCCCCEEEEEeCC-------------C-eEEecccc
Q psy11350        220 ---DGSVKLWSLDKDT----PLA----NLEG--HEPFRVSRIKFHPSGRFLGTCCWD-------------H-SWRLDTPL  272 (471)
Q Consensus       220 ---dg~i~iwd~~~~~----~~~----~~~~--~~~~~v~~~~~s~~~~~i~~~~~d-------------~-~~~~~~~~  272 (471)
                         ...|..|++..+.    ...    .+..  ........+.|.|||.++++.+..             + .+++...-
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence               2356666654331    111    1111  011124679999999766654432             1 24442111


Q ss_pred             c---------------cccCCCCcceEEEEECCCCCEEEEEecCC--eEEEEECCCC-----------------------
Q psy11350        273 A---------------NLEGHEPFRVSRIKFHPSGRFLGTCCWDH--SWRLWDLNQG-----------------------  312 (471)
Q Consensus       273 ~---------------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~-----------------------  312 (471)
                      .               .+....-.....++|+|....|+++....  .=.|.-+..+                       
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0               00000012367899999434444443321  1112111111                       


Q ss_pred             --------cEEEEeeCCCCCeEEEEEeC-------CCCEEEEEeCCCeEEEEeCCCCeeEEE---ecccCcCEEEEEEcC
Q psy11350        313 --------QEVLHQEGHGKPVYCMSFQG-------DGSVVATGGLDAFGRVWDLRTGRCIMF---LEGHLKSVFSVDFSP  374 (471)
Q Consensus       313 --------~~~~~~~~~~~~v~~~~~s~-------d~~~l~t~~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~sp  374 (471)
                              .++..+. +......+.|.+       +|.++++.-..+.|...++..++....   +......+..+++.|
T Consensus       254 ~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             BSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                    1112222 234566788864       467777777788888888876644322   222335799999999


Q ss_pred             CCCEEEEE
Q psy11350        375 DGYHLATG  382 (471)
Q Consensus       375 ~~~~l~s~  382 (471)
                      ||.++++.
T Consensus       333 dG~lyv~t  340 (353)
T 2g8s_A          333 DGYLYVLT  340 (353)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99866653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.36  E-value=0.014  Score=53.03  Aligned_cols=219  Identities=12%  Similarity=0.091  Sum_probs=105.6

Q ss_pred             CCEEEEEeCC----CcEEEEeCCCCceEEE--eecCCCCEEEEEEeeCCCCCCccEEEEEeCC-----CcEEEEeCCCCc
Q psy11350        164 SQHVATASWS----GLCKLWTVPECELVQT--FRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-----GSVKLWSLDKDT  232 (471)
Q Consensus       164 ~~~l~tg~~d----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  232 (471)
                      +.+++.|+.+    ..+.+||+.+.+-...  +......- +++.. ++.     +++.|+.+     ..+.+||..+.+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~-----lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AGL-----VFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTE-----EEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CCE-----EEEEeCcCCCccccceEEECCCCCc
Confidence            3455566543    4688899877653322  11111111 22222 333     56666654     358889987765


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCe------EEe------ccccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------WRL------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~------~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      -...-.......-.+++. -++..++.|+.++.      +.+      |.....+... ......+.+  ++..++.|+.
T Consensus        89 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~  164 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-RSSVGVGVV--GGLLYAVGGY  164 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEEEEECCE
T ss_pred             eeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-ccCceEEEE--CCEEEEEeCC
Confidence            332221111111112222 25677777775542      111      1111111111 111222222  5566666654


Q ss_pred             C-------CeEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCeeEEE--ecccC
Q psy11350        301 D-------HSWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGRCIMF--LEGHL  364 (471)
Q Consensus       301 d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~~~~~--~~~h~  364 (471)
                      +       ..+.+||+.+.+-...  +....... +++.. ++++++.|+.+     ..+.+||+.+.+-...  +....
T Consensus       165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  242 (302)
T 2xn4_A          165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR  242 (302)
T ss_dssp             ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence            3       3588999987653322  11111111 22222 67788888764     3689999987643321  21111


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCcc
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDN-----AVKIWDLRKRR  397 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg-----~i~iwd~~~~~  397 (471)
                      .....+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       243 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          243 RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            11122222  667777777553     48888887764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.034  Score=54.03  Aligned_cols=196  Identities=11%  Similarity=0.044  Sum_probs=111.0

Q ss_pred             CEEEEEEeeC-CCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCC--CcceEEEEE-------CCCCCEEEEEeCCC-
Q psy11350        196 NVGAIEFHPL-PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE--PFRVSRIKF-------HPSGRFLGTCCWDH-  264 (471)
Q Consensus       196 ~v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~-------s~~~~~i~~~~~d~-  264 (471)
                      ....|+|.|. ..+    ++++....+.|++.|+.++..........  ......++|       +++|.+++++...+ 
T Consensus       140 ~p~~la~dp~~~~~----Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDH----LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEE----EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCCE----EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            3568999983 332    44444444678889987766554443322  225899999       99999777766554 


Q ss_pred             -------eEEec-cccccccC-------CCCcceEEEEECCCCC-EEEEEecCCeEEEEECC-------CCcE-------
Q psy11350        265 -------SWRLD-TPLANLEG-------HEPFRVSRIKFHPSGR-FLGTCCWDHSWRLWDLN-------QGQE-------  314 (471)
Q Consensus       265 -------~~~~~-~~~~~~~~-------~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~-------~~~~-------  314 (471)
                             ...+. .....+..       ..-.....++++|++. ++++-..++.|..+|+.       ++..       
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                   11221 11001110       0011245788899554 45555677889999987       4443       


Q ss_pred             ----EEE-e-eCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCC--CCee--EEEeccc---C------------cCEE
Q psy11350        315 ----VLH-Q-EGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLR--TGRC--IMFLEGH---L------------KSVF  368 (471)
Q Consensus       315 ----~~~-~-~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~--~~~~--~~~~~~h---~------------~~v~  368 (471)
                          ... + .+.....+.++|+|+|++|+.+ .....|+.++..  ++..  ...+-+.   .            ....
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence                111 1 1223445799999999954444 566788886543  3321  0122211   0            1244


Q ss_pred             -EEEEc-------CCCCEEEEEeCCCcEEEEECCCc
Q psy11350        369 -SVDFS-------PDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       369 -~~~~s-------p~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                       .++..       ++|.++++=.....|+.++ .++
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G  410 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG  410 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC
Confidence             44444       4556666666677788887 445

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.23  E-value=0.09  Score=48.98  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      .....++|.|++.      ++.+..+|.|.+++
T Consensus        31 ~~P~~ia~~pdG~------l~V~e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGG------MLIAERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSC------EEEEETTTEEEEEE
T ss_pred             CCceEEEEcCCCe------EEEEeCCCeEEEEE
Confidence            3467999999987      55556779999988

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.17  E-value=0.044  Score=50.42  Aligned_cols=142  Identities=11%  Similarity=0.222  Sum_probs=89.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      +++.....+-+.+||+ +|+.+..+...   .++.+..-|                                .+.+  .|
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~g---~~nnVD~r~--------------------------------~~~l--~g   83 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNTG---KLNNVDIRY--------------------------------DFPL--NG   83 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECCS---CEEEEEEEE--------------------------------EEEE--TT
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccCC---CcccEEEec--------------------------------cccc--CC
Confidence            5666777889999999 88887776532   222222111                                1111  22


Q ss_pred             C---EEEEEe-c--CCeEEEEECC--CCcEEEEeeC------CC-CCeEEEEE--eCC-CC-EEEEEeCCCeEEEEeCC-
Q psy11350        293 R---FLGTCC-W--DHSWRLWDLN--QGQEVLHQEG------HG-KPVYCMSF--QGD-GS-VVATGGLDAFGRVWDLR-  352 (471)
Q Consensus       293 ~---~l~~~~-~--dg~i~iwd~~--~~~~~~~~~~------~~-~~v~~~~~--s~d-~~-~l~t~~~dg~i~iwd~~-  352 (471)
                      +   ++++.. .  +++|.+|++.  +++ +..+..      .. ..+..+|+  +|. +. ++++...+|.+..|++. 
T Consensus        84 ~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~  162 (355)
T 3amr_A           84 KKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA  162 (355)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred             ceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence            2   222333 3  4789999773  333 444421      11 45667777  774 44 68888889999999883 


Q ss_pred             ------CCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        353 ------TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       353 ------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                            +.+.+.++.. .+.+..+...+....|+.+-.+..|..++.+
T Consensus       163 ~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          163 DKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             CTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             CCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence                  3356666663 3578899999988899999988666666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.16  E-value=0.038  Score=51.94  Aligned_cols=161  Identities=9%  Similarity=0.050  Sum_probs=99.8

Q ss_pred             EecCCCEEEEEeCCCcEEEEeCCCCceEEEeecC----CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCccee
Q psy11350        160 FSPDSQHVATASWSGLCKLWTVPECELVQTFRGH----DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLA  235 (471)
Q Consensus       160 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  235 (471)
                      .+.+|..|+.+- ++.||.-++......+.++..    -..|..+..+|.|.     +|+.. .+..|.|-.+..+....
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-----lLAl~-g~~~V~Vv~LP~~~~~~  100 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-----LLCLF-NDNEIFVMEVPWGYSNV  100 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-----EEEEE-CSSEEEEEECCTTCSCC
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-----EEEEe-cCCeEEEEEecCccccC
Confidence            456777777776 688888887754445555433    23678899999998     56555 45789999887432111


Q ss_pred             eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECC---CCCEEEEEecCCeEEEEECCCC
Q psy11350        236 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHP---SGRFLGTCCWDHSWRLWDLNQG  312 (471)
Q Consensus       236 ~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~  312 (471)
                      .-... ...+.+-.|                .+..    .......+|..+.|||   .+..|++-..|+.|++||+...
T Consensus       101 ~~~~~-~~~~q~~ty----------------~l~~----~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          101 EDVSI-QDAFQIFHY----------------SIDE----EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             CCHHH-HHTTEEEEE----------------EGGG----CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             ccccc-ccccceeEE----------------EcCC----cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence            10000 001111111                1111    1111245799999999   4568999999999999999852


Q ss_pred             --cEEEEe---------eCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEE
Q psy11350        313 --QEVLHQ---------EGHGKPVYCMSFQGDGSVVATGG--LDAFGRVW  349 (471)
Q Consensus       313 --~~~~~~---------~~~~~~v~~~~~s~d~~~l~t~~--~dg~i~iw  349 (471)
                        ++. .+         ......|.+++|.+++-.|...+  ..|.|+-.
T Consensus       160 ~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          160 QEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              122 22         22336788999999887666644  77888643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.12  E-value=0.02  Score=53.77  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             CCCCeEEEEEeC---CCCEEEEEeCCCeEEEEeCCCC--eeEEEec---------ccCcCEEEEEEcCCCCEEEEEe--C
Q psy11350        321 HGKPVYCMSFQG---DGSVVATGGLDAFGRVWDLRTG--RCIMFLE---------GHLKSVFSVDFSPDGYHLATGS--E  384 (471)
Q Consensus       321 ~~~~v~~~~~s~---d~~~l~t~~~dg~i~iwd~~~~--~~~~~~~---------~h~~~v~~~~~sp~~~~l~s~s--~  384 (471)
                      ...+|..+.|+|   .+..|++-..|+.|++||+...  ++. .+.         .....|.+++|.+++-.|+..+  .
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~  201 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTE  201 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTT
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCC
Confidence            357899999999   4678999999999999999852  222 232         2235789999999887777755  7


Q ss_pred             CCcEEE
Q psy11350        385 DNAVKI  390 (471)
Q Consensus       385 dg~i~i  390 (471)
                      .|.|+-
T Consensus       202 ~GDIYA  207 (452)
T 3pbp_A          202 GGDIFA  207 (452)
T ss_dssp             SCEEEE
T ss_pred             CCCEEE
Confidence            787754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.10  E-value=0.037  Score=50.41  Aligned_cols=220  Identities=10%  Similarity=0.017  Sum_probs=107.3

Q ss_pred             cCCCEEEEEeCC----CcEEEEeCCCCceEEEe--ecCCCCEEEEEEeeCCCCCCccEEEEEeC----C-----CcEEEE
Q psy11350        162 PDSQHVATASWS----GLCKLWTVPECELVQTF--RGHDCNVGAIEFHPLPSEGAVCSLASCAQ----D-----GSVKLW  226 (471)
Q Consensus       162 ~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~----d-----g~i~iw  226 (471)
                      -++.+++.|+.+    ..+.+||+.+.+-...-  ......- +++.. ++.     +++.|+.    +     ..+.+|
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~-----lyv~GG~~~~~~~~~~~~~~~~~   95 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGL-----LYAVGGRNNSPDGNTDSSALDCY   95 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTE-----EEEECCEEEETTEEEECCCEEEE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCE-----EEEECCCcCCCCCCeecceEEEE
Confidence            356677777642    46889998776543321  1111111 22222 333     5566655    2     468889


Q ss_pred             eCCCCcceeeecCCCCc-ceEEEEECCCCCEEEEEeCCCe------EEe------ccccccccCCCCcceEEEEECCCCC
Q psy11350        227 SLDKDTPLANLEGHEPF-RVSRIKFHPSGRFLGTCCWDHS------WRL------DTPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~i~~~~~d~~------~~~------~~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      |+.+.+-...-...... ....+.+  +++.++.|+.++.      +.+      |.....+... ......+.+  ++.
T Consensus        96 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~  170 (308)
T 1zgk_A           96 NPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVL--NRL  170 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTE
T ss_pred             CCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEE--CCE
Confidence            98776532221111111 1222222  6677777664432      111      1111111111 111222333  566


Q ss_pred             EEEEEecC-----CeEEEEECCCCcEEEEe--eCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCeeEE--E
Q psy11350        294 FLGTCCWD-----HSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGRCIM--F  359 (471)
Q Consensus       294 ~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~~~~--~  359 (471)
                      .++.|+.+     ..+.+||+.+.+-...-  .........+.+  ++++++.|+.+     ..+.+||+.+.+-..  .
T Consensus       171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~  248 (308)
T 1zgk_A          171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  248 (308)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence            77777654     45899998876433221  111111222222  67788888765     468999998764332  1


Q ss_pred             ecccCcCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy11350        360 LEGHLKSVFSVDFSPDGYHLATGSED-----NAVKIWDLRKRR  397 (471)
Q Consensus       360 ~~~h~~~v~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  397 (471)
                      +.........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       249 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          249 MKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            2111111222222  56777777654     347788877654

>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1

Probab=97.05  E-value=0.00054  Score=46.42  Aligned_cols=29  Identities=38%  Similarity=0.496  Sum_probs=26.3

Q ss_pred             ccCCChHHHHHHHHHhCCCcccccccccH
Q psy11350         79 NVSTDDNQVKLNLRQLGEPICLFGEEYSL  107 (471)
Q Consensus        79 ~~~~~~~~~~~~l~~~~~p~~~~~~~~s~  107 (471)
                      .+++.+.+|+..||.+|+||++|||...-
T Consensus        24 ~v~~~d~eV~~~LR~lgEPi~LFGE~~~~   52 (76)
T 2dk4_A           24 PMTLSRQEVIRRLRERGEPIRLFGETDYD   52 (76)
T ss_dssp             SCCSCHHHHHHHHHHHTCCSSCTTCCHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCeeecCCChHH
Confidence            57899999999999999999999998554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.02  E-value=0.043  Score=49.88  Aligned_cols=93  Identities=10%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             CeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCeeEE--EecccCcCEEEEEEc
Q psy11350        302 HSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGRCIM--FLEGHLKSVFSVDFS  373 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s  373 (471)
                      ..+.+||+.+.+-...-.. ....-.+++.. ++++++.|+.+     ..+.+||+.+.+-..  .+........++.+ 
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  246 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-  246 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence            4588899887643222111 11111122222 66777777754     358899988764221  22211122233333 


Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCcc
Q psy11350        374 PDGYHLATGSED-----NAVKIWDLRKRR  397 (471)
Q Consensus       374 p~~~~l~s~s~d-----g~i~iwd~~~~~  397 (471)
                       ++++++.|+.+     ..+.+||+.+.+
T Consensus       247 -~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          247 -GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             -TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             -CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence             66788888754     458888887764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.98  E-value=0.29  Score=47.22  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=62.3

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE--Eeec------CCCCEEEEEEeeCCCCCCccEEEEEeC-----
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ--TFRG------HDCNVGAIEFHPLPSEGAVCSLASCAQ-----  219 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~------h~~~v~~l~~~~~~~~~~~~~l~s~~~-----  219 (471)
                      ...++|+|.|+|+++++-...+.|++++..+++...  .+..      .......|+|+|+-..... +.++-+.     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~-lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY-IYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE-EEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE-EEEEEeccccCC
Confidence            456799999999977766544579998866555432  2221      2456779999996211111 2333221     


Q ss_pred             -------CCcEEEEeCCCC-------ccee-eecCCCCcceEEEEECCCCCEEEEEeC
Q psy11350        220 -------DGSVKLWSLDKD-------TPLA-NLEGHEPFRVSRIKFHPSGRFLGTCCW  262 (471)
Q Consensus       220 -------dg~i~iwd~~~~-------~~~~-~~~~~~~~~v~~~~~s~~~~~i~~~~~  262 (471)
                             ...|.-|++..+       +.+. .+..........++|.|||.++++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   134555554322       1111 122222225789999999997776553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.97  E-value=0.26  Score=46.51  Aligned_cols=237  Identities=13%  Similarity=0.169  Sum_probs=158.6

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-Ccceee
Q psy11350        158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-DTPLAN  236 (471)
Q Consensus       158 ~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~  236 (471)
                      .-.+|..+.||.=. ..++.|+|+++...+..+.-. ..|.-=.|.....      |+..+ +..|.-|++.. ..+.+.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~------l~lVT-~taVyHWsi~~~s~P~kv  141 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT------VALVT-DNAVYHWSMEGESQPVKM  141 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTE------EEEEC-SSEEEEEESSSSCCCEEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCe------EEEEc-CCeeEEecccCCCCchhh
Confidence            34678888777665 789999999998888887654 4666777777653      44443 57899999964 356666


Q ss_pred             ecCCC---CcceEEEEECCCCCEEEEEeC---CCe----EEecc----ccccccCCCCcceEEEEECCC---CCEEEEEe
Q psy11350        237 LEGHE---PFRVSRIKFHPSGRFLGTCCW---DHS----WRLDT----PLANLEGHEPFRVSRIKFHPS---GRFLGTCC  299 (471)
Q Consensus       237 ~~~~~---~~~v~~~~~s~~~~~i~~~~~---d~~----~~~~~----~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~  299 (471)
                      |..|.   ...|.....+++.++++..+-   ++.    +.+..    ....+.+| ......+.+.-+   ...|+.+.
T Consensus       142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh-aa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH-AASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS-EEEEEEEECTTCSSEEEEEEEEE
T ss_pred             eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee-eeeeEEEecCCCCCCceEEEEEE
Confidence            66543   347888888999998875542   332    33322    23345566 212222222211   12444444


Q ss_pred             cC---CeEEEEECCCC---c------EEEEeeC---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        300 WD---HSWRLWDLNQG---Q------EVLHQEG---HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       300 ~d---g~i~iwd~~~~---~------~~~~~~~---~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      ..   +.++|.++...   .      .+..+..   -.+--.++..++....++.-+.-|.|++||+.++.++..-+-..
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~  300 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC
Confidence            43   78999998543   1      1111111   13334588899988889999999999999999999998877677


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      ..|..-+-+....-++.....|.|.--.++....+.-+..
T Consensus       301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~  340 (494)
T 1bpo_A          301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITN  340 (494)
T ss_dssp             SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHH
T ss_pred             CceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhh
Confidence            7887777776666677777999998888888887765543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.82  E-value=0.14  Score=47.51  Aligned_cols=163  Identities=13%  Similarity=0.081  Sum_probs=93.5

Q ss_pred             CCCcEEEEeCCCC--cce-eeecCC----CCcceEEEEECC--CCC-EEEEEeCC---Ce---EEecc------cccccc
Q psy11350        219 QDGSVKLWSLDKD--TPL-ANLEGH----EPFRVSRIKFHP--SGR-FLGTCCWD---HS---WRLDT------PLANLE  276 (471)
Q Consensus       219 ~dg~i~iwd~~~~--~~~-~~~~~~----~~~~v~~~~~s~--~~~-~i~~~~~d---~~---~~~~~------~~~~~~  276 (471)
                      .+|.|.++|+.+.  +.. ..+.+.    .......+.+.+  ++. +|+++...   ..   +++..      ....+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6889999998743  211 122221    123566777655  454 45444332   22   22211      122333


Q ss_pred             CCCCcceEEEEECCCCCEEEEEe-----------------cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEE
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCC-----------------WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  339 (471)
                      +..-...+.+.+.++|.+.++..                 ..|.|..+|..  +. ..+...-..-+.++|+||++.|+.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEE
Confidence            33334688999999998777653                 12556666653  22 222222345689999999987766


Q ss_pred             Ee-CCCeEEEEeCCC-Cee--EEEecccCcCEEEEEEcC-CCCEEEEEeCC
Q psy11350        340 GG-LDAFGRVWDLRT-GRC--IMFLEGHLKSVFSVDFSP-DGYHLATGSED  385 (471)
Q Consensus       340 ~~-~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~~~~sp-~~~~l~s~s~d  385 (471)
                      +. ..+.|+.|++.. ++.  ...+ ...+....+++.+ +|++.+++..+
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            64 578899999863 322  2233 2345678889988 58877766544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.82  E-value=0.16  Score=45.96  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=55.5

Q ss_pred             CCCEEEEEecC------CeEEEEECCCCcEEEEeeCC-CCCeEEEEEeCCCCEEEEEeC---------CCeEEEEeCCCC
Q psy11350        291 SGRFLGTCCWD------HSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQGDGSVVATGGL---------DAFGRVWDLRTG  354 (471)
Q Consensus       291 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~~~---------dg~i~iwd~~~~  354 (471)
                      ++..++.|+.+      ..+.+||+.+.+-...-... ...-.+++. -++++++.|+.         -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            45566666654      45888998876532221111 111112222 26677777764         345889999877


Q ss_pred             eeEEE--ecccCcCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy11350        355 RCIMF--LEGHLKSVFSVDFSPDGYHLATGSED-----NAVKIWDLRKRR  397 (471)
Q Consensus       355 ~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  397 (471)
                      +-...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       180 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          180 TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            43221  2111111222223  56777777654     458899988764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.80  E-value=0.61  Score=48.30  Aligned_cols=227  Identities=11%  Similarity=0.023  Sum_probs=131.2

Q ss_pred             CcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee----cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR----GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ...|.++.-..+|. |-.|+.+| |..||-.+   ...+.    .....|.++.....+      .|..|+.+| +..||
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g------~lWigT~~G-l~~yd   88 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNT------YLYMGTDNG-ILVYN   88 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTT------EEEEEETTE-EEEEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCC------cEEEEeCCC-eEEEe
Confidence            46799998887774 55667666 66677432   22221    123568888776665      366676655 78899


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccccc---c----cCCCCcceEEEEECCCCCEEEEEec
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN---L----EGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~---~----~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      ..+.+.... .......|.++.. .+| .+.+++.+|.+.+......   +    .......|.++....++...+ ++.
T Consensus        89 ~~~~~f~~~-~~~~~~~i~~i~~-~~g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~  164 (758)
T 3ott_A           89 YRADRYEQP-ETDFPTDVRTMAL-QGD-TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY  164 (758)
T ss_dssp             TTTTEECCC-SCCCCSCEEEEEE-ETT-EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET
T ss_pred             CCCCEEECc-ccCCCceEEEEEe-cCC-cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC
Confidence            876643221 1111224666654 344 5666666666544221111   1    111123588888887776544 554


Q ss_pred             CCeEEEEECCCCcEEEEeeC-----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        301 DHSWRLWDLNQGQEVLHQEG-----HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      . -|..+|..+++.......     ....|.++...+++..|..|+. +-+..+|..+++...........|.++...++
T Consensus       165 ~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~  242 (758)
T 3ott_A          165 N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGN  242 (758)
T ss_dssp             T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTT
T ss_pred             C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCC
Confidence            4 588899877653321111     1234888888877765555553 45888998776533211112346888888888


Q ss_pred             CCEEEEEeCCCcEEEEECCCccc
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRL  398 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~  398 (471)
                      |.+.+. +.+ -+.+++..+++.
T Consensus       243 g~lWig-T~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          243 GDLLAG-TDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             CCEEEE-ETT-EEEEECCTTSCC
T ss_pred             CCEEEE-eCC-ceeEEecCCCcE
Confidence            776554 444 578888776543

>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}

Probab=96.79  E-value=0.00069  Score=37.27  Aligned_cols=20  Identities=65%  Similarity=0.974  Sum_probs=17.9

Q ss_pred             HHHHHHHhCCCccccccccc
Q psy11350         87 VKLNLRQLGEPICLFGEEYS  106 (471)
Q Consensus        87 ~~~~l~~~~~p~~~~~~~~s  106 (471)
                      |+..|+.+|+||++|||...
T Consensus         2 V~~~LR~lgePi~lFGE~~~   21 (31)
T 1mzw_B            2 VKASLRALGEPITLFGEGPA   21 (31)
T ss_dssp             HHHHHHHTTCCSEETTCCHH
T ss_pred             HHHHHHHcCCCeeecCCChH
Confidence            67899999999999999854

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.63  E-value=0.13  Score=46.99  Aligned_cols=104  Identities=11%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             CCCEEEEEec------CCeEEEEECCCCcEEEEeeCC-CCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCeeEE
Q psy11350        291 SGRFLGTCCW------DHSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQGDGSVVATGGLDA-----FGRVWDLRTGRCIM  358 (471)
Q Consensus       291 ~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~~~dg-----~i~iwd~~~~~~~~  358 (471)
                      +++.++.|+.      -..+.+||+.+.+-...-... ...-.+++.. ++++++.|+.++     .+.+||+.+.+-..
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            4455556654      145888898876432211111 1111122222 677888887654     58889988764332


Q ss_pred             E--ecccCcCEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCcc
Q psy11350        359 F--LEGHLKSVFSVDFSPDGYHLATGSEDN--------------AVKIWDLRKRR  397 (471)
Q Consensus       359 ~--~~~h~~~v~~~~~sp~~~~l~s~s~dg--------------~i~iwd~~~~~  397 (471)
                      .  +.........+.+  ++++++.|+.++              .+.+||+.+.+
T Consensus       227 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          227 FEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            2  2111112222333  567777777532              37788887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.45  E-value=1.4  Score=47.93  Aligned_cols=233  Identities=12%  Similarity=0.064  Sum_probs=118.6

Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe---ccc--cccccCCCCcceEEEEECCC----
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---DTP--LANLEGHEPFRVSRIKFHPS----  291 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---~~~--~~~~~~~~~~~v~~l~~~~~----  291 (471)
                      ..|++.+......+..+....+..|...+.+.  ..++.++ ++.+.+   ...  ...........|.|+++.|.    
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~  568 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN  568 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence            34666766555556566555444566666553  3455554 333221   110  00011112346999999863    


Q ss_pred             --CCEEEEEec-CCeEEEEECCCCcEEEEeeCC-CCCeEEEEEeC--CCCEEEEEeCCCeEEEEeC--CCCeeEEE---e
Q psy11350        292 --GRFLGTCCW-DHSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQG--DGSVVATGGLDAFGRVWDL--RTGRCIMF---L  360 (471)
Q Consensus       292 --~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~--d~~~l~t~~~dg~i~iwd~--~~~~~~~~---~  360 (471)
                        +.++++|.. |++|+|+++.+.+.+....-. .....++.+..  ...+|..|-.||.+.-+.+  .+|.....   +
T Consensus       569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~  648 (1158)
T 3ei3_A          569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT  648 (1158)
T ss_dssp             TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred             ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence              368999997 999999999987766543321 23445554432  3357888999998755544  45543321   2


Q ss_pred             cccCcCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCccchhe---------ecccC-CC-ccceeeccccceeeeecccC
Q psy11350        361 EGHLKSVFSVDFSPDGY-HLATGSEDNAVKIWDLRKRRLLKW---------CTQLL-PN-SIGVTSLLTDLYIDVLESLN  428 (471)
Q Consensus       361 ~~h~~~v~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~---------~~~~~-~~-~~~~~~~~~d~~~~~~~~~~  428 (471)
                      -| ..++.=..+...|. .++++| +.-..++--+ ++...+         +.... .. +-.++ +..+..+++.....
T Consensus       649 LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~  724 (1158)
T 3ei3_A          649 LG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDE  724 (1158)
T ss_dssp             CC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECC
T ss_pred             cC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEE-EEcCCceEEEEecc
Confidence            22 23444333433333 233333 3333333322 222111         10000 00 11111 11122233222211


Q ss_pred             CCcccccchhhhcccccceeeecccceeeeecCCeEEEeec
Q psy11350        429 PGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLN  469 (471)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~  469 (471)
                               ..+-.++.++.....+.++++|+.+.++++..
T Consensus       725 ---------~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          725 ---------IQKLHIRTVPLYESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             ---------SSSEEEEEEECSSEEEEEEEEGGGTEEEEEEE
T ss_pred             ---------cCCeeEEEEeCCCCceEEEEcCCCCEEEEEEE
Confidence                     11234566777778899999999999988763

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.38  E-value=0.19  Score=45.40  Aligned_cols=181  Identities=10%  Similarity=-0.007  Sum_probs=89.7

Q ss_pred             cCCCEEEEEeCC-----CcEEEEeCCCCc---eEEE--eecCCCCEEEEEEeeCCCCCCccEEEEEeCC-----CcEEEE
Q psy11350        162 PDSQHVATASWS-----GLCKLWTVPECE---LVQT--FRGHDCNVGAIEFHPLPSEGAVCSLASCAQD-----GSVKLW  226 (471)
Q Consensus       162 ~~~~~l~tg~~d-----g~i~iwd~~~~~---~~~~--~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw  226 (471)
                      .++.+++.|+.+     ..+.+||+.+.+   -...  +........++.+  ++.     +++.|+.+     ..+.+|
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~-----lyv~GG~~~~~~~~~~~~~  133 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM-----IYVSGGFDGSRRHTSMERY  133 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE-----EEEECCBCSSCBCCEEEEE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE-----EEEEcccCCCcccceEEEE
Confidence            356777777754     468999988765   3322  1111111112222  333     56666644     358889


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe------EEe------ccccccccCCCCcceEEEEECCCCCE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------WRL------DTPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~------~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      |+.+++-...-.......-.++.. -+++.++.|+.++.      +.+      |.....+... ......+.+  ++..
T Consensus       134 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~i  209 (301)
T 2vpj_A          134 DPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVALL--NDHI  209 (301)
T ss_dssp             ETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEE
T ss_pred             cCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEEE--CCEE
Confidence            987765332221111111112222 26777777765542      111      1111111111 111222222  5667


Q ss_pred             EEEEecC-----CeEEEEECCCCcEEEEeeCC--CCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCe
Q psy11350        295 LGTCCWD-----HSWRLWDLNQGQEVLHQEGH--GKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGR  355 (471)
Q Consensus       295 l~~~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~  355 (471)
                      ++.|+.+     ..+.+||+.+.+-...-...  ......+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            7777664     46899999877533221111  111122222  67788888765     357888887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.25  E-value=0.18  Score=45.93  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             CCCEEEEEec------CCeEEEEECCCCcEEEEee-CCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCeeEE
Q psy11350        291 SGRFLGTCCW------DHSWRLWDLNQGQEVLHQE-GHGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGRCIM  358 (471)
Q Consensus       291 ~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~~~~  358 (471)
                      ++..++.|+.      -..+.+||+.+.+-...-. .....-.+++.. ++++++.|+.+     ..+.+||+.+.+-..
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV  236 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence            4555555543      2358889988764322211 111111122222 66777777653     357789988764222


Q ss_pred             --EecccCcCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCcc
Q psy11350        359 --FLEGHLKSVFSVDFSPDGYHLATGSED--------------NAVKIWDLRKRR  397 (471)
Q Consensus       359 --~~~~h~~~v~~~~~sp~~~~l~s~s~d--------------g~i~iwd~~~~~  397 (471)
                        .+.........+.+  ++++++.|+.+              ..+.+||+.+.+
T Consensus       237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          237 MTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             CCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence              22211111222222  56777777653              357788887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.18  E-value=0.89  Score=42.96  Aligned_cols=216  Identities=8%  Similarity=0.110  Sum_probs=131.5

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP  252 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~  252 (471)
                      ...|.|.|+.++..+..-.-   .--+.-.+|..+     .++.=. ..+++|+|+++.+.++.+....+  |.-=.|-.
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~-----iiALra-g~~lQiFnle~K~klks~~~~e~--VvfWkWis  115 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASK-----VIALKA-GKTLQIFNIEMKSKMKAHTMTDD--VTFWKWIS  115 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSS-----CEEEEE-TTEEEEEETTTTEEEEEEECSSC--CCEEEEEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCc-----EEEEec-CCeEEEEchHHhhhhcceecCCC--ceEEEecC
Confidence            44788999987654432211   112455677776     444443 78999999999998888876663  33334433


Q ss_pred             CCCEEEEEeCCCe--EEec---cccccccCC---CCcceEEEEECCCCCEEEEEec-------CCeEEEEECCCCcEEEE
Q psy11350        253 SGRFLGTCCWDHS--WRLD---TPLANLEGH---EPFRVSRIKFHPSGRFLGTCCW-------DHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       253 ~~~~i~~~~~d~~--~~~~---~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~  317 (471)
                      + +.++..+....  |.+.   .|...+..|   ....|..-..+++.++++..+-       .|.+.+|..+.+ .-..
T Consensus       116 ~-~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~  193 (494)
T 1bpo_A          116 L-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP  193 (494)
T ss_dssp             T-TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEE
T ss_pred             C-CeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccch
Confidence            2 23333333333  4442   222222222   1346788888999998775432       477899998764 4556


Q ss_pred             eeCCCCCeEEEEEeCCC---CEEEEEeC---CCeEEEEeCCCC---e------eEEEec---ccCcCEEEEEEcCCCCEE
Q psy11350        318 QEGHGKPVYCMSFQGDG---SVVATGGL---DAFGRVWDLRTG---R------CIMFLE---GHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d~---~~l~t~~~---dg~i~iwd~~~~---~------~~~~~~---~h~~~v~~~~~sp~~~~l  379 (471)
                      ++||......+.+..+.   .+++.+..   .+.++|.++...   .      .+..+.   ...+-..++..++.-..+
T Consensus       194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi  273 (494)
T 1bpo_A          194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  273 (494)
T ss_dssp             ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred             heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence            77776655444432211   23333332   378999988532   1      111111   123456788888887888


Q ss_pred             EEEeCCCcEEEEECCCccchhe
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      +.-+.-|.|.+||+.++.++..
T Consensus       274 yviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEecCceEEEEecccceeeee
Confidence            8889999999999999998873

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0077  Score=55.52  Aligned_cols=196  Identities=12%  Similarity=0.008  Sum_probs=105.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecC-CCCEEEEEEeeCCCCCCccEEEEE-eCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGH-DCNVGAIEFHPLPSEGAVCSLASC-AQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      .+++.++.||.|.-.|..+|+....+... ..++.... .+....... .++.. +.||.|..++..+|.....+.... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~-   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ-   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHHH-
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeecccc-
Confidence            47889999999999999999999988753 12222211 011000001 23333 579999999987764332221100 


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEE----EEE----CCCCCEEEEEecCCeEEEEECCCCcE
Q psy11350        243 FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSR----IKF----HPSGRFLGTCCWDHSWRLWDLNQGQE  314 (471)
Q Consensus       243 ~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~----l~~----~~~~~~l~~~~~dg~i~iwd~~~~~~  314 (471)
                                                      +..  ..++..    +..    ...+..+++|+.+|.+...|+.+|+.
T Consensus        88 --------------------------------lv~--~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           88 --------------------------------LVS--TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             --------------------------------HHT--TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             --------------------------------cee--ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence                                            000  001110    000    01356788999999999999999999


Q ss_pred             EEEeeCCC--CC-----eEEEEEe-----CCCCEEEEEeCCCeEEEEeCCCCeeEEEe-----cccCcC--EE-EEEEcC
Q psy11350        315 VLHQEGHG--KP-----VYCMSFQ-----GDGSVVATGGLDAFGRVWDLRTGRCIMFL-----EGHLKS--VF-SVDFSP  374 (471)
Q Consensus       315 ~~~~~~~~--~~-----v~~~~~s-----~d~~~l~t~~~dg~i~iwd~~~~~~~~~~-----~~h~~~--v~-~~~~sp  374 (471)
                      +..+....  ..     ..|....     -.+..|+.|..+..+.+.+ ++|+ +..+     ..+...  +. .-..+.
T Consensus       134 ~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~  211 (339)
T 2be1_A          134 ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSK  211 (339)
T ss_dssp             EEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCS
T ss_pred             EEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccccccccccccccc
Confidence            98875321  11     1111111     1235677777777777666 4443 2111     110000  00 000112


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        375 DGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       375 ~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      |+.+ +.++.||.|.-+|..+|+.+.
T Consensus       212 Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          212 DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            4666 457889999999999888763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.09  E-value=0.043  Score=46.69  Aligned_cols=138  Identities=13%  Similarity=0.082  Sum_probs=79.5

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC--------EEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCN--------VGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      ..+..++|+|+|.+.++  .+|.++-.+..++....-+.. ...        -.++.|.|++.      |..+ .||.|.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~------LYav-~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGY------LYAV-SKDKLY  110 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSC------EEEE-ETTEEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCC------EEEe-CCCEEE
Confidence            36779999999987666  588887777655222111111 112        36889999986      4444 679998


Q ss_pred             EEeCCCCccee------eecCCCCcceEEEEECCCCCEEEEEeCCCeEEe-cccc---------ccccC-CCCcceEEEE
Q psy11350        225 LWSLDKDTPLA------NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-DTPL---------ANLEG-HEPFRVSRIK  287 (471)
Q Consensus       225 iwd~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~-~~~~---------~~~~~-~~~~~v~~l~  287 (471)
                      -++-.+.....      .+-...=..+..+.+.|+|.+.++.  ++.+.. ..+.         ....+ ..-.....+.
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~  188 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF  188 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence            88753322111      0101111267999999999999888  665432 2221         11111 1111344566


Q ss_pred             ECCCCCEEEEEecCCeE
Q psy11350        288 FHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       288 ~~~~~~~l~~~~~dg~i  304 (471)
                      |.+++..+++.  +|.+
T Consensus       189 f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          189 FSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             ECTTSCEEEEE--TTEE
T ss_pred             ECCCCcEEEEe--CCeE
Confidence            88888766665  6643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.00  E-value=0.45  Score=51.82  Aligned_cols=235  Identities=13%  Similarity=0.171  Sum_probs=141.7

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC-Ccceeee
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK-DTPLANL  237 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~  237 (471)
                      -.+|..+.||.=. ..++.|+|+.+...+..+.- ..+|.-=.|.....      |+..+ +..|.-|++.. ..+.+.|
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~------l~lVT-~~aVyHW~~~~~s~P~k~f  142 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT------VALVT-DNAVYHWSMEGESQPVKMF  142 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe------eEEEc-CCeEEEeccCCCCccHHHH
Confidence            3577777777655 78999999998877776654 34566666665553      43333 46799999964 3455555


Q ss_pred             cCCC---CcceEEEEECCCCCEEEEEeC---C----CeEEecc----ccccccCCCCcceEEEEEC--C-CCCEEEEEec
Q psy11350        238 EGHE---PFRVSRIKFHPSGRFLGTCCW---D----HSWRLDT----PLANLEGHEPFRVSRIKFH--P-SGRFLGTCCW  300 (471)
Q Consensus       238 ~~~~---~~~v~~~~~s~~~~~i~~~~~---d----~~~~~~~----~~~~~~~~~~~~v~~l~~~--~-~~~~l~~~~~  300 (471)
                      ..|.   ...|.....+++.++++..+-   +    |.+.+.+    ....+.+|.. ....+...  + ....|+.+..
T Consensus       143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~-~F~~~~~~~~~~~~~l~~f~~~  221 (1630)
T 1xi4_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVR  221 (1630)
T ss_pred             hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHh-hhheeccCCCCCCceEEEEEEe
Confidence            5442   346778888999998775543   2    3333322    2233444411 12222221  1 1223333322


Q ss_pred             ---CCeEEEEECCCC---cE------EEEeeCC---CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCc
Q psy11350        301 ---DHSWRLWDLNQG---QE------VLHQEGH---GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       301 ---dg~i~iwd~~~~---~~------~~~~~~~---~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                         .+.++|.++...   .+      +..+.+.   .+-..++..++....+..-+.-|.|.+||+.++.++..-+-...
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~  301 (1630)
T 1xi4_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE  301 (1630)
T ss_pred             cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC
Confidence               368999988543   11      1111111   22234677788777888888999999999999998876555556


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheec
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +|...+-++...-++.....|.|.--.++....+.-+.
T Consensus       302 ~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~  339 (1630)
T 1xi4_A          302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYIT  339 (1630)
T ss_pred             ceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhHh
Confidence            66665555443444555577777777777766665443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.98  E-value=0.42  Score=46.54  Aligned_cols=228  Identities=11%  Similarity=0.104  Sum_probs=131.9

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeecC-------------------------CCCEE--EEEEeeCCCCCCccEEEEEeC
Q psy11350        167 VATASWSGLCKLWTVPECELVQTFRGH-------------------------DCNVG--AIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       167 l~tg~~dg~i~iwd~~~~~~~~~~~~h-------------------------~~~v~--~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      +.+|+..|.|+|+-+++++.+..+...                         .+...  .+++.. +......+++-.-.
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td-g~yDGrylfiNdka  151 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD-GKYDGKYLFINDKA  151 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET-TEEEEEEEEEEETT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC-CeeeeEEEEEecCC
Confidence            668889999999999999888775311                         01111  222221 11111113333445


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEEC--CCCCEEEEEeCCCe--------EEecccc-----ccccCCC-----
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH--PSGRFLGTCCWDHS--------WRLDTPL-----ANLEGHE-----  279 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~i~~~~~d~~--------~~~~~~~-----~~~~~~~-----  279 (471)
                      +..|..-+++..++-..+.......+..+.|-  |+..|++.++....        +.+..+.     ..+....     
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            67788888888888877777776688899886  78888888775432        1000000     0000000     


Q ss_pred             ----CcceEEEEECCCCCEEEEEecCC---------------eEEEEEC-------------------------CC----
Q psy11350        280 ----PFRVSRIKFHPSGRFLGTCCWDH---------------SWRLWDL-------------------------NQ----  311 (471)
Q Consensus       280 ----~~~v~~l~~~~~~~~l~~~~~dg---------------~i~iwd~-------------------------~~----  311 (471)
                          .+....+...+++.+.++.+.+.               .+.++|+                         +.    
T Consensus       232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence                01122334456777777665531               2444443                         22    


Q ss_pred             CcEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC------ee-------EEEecccCcCEEEEEEcCCCC
Q psy11350        312 GQEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTG------RC-------IMFLEGHLKSVFSVDFSPDGY  377 (471)
Q Consensus       312 ~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~------~~-------~~~~~~h~~~v~~~~~sp~~~  377 (471)
                      +..+..+-.-......+.++|||+++++++ .+.++.|+|++.-      +.       ..... -.-.....+|.++|.
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~  390 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGN  390 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSE
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCc
Confidence            111111111112234688999999888766 5788999998741      11       22222 234577889999996


Q ss_pred             EEEEEeCCCcEEEEECCCc
Q psy11350        378 HLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       378 ~l~s~s~dg~i~iwd~~~~  396 (471)
                      ...|.--|..|.-|++...
T Consensus       391 aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          391 AYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEEEETTTTEEEEEEHHHH
T ss_pred             eEeeeeecceEEEEeccHH
Confidence            5556668999999999753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.93  E-value=0.67  Score=39.42  Aligned_cols=167  Identities=13%  Similarity=0.059  Sum_probs=90.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCcc------eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---ccccCCCCcc-
Q psy11350        213 SLASCAQDGSVKLWSLDKDTP------LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANLEGHEPFR-  282 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~~~~~~~~-  282 (471)
                      +|+....| ++..=....+..      ...+-...=..+..++|+|+|.+.++ .....++...+.   ....+. ... 
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s-~t~I   82 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGR-AKKI   82 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHH-CEEE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccc-ccEe
Confidence            46666666 555444433331      11111111126779999999997777 443334443221   000011 112 


Q ss_pred             -------eEEEEECCCCCEEEEEecCCeEEEEECCCCcEE------EEe-eCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Q psy11350        283 -------VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV------LHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRV  348 (471)
Q Consensus       283 -------v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~-~~~~~~v~~~~~s~d~~~l~t~~~dg~i~i  348 (471)
                             ..++.|.|+|.+.++  .||.|+-++-.+...-      ..+ ..-=..+..|.|.|+|.+.++.  |+.++-
T Consensus        83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A           83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence                   378999999988777  5699988876432110      111 1112467899999999887776  777654


Q ss_pred             EeCCCCe------eEEEec-ccCcCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        349 WDLRTGR------CIMFLE-GHLKSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       349 wd~~~~~------~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      +...++.      ....+- ..-..-..+.|.|++.+.++.  +|.+
T Consensus       159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             cCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            4333221      011111 222344557788888776665  6643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.92  E-value=1.1  Score=41.65  Aligned_cols=194  Identities=13%  Similarity=0.038  Sum_probs=104.7

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-ceeeec--CCCCcceEEEEECCC---CCEEEEEeC----C-
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-PLANLE--GHEPFRVSRIKFHPS---GRFLGTCCW----D-  263 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~--~~~~~~v~~~~~s~~---~~~i~~~~~----d-  263 (471)
                      .....++|.|++.      |+.+..+|.|.+++. .+. .+..+.  .........++++|+   +..|+++..    + 
T Consensus        29 ~~P~~ia~~pdG~------l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGGGR------YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEETTE------EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCCCe------EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            4567999999986      666677799999973 444 222221  112236889999998   555544432    1 


Q ss_pred             ----CeEEec--cc------c----ccccCCCCcceEEEEECCCCCEEEEEec-------------CCeEEEEECCCC--
Q psy11350        264 ----HSWRLD--TP------L----ANLEGHEPFRVSRIKFHPSGRFLGTCCW-------------DHSWRLWDLNQG--  312 (471)
Q Consensus       264 ----~~~~~~--~~------~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~iwd~~~~--  312 (471)
                          ..+++.  ..      .    ..+..........|+|.|+|.++++.+.             .|.|..++....  
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence                122221  11      0    0011111112467999999986665432             256666665432  


Q ss_pred             ------cEEEEeeCCCCCeEEEEEeC-CCCEEEEEeCCC---eEEEEeCCC----------------CeeEEEecccCcC
Q psy11350        313 ------QEVLHQEGHGKPVYCMSFQG-DGSVVATGGLDA---FGRVWDLRT----------------GRCIMFLEGHLKS  366 (471)
Q Consensus       313 ------~~~~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg---~i~iwd~~~----------------~~~~~~~~~h~~~  366 (471)
                            .......++.. ...++|+| ++.++++-...+   .|.+...-.                ..++..+......
T Consensus       182 ~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                  11112234443 35799999 676655533222   233322100                0233333112346


Q ss_pred             EEEEEEc-------CCCCEEEEEeCCCcEEEEECCCc
Q psy11350        367 VFSVDFS-------PDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       367 v~~~~~s-------p~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +..++|.       .+|.++++.-..+.|...++...
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            7888884       46777777666778888888753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.87  E-value=1.4  Score=42.51  Aligned_cols=32  Identities=6%  Similarity=-0.005  Sum_probs=22.3

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCC-cEEEEeCCCCc
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDG-SVKLWSLDKDT  232 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~  232 (471)
                      ...+.|+|.|++.      |+.+...+ .|.+++..++.
T Consensus        27 ~~P~~~a~~pdG~------l~V~e~~gg~I~~~~~~~g~   59 (454)
T 1cru_A           27 NKPHALLWGPDNQ------IWLTERATGKILRVNPESGS   59 (454)
T ss_dssp             SSEEEEEECTTSC------EEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEcCCCc------EEEEEcCCCEEEEEECCCCc
Confidence            4567999999997      44455554 68888765443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.82  E-value=1  Score=40.72  Aligned_cols=93  Identities=10%  Similarity=-0.072  Sum_probs=49.8

Q ss_pred             CeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeC-C-----CeEEEEeCCCCeeEE--EecccCcCEEEEEE
Q psy11350        302 HSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGL-D-----AFGRVWDLRTGRCIM--FLEGHLKSVFSVDF  372 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~-d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~  372 (471)
                      ..+.+||..+.+-...-.. ....-.+++. -++++++.|+. +     ..+.+||+.+.+-..  .+......-.++.+
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  195 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH  195 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE
Confidence            3588889887643221111 1111112222 36677777776 2     468999988764322  12111111222233


Q ss_pred             cCCCCEEEEEeCCC-----cEEEEECCCcc
Q psy11350        373 SPDGYHLATGSEDN-----AVKIWDLRKRR  397 (471)
Q Consensus       373 sp~~~~l~s~s~dg-----~i~iwd~~~~~  397 (471)
                        ++++++.|+.++     .+.+||+.+.+
T Consensus       196 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          196 --DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             --TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             --CCEEEEEeccCCCCccceEEEEECCCCe
Confidence              667777877654     48889988764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.81  E-value=0.62  Score=41.90  Aligned_cols=181  Identities=11%  Similarity=0.035  Sum_probs=87.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCC-----cEEEEeCCC
Q psy11350        163 DSQHVATASWS-----GLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDG-----SVKLWSLDK  230 (471)
Q Consensus       163 ~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~  230 (471)
                      ++.+++.|+.+     ..+.+||+.+.+-...-.  .......++.+  ++.     +++.|+.++     .+.+||+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-----iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGL-----LYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-----EEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCE-----EEEEcCCCCCccCceEEEEeCCC
Confidence            66777777754     358899987765333211  11111112222  333     566676553     477888877


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe--------EEe------ccccccccCCCCcceEEEEECCCCCEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--------WRL------DTPLANLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--------~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      ++-...-.......-.+++. -+++.++.|+.++.        +.+      |.....+... ......+.+  ++..++
T Consensus       134 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv  209 (302)
T 2xn4_A          134 NEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGVL--NNLLYA  209 (302)
T ss_dssp             TEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEEEE
T ss_pred             CeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEEE--CCEEEE
Confidence            65333211111111112222 25666666654321        111      1111111111 111222222  567777


Q ss_pred             EEecC-----CeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCe
Q psy11350        297 TCCWD-----HSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLDA-----FGRVWDLRTGR  355 (471)
Q Consensus       297 ~~~~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~dg-----~i~iwd~~~~~  355 (471)
                      .|+.+     ..+.+||+.+.+-...-.. ....-.+++. -++++++.|+.++     .+.+||+.+.+
T Consensus       210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            77764     3689999987653322111 1111112222 2677888887653     47888887764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.79  E-value=1.6  Score=42.62  Aligned_cols=191  Identities=12%  Similarity=0.058  Sum_probs=104.0

Q ss_pred             eCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCc--------------------------ceEEEEEC---CCC
Q psy11350        204 PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF--------------------------RVSRIKFH---PSG  254 (471)
Q Consensus       204 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------------------~v~~~~~s---~~~  254 (471)
                      |.|....+..|.||+..|.|+|+-+.+++.+..+......                          .-..+.+.   -||
T Consensus        63 ~pG~~Deyy~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDG  142 (638)
T 3sbq_A           63 GPGELDDYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDG  142 (638)
T ss_dssp             CTTCCCSEEEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEE
T ss_pred             CCCCcccEEEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeee
Confidence            4455555657899999999999999988877766532211                          11122222   245


Q ss_pred             CEEEEEeCCCe----EEe--ccccccccCCCCcceEEEEEC--CCCCEEEEEec-------CCeE------------EEE
Q psy11350        255 RFLGTCCWDHS----WRL--DTPLANLEGHEPFRVSRIKFH--PSGRFLGTCCW-------DHSW------------RLW  307 (471)
Q Consensus       255 ~~i~~~~~d~~----~~~--~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~~~~-------dg~i------------~iw  307 (471)
                      +++++-.....    +++  ......+.......+.++.|.  |+..|+++++.       ||..            ...
T Consensus       143 rylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i  222 (638)
T 3sbq_A          143 KYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI  222 (638)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred             EEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence            66666554433    222  122223334444567788886  67778877765       2221            112


Q ss_pred             ECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---------------eEEEEeC---------------------
Q psy11350        308 DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA---------------FGRVWDL---------------------  351 (471)
Q Consensus       308 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg---------------~i~iwd~---------------------  351 (471)
                      |..+.+....+.- .+....+...++|.+.++.+.+.               .+.++++                     
T Consensus       223 D~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~  301 (638)
T 3sbq_A          223 DAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP  301 (638)
T ss_dssp             ETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             cCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee
Confidence            3333332222111 12233345567777777765322               2444543                     


Q ss_pred             ----CC----CeeEEEecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q psy11350        352 ----RT----GRCIMFLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDLRK  395 (471)
Q Consensus       352 ----~~----~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~~  395 (471)
                          +.    +..+..+-.-......+..+|||++++.++ .+.++.++|+++
T Consensus       302 ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k  354 (638)
T 3sbq_A          302 VLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK  354 (638)
T ss_dssp             EEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence                22    111111111223456788999999987765 578899999985

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.62  E-value=0.17  Score=47.04  Aligned_cols=57  Identities=11%  Similarity=-0.027  Sum_probs=30.7

Q ss_pred             eEEEEeCCCCe--eEEEecccCcCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCccchheec
Q psy11350        345 FGRVWDLRTGR--CIMFLEGHLKSVFSVDFSPDGYHLATGSEDN------AVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       345 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~  403 (471)
                      .+.+||+.+.+  .+..+......-.++.  .++++++.|+.++      .|.++++++++.+...+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            57889987653  3433332222222333  3678888888653      35666888888766444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.43  E-value=1.5  Score=39.77  Aligned_cols=103  Identities=13%  Similarity=0.087  Sum_probs=54.4

Q ss_pred             CCCEEEEEecC-------CeEEEEECCCCcEEEEeeCCCCCe--EEEEEeCCCCEEEEEeC------CCeEEEEeCCCCe
Q psy11350        291 SGRFLGTCCWD-------HSWRLWDLNQGQEVLHQEGHGKPV--YCMSFQGDGSVVATGGL------DAFGRVWDLRTGR  355 (471)
Q Consensus       291 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~d~~~l~t~~~------dg~i~iwd~~~~~  355 (471)
                      ++..++.|+.+       ..+.+||+.+.+-...- ....+.  .+++. .++++++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            45556666543       34788888876433221 111111  12222 36777777764      2358999998774


Q ss_pred             eEEE--ecccCcCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy11350        356 CIMF--LEGHLKSVFSVDFSPDGYHLATGSED-----NAVKIWDLRKRR  397 (471)
Q Consensus       356 ~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  397 (471)
                      -...  +........++.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            3221  2111111222233  56777777654     347789988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.35  E-value=1.3  Score=45.37  Aligned_cols=106  Identities=10%  Similarity=0.020  Sum_probs=60.6

Q ss_pred             CCCEEEEEecCC--eEEEEECCCCcEEEEee-----CCCCCeEEEEEeCC-CCEEEEEeC--C-----CeEEEEeCCCCe
Q psy11350        291 SGRFLGTCCWDH--SWRLWDLNQGQEVLHQE-----GHGKPVYCMSFQGD-GSVVATGGL--D-----AFGRVWDLRTGR  355 (471)
Q Consensus       291 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~d-~~~l~t~~~--d-----g~i~iwd~~~~~  355 (471)
                      ++..++.|+.++  .+.+||..+.+-...-.     .......++.+..+ +++++.|+.  +     +.+.+||+.+..
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            677777777654  68999998765332211     11122233555655 677777775  2     458899988776


Q ss_pred             e-----EEEecc----cCcCEEEEEEcCCCCEEEEEeC--------CCcEEEEECCCcc
Q psy11350        356 C-----IMFLEG----HLKSVFSVDFSPDGYHLATGSE--------DNAVKIWDLRKRR  397 (471)
Q Consensus       356 ~-----~~~~~~----h~~~v~~~~~sp~~~~l~s~s~--------dg~i~iwd~~~~~  397 (471)
                      -     -..+..    ......++ ...++++++.||.        ...|.+||+.+.+
T Consensus       580 w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             SSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             cccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            1     111111    11112223 3333677777774        3458899988765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.30  E-value=0.52  Score=42.61  Aligned_cols=180  Identities=9%  Similarity=0.010  Sum_probs=87.3

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCceEEEe--ecCCCCEEEEEEeeCCCCCCccEEEEEeCC-----CcEEEE
Q psy11350        163 DSQHVATASW----S-----GLCKLWTVPECELVQTF--RGHDCNVGAIEFHPLPSEGAVCSLASCAQD-----GSVKLW  226 (471)
Q Consensus       163 ~~~~l~tg~~----d-----g~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw  226 (471)
                      ++.+++.|+.    +     ..+.+||+.+.+-...-  .........+.+  ++.     +++.|+.+     ..+.+|
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-----iyv~GG~~~~~~~~~~~~y  142 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGH-----IYAVGGSHGCIHHNSVERY  142 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTE-----EEEECCEETTEECCCEEEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCE-----EEEEcCCCCCcccccEEEE
Confidence            5667777765    2     46889998776533221  111111112222  333     55665543     458889


Q ss_pred             eCCCCcceeeecCCCCc-ceEEEEECCCCCEEEEEeCCCe------EEe------ccccccccCCCCcceEEEEECCCCC
Q psy11350        227 SLDKDTPLANLEGHEPF-RVSRIKFHPSGRFLGTCCWDHS------WRL------DTPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~i~~~~~d~~------~~~------~~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      |+.+++-...-...... ....+.+  ++..++.|+.++.      +.+      |.....+... ......+.+  ++.
T Consensus       143 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~  217 (308)
T 1zgk_A          143 EPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNC  217 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTE
T ss_pred             CCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCE
Confidence            98776533221111111 1122222  6677777765532      111      1111111111 111222333  566


Q ss_pred             EEEEEecC-----CeEEEEECCCCcEEEEeeCCC-CCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCe
Q psy11350        294 FLGTCCWD-----HSWRLWDLNQGQEVLHQEGHG-KPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGR  355 (471)
Q Consensus       294 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~  355 (471)
                      .++.|+.+     ..+.+||+.+.+-...-.... ..-.+++.. ++++++.|+.+     ..+.+||+.+.+
T Consensus       218 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          218 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            77777664     469999998765332211111 111122222 66777887754     357788877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.29  E-value=0.98  Score=49.29  Aligned_cols=217  Identities=8%  Similarity=0.083  Sum_probs=126.0

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP  252 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~  252 (471)
                      ..+|.|.|+.++..+..-.   -.--+.-.+|..+     +++.- ...++.|+|+++.+.++.+....  .|.-=.|-.
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~-----iiALr-ag~~lQiFnl~~k~klks~~~~e--~VvfWkWis  115 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASK-----VIALK-AGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWIS  115 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcc-----eEEEe-cCCeEEEeehHHhhhhcccccCC--CceEEEecC
Confidence            4478899988765442211   1112344677665     34443 47899999999988888777655  344445543


Q ss_pred             CCC-EEEEEeCCCeEEec---cccccccCC---CCcceEEEEECCCCCEEEEEe-------cCCeEEEEECCCCcEEEEe
Q psy11350        253 SGR-FLGTCCWDHSWRLD---TPLANLEGH---EPFRVSRIKFHPSGRFLGTCC-------WDHSWRLWDLNQGQEVLHQ  318 (471)
Q Consensus       253 ~~~-~i~~~~~d~~~~~~---~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~  318 (471)
                      ... -+++...=-.|.+.   .|...+..|   ....|..-..+++.++++..+       -.|.+.+|..+.+ ....+
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~i  194 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI  194 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhh
Confidence            332 33333332336553   233333322   134577778888888877543       3478899998754 33445


Q ss_pred             eCCCCCeEEEEEe--CC-CCEEEEEe---CCCeEEEEeCCCC---eeEE------Eecc---cCcCEEEEEEcCCCCEEE
Q psy11350        319 EGHGKPVYCMSFQ--GD-GSVVATGG---LDAFGRVWDLRTG---RCIM------FLEG---HLKSVFSVDFSPDGYHLA  380 (471)
Q Consensus       319 ~~~~~~v~~~~~s--~d-~~~l~t~~---~dg~i~iwd~~~~---~~~~------~~~~---h~~~v~~~~~sp~~~~l~  380 (471)
                      .||......+...  +. ..+++.+.   ..+.++|.++...   .+..      .+..   ..+-..++..++.-..++
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy  274 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence            6665554443332  11 12222222   1367888887542   1111      1111   123456777787777788


Q ss_pred             EEeCCCcEEEEECCCccchhe
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      .-+.-|.|.++|+.++.++..
T Consensus       275 ~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          275 LITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEecCceEEEEecccchhhhh
Confidence            888999999999999998873

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.96  E-value=1.8  Score=40.01  Aligned_cols=29  Identities=17%  Similarity=0.320  Sum_probs=22.3

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      .....|+|.|++.     .|+.+...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~-----~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNH-----GMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTC-----CEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcCCCC-----EEEEEeCCceEEEEeC
Confidence            3457999999986     2666677899999985

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.86  E-value=2.1  Score=38.56  Aligned_cols=207  Identities=11%  Similarity=0.069  Sum_probs=115.3

Q ss_pred             EecCCCEEEEEe--CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-CC-------------CcE
Q psy11350        160 FSPDSQHVATAS--WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-QD-------------GSV  223 (471)
Q Consensus       160 ~s~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~d-------------g~i  223 (471)
                      |+++|..|+...  .++.|+..+..... ...+...    .+--+++++.     .|+-+. .+             ..|
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~-----~Iyy~~~~~~~~~~~~~~~~n~~~I   90 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKN-----YVYYVRNNNQKITSQTFFSYDRNSL   90 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSS-----EEEEEEECC------CCSSCCSEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCC-----EEEEEECCCCcccccceeccCCCeE
Confidence            456777777664  25667777754333 3334321    2345577777     344443 32             357


Q ss_pred             EEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEe--CCCe---EEe--c-cccccccCCCCcceEEEEECCCCCEE
Q psy11350        224 KLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC--WDHS---WRL--D-TPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~--~d~~---~~~--~-~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +..++..++... +...     ....|++++++|+...  .++.   +++  . .....+..+   .+  ..|+|+++.|
T Consensus        91 y~i~~dg~~~~~-l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~---~~--~~~~~~g~~i  159 (302)
T 3s25_A           91 CRIKRNGHGSTV-LDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH---YL--FTCNTSDRYF  159 (302)
T ss_dssp             EEEETTSCCCEE-EECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS---CC--CCSEEETTEE
T ss_pred             EEEeCCCCcceE-eecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC---Cc--eEeeEECCEE
Confidence            777776554322 2211     1236788999888876  2333   222  1 122223222   12  4567788888


Q ss_pred             EEEec-CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCC--CeEEEEeCCCCeeEEEecccCcCEEEEEE
Q psy11350        296 GTCCW-DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLD--AFGRVWDLRTGRCIMFLEGHLKSVFSVDF  372 (471)
Q Consensus       296 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~  372 (471)
                      +-.+. ...|.+.++..+.....+.   +... ..+.|++.+|+-....  ..|..-++..... ..+..  ..+  ..|
T Consensus       160 y~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~  230 (302)
T 3s25_A          160 YYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHY  230 (302)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEE
T ss_pred             EEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceE
Confidence            76665 5789999987665443333   2222 3466888888766543  3677777765543 33432  233  337


Q ss_pred             cCCCCEEEEEeC--CCcEEEEECCCc
Q psy11350        373 SPDGYHLATGSE--DNAVKIWDLRKR  396 (471)
Q Consensus       373 sp~~~~l~s~s~--dg~i~iwd~~~~  396 (471)
                      +|++..|+-++.  .+.|..-+++-.
T Consensus       231 ~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          231 NVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             EECCCEEEEEECCCCcEEEEEECCCC
Confidence            788888876533  356666676543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.39  E-value=1.4  Score=40.72  Aligned_cols=21  Identities=0%  Similarity=-0.214  Sum_probs=14.6

Q ss_pred             CCCEEEEEeCC-CcEEEEeCCC
Q psy11350        163 DSQHVATASWS-GLCKLWTVPE  183 (471)
Q Consensus       163 ~~~~l~tg~~d-g~i~iwd~~~  183 (471)
                      ++.+++.|+.+ ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~   40 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQA   40 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTS
T ss_pred             CCEEEEEeCcCCCeEEEEcccc
Confidence            66666777643 5788999864

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.10  E-value=6.2  Score=40.69  Aligned_cols=234  Identities=9%  Similarity=-0.027  Sum_probs=133.0

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-------cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-------GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..|.++...++|.+. .|+. +-+.+++..+++......       -....|.++.....+.      |-.|+..| +.+
T Consensus       232 ~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~------lWiGT~~G-l~~  302 (758)
T 3ott_A          232 NSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN------IWLGTDYG-ISL  302 (758)
T ss_dssp             EEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC------EEEEESSS-EEE
T ss_pred             CeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC------EEEEeCCc-ccc
Confidence            347777777776654 4554 458888877655433211       1234588888776665      55666666 555


Q ss_pred             EeCCCCcceeee---c-CCCCcceEEEEECCCCCEEEEEeCCCeEEecccc------cccc------CCCCcceEEEEEC
Q psy11350        226 WSLDKDTPLANL---E-GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL------ANLE------GHEPFRVSRIKFH  289 (471)
Q Consensus       226 wd~~~~~~~~~~---~-~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~------~~~~------~~~~~~v~~l~~~  289 (471)
                      +.....-.....   . ......|.++.-..+|..-+. +.+|...+....      ..+.      ......|.++.-.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  381 (758)
T 3ott_A          303 SRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYED  381 (758)
T ss_dssp             ECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEEC
T ss_pred             cccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEEC
Confidence            443211111110   0 111236888888888776654 456665553221      0011      0112358888888


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCcEEEEee-C-----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----CeeE-
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQEVLHQE-G-----HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-----GRCI-  357 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-----~~~~-  357 (471)
                      ++|+. ..|+ ++-|..||..+++...... .     ....|.++...++|.+ -.|+..+-+.++|..+     .... 
T Consensus       382 ~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~  458 (758)
T 3ott_A          382 KEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL-WISTCLGGIFVVDKHKLMQSTSGQYI  458 (758)
T ss_dssp             TTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE-EEEESSSCEEEEEHHHHHHCCSSEEE
T ss_pred             CCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE-EEEECCCceEEEccccccccCCccee
Confidence            77764 4455 4579999998875433211 1     2345888888777754 4466666688888542     1111 


Q ss_pred             --EEec---c-cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccch
Q psy11350        358 --MFLE---G-HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       358 --~~~~---~-h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                        ..+.   + ....|.++...++|.+.+.++..+-|..+|..+++..
T Consensus       459 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~  506 (758)
T 3ott_A          459 AEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT  506 (758)
T ss_dssp             CSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred             cccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence              1111   1 1235899999989887764444456888998776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.70  E-value=1.1  Score=45.85  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             EEECCC-CCEEEEEec--C-----CeEEEEECCCCcE-----EEEe-e--CCCCCeEEEEEeCCCCEEEEEeCC------
Q psy11350        286 IKFHPS-GRFLGTCCW--D-----HSWRLWDLNQGQE-----VLHQ-E--GHGKPVYCMSFQGDGSVVATGGLD------  343 (471)
Q Consensus       286 l~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~-~--~~~~~v~~~~~s~d~~~l~t~~~d------  343 (471)
                      +.+..+ +..++.|+.  +     +.+.+||+.+.+-     -..+ .  .....-.+++...++.+++.|+.+      
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~  623 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD  623 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence            444443 455556654  2     4588889887661     1111 1  111111123333347788888743      


Q ss_pred             --CeEEEEeCCCCeeE
Q psy11350        344 --AFGRVWDLRTGRCI  357 (471)
Q Consensus       344 --g~i~iwd~~~~~~~  357 (471)
                        ..|.+||+.+.+-.
T Consensus       624 ~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          624 RTNSIISLDPLSETLT  639 (695)
T ss_dssp             TTTSEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCeEE
Confidence              45899999877543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.11  E-value=6.5  Score=37.81  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             CeEEEEEecCCC-EEEEEeCCCcEEEEeCCCC---ceEEEee---------cCCCCEEEEEEeeCCCCCCccEEEEEeC-
Q psy11350        154 PISYCSFSPDSQ-HVATASWSGLCKLWTVPEC---ELVQTFR---------GHDCNVGAIEFHPLPSEGAVCSLASCAQ-  219 (471)
Q Consensus       154 ~V~~~~~s~~~~-~l~tg~~dg~i~iwd~~~~---~~~~~~~---------~h~~~v~~l~~~~~~~~~~~~~l~s~~~-  219 (471)
                      .-+.|+|.|||. .|+++...|.|++++....   ..+..+.         ........|+|+|+-..... +.++-+. 
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~-lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK-LYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE-EEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE-EEEEEeCC
Confidence            456889999996 5666677999999975422   1222221         11456789999996110001 2222221 


Q ss_pred             -C----------CcEEEEeCCCC----------cceeeec-CCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        220 -D----------GSVKLWSLDKD----------TPLANLE-GHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       220 -d----------g~i~iwd~~~~----------~~~~~~~-~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                       +          ..|.-|.+..+          +.+..+. ....-....|.|.|||.++++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          13444555321          1222222 1111246789999999877776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.08  E-value=0.46  Score=43.66  Aligned_cols=113  Identities=10%  Similarity=-0.033  Sum_probs=73.9

Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeCC-CCCeEEEEEe--C-CCCEEEEE-eCCCeEEEEeCCCCeeEEEecc----c
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQEVLHQEGH-GKPVYCMSFQ--G-DGSVVATG-GLDAFGRVWDLRTGRCIMFLEG----H  363 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s--~-d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~----h  363 (471)
                      ..+++++.||.|.-+|..+|+....+... ..++....-.  + ++..++.. +.||.|+.++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46889999999999999999988887654 1232221100  1 23333343 6899999999988855443321    1


Q ss_pred             CcCEEE---EEE-c----CCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        364 LKSVFS---VDF-S----PDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       364 ~~~v~~---~~~-s----p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      ..++..   ... .    ..+..+++|+.+|.+.-.|+++|+.+..+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            122221   000 0    13567899999999999999999999887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.75  E-value=5.9  Score=36.39  Aligned_cols=201  Identities=11%  Similarity=0.068  Sum_probs=104.2

Q ss_pred             eecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce--eeec---CCCCcceEEEEECCC---CCEEEEE-
Q psy11350        190 FRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL--ANLE---GHEPFRVSRIKFHPS---GRFLGTC-  260 (471)
Q Consensus       190 ~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~~v~~~~~s~~---~~~i~~~-  260 (471)
                      +...-...+.|+|.|++.     ++++--..|.|++++...+...  ..+.   .........++++|+   +..|++. 
T Consensus        27 va~gL~~P~~ia~~pdG~-----llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGD-----LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EECCCSSEEEEEECTTSC-----EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eecCCCCceEEEEcCCCc-----EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            333345678999999997     4554444899999986555432  2121   222346889999996   4444433 


Q ss_pred             e--CC-CeEEe--cc------c---cc----cccCCCCcceEEEEECCCCCEEEEEec-------------CCeEEEEEC
Q psy11350        261 C--WD-HSWRL--DT------P---LA----NLEGHEPFRVSRIKFHPSGRFLGTCCW-------------DHSWRLWDL  309 (471)
Q Consensus       261 ~--~d-~~~~~--~~------~---~~----~~~~~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~iwd~  309 (471)
                      +  .+ ..+++  ..      .   ..    .+..........|.|.|+|.++++.+.             .|.|.-++.
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence            2  11 12222  11      0   00    011101113456999999986666442             355665665


Q ss_pred             CCC--------cEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCC------------------eeEEEecc
Q psy11350        310 NQG--------QEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTG------------------RCIMFLEG  362 (471)
Q Consensus       310 ~~~--------~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~------------------~~~~~~~~  362 (471)
                      ...        .......+|.. ...++|+|+|.+.++-. .++.=.|--+..+                  .++..+..
T Consensus       182 dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~  260 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST  260 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred             CCCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence            422        11112234443 35799999887665532 2322222222221                  12333332


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       363 h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +......++|. +|..++..-..+.|....+....
T Consensus       261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~  294 (347)
T 3das_A          261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTA  294 (347)
T ss_dssp             TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTE
T ss_pred             CCCCCcceEEE-cCceeeccccCCEEEEEEecCCc
Confidence            33466778887 45556555555666666665543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=92.57  E-value=10  Score=38.76  Aligned_cols=230  Identities=9%  Similarity=0.021  Sum_probs=119.3

Q ss_pred             EEEE-EecCCCEEEEEe-CC----CcEEEEeCCCCceEE-Eee-cCCC------CEEEEEEeeCCCCCCccEEEEE----
Q psy11350        156 SYCS-FSPDSQHVATAS-WS----GLCKLWTVPECELVQ-TFR-GHDC------NVGAIEFHPLPSEGAVCSLASC----  217 (471)
Q Consensus       156 ~~~~-~s~~~~~l~tg~-~d----g~i~iwd~~~~~~~~-~~~-~h~~------~v~~l~~~~~~~~~~~~~l~s~----  217 (471)
                      ..+. ++|++++++.+- ..    ..++++|+.+++.+. .|. .-+.      ....++|...+.     ++++.    
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~-----~~~~~~~~~  206 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT-----IIFNLVLHK  206 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE-----EEECCCCST
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE-----EEEEeCCCC
Confidence            3444 899999877542 22    379999999987663 122 0000      113458875543     33331    


Q ss_pred             ------eCCCcEEEEeCCCCc--ceeeecCCCCcceEEEEECCCCCE-----EEEEeCCCe----EEe--cc---ccccc
Q psy11350        218 ------AQDGSVKLWSLDKDT--PLANLEGHEPFRVSRIKFHPSGRF-----LGTCCWDHS----WRL--DT---PLANL  275 (471)
Q Consensus       218 ------~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~-----i~~~~~d~~----~~~--~~---~~~~~  275 (471)
                            +....|+.|.+-+..  -...+.........+...++++++     +++.+.+..    +.+  ..   ....+
T Consensus       207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l  286 (711)
T 4hvt_A          207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI  286 (711)
T ss_dssp             TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred             CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence                  122568888876553  223344433323345666777763     333332321    211  11   11122


Q ss_pred             cCCCCcceEEEEECCCCCEEEEE----------ecCCeEEEEECCCCc-------EEEE-ee-CCCCCeEEEEEeCCCCE
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTC----------CWDHSWRLWDLNQGQ-------EVLH-QE-GHGKPVYCMSFQGDGSV  336 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~----------~~dg~i~iwd~~~~~-------~~~~-~~-~~~~~v~~~~~s~d~~~  336 (471)
                      .....  . .+..++.+.+++..          ...+.|.+.|+.++.       .... +. .....+..+.+..+ .+
T Consensus       287 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l  362 (711)
T 4hvt_A          287 NMPSD--A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV  362 (711)
T ss_dssp             CSCTT--C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred             ecCCc--c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence            22211  1 12334455444422          135678899987632       1222 22 23345778888865 57


Q ss_pred             EEEEeCCCe--EEEEeCCCCe-eEEE-ecc-cCcCEEEEEEcCCCC-EEEEEeC---CCcEEEEECC
Q psy11350        337 VATGGLDAF--GRVWDLRTGR-CIMF-LEG-HLKSVFSVDFSPDGY-HLATGSE---DNAVKIWDLR  394 (471)
Q Consensus       337 l~t~~~dg~--i~iwd~~~~~-~~~~-~~~-h~~~v~~~~~sp~~~-~l~s~s~---dg~i~iwd~~  394 (471)
                      +++...++.  +.++|+.++. .... +.. ..+.+..+.+++++. ++++.+.   -+.+..+|+.
T Consensus       363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            777777764  6777876664 2222 221 134576677777654 4555443   3568888876

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.96  E-value=10  Score=35.37  Aligned_cols=214  Identities=13%  Similarity=0.031  Sum_probs=103.6

Q ss_pred             cCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceEEEeec-------------------CCCCEEEEEEeeCCCCCCc
Q psy11350        153 RPISYCSFSPD--SQHVATASWSGLCKLWTVPECELVQTFRG-------------------HDCNVGAIEFHPLPSEGAV  211 (471)
Q Consensus       153 ~~V~~~~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------------------h~~~v~~l~~~~~~~~~~~  211 (471)
                      ..|.++++.|.  ...|.+++..+.|...+ ..++.-..+..                   ....+.+|.+.|....   
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~---  190 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK---  190 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT---
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC---
Confidence            36888999872  45566666566665554 22332222211                   1235788999874322   


Q ss_pred             cEEEEEeCCCcEEEEeCCCCcceeeecCC-C-----------CcceEEEEECCC-CCEEEEEeCCCeEEecc------cc
Q psy11350        212 CSLASCAQDGSVKLWSLDKDTPLANLEGH-E-----------PFRVSRIKFHPS-GRFLGTCCWDHSWRLDT------PL  272 (471)
Q Consensus       212 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-----------~~~v~~~~~s~~-~~~i~~~~~d~~~~~~~------~~  272 (471)
                       .++.+..++.|...+ +.++.-..+... .           ...+.++.+.|. ...+.++...+.++...      ..
T Consensus       191 -~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~  268 (394)
T 3b7f_A          191 -HLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRI  268 (394)
T ss_dssp             -CEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECG
T ss_pred             -EEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceEC
Confidence             255554444444332 223322222110 0           124889999986 35666666655544321      11


Q ss_pred             cc-ccCCCCcceEEEEECC-CCCEEEEEec-----------CCeEEEEECCC-CcEEEEee-CCCC-------CeEEEEE
Q psy11350        273 AN-LEGHEPFRVSRIKFHP-SGRFLGTCCW-----------DHSWRLWDLNQ-GQEVLHQE-GHGK-------PVYCMSF  330 (471)
Q Consensus       273 ~~-~~~~~~~~v~~l~~~~-~~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~-~~~~-------~v~~~~~  330 (471)
                      .. +.......+.++.++| +...|+++..           ++...+|.... ++.-..+. +-..       ....+++
T Consensus       269 ~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~  348 (394)
T 3b7f_A          269 GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTA  348 (394)
T ss_dssp             GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEE
T ss_pred             CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEE
Confidence            11 1110012356788887 3344555432           23344554433 22222221 1110       1135788


Q ss_pred             eCC-CCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEc
Q psy11350        331 QGD-GSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS  373 (471)
Q Consensus       331 s~d-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  373 (471)
                      +|. ...|+.++.++.|..-+ ..++.-..+..+-..+.+++|.
T Consensus       349 ~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          349 DAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             CCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence            873 44566666666655432 3344444444444567777764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.80  E-value=8.8  Score=34.43  Aligned_cols=172  Identities=8%  Similarity=-0.098  Sum_probs=92.4

Q ss_pred             EEEecCCCEEEEEeCC--------------CcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe--CCC
Q psy11350        158 CSFSPDSQHVATASWS--------------GLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA--QDG  221 (471)
Q Consensus       158 ~~~s~~~~~l~tg~~d--------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~--~dg  221 (471)
                      --|+++|.+|+.+...              ..|+..++..++... +..  ..  +..|++.+.     .|+-..  .++
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~-----~Iy~~~~~~~~  127 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGN-----YIYYLHYDTQT  127 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETT-----EEEEEEESSSS
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCC-----EEEEEeecCCC
Confidence            4578999998876543              367777877665333 322  22  336778777     455544  334


Q ss_pred             --cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC-CeEEe-c--cc-cccccCCCCcceEEEEECCCCCE
Q psy11350        222 --SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HSWRL-D--TP-LANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       222 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d-~~~~~-~--~~-~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                        .|..-++.... ...+..+..     ..++++++.|+..+.. ..+.. .  .. ...+...   ... ..++|++.+
T Consensus       128 ~~~Iy~~~~dGs~-~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~  197 (302)
T 3s25_A          128 ATSLYRIRIDGEE-KKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTN  197 (302)
T ss_dssp             CEEEEEEETTSCC-CEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTE
T ss_pred             CceEEEEECCCCC-eEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCE
Confidence              45555554333 333333221     3457788887766652 22222 1  11 1111111   122 345688888


Q ss_pred             EEEEecC--CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCC
Q psy11350        295 LGTCCWD--HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG--LDAFGRVWDLRTG  354 (471)
Q Consensus       295 l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~--~dg~i~iwd~~~~  354 (471)
                      |+-....  ..|..-++..... ..+.  ...+  ..|+|++.+|+-+.  ..+.|..-++.-.
T Consensus       198 iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          198 VYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            8877654  3677777765542 2332  2233  34778888887653  3456777776543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.45  E-value=7  Score=37.57  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=62.2

Q ss_pred             ceEEEEECCCCC-EEEEEecCCeEEEEECCCC---cEEEEee---------CCCCCeEEEEEeCC----CCEEEEEeC--
Q psy11350        282 RVSRIKFHPSGR-FLGTCCWDHSWRLWDLNQG---QEVLHQE---------GHGKPVYCMSFQGD----GSVVATGGL--  342 (471)
Q Consensus       282 ~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~s~d----~~~l~t~~~--  342 (471)
                      ..+.|+|.|++. .|+++...|.|++++....   ..+..+.         .....+..|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            367899999986 5666778899999975422   1222221         11456889999996    444343322  


Q ss_pred             C----------CeEEEEeCCC----------CeeEEEec--ccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        343 D----------AFGRVWDLRT----------GRCIMFLE--GHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       343 d----------g~i~iwd~~~----------~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      +          ..|.-|.+..          .+.+..+.  .....-..|+|.|||.+.++.++.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          1344455532          22333332  1123467899999998877766543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.75  E-value=15  Score=34.11  Aligned_cols=210  Identities=7%  Similarity=-0.031  Sum_probs=113.8

Q ss_pred             CcCeEEEEEecCCCEEE--EEeC-------------CCcEEEEeCCCC--ceEEEeecC------CCCEEEEEEe---eC
Q psy11350        152 TRPISYCSFSPDSQHVA--TASW-------------SGLCKLWTVPEC--ELVQTFRGH------DCNVGAIEFH---PL  205 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~--tg~~-------------dg~i~iwd~~~~--~~~~~~~~h------~~~v~~l~~~---~~  205 (471)
                      =-.|..+...+++++=+  +|-.             .-.|.+||+.+.  +.++.+.-.      .+.+..+.+.   |.
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~  165 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK  165 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence            34677777877665432  2311             125889999999  898887632      3567888888   22


Q ss_pred             CCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEE
Q psy11350        206 PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSR  285 (471)
Q Consensus       206 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~  285 (471)
                      +........++-+..+.|.|+|+.+++.-+.....         |.|+....+.  -+|.      ...+    ...+..
T Consensus       166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~---------~~pd~~~~~~--i~G~------~~~~----~~Gi~g  224 (381)
T 3q6k_A          166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT---------FKAERPTKFD--YGGK------EYEF----KAGIFG  224 (381)
T ss_dssp             TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---------GSCCSCEEEE--ETTE------EEEE----CCCEEE
T ss_pred             CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---------CccccCcceE--ECCE------EeEe----ccCceE
Confidence            11111113445456788999999988765544211         2233100000  0111      0001    235889


Q ss_pred             EEECCC----CCEEEEEecCC-eEEEEE---CCCC---cEEEEe--eCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeC
Q psy11350        286 IKFHPS----GRFLGTCCWDH-SWRLWD---LNQG---QEVLHQ--EGHGKPVYCMSFQ-GDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       286 l~~~~~----~~~l~~~~~dg-~i~iwd---~~~~---~~~~~~--~~~~~~v~~~~~s-~d~~~l~t~~~dg~i~iwd~  351 (471)
                      |+++|+    ++.|+.....+ .+.-..   ++..   ..+..+  .+....-..+++. .+|.++++--..+.|..|+.
T Consensus       225 IaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~  304 (381)
T 3q6k_A          225 ITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNT  304 (381)
T ss_dssp             EEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEET
T ss_pred             EEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeC
Confidence            999997    77777766555 233332   1111   112222  1112334456775 57877777778889999998


Q ss_pred             CC-C---eeEEEec--ccCcCEEEEEEcCCCCEEEEE
Q psy11350        352 RT-G---RCIMFLE--GHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       352 ~~-~---~~~~~~~--~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      .+ .   .....+.  ..-..+..+.+.++|.+.+..
T Consensus       305 ~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          305 QKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             TSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             CCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            75 1   1112221  122346777776666544444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.59  E-value=13  Score=39.37  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=33.2

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        324 PVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46778888888999999999999999999999888753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.71  E-value=25  Score=31.03  Aligned_cols=223  Identities=14%  Similarity=0.012  Sum_probs=104.4

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .|..++.... ..++. . ||.|+.|-....-.+..-......|..|+.....      .++. . ||.|..|-......
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h------s~~l-~-~G~v~~wG~n~~Gq   93 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH------SLAL-K-DGEVIAWGGNEDGQ   93 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE------EEEE-E-TTEEEEEECCTTST
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE------EEEE-E-CCEEEEeeCCCCCC
Confidence            4555554332 22333 4 8888888754321111000112356666654432      2444 4 89999997543222


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc----cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEEC
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA----NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDL  309 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  309 (471)
                      +.. +......|..++.......  .-. ++.+..+-...    .........|..++.....  .+.-. ||.|..|-.
T Consensus        94 lg~-P~~~~~~v~~ia~G~~hs~--al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~  166 (282)
T 3qhy_B           94 TTV-PAEARSGVDAIAAGAWASY--ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGD  166 (282)
T ss_dssp             TCC-CGGGSSSEEEEEEETTEEE--EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEEC
T ss_pred             CCC-CcccCCCeEEEECcCCEEE--EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecC
Confidence            111 1000114544444332222  222 44433321100    0111112347777665433  22334 799999976


Q ss_pred             CCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEE
Q psy11350        310 NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVK  389 (471)
Q Consensus       310 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~  389 (471)
                      .....+..-..-...|..++...+.. ++.  .||.|+.|-......+..-......|..++...+ ..++. . ||.|.
T Consensus       167 n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al-~-~g~v~  240 (282)
T 3qhy_B          167 NYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL-K-NGKVI  240 (282)
T ss_dssp             CTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE-E-TTEEE
T ss_pred             CCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEEE-E-CCEEE
Confidence            54221111111134677777654433 333  5999999976543222111112245777766543 33333 3 99999


Q ss_pred             EEECCCccchh
Q psy11350        390 IWDLRKRRLLK  400 (471)
Q Consensus       390 iwd~~~~~~~~  400 (471)
                      .|-.....++.
T Consensus       241 ~wG~n~~gq~~  251 (282)
T 3qhy_B          241 AWGSSRTAPSS  251 (282)
T ss_dssp             EESTTCCCCGG
T ss_pred             EecCCCCcccc
Confidence            99877655443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=81.61  E-value=29  Score=31.13  Aligned_cols=181  Identities=13%  Similarity=0.010  Sum_probs=107.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCc-------ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEe---cc-----------c
Q psy11350        213 SLASCAQDGSVKLWSLDKDT-------PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL---DT-----------P  271 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~---~~-----------~  271 (471)
                      ++++.+.+|.|+--.+..-.       -+..+....+..+..+........++..+..|.+..   ..           +
T Consensus        10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~   89 (312)
T 1suu_A           10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN   89 (312)
T ss_dssp             EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CB
T ss_pred             EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC
Confidence            68888999999987654221       122222222225555555556667777777776322   10           0


Q ss_pred             c-ccccCCCCcceEEEEECC---CCCEEEEEecCCeEEEEECCCC-------cEEEEeeCCCCCeEEEEEeCCCCEEEEE
Q psy11350        272 L-ANLEGHEPFRVSRIKFHP---SGRFLGTCCWDHSWRLWDLNQG-------QEVLHQEGHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       272 ~-~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~d~~~l~t~  340 (471)
                      . ..+.......|..+...+   +..+|+..+..|.++...+...       .....+.. ...+..+....++..++..
T Consensus        90 i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~  168 (312)
T 1suu_A           90 ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICL  168 (312)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEE
T ss_pred             hhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEE
Confidence            0 011111223455543332   4678889999999999887432       22222333 4566666665556678888


Q ss_pred             eCCCeEEEEeCCC---------CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        341 GLDAFGRVWDLRT---------GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       341 ~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      +.+|.+..+....         |.....+.. ...|.++...+++..+++.+..|..+...+..
T Consensus       169 T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          169 SKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             ETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             eCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            8999988887643         222223332 34566766665667788889999999888753

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.74  E-value=33  Score=31.09  Aligned_cols=165  Identities=12%  Similarity=0.056  Sum_probs=89.0

Q ss_pred             cCeEEE-EEec--CCCEEEEEeCCCcEEEEeCCCCce-------EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        153 RPISYC-SFSP--DSQHVATASWSGLCKLWTVPECEL-------VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       153 ~~V~~~-~~s~--~~~~l~tg~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ..|.++ .+..  +..++++.+.+|.|+.-.+.+...       ...++. ...+..+.......     .++..+..|.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d-----~ill~T~~G~  168 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGD-----DLLLVSANGQ  168 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTC-----EEEEEETTSE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCC-----EEEEEECCCe
Confidence            344444 4442  578999999999999988754321       122333 34454554444333     4777788888


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      +..+.....+ +.... .....+..+                         .+  .....|.++...+++.+++..+..|
T Consensus       169 ~~rf~~~~~e-ip~~g-r~a~Gv~~i-------------------------~L--~~~d~Vv~~~~~~~~~~ll~~T~~G  219 (327)
T 3uc1_A          169 SIRFSATDEA-LRPMG-RATSGVQGM-------------------------RF--NIDDRLLSLNVVREGTYLLVATSGG  219 (327)
T ss_dssp             EEEEECCTTT-SCCCC-TTSBCEESS-------------------------CC--CTTCCEEEEEECCTTCEEEEEETTS
T ss_pred             EEEEECcccc-cCcCC-cCCCCeeee-------------------------cC--CCCCEEEEEEEECCCCEEEEEeCCC
Confidence            8887765201 10000 000011101                         11  1123466666556667889999999


Q ss_pred             eEEEEECCCC-------cEEEEee--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy11350        303 SWRLWDLNQG-------QEVLHQE--GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR  352 (471)
Q Consensus       303 ~i~iwd~~~~-------~~~~~~~--~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~  352 (471)
                      .++.-.+...       +-+..+.  ...+.+..+....+...++..+.+|.+.-++..
T Consensus       220 ~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          220 YAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             cEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            9988876432       1222222  213445555444444566666677777666654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=80.51  E-value=53  Score=33.41  Aligned_cols=190  Identities=10%  Similarity=-0.009  Sum_probs=95.2

Q ss_pred             EEE-EeeCCCCCCccEEEEEeCCC----cEEEEeCCCCcceee-ecCCCCc------ceEEEEECCCCCEEEEEeCC---
Q psy11350        199 AIE-FHPLPSEGAVCSLASCAQDG----SVKLWSLDKDTPLAN-LEGHEPF------RVSRIKFHPSGRFLGTCCWD---  263 (471)
Q Consensus       199 ~l~-~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~-~~~~~~~------~v~~~~~s~~~~~i~~~~~d---  263 (471)
                      .+. ++|++..    ++++-+..|    .++++|+.+++.+.. +......      ....++|. +...++.+...   
T Consensus       133 g~~~~~~~~~~----~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~  207 (711)
T 4hvt_A          133 GVSNCFQNPNR----YLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKN  207 (711)
T ss_dssp             EEEECSSSTTE----EEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTT
T ss_pred             ceeecCCCCCE----EEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCC
Confidence            344 6777763    455544444    599999999876642 2211100      12445776 44444433211   


Q ss_pred             -----C---e---EEeccccc----cccCCCCcceEEEEECCCCCE-----EEEEecC---CeEEEEECCC--CcEEEEe
Q psy11350        264 -----H---S---WRLDTPLA----NLEGHEPFRVSRIKFHPSGRF-----LGTCCWD---HSWRLWDLNQ--GQEVLHQ  318 (471)
Q Consensus       264 -----~---~---~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~-----l~~~~~d---g~i~iwd~~~--~~~~~~~  318 (471)
                           +   .   +++.++..    .+.+.....-.....++++++     +++.+.+   ..+.+.|...  ++. ..+
T Consensus       208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l  286 (711)
T 4hvt_A          208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKI  286 (711)
T ss_dssp             CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EEC
T ss_pred             CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEe
Confidence                 1   1   23333321    233322222334555666663     4433322   4567777653  332 222


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEE----------eCCCeEEEEeCCCCe-------eEEE-ec-ccCcCEEEEEEcCCCCEE
Q psy11350        319 EGHGKPVYCMSFQGDGSVVATG----------GLDAFGRVWDLRTGR-------CIMF-LE-GHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       319 ~~~~~~v~~~~~s~d~~~l~t~----------~~dg~i~iwd~~~~~-------~~~~-~~-~h~~~v~~~~~sp~~~~l  379 (471)
                      ......  .+..+.++.+++..          ...+.|.+.|+.++.       .... +. .....+..+.|..+ .++
T Consensus       287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~  363 (711)
T 4hvt_A          287 NMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF  363 (711)
T ss_dssp             CSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred             ecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence            222221  12334466555532          246678899987631       1222 22 23346788999866 677


Q ss_pred             EEEeCCCc--EEEEECCCcc
Q psy11350        380 ATGSEDNA--VKIWDLRKRR  397 (471)
Q Consensus       380 ~s~s~dg~--i~iwd~~~~~  397 (471)
                      ++...++.  |.++|+.+++
T Consensus       364 ~~~~~~~~~~l~~~~~~~g~  383 (711)
T 4hvt_A          364 LATYDNVVAKVVTFTLENEQ  383 (711)
T ss_dssp             EEEEETTEEEEEEECEETTE
T ss_pred             EEEEECCEEEEEEEECCCCc
Confidence            77777765  6677776664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	471
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-36
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-34
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-28
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-23
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-22
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-20
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-19
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-12
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-17
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-18
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-17
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-16
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-14
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-11
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-05
d2dk4a1	63	a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Hu	1e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	8e-05

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (338), Expect = 1e-36
 Identities = 61/248 (24%), Positives = 97/248 (39%), Gaps = 24/248 (9%)

Query: 145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP 204
             +  G    +S  S  P+  H+ +AS     K+W V     V+TF GH   V  +  + 
Sbjct: 94  IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 153

Query: 205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 264
             +      +ASC+ D +V++W +      A L  H       I + P   +        
Sbjct: 154 DGTL-----IASCSNDQTVRVWVVATKECKAELREHRHVVEC-ISWAPESSYSSISEATG 207

Query: 265 SWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP 324
           S                     K    G FL +   D + ++WD++ G  ++   GH   
Sbjct: 208 S------------------ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE 384
           V  + F   G  + +   D   RVWD +  RC+  L  H   V S+DF     ++ TGS 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 385 DNAVKIWD 392
           D  VK+W+
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (323), Expect = 2e-34
 Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 32/276 (11%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
           G   P++   F P    + +AS     K+W     +  +T +GH  +V  I F       
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLD 269
           A CS     +    + +   +              VS +   P+G  + +   D + ++ 
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMH------GHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 270 TP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP 324
                  +    GH  +     + +  G  + +C  D + R+W +   +       H   
Sbjct: 129 EVQTGYCVKTFTGHREWVRMV-RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 325 VYCMSFQGD--------------------GSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
           V C+S+  +                    G  + +G  D   ++WD+ TG C+M L GH 
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247

Query: 365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
             V  V F   G  + + ++D  +++WD + +R +K
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 5e-25
 Identities = 51/247 (20%), Positives = 84/247 (34%), Gaps = 29/247 (11%)

Query: 177 KLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
           K W +P         GH   V  + FHP+ S      + S ++D ++K+W  +       
Sbjct: 1   KEW-IPRPPEKYALSGHRSPVTRVIFHPVFS-----VMVSASEDATIKVWDYETGDFERT 54

Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH---EPFRVSRIKFHPSGR 293
           L+GH          H                 D                VS +   P+G 
Sbjct: 55  LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114

Query: 294 FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT 353
            + +   D + ++W++  G  V    GH + V  +    DG+++A+   D   RVW + T
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 354 GRCIMFLEGHLKSVFSVDF--------------------SPDGYHLATGSEDNAVKIWDL 393
             C   L  H   V  + +                       G  L +GS D  +K+WD+
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234

Query: 394 RKRRLLK 400
                L 
Sbjct: 235 STGMCLM 241

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  123 bits (309), Expect = 3e-32
 Identities = 57/330 (17%), Positives = 99/330 (30%), Gaps = 52/330 (15%)

Query: 111 KERLAKAKEHLHIPEATRTARNQELQKHLTSLSIYCSQV--GDTRPISYCSFSPDSQHVA 168
           K ++  A++       ++   N +    +  + +   +   G    I    +  DS+ + 
Sbjct: 15  KNQIRDARKACADATLSQITNNID---PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLV 71

Query: 169 TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL 228
           +AS  G   +W       V         V    + P  +  A   L +     ++K    
Sbjct: 72  SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131

Query: 229 D---------------------------------------KDTPLANLEGHEPFRVSRIK 249
           +                                       +              V  + 
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191

Query: 250 FHPSGRFLGTCCWDHSWRL-----DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 304
             P  R   +   D S +L             GHE   ++ I F P+G    T   D + 
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD-INAICFFPNGNAFATGSDDATC 250

Query: 305 RL--WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG 362
           RL     +Q       +     +  +SF   G ++  G  D    VWD         L G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310

Query: 363 HLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           H   V  +  + DG  +ATGS D+ +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.0 bits (232), Expect = 9e-22
 Identities = 51/227 (22%), Positives = 85/227 (37%), Gaps = 13/227 (5%)

Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
              +T RGH   + A+ +           L S +QDG + +W       +  +       
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSR-----LLVSASQDGKLIIWDSYTTNKVHAIPLRS-SW 99

Query: 245 VSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSR-------IKFHPSGRFLGT 297
           V    + PSG ++     D+   +             R                   + T
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159

Query: 298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI 357
              D +  LWD+  GQ+     GH   V  +S   D  +  +G  DA  ++WD+R G C 
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219

Query: 358 MFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ 404
               GH   + ++ F P+G   ATGS+D   +++DLR  + L   + 
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 5e-28
 Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 37/280 (13%)

Query: 146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL 205
            S       I    FSPD + +AT +   L ++W +   ++V   +GH+ ++ ++++ P 
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 206 PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS 265
             +    S     +   ++         + +                 G+++     D +
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV------SPGDGKYIAAGSLDRA 228

Query: 266 WR------------LDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
            R            LD+   +  GH+   V  + F   G+ + +   D S +LW+L    
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

Query: 314 EVLHQEG------------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE 361
                +             H   V  ++   +   + +G  D     WD ++G  ++ L+
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 362 GHLKSVFSVD------FSPDGYHLATGSEDNAVKIWDLRK 395
           GH  SV SV         P+    ATGS D   +IW  +K
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (250), Expect = 7e-24
 Identities = 50/286 (17%), Positives = 88/286 (30%), Gaps = 40/286 (13%)

Query: 152 TRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG------------------H 193
           T  +    FS D +++AT   +   +++ V +  LV                        
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 194 DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPS 253
           D  + ++ F P     A  +     +   ++   +         + +            S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 254 GRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ 313
           G    T            L                   G+++     D + R+WD   G 
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTT--VAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 314 -------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR----------- 355
                  E     GH   VY + F  DG  V +G LD   ++W+L+              
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 356 -CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
            C +   GH   V SV  + +  ++ +GS+D  V  WD +    L 
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 128 RTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELV 187
           + A N+   K   S +   + +G    +   + + + +++ + S       W       +
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 188 QTFRGHDCNVGAIEFHPLPSEGAVCS-LASCAQDGSVKLWSLDK 230
              +GH  +V ++      S G   +  A+ + D   ++W   K
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 23/123 (18%)

Query: 304 WRLWDLNQGQ----EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF 359
           + L++    +    E+     H   V C+ F  DG  +ATG  +   +V+ +  G  +  
Sbjct: 40  YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR 98

Query: 360 LEG------------------HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKW 401
           L                        + SV FSPDG  LATG+ED  ++IWD+  R+++  
Sbjct: 99  LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 158

Query: 402 CTQ 404
              
Sbjct: 159 LQG 161

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (240), Expect = 8e-23
 Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 12/248 (4%)

Query: 157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS 216
                     + + S     K+W+    + ++T  GH   V + +           ++  
Sbjct: 20  ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--------NIII 71

Query: 217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE 276
                        +     +        V  +  H      G+               L 
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131

Query: 277 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSV 336
                  +       GR + +  +D   ++WD      +   +GH   VY + F  DG  
Sbjct: 132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIH 189

Query: 337 VATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR 396
           V +G LD   RVWD+ TG CI  L GH      ++   +   L +G+ D+ VKIWD++  
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTG 247

Query: 397 RLLKWCTQ 404
           + L+    
Sbjct: 248 QCLQTLQG 255

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 4e-21
 Identities = 47/261 (18%), Positives = 86/261 (32%), Gaps = 22/261 (8%)

Query: 145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP 204
            C         +        + V + S     ++W +   + +    GH   V  +++  
Sbjct: 88  ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147

Query: 205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 264
                    + S A D  VK+W  + +T L  L+GH             G  + +   D 
Sbjct: 148 -------RRVVSGAYDFMVKVWDPETETCLHTLQGHTN---RVYSLQFDGIHVVSGSLDT 197

Query: 265 SWRL--DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHG 322
           S R+        +      +            L +   D + ++WD+  GQ +   +G  
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 257

Query: 323 KPV-YCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI-----MFLEGHLKSVFSVDFSPDG 376
           K        Q + + V T   D   ++WDL+TG  I     +   G    V+ +  S   
Sbjct: 258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317

Query: 377 YHLATGSEDNA----VKIWDL 393
              A GS +      + + D 
Sbjct: 318 LVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 5e-21
 Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 179 WTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE 238
           W   E +  +  +GHD +V         +      + S + D ++K+WS      L  L 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGN-----RIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 239 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC 298
           GH    V   +   +    G+               +        +    H   + + + 
Sbjct: 55  GHTG-GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM 358
             D + R+WD+  GQ +    GH   V C+ + G    V +G  D   +VWD  T  C+ 
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLH 171

Query: 359 FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT 403
            L+GH  +        DG H+ +GS D ++++WD+     +   T
Sbjct: 172 TLQGH--TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 214

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-----GHDCNVG 198
           +   Q  +    +      +   V T+S  G  KLW +   E ++        G    V 
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 199 AIEFHPLPSEGAVCSLASC--AQDGSVKLWSLDKD 231
            I          VC++ S    ++  + +   D D
Sbjct: 310 RIRASN---TKLVCAVGSRNGTEETKLLVLDFDVD 341

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (239), Expect = 8e-23
 Identities = 37/288 (12%), Positives = 69/288 (23%), Gaps = 49/288 (17%)

Query: 152 TRPISYCSFSPDSQHVATASWSGLCKLWTV-----PECELVQTFRGHDCNVGAIEFHPLP 206
              +   + S  ++HV T    G  K+W +                 D  + + +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 207 SEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 266
               V   AS      +   +      L +                              
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 267 RLDTPLANLEGHEPF-----------------------------------------RVSR 285
             +  L                                                  ++  
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 286 IKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAF 345
           + + P+G +L       +  +  +N+  +      H   V  + F   G    + G D  
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 346 GRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL 393
              W    G  I        SV S D S D  ++ TGS D    ++++
Sbjct: 289 LNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 287 KFHPS--GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA 344
            FH +  G+         +     + +    ++   HG+ V  ++       V TGG   
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KG 72

Query: 345 FGRVWDLRTGRCI-----MFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLL 399
             +VWD+           +        + S    PDG  L  G E + + IWDL      
Sbjct: 73  CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132

Query: 400 KWC 402
              
Sbjct: 133 IKA 135

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 321 HGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
             KP Y      DG +       DA       R  R I  L  H + V +V  S    H+
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 380 ATGSEDNAVKIWDLRKRRLLKWCTQL 405
            TG     VK+WD+         +QL
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQL 91

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (234), Expect = 2e-22
 Identities = 46/278 (16%), Positives = 91/278 (32%), Gaps = 48/278 (17%)

Query: 159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL------------- 205
               D Q + +       K+W     E  +   GH  +V  +++                
Sbjct: 20  CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79

Query: 206 --------------------PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRV 245
                                       + +C++D S+ +W +   T +         R 
Sbjct: 80  WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139

Query: 246 SRIKFHPSGRFLGTCCWDHSWRL--DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS 303
           +        +++ +   D + ++   +    +      +          R + +   D++
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 199

Query: 304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG--------- 354
            RLWD+  G  +   EGH + V C+ F      + +G  D   +VWDL            
Sbjct: 200 IRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGT 257

Query: 355 RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
            C+  L  H   VF + F  D + + + S D+ + IWD
Sbjct: 258 LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 2e-16
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 4/191 (2%)

Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA 273
           + S  +D ++K+W  +       L GH    V  +++       G+              
Sbjct: 28  IVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYDERVIITGSSDSTVRVWDVNTGE 86

Query: 274 NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK-PVYCMSFQG 332
            L        + +    +   + TC  D S  +WD+    ++  +               
Sbjct: 87  MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 146

Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           D   + +   D   +VW+  T   +  L GH + +           + +GS DN +++WD
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWD 204

Query: 393 LRKRRLLKWCT 403
           +     L+   
Sbjct: 205 IECGACLRVLE 215

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDF 372
           Q +  +    K VYC+ +  D   + +G  D   ++WD  T  C   L GH  SV  + +
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 373 SP 374
             
Sbjct: 64  DE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 41/171 (23%)

Query: 138 HLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNV 197
           + ++     +  G  R I+   +    + V + S     +LW +     ++   GH+  V
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 221

Query: 198 GAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFL 257
             I F           + S A DG +K+W L          G    R             
Sbjct: 222 RCIRFDN-------KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT------------ 262

Query: 258 GTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD 308
                            L  H   RV R++F      + +   D +  +WD
Sbjct: 263 -----------------LVEHS-GRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 4/118 (3%)

Query: 288 FHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGR 347
                + + +   D++ ++WD N  +      GH   V C+ +     +  +        
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80

Query: 348 VWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL 405
             +       +            +           S    + +WD+     +     L
Sbjct: 81  DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS----IAVWDMASPTDITLRRVL 134

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 88.3 bits (217), Expect = 7e-20
 Identities = 30/284 (10%), Positives = 69/284 (24%), Gaps = 44/284 (15%)

Query: 159 SFSPDSQHV-ATASWSGLCKLWTVPECELVQTFR------GHDCNVGAIEFHPLPSEGAV 211
             +PD++      +  G      +  C+                ++ +    P   E   
Sbjct: 46  MMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 105

Query: 212 CSLASCAQD-------GSVKLWSLDKDTPLANLEGHEPFR-VSRIKFHPSGRFLGTCCWD 263
               +   +         ++++S         +      R V  ++    G         
Sbjct: 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI 165

Query: 264 HSWRLDTP--LANLEGHEPFR------------------------VSRIKFHPSGRFLGT 297
           +   + T      L      R                         +  +F    +   T
Sbjct: 166 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225

Query: 298 CCWDHSWRLWDLNQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRC 356
               + +   DL  G+          +  +             G L+     +DL+  + 
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL-AKYDLKQRKL 284

Query: 357 IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           I        + + V F   G  L  G   N + +++      +K
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 32/289 (11%), Positives = 66/289 (22%), Gaps = 52/289 (17%)

Query: 159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASC 217
           +     +++   ++     +  V    + ++         G     P      V      
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV----LN 58

Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPF-----RVSRIKFHPSGRFLGTCCWDHSWRLD--- 269
              G +    LD      +             +      P G+ +           D   
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 270 --------------TPLANLEGHEPFR-VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQE 314
                              +      R V  ++    G         +   +        
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 315 VLHQEG----------------------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR 352
           +  +                                 F+ D    AT  L       DL+
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 353 TGRCIMFLEG-HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           TG+          +  F+   SP   +   G   N +  +DL++R+L+K
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIK 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 6/79 (7%), Positives = 16/79 (20%), Gaps = 2/79 (2%)

Query: 328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFSPDGYHL-ATGSED 385
            + +     +          V D+ +                +   +PD        +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 386 NAVKIWDLRKRRLLKWCTQ 404
             +   DL   +       
Sbjct: 62  GDIYGIDLDTCKNTFHANL 80

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 27/231 (11%), Positives = 51/231 (22%), Gaps = 29/231 (12%)

Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC--------WD-- 263
           +       ++ +  +  DT   +    + F        P  R               D  
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 264 -HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDL------------- 309
                    L+++ G     +      P G+ +                           
Sbjct: 71  TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 310 -NQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF 368
                + +      + VY M    DGS+   G         D++TG+  + L        
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---DIYKMDVKTGKYTVALPLR-NWNR 186

Query: 369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDL 419
               +PD  +                  R            +    L  DL
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSL 415
                 ++   +  N + + D+    + K  + ++P+  G  + 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGTA 45

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 85.6 bits (210), Expect = 6e-19
 Identities = 33/286 (11%), Positives = 65/286 (22%), Gaps = 45/286 (15%)

Query: 159 SFSPDSQHVATASW----------SGLCKLWTVPECELVQTFRGHDCNVGAIEFHP---- 204
             + D   +A AS           +   +++              D     +  +P    
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPF------RVSRIKFHPSGRFLG 258
           L  +G        +   +V +  L+       L+  + +        +       G    
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 259 TCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ 318
                      T        + F ++   +      L    +       DL+ G      
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 232

Query: 319 EGHGKPVYCMS----------------------FQGDGSVVATGGLDAFGRVWDLRTGRC 356
                     +                                     F  V D +TG  
Sbjct: 233 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292

Query: 357 IMFLEGHLKSVFSVDFSPDGYHL--ATGSEDNAVKIWDLRKRRLLK 400
           +   E     + S++ S D   L  A  + D  + I D      L+
Sbjct: 293 LAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.4 bits (155), Expect = 7e-12
 Identities = 20/233 (8%), Positives = 49/233 (21%), Gaps = 29/233 (12%)

Query: 146 CSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL 205
           C  +  T P ++     D      A  +      T  E          +  +    +   
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE----VFHPEDEFLINHPAYSQK 205

Query: 206 PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS 265
                  +       G +            +L   +   +  ++                
Sbjct: 206 AGRLVWPT-----YTGKIHQI---------DLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 266 WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPV 325
            ++         +                           + D   G E L +   G  +
Sbjct: 252 QQVA--------YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGHEI 302

Query: 326 YCMSFQGDGS--VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG 376
             ++   D    + A    D    + D  +G  +  +         +  +  G
Sbjct: 303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 19/215 (8%), Positives = 36/215 (16%), Gaps = 48/215 (22%)

Query: 204 PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD 263
           P      V   A  A      +   +    +  ++G     +        G F+      
Sbjct: 11  PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVADDGSFIAHASTV 67

Query: 264 HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK 323
            S                             +          ++D          E    
Sbjct: 68  FSR----------------------------IARGERTDYVEVFDPVTLLPTADIELPDA 99

Query: 324 PVY---------CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVF------ 368
           P +          ++  G   +           V DL        L+             
Sbjct: 100 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159

Query: 369 -SVDFSPDGYHLATGSE-DNAVKIWDLRKRRLLKW 401
                  DG         +   +I           
Sbjct: 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 12/90 (13%)

Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT----------GSE 384
           +  A         V D   GR I  ++G    + +   + DG  +A           G  
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGER 76

Query: 385 DNAVKIWDLRKRRLLKWCTQLLPNSIGVTS 414
            + V+++D                   V +
Sbjct: 77  TDYVEVFDPVTLLPTADIELPDAPRFLVGT 106

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.7 bits (210), Expect = 9e-19
 Identities = 40/298 (13%), Positives = 84/298 (28%), Gaps = 35/298 (11%)

Query: 154 PISYCSFSPDSQHVATASWSGLCKLWTVP--ECELVQTFRGHDCNVGAIEFHPLPSEGAV 211
           PIS  +++ D   +A    +    ++     +   V   + H+  V  +++ P  +    
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---- 64

Query: 212 CSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-------- 263
             + +C  D +  +W+L   T    L      R +R                        
Sbjct: 65  -RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 264 -HSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ---- 318
                      +++      V  + +HP+   L     D   R++     +         
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 319 --------------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
                               V+ + F  +GS VA    D+   + D      +  L    
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 365 KSVFSVDFSPDGYHLATGSEDNA-VKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYI 421
             + +V F  +   +A G +    +  +D    +L       +P       L      
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.4 bits (186), Expect = 8e-16
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR--CIMFLEGHLKSVFSVDFSPDGYHLA 380
           +P+ C ++  D + +A    +    +++    +   +  L+ H   V  VD++PD   + 
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 381 TGSEDNAVKIWDLRKRRLLKWC 402
           T   D    +W L+ R      
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTL 89

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.9 bits (138), Expect = 9e-10
 Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 6/121 (4%)

Query: 278 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVV 337
            E   +  + F      +     D    L+  +     L   G        S +G  +  
Sbjct: 241 SETLPLLAVTFITESSLV-AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 338 ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG----YHLATGSEDNAVKIWDL 393
               LD                   H  SV  +     G        T   D  + IWD+
Sbjct: 300 RFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 394 R 394
           R
Sbjct: 359 R 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 34/205 (16%), Positives = 54/205 (26%), Gaps = 12/205 (5%)

Query: 120 HLHIPEATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLW 179
             +I E             +    +          +    FS +   VA  S      L 
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

Query: 180 TVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG 239
              +   V T       + A+ F          SL +   D    L++ D      +  G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFIT------ESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282

Query: 240 H--EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRF--- 294
               P + S+       RF        S       A L+      VS+I     G+    
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 295 -LGTCCWDHSWRLWDLNQGQEVLHQ 318
              T   D    +WD+   +  L  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKD 367

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 31/231 (13%), Positives = 60/231 (25%), Gaps = 24/231 (10%)

Query: 145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP 204
              +      +    + P+S  +A  S    C++++    E+ +                
Sbjct: 134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 193

Query: 205 LPS----EGAVCSLASC---------AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFH 251
           +       G V  +            + D +V L   DK   +A     E   +  + F 
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT-LASETLPLLAVTFI 252

Query: 252 PSGRFLGTCCWDH----SWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW 307
                +           ++       +  G         +   + R       D      
Sbjct: 253 TESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER-FQNLDKKASSE 311

Query: 308 DLNQGQEVLHQEGHGKPVYCMSFQGDG----SVVATGGLDAFGRVWDLRTG 354
                   L    H   V  +S    G    S   T G+D    +WD+R+ 
Sbjct: 312 GSAAAGAGL-DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (205), Expect = 3e-18
 Identities = 32/285 (11%), Positives = 64/285 (22%), Gaps = 30/285 (10%)

Query: 155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR---GHDCNVGAIEFHPLPSEGAV 211
           IS     P    +   SW G   ++                +   +    F    ++  +
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQI 72

Query: 212 CSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP 271
                  +   V L        L N E +                               
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 272 LANLEGHEPFRVSRIKFHPS-------GRFLGTCCWDHSWRLWDLNQGQEVL----HQEG 320
              +   +    +  K              L     +   + + L   ++          
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTG---------------RCIMFLEGHLK 365
             +         +    A   +D    V                     R  +       
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSI 410
            V S++FSP    L T   D  +  W+L+ R+ +K   +   +S+
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 30/274 (10%), Positives = 65/274 (23%), Gaps = 26/274 (9%)

Query: 150 GDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSE 208
               P+  C+F  ++   +   +  G      +      Q    ++ N+G         +
Sbjct: 54  RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113

Query: 209 GAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 268
             + +      +        D    + NL  +     ++I    +         ++S   
Sbjct: 114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ 173

Query: 269 DTPLANLE---------GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--- 316
              L   E         G +                     D    +   +   +     
Sbjct: 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 317 ------------HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
                              PV  + F      + T G D     W+L+T + I       
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292

Query: 365 KSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
                V  +     L   + D+  K      + +
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 5e-10
 Identities = 23/235 (9%), Positives = 54/235 (22%), Gaps = 23/235 (9%)

Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
           ++VQ  +     +  I+  P  S      L   + DGS+ ++  D      +L     ++
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKS-----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK 56

Query: 245 --VSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 302
             +    F  +              L   L      +    +                  
Sbjct: 57  HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116

Query: 303 SWRLWDLNQG------------QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWD 350
           +     L +              + L+           +   + S +  G  ++  + + 
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176

Query: 351 LRTGRCI----MFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKW 401
           L                 +         +    A  S D  V +     +     
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 8e-10
 Identities = 6/61 (9%), Positives = 17/61 (27%)

Query: 355 RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTS 414
           + +   +     +  +   P    L   S D ++ ++    +       Q L     +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 415 L 415
            
Sbjct: 62  C 62

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 8/89 (8%), Positives = 24/89 (26%), Gaps = 4/89 (4%)

Query: 318 QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE---GHLKSVFSVDFSP 374
           ++     +  +      S++     D    V+        + L     +   +   +F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 375 D-GYHLATGSEDNAVKIWDLRKRRLLKWC 402
           +    +  G+    +   DL      +  
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQAL 95

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 132 NQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR 191
           N   +       +         P++   FSP  + + TA   G+   W +   + ++ F 
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290

Query: 192 GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP 242
             + +   ++     +      L     D + K  +    T    +E +  
Sbjct: 291 KFNEDS-VVKIACSDN-----ILCLATSDDTFKTNAAIDQT----IELNAS 331

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 83.8 bits (205), Expect = 3e-18
 Identities = 26/273 (9%), Positives = 52/273 (19%), Gaps = 22/273 (8%)

Query: 148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVP-ECELVQTFRGHDCNVGAIEFHPLP 206
           +V +   I Y     D++            L          + F  +  NV A+      
Sbjct: 38  KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG 97

Query: 207 SEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP-------FRVSRIKFHPSGRFLGT 259
               V +         ++                +        F                
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157

Query: 260 CCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG------- 312
               H + ++         E        F    + L    +       D           
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVW-------DLRTGRCIMFLEGHLK 365
            +                         G  D             D    R I+ LE  + 
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRL 398
                       +     E   +  +D++ R++
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 310

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 81.1 bits (198), Expect = 3e-17
 Identities = 19/275 (6%), Positives = 60/275 (21%), Gaps = 31/275 (11%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
            +   +       + +    A+         +   +     R  +  +            
Sbjct: 83  ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142

Query: 210 AVCS-----LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH 264
           A                ++ ++ ++     A    +         F    + L    +  
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSYRS 200

Query: 265 SWRL------------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-----WRLW 307
                            +    +    P   +  K  P         +D +         
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLI-PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI 259

Query: 308 DLNQGQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK 365
           +++ G   +    E               +             +D++T +    +     
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKN 315

Query: 366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           ++  +  S D   +    +D  +  + L K    +
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 17/229 (7%), Positives = 43/229 (18%), Gaps = 29/229 (12%)

Query: 157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS 216
                P               ++ + E   +      + +  A  F          +L  
Sbjct: 142 IAYGFPLKHGETDGYVMQAIHVYDM-EGRKIFAATTENSHDYAPAFDADS-----KNLYY 195

Query: 217 CAQDGSVKLWSL-------DKDTPLANLEGHEPFRVSRIKFHPSGRFL------GTCCWD 263
            +                 +  +    +    P   +  K  P               + 
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI-PGSPNPTKLVPRSMTSEAGEYDLNDMYK 254

Query: 264 HSWRLDTPLANLEGHEP-----FRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ 318
            S  ++    +     P        S         +            +D+   +     
Sbjct: 255 RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---- 310

Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV 367
                 +  +    D   V     D     + L        +E   + +
Sbjct: 311 TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 5/71 (7%)

Query: 333 DGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA--VKI 390
           DG ++A         + D+     +         +  V    D              + I
Sbjct: 14  DGDLIAFVSRGQA-FIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70

Query: 391 WDLRKRRLLKW 401
           +D R  +  K+
Sbjct: 71  YDYRTGKAEKF 81

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 288 FHPS-GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFG 346
           F P  G  +       ++ + D++    +  +      +  +   GD  V    G     
Sbjct: 10  FSPLDGDLIAFVSRGQAF-IQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 347 --RVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH 378
              ++D RTG+   F E +L +VF++    +G  
Sbjct: 67  FLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKF 99

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (200), Expect = 9e-18
 Identities = 50/267 (18%), Positives = 81/267 (30%), Gaps = 27/267 (10%)

Query: 151 DTRPISYCSFSP--DSQHVATASWSGLCKLWTVPECELVQTF--------RGHDCNVGAI 200
            +  ++   FSP   SQ++ +   SG   +W     +   +         +     +  I
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 201 EFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC 260
            +     EG    +    +D      S D    L  + GH     +            T 
Sbjct: 122 SWDF---EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178

Query: 261 CWDHSWRLDTPLANLE--------GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQG 312
             D S                       F         SG F+ T   D     +D   G
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238

Query: 313 QEVLHQEGHGKPVYCMSF---QGDGSVVATGGLDAFGRVWDLRTGRCI--MFLEGHLKSV 367
           + + + E   +PV    F     D    AT G DA  RVWD+ T +C+    L+      
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

Query: 368 FSVDFSPDG-YHLATGSEDNAVKIWDL 393
             V     G   + + S D  +  ++L
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (160), Expect = 1e-12
 Identities = 46/303 (15%), Positives = 83/303 (27%), Gaps = 30/303 (9%)

Query: 139 LTSLSIYCSQVGDTRPISYC-SFSPDSQHVATASW-SGLCKLWTV--PECELVQTFRGHD 194
           ++   I   Q    R  +   S+ P +  +A     S   +       +   V  F GH 
Sbjct: 3   ISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG 62

Query: 195 CN-VGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE-------PFRVS 246
            + V  ++F P+        L S  + G V +W    D    ++E +           +S
Sbjct: 63  SSVVTTVKFSPIKGSQY---LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119

Query: 247 RIKFHPSGRFLGTCCWDHSWRL-------DTPLANLEGHEPFRVSRIKFHPSGRFLGTCC 299
            I +   GR L                     L  + GH     +            T  
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179

Query: 300 WDHSWRLWDLNQGQEVLHQE---GHGKPVYCMSFQGDGSVVATGGLDAFGRVW----DLR 352
            D S   +     +           G  V  + F  D                       
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239

Query: 353 TGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGV 412
             + I   +  ++         D    AT   D  +++WD+   + ++  T L    +G 
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGN 298

Query: 413 TSL 415
             +
Sbjct: 299 QQV 301

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 81.4 bits (199), Expect = 1e-17
 Identities = 24/243 (9%), Positives = 46/243 (18%), Gaps = 16/243 (6%)

Query: 159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA 218
           + SPD + +A        +L               +            +   +  LA   
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEAPRQITMLAWAR 144

Query: 219 QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGH 278
               +     D               V                   +          E  
Sbjct: 145 DGSKLYGLGRDLHVMDP----EAGTLVEDKPIQSWEAETYAQPDVLAVWNQH-----ESS 195

Query: 279 EPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ-EVLHQEGHGKPVYCMSFQGDGSVV 337
                                +       DL  G+  +          +  +     +  
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 338 ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR 397
                      +DL     I  +     S +SV+ S DG  +  G     +  +D     
Sbjct: 256 FGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

Query: 398 LLK 400
              
Sbjct: 313 KKG 315

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 7e-08
 Identities = 30/277 (10%), Positives = 61/277 (22%), Gaps = 45/277 (16%)

Query: 165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK 224
            ++   +      +    +  + +     D     +     P        A+  +  S+ 
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA--YATVNKSESLV 59

Query: 225 LWSLDKDTPLANLEGHEPFRVSR----IKFHPSGRFLGTCCWDHS-------------WR 267
              L     L  ++   P    +        P G+ L                       
Sbjct: 60  KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119

Query: 268 LDTPLANLEGHEPF--RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVL--------- 316
            D    +         +++ + +   G  L     D      +     E           
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 317 ------------HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF-LEGH 363
                       H+          + + D                DL TG   M  +   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 364 LKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
               FS   +P           N ++ +DL K   +K
Sbjct: 240 DVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIK 274

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.9 bits (195), Expect = 3e-17
 Identities = 30/255 (11%), Positives = 70/255 (27%), Gaps = 11/255 (4%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLW--TVPECELVQTFRGHDCNVGAIEFHPLPS 207
             +   +    SP   + A+    G  ++W  T     L  T       V  I +     
Sbjct: 56  EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115

Query: 208 EGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR 267
             A                +   +  L            +                  + 
Sbjct: 116 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175

Query: 268 LDTPLANLEGHEPFR-VSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEV-------LHQE 319
                      E  + V  ++++P G    +   D +  L++   G +        L   
Sbjct: 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 235

Query: 320 GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK-SVFSVDFSPDGYH 378
            H   V+ +++  DG+ +A+   D   ++W++ T +    +    +     +        
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 379 LATGSEDNAVKIWDL 393
           L + S +  +   + 
Sbjct: 296 LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.6 bits (176), Expect = 1e-14
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 21/257 (8%)

Query: 159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA 218
             +P    +   + + +     V      + +  H       +  P     +    AS  
Sbjct: 24  GNTPAGDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTSP-----SGYYCASGD 77

Query: 219 QDGSVKLW--SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------WRLDT 270
             G+V++W  +         +               S R                +   T
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

Query: 271 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSF 330
              NL G      S          + +   D++  +++    +       H K V+ + +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 331 QGDGSVVATGGLDAFGRVWDLRTGRCI-------MFLEGHLKSVFSVDFSPDGYHLATGS 383
             DGS+ A+ G D    +++   G          +    H  SVF + +SPDG  +A+ S
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 384 EDNAVKIWDLRKRRLLK 400
            D  +KIW++   ++ K
Sbjct: 258 ADKTIKIWNVATLKVEK 274

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (131), Expect = 5e-09
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE 384
              +     G  +      +      + +         H         SP GY+ A+G  
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 385 DNAVKIWDLRKRRLLKWC 402
              V+IWD  +   +   
Sbjct: 79  HGNVRIWDTTQTTHILKT 96

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 2/126 (1%)

Query: 145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP 204
             +    T+ +    ++PD    A+    G   L+   +      F        A     
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241

Query: 205 LPSEGAVCS--LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW 262
                +     +AS + D ++K+W++        +         ++    + + L +   
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

Query: 263 DHSWRL 268
           +     
Sbjct: 302 NGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 136 QKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH-D 194
            K           V  +  +   ++SPD   +A+AS     K+W V   ++ +T      
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281

Query: 195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD 229
                +            +L S + +G +   + +
Sbjct: 282 IEDQQLGIIWTKQ-----ALVSISANGFINFVNPE 311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 77.7 bits (189), Expect = 2e-16
 Identities = 36/294 (12%), Positives = 79/294 (26%), Gaps = 56/294 (19%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSE 208
           G  + I+  S S D + + +A   G    W +      + F   H   +  I+       
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS---- 65

Query: 209 GAVCSLASCAQDGSVKLWSLD-KDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWR 267
                L + + D  +K+          +    ++           +   +          
Sbjct: 66  --KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 268 LDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGK---- 323
           + +     E    +  S +      +F+     D    ++ L+       +         
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 324 ------------------------------------------PVYCMSFQGDGSVVATGG 341
                                                      V C+S+  D   +ATG 
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 342 LDAFGRVWDLRTGRC--IMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL 393
           LD    VW++       I+    H  S  +     +   + +  +D+ +K W++
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.2 bits (141), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 313 QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM-FLEGHLKSVFSVD 371
            +V +  GH K +  +S   DG  + +   +     WD+ TG     F + H   +  + 
Sbjct: 5   DQVRY--GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 372 FSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL 405
            +     L T S D+ +K+       +       
Sbjct: 63  TTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVA 95

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 354 GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
           G       GH K++ ++  S DG  L +   +  +  WD+      +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.5 bits (121), Expect = 7e-08
 Identities = 39/278 (14%), Positives = 68/278 (24%), Gaps = 52/278 (18%)

Query: 185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR 244
            + Q   GH+  + A+            +L S   +G +  W +                
Sbjct: 3   SIDQVRYGHNKAITALSSSADGK-----TLFSADAEGHINSWDISTGISNRVFPDVHATM 57

Query: 245 VSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 304
           ++ IK    G        DH   +    + ++  +                       + 
Sbjct: 58  ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 305 RLWDLNQGQEVLHQ-EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH 363
               +                  C++   D   VA GG D+   V+ L            
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 364 LKS----------------------------------------------VFSVDFSPDGY 377
             +                                              V  V +SPD  
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 378 HLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSL 415
            LATGS DN+V +W++ K        +       V S+
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 275

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.0 bits (183), Expect = 2e-15
 Identities = 21/283 (7%), Positives = 54/283 (19%), Gaps = 45/283 (15%)

Query: 160 FSPDSQHVATASW----------SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEG 209
                   A AS           +   +++       +      D    ++         
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV--HII 129

Query: 210 AVCS-----LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVS------RIKFHPSGRFLG 258
             C+     L       +    S+   +     +    F +                   
Sbjct: 130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAA 189

Query: 259 TCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ 318
           +             A   G +       + +  G  +                       
Sbjct: 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI 249

Query: 319 EGHGKPVYCMSFQGDGSVVATGGLDAFG-------------------RVWDLRTGRCIMF 359
           +G+       +F+  G  +     +  G                          G+    
Sbjct: 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309

Query: 360 LEGHLKSVFSVDFSPDGYHL--ATGSEDNAVKIWDLRKRRLLK 400
           +        ++  + DG     A  +    + I+D    +   
Sbjct: 310 ISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 8e-15
 Identities = 33/306 (10%), Positives = 75/306 (24%), Gaps = 58/306 (18%)

Query: 158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS---- 213
              + +   VAT S+SG    + +   +  +       ++   +                
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 214 ------LASCAQDGSVKLWSLDKDTPLANLEGHE-----------------PFRVSRIKF 250
                 L +    G+  +W        +N                          + +  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 251 HPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPS------------------- 291
              G  + T   + + ++         +       +  + +                   
Sbjct: 193 SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251

Query: 292 -GRFLGTCCWDHSWRLW------DLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA 344
              F     ++  +           +  Q  L +  H   V  +SF   G  + + G D 
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311

Query: 345 FGRVWDLRTGRCIMFLEGHLKSV----FSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK 400
             R WD++T   I  L  H   +      +     G  LA     +   +    +  +  
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 371

Query: 401 WCTQLL 406
              + L
Sbjct: 372 DLNESL 377

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.7 bits (171), Expect = 7e-14
 Identities = 28/251 (11%), Positives = 59/251 (23%), Gaps = 67/251 (26%)

Query: 187 VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVS 246
               + HD ++ ++               SC+ DG +K+W           +      V 
Sbjct: 7   ANAGKAHDADIFSVSACNS-------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH 59

Query: 247 RIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL 306
           +   H                          H     +  +       + T  +      
Sbjct: 60  KSGLH--------------------------HVDVLQAIERDAFELCLVATTSFSGDLLF 93

Query: 307 WDLNQGQE----------VLHQEGHGKPVYCMSFQGDG-----SVVATGGLDAFGRVWDL 351
           + + +  E          +L  +      + + +           +    +     +W  
Sbjct: 94  YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153

Query: 352 RTG------------------RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL 393
                                  +       +   SVD S  G  +ATG  +  V+I +L
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISEL 212

Query: 394 RKRRLLKWCTQ 404
              R L     
Sbjct: 213 STLRPLYNFES 223

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 360 LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDL 419
            + H   +FSV          + S D  +K+WD +         +   + +  + L    
Sbjct: 10  GKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 420 YIDVLESLNPGIGNIISSA 438
            +  +E     +  + +++
Sbjct: 68  VLQAIERDAFELCLVATTS 86

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.5 bits (173), Expect = 2e-14
 Identities = 29/285 (10%), Positives = 63/285 (22%), Gaps = 52/285 (18%)

Query: 150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP----- 204
           G  + I+  + +P    + + S+ G    W           + H   + +++        
Sbjct: 11  GHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKAQEYS 61

Query: 205 ----------------------------LPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN 236
                                            AV +              + K   L +
Sbjct: 62  SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121

Query: 237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLG 296
                    + +                   +   L      +P  +S            
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181

Query: 297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQG--------DGSVVATGGLDAFGRV 348
                  + L                                  +  +VATG LD    +
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241

Query: 349 WDLRT-GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD 392
           + ++   + I  L  H   V ++ +      L +   D  +K W+
Sbjct: 242 YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 4e-09
 Identities = 32/280 (11%), Positives = 71/280 (25%), Gaps = 64/280 (22%)

Query: 183 ECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP 242
             E+++T  GH+  + A+  +P         L S + DG +  WS          + H  
Sbjct: 2   HDEVLKTISGHNKGITALTVNP---------LISGSYDGRIMEWSSSS-----MHQDHSN 47

Query: 243 FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN---------------------------- 274
             +  +    +  +      D                                       
Sbjct: 48  -LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106

Query: 275 --------LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVY 326
                            S +    +   +G    +        +       +        
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 327 CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK-----------SVFSVDFSPD 375
            +S     + +A G +     ++DL++                          + +   +
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226

Query: 376 GYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSL 415
              +ATGS D  + I+ +++    K    L  +  GV +L
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNL 264

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.5 bits (173), Expect = 3e-14
 Identities = 27/266 (10%), Positives = 69/266 (25%), Gaps = 19/266 (7%)

Query: 145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP 204
                  T          + +++ T S      +W +P+   V                 
Sbjct: 89  VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148

Query: 205 LPSEGAVCSL----------------ASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRI 248
                                      S + D ++ +W + +   L  L GH   R+   
Sbjct: 149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYST 207

Query: 249 KFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD 308
            +    +   +   D + R+         +     + +                   +  
Sbjct: 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRG 267

Query: 309 LNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI-MFLEGHLKSV 367
            +          H   +  ++       +   G +    +++LR+G+ +   +      +
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 327

Query: 368 FSVDFSPDGYHLATGSEDNAVKIWDL 393
           +SV+F      +A   +D    +  L
Sbjct: 328 WSVNFKGKTL-VAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 39/321 (12%), Positives = 96/321 (29%), Gaps = 68/321 (21%)

Query: 157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP------------ 204
                 +  +V T +   + +++     + +    GHD  V A+++              
Sbjct: 16  ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 75

Query: 205 --------------------------LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE 238
                                     +     +  + + ++D ++ +W L K++ + +  
Sbjct: 76  VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135

Query: 239 GHEPFRVSRIKFHPSGRFLGTCCW--------------------DHSWRLDTPLANLEGH 278
               + +       +  F+G                        D++  +         +
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY 195

Query: 279 E----PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
                  R+    +    +   +   D + R+WDL  G+ +   +GH   V  +      
Sbjct: 196 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 255

Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR 394
            V A       G   +  + +       H        F      L +GS +N   I++LR
Sbjct: 256 LVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 311

Query: 395 KRRLLKWCTQLLPNSIGVTSL 415
             +L+     +L ++  + S+
Sbjct: 312 SGKLVH--ANILKDADQIWSV 330

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 2e-12
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDG 334
           L GH    ++         ++ T   D   R++D    + +L   GH   V+ + +   G
Sbjct: 8   LRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL-ATGSEDNAVKIWDL 393
            +V+             +     +F   +                  TGS DN + +W L
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 394 RKRRLLK 400
            K   + 
Sbjct: 126 PKESSVP 132

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.1 bits (146), Expect = 9e-11
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 319 EGHGKPVY-CMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY 377
            GH   V  C+ F  + + V TG  D   RV+D    + ++ L GH   V+++ ++  G 
Sbjct: 9   RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 378 HLATGSEDNAVKIWDLRKRRLLKWCTQ 404
            L +GS D  V++WD++K         
Sbjct: 67  -LVSGSTDRTVRVWDIKKGCCTHVFEG 92

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 60.3 bits (144), Expect = 1e-10
 Identities = 25/244 (10%), Positives = 49/244 (20%), Gaps = 3/244 (1%)

Query: 159 SFSPDSQHV-ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
             SPD   V    + S    +       ++ T        G                +S 
Sbjct: 38  VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASST 97

Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEG 277
                    ++                    K + +     T    ++           G
Sbjct: 98  LSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157

Query: 278 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVV 337
             P  ++                  S      N   + +  E     +          V 
Sbjct: 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT 217

Query: 338 ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL-ATGSEDNAVKIWDLRKR 396
                     + D  T +    +         +  +PDG  +    S  N V + D    
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

Query: 397 RLLK 400
            +  
Sbjct: 277 TITA 280

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 17/193 (8%), Positives = 44/193 (22%), Gaps = 6/193 (3%)

Query: 216 SCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLDTP 271
           + ++  ++ +  +  +   A +              P G  +                T 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ 331
                         +   P G+ +       S           V      GK    ++  
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIW 391
            DG  +                 + ++      +S   +  +PDG  +   + D+     
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 392 DLRKRRLLKWCTQ 404
                  +    +
Sbjct: 185 IDTVTNSVIDTVK 197

>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: PRP4-like
family: PRP4-like
domain: Pre-mRNA-splicing factor 18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 70  ERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSLAKAKERLAKAKEHLHIPEATR 128
           E       + ++    +V   LR+ GEPI LFGE  +   A +RL K +  +  PE  +
Sbjct: 8   ELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGE--TDYDAFQRLRKIE--ILTPEVNK 62

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 22/143 (15%), Positives = 34/143 (23%), Gaps = 12/143 (8%)

Query: 265 SWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP 324
           SW++     +     P +     +     F  T        L D +   E+      G  
Sbjct: 10  SWKVHVAPEDR----PTQQM-NDWDLENLFSVTLRDAGQIALIDGSTY-EIKTVLDTGYA 63

Query: 325 VYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-----GHLKSVFSVDFSPDG-YH 378
           V+       G  +   G D    + DL         E            S     +  Y 
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 379 LATGSEDNAVKIWDLRKRRLLKW 401
           +A         I D       K 
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKI 146

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 32/257 (12%), Positives = 62/257 (24%), Gaps = 26/257 (10%)

Query: 160 FSPDSQHV-ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS----- 213
              + ++  A A W     +      E  +            E+HP P   A+ +     
Sbjct: 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175

Query: 214 --LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD-----HSW 266
             + +  + G + L        L   E      +       S R+  T            
Sbjct: 176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVID 235

Query: 267 RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWD----LNQGQEVLHQEGHG 322
             +  L  +E     +        +           +  + D    L       H +   
Sbjct: 236 TKEGKLVAIEDT-GGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 294

Query: 323 KPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG 382
           K +      G GS+           ++   T      L    +   SV    D   +   
Sbjct: 295 KILDSFPALGGGSL-FIKTHPNSQYLYVDAT------LNPEAEISGSV-AVFDIKAMTGD 346

Query: 383 SEDNAVKIWDLRKRRLL 399
             D   K   + +   +
Sbjct: 347 GSDPEFKTLPIAEWAGI 363

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 26/258 (10%), Positives = 62/258 (24%), Gaps = 24/258 (9%)

Query: 160 FSPDSQHVATASWSGLCKLWTV--PECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
            S   +++      G   +  +   E   V   +       +IE   +       ++A  
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-IGSEARSIETSKMEGWEDKYAIAGA 127

Query: 218 AQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL-----DTP- 271
                  +   +   P               ++HP  R        +         +T  
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGM-TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186

Query: 272 --LANLEGHEPFRVSRI---------KFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEG 320
             L +       + + I             S R+  T     +  +    +  +++  E 
Sbjct: 187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246

Query: 321 HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLR---TGRCIMFLEGHLKSVFSVDFSPDGY 377
            G          +      G + A   + D      G        +   +     +  G 
Sbjct: 247 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG 306

Query: 378 HLATGSEDNAVKIWDLRK 395
            L   +  N+  ++    
Sbjct: 307 SLFIKTHPNSQYLYVDAT 324

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 23/205 (11%), Positives = 44/205 (21%), Gaps = 25/205 (12%)

Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDTPLANLE 276
            G + L           L+    + V   +   SGR+L     D       L        
Sbjct: 41  AGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 98

Query: 277 -----GHEPFRVSRIK-FHPSGRFL-GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                G E   +   K      ++      W   + + D    +    Q   G       
Sbjct: 99  AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158

Query: 330 FQGDGSV------------VATGGLDAFGRVWDLRTGRCIMFLEGHL-KSVFSVDFSPDG 376
           +  +  V            +          + D      +   E    + +         
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218

Query: 377 YHLATGSEDNAVKIWDLRKRRLLKW 401
            +  T +      +    K   L  
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVA 243

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 39/290 (13%), Positives = 76/290 (26%), Gaps = 50/290 (17%)

Query: 160 FSPDSQHVATASWSGLCKLW--TVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC 217
            S   +++          +      E   V   +       ++E           ++A  
Sbjct: 69  MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGA 127

Query: 218 AQDGSVKLWSLDKDTPLANLEGHEP----------FRVSRI-------KFHPSGRFLGTC 260
                  +   +   P   +                RV+ I       +F  + +  G  
Sbjct: 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 187

Query: 261 CWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGR--FLGTCCWDHSWRLWDLNQGQEVLHQ 318
              +   +D       G  PF ++   +  S R         +    +   ++    L  
Sbjct: 188 LLVNYKDIDNLTVTSIGAAPF-LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246

Query: 319 EG--------------HGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL 364
            G                 PV+  S  GDGS+   G      +       + +  L+G  
Sbjct: 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP---KNHPQYAWKKVAELQGQG 303

Query: 365 KSVFSVDFSPDGYHLA-------TGSEDNAVKIWDLRKRRLLKWCTQLLP 407
                +   P   HL              +V ++DL+    L    Q+LP
Sbjct: 304 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN---LDAKYQVLP 350

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 322 GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLAT 381
              ++ ++ +  G +           + D  + + +  ++    +V     S  G +L  
Sbjct: 30  LPNLFSVTLRDAGQI----------ALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLV 78

Query: 382 GSEDNAVKIWD 392
              D  + + D
Sbjct: 79  IGRDARIDMID 89

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 22/186 (11%), Positives = 47/186 (25%), Gaps = 15/186 (8%)

Query: 220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---WRLDT------ 270
            G + L   D    +  ++      V   +   SGR+L     D       L        
Sbjct: 41  AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98

Query: 271 -PLANLEGHEPFRVSRIKFHPSGRFL-GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCM 328
             +                    R+      W   + + D    +        G  V   
Sbjct: 99  AEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 157

Query: 329 SFQGDGSVVATGGLDAFGRVW-DLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNA 387
           ++  +  V A            +++    ++ +        +V        LA G  D++
Sbjct: 158 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS 217

Query: 388 VKIWDL 393
            + +  
Sbjct: 218 HRYFMT 223

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 16/171 (9%)

Query: 266 WRLDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ-----EVLHQ 318
              D+   +  ++      V   +   SGR+L     D    + DL   +     E+   
Sbjct: 47  VDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 319 EGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY 377
                         +    +A         + D  T      +     +V +  + P+  
Sbjct: 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164

Query: 378 -HLATGSEDNAVKIWDLRKRRLLKW-----CTQLLPNSIGVTSLLTDLYID 422
                 S ++   I ++++   +          L   SIG    L D   D
Sbjct: 165 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD 215

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 22/267 (8%), Positives = 56/267 (20%), Gaps = 28/267 (10%)

Query: 155 ISYCSFSPDSQHV-ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCS 213
           +     SPD +++            + +   +   TF       G++       +G    
Sbjct: 39  VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVF 98

Query: 214 LASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC----CWDHSWRLD 269
           + S            D                      P  R L            + + 
Sbjct: 99  VGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 158

Query: 270 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMS 329
                +        +     P                   +       ++ HG      +
Sbjct: 159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 218

Query: 330 FQGDGSVVATGGLDAFGRV-------------------WDLRTGRCIMFLEGHL---KSV 367
                   +     A   +                   + +     ++  EG        
Sbjct: 219 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP 278

Query: 368 FSVDFSPDGYHL-ATGSEDNAVKIWDL 393
              +    G +L A G + + + ++++
Sbjct: 279 RGFNVDHSGKYLIAAGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 216 SCAQDGSVKLWSLDKDTPLANLEGHE-PFRVSRIKFHPSGRFLGTCCWD----HSWRLDT 270
           +  +   + +W+L+ +  L   +  + P +V  +   P  R+L           ++R+  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 271 ----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD---HSWRLWDLNQGQEVLHQEGHGK 323
                    E   P  ++ I     G+F+    ++    S    +      V+       
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 324 PVYCMSFQ 331
             +  +  
Sbjct: 129 GCHSANIS 136

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 29/253 (11%), Positives = 69/253 (27%), Gaps = 30/253 (11%)

Query: 147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLP 206
           +++    PIS+ +F  + +++  A+                 +F         +     P
Sbjct: 34  TEIPQDEPISWMTFDHERKNIYGAAMKK------------WSSFA-VKSPTEIVHEASHP 80

Query: 207 SEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW 266
             G   +  +     ++ L +       A      P+ V    F+    +        + 
Sbjct: 81  IGGHPRANDADTNTRAIFLLA-------AK---QPPYAVYANPFYKFAGYGNVFSVSETG 130

Query: 267 RLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLWDLNQGQ----EVLHQEG 320
           +L+  + N E  E   +  + F P+  +L +     +  W    L  G+      +    
Sbjct: 131 KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD 190

Query: 321 HGKPVYCMSFQGDGSVV-ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL 379
            G     ++    G+ + A          + +     +     H   +            
Sbjct: 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250

Query: 380 ATGSEDNAVKIWD 392
             G     V    
Sbjct: 251 GKGLYRADVCALT 263

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	471
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.01
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.99
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.88
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.84
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.64
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.98
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.83
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.69
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.67
d2dk4a1	63	Pre-mRNA-splicing factor 18 {Human (Homo sapiens)	97.65
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.48
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.46
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.18
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.96
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.61
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.48
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.46
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.25
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.89
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.74
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.02
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.49
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.45
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.44
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.14
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.16
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.54
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.32
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.19
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.06
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.28

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-39  Score=296.50  Aligned_cols=281  Identities=23%  Similarity=0.414  Sum_probs=249.1

Q ss_pred             cccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        140 TSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       140 ~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      +..+....+.||+++|++++|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|+|++.     ++++++.
T Consensus         5 p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~-----~~~~~~~   79 (317)
T d1vyhc1           5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-----LLASCSA   79 (317)
T ss_dssp             CCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-----EEEEEET
T ss_pred             CCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccc-----ccccccc
Confidence            34455668899999999999999999999999999999999999999999999999999999999998     7999999


Q ss_pred             CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCE
Q psy11350        220 DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       220 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      ++.+.+|+.........+..+.. .+.++.|+|++..+++++.|+.+.++..     ...+..| ...+.+++|+|++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  157 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTL  157 (317)
T ss_dssp             TSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC-CCcceeeecccCCCE
Confidence            99999999988887777777766 8999999999999999999998766432     3345555 557999999999999


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCC--------------------CCEEEEEeCCCeEEEEeCCCC
Q psy11350        295 LGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD--------------------GSVVATGGLDAFGRVWDLRTG  354 (471)
Q Consensus       295 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d--------------------~~~l~t~~~dg~i~iwd~~~~  354 (471)
                      |++++.|+.|++|++.+++....+.+|...+.+++|+|+                    +.++++++.|+.|++||++++
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            999999999999999999999999999999999999875                    347899999999999999999


Q ss_pred             eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccc
Q psy11350        355 RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNI  434 (471)
Q Consensus       355 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  434 (471)
                      +++..+.+|...|.+++|+|++++|++|+.||.|++||+++++++.++..+.                            
T Consensus       238 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~----------------------------  289 (317)
T d1vyhc1         238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE----------------------------  289 (317)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS----------------------------
T ss_pred             cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC----------------------------
Confidence            9999999999999999999999999999999999999999988776554211                            


Q ss_pred             cchhhhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        435 ISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                                     ..+..++|+|+|++||+++.+
T Consensus       290 ---------------~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         290 ---------------HFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             ---------------SCEEEEEECSSSSCEEEEETT
T ss_pred             ---------------CCEEEEEEcCCCCEEEEEeCC
Confidence                           124677899999999988765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-38  Score=294.85  Aligned_cols=241  Identities=19%  Similarity=0.303  Sum_probs=208.4

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-----EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL-----VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      +|..+|+|++|+|+|++||+|+ ||.|+|||+.++..     .....+|...|.+++|+|++.     +|++|+.||.|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-----~l~s~~~dg~i~  122 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLS  122 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-----EEEEEESSSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-----EEEEeecccccc
Confidence            8999999999999999999998 89999999976432     223457899999999999998     799999999999


Q ss_pred             EEeCCCCc--ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEE
Q psy11350        225 LWSLDKDT--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       225 iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      +||+....  ....+..+.. .+..+.|+|++.++++++.++.+.++..     ......| ...+.+++|++++..+++
T Consensus       123 iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            99987544  4455666665 8999999999999999999998666432     2334444 567999999999999999


Q ss_pred             EecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC
Q psy11350        298 CCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY  377 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  377 (471)
                      ++.|+.|++||+++++.+..+. |..+|.+++|+|++.+|++|+.|+.|++||++++... ....|...|++++|+|+++
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCC
Confidence            9999999999999998776664 7889999999999999999999999999999988766 4567999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCccchh
Q psy11350        378 HLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       378 ~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      +|++|+.||.|++||+.+++++.
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~~~~~  301 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEE
Confidence            99999999999999999887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5e-38  Score=292.70  Aligned_cols=257  Identities=18%  Similarity=0.212  Sum_probs=221.9

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .+.+.+.+++++|+|+.|+.++ ++.|.+|++.++.....+.+|...|++++|+|++.     +|++|+.||+|+|||+.
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~-----~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-----YCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEESS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCC-----eEeccccCceEeeeeee
Confidence            3555677889999999999987 77899999999999999999999999999999998     89999999999999998


Q ss_pred             CCcce--eeecCCCCcceEEEEECCCCCEEEEEeCCCe--EEec-----cccccccCCCCcceEEEEECCCCCE-EEEEe
Q psy11350        230 KDTPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLD-----TPLANLEGHEPFRVSRIKFHPSGRF-LGTCC  299 (471)
Q Consensus       230 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~  299 (471)
                      ++...  ..+..|.. .|.+++|+|+++++++++.+..  +.++     .....+.+| ...|.+++|+|++++ |++|+
T Consensus        89 ~~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h-~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          89 QTTHILKTTIPVFSG-PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             STTCCEEEEEECSSS-CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSSSCEEEEEE
T ss_pred             ccccccccccccccC-cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceeeecccc
Confidence            87654  34566665 8999999999999999987543  4332     345566666 557999999999885 78899


Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-------ccCcCEEEEEE
Q psy11350        300 WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-------GHLKSVFSVDF  372 (471)
Q Consensus       300 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~  372 (471)
                      .||.|++||+++++....+..|..+|+++.|+|++++|++++.|+.|++||+.++..+..+.       +|.+.|++++|
T Consensus       167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  246 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  246 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999988777654       58889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceee
Q psy11350        373 SPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTS  414 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  414 (471)
                      +|++++|++|+.||+|+|||++++++++++.........+.+
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~  288 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  288 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEE
Confidence            999999999999999999999999999888765543333333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-37  Score=288.60  Aligned_cols=245  Identities=24%  Similarity=0.316  Sum_probs=213.4

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +....++.||+++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|++.     ++++|+.|+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~-----~l~~~~~d~  119 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN-----YVACGGLDN  119 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS-----EEEEEETTC
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce-----eeeeecccc
Confidence            344567889999999999999999999999999999999999999999999999999999999998     799999999


Q ss_pred             cEEEEeCCCCc----ceeeecCCC----------------------------------------CcceEEEEECCCCCEE
Q psy11350        222 SVKLWSLDKDT----PLANLEGHE----------------------------------------PFRVSRIKFHPSGRFL  257 (471)
Q Consensus       222 ~i~iwd~~~~~----~~~~~~~~~----------------------------------------~~~v~~~~~s~~~~~i  257 (471)
                      .+.+|+.....    ....+..+.                                        ...+....+.+.+.++
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            99999975432    111122111                                        1146777888899999


Q ss_pred             EEEeCCCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eCCCCCeEEEEE
Q psy11350        258 GTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSF  330 (471)
Q Consensus       258 ~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~  330 (471)
                      ++++.|+.+.++..     ...+.+| ...|++++|+|++++|++++.||.|++||+.....+..+  ..+..+|.+++|
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h-~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEE
Confidence            99999999776532     3445666 568999999999999999999999999999998877665  456678999999


Q ss_pred             eCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        331 QGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       331 s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      +|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++.+|+||+.||+|+|||
T Consensus       279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-36  Score=290.12  Aligned_cols=250  Identities=24%  Similarity=0.417  Sum_probs=210.6

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee------------------cCCCCEEEEEEeeCCCCC
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR------------------GHDCNVGAIEFHPLPSEG  209 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------------------~h~~~v~~l~~~~~~~~~  209 (471)
                      ..+|++.|+|++|+|||++||+|+ |+.|+|||+.+++.+..+.                  .|...|.+++|+|++.  
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--  134 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--  134 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS--
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC--
Confidence            347999999999999999999997 9999999999988877654                  3567799999999988  


Q ss_pred             CccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---c-ccCCCCcceEE
Q psy11350        210 AVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---N-LEGHEPFRVSR  285 (471)
Q Consensus       210 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---~-~~~~~~~~v~~  285 (471)
                         +|++|+.||.|++||...++.+..+.+|.. .|.++.+++++..+++++.++.+.++....   . ...+ .....+
T Consensus       135 ---~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~  209 (388)
T d1erja_         135 ---FLATGAEDRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTT  209 (388)
T ss_dssp             ---EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEE
T ss_pred             ---cceecccccccccccccccccccccccccc-cccccccccccccccccccceeeeeeecccccccccccc-cccccc
Confidence               899999999999999999999999888877 899999999999999999999977653321   1 1122 223445


Q ss_pred             EEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEe-------eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe--
Q psy11350        286 IKFH-PSGRFLGTCCWDHSWRLWDLNQGQEVLHQ-------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR--  355 (471)
Q Consensus       286 l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~--  355 (471)
                      +.++ +++++|++++.||.|++||+.++..+..+       .+|..+|++++|+|++.+|++|+.||.|++||++++.  
T Consensus       210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  289 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK  289 (388)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred             ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence            5555 48899999999999999999998776654       4688999999999999999999999999999997653  


Q ss_pred             ----------eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        356 ----------CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       356 ----------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                                +......|...|.+++|+|++++|++|+.||.|++||+++++++.++..+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             cccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence                      34455678899999999999999999999999999999999998877643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-36  Score=282.26  Aligned_cols=244  Identities=15%  Similarity=0.238  Sum_probs=208.6

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE--EEeecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELV--QTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      ......+.+|+..|++++|+|+|++||+|+.||.|+|||+.++...  ..+..|..+|.+++|+|++.     +|++++.
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-----~l~~~~~  122 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK-----RIAAVGE  122 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC-----EEEEEEC
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc-----ccccccc
Confidence            3444556799999999999999999999999999999999887643  56788999999999999988     6888875


Q ss_pred             --CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCE-EEEEeCCCeEEeccc-----cccccCCCCcceEEEEECCC
Q psy11350        220 --DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLDTP-----LANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       220 --dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-i~~~~~d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~  291 (471)
                        +..++||++++++....+..|.. .|.+++|+|++.+ +++|+.|+.+.++..     ...+..| ...|+++.|+|+
T Consensus       123 ~~~~~~~v~~~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p~  200 (311)
T d1nr0a1         123 GRERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPD  200 (311)
T ss_dssp             CSSCSEEEEETTTCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccc-ccccccccccceeeecccccccccccccccccccccccccc-cccccccccCcc
Confidence              46699999999999999888876 8999999999985 788999998777432     3334455 568999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEEe-------eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEVLHQ-------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                      +++|++++.|+.|++||+.++..+..+       .+|...|++++|+|++++|++|+.||.|+|||+++++++.++..|.
T Consensus       201 ~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~  280 (311)
T d1nr0a1         201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  280 (311)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence            999999999999999999998877665       3588999999999999999999999999999999999999887664


Q ss_pred             c---CEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        365 K---SVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       365 ~---~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      .   .+.++.|  ++.+|++++.||.|++||.+
T Consensus       281 ~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         281 RIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             CccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            3   4555555  45679999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-36  Score=278.71  Aligned_cols=251  Identities=16%  Similarity=0.180  Sum_probs=205.7

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      +...+.||.++|++++|+|+|++|++|+.||+|++||+.+++....+. .|...|++++|+|++.      +++++.|+.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~------~~~~~~d~~   77 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD------LFTVSWDDH   77 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC------EEEEETTTE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce------eecccceee
Confidence            345778999999999999999999999999999999999999988875 7899999999999986      778889999


Q ss_pred             EEEEeCCCCcce--eeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec
Q psy11350        223 VKLWSLDKDTPL--ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW  300 (471)
Q Consensus       223 i~iwd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  300 (471)
                      +++|+.......  ..........+.+++|+|++.++++++.+ .+.++.............+.+++|+|++++|++++.
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS-EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            999998654321  11111223378899999999988877665 444433322222222346889999999999999999


Q ss_pred             CCeEEEEECCCCcEEE-EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeE---EEecccCcCEEEEEEcCCC
Q psy11350        301 DHSWRLWDLNQGQEVL-HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCI---MFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~sp~~  376 (471)
                      ||.|++||+++++... ....|..+|++++|+|++.+|++++.|+.|++||+.++..+   ..+.+|...|++++|+|++
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998876543 34578999999999999999999999999999999887554   3456789999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccchhe
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      .+|++|+.||.|++||++++.....
T Consensus       237 ~~l~sgs~dg~i~iwd~~~~~~~~~  261 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNKPSDHPI  261 (299)
T ss_dssp             SEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             cceEEEcCCCEEEEEECCCCCcceE
Confidence            9999999999999999998765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-36  Score=286.42  Aligned_cols=238  Identities=15%  Similarity=0.204  Sum_probs=202.7

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeC
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE--LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSL  228 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  228 (471)
                      +..||+|++|+|||++||+|+.||.|+|||+.+++  .+..+++|.++|.+++|+|++.     +|++|+.|++|+|||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~-----~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-----RIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-----EEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC-----EEEEEECCCeEEEEee
Confidence            35789999999999999999999999999997765  6677899999999999999988     8999999999999999


Q ss_pred             CCCcceee--ecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---------cccccCCCCcceEEEEECCCCCEEEE
Q psy11350        229 DKDTPLAN--LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---------LANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       229 ~~~~~~~~--~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---------~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                      .++.....  +..+.. .|.++.|+|+++++++++.++.+.++..         ......| ...|.+++|+|++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccc-cccccccccccccceeecccCcceeeeeeccccccccccccccc-ccccccccccccccceec
Confidence            87764433  444444 8999999999999999999998665321         1112233 567999999999999999


Q ss_pred             EecCCeEEEEECCCC------------------cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Q psy11350        298 CCWDHSWRLWDLNQG------------------QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~  359 (471)
                      |+.|++|++||+...                  ..+....+|...|++++|+|++++|++++.|+.|++||+.++.++..
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~  238 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  238 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee
Confidence            999999999998643                  34566678999999999999999999999999999999999999999


Q ss_pred             ecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        360 LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       360 ~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      +..|..+|.+++|+|++++|++| .|+.+++|.....
T Consensus       239 ~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         239 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             eecccccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            99999999999999999887765 5777777665543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-35  Score=277.04  Aligned_cols=258  Identities=18%  Similarity=0.256  Sum_probs=219.1

Q ss_pred             hhhhhHHHHhhcc-ccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceEEEeecCCCCEEEEEEee
Q psy11350        128 RTARNQELQKHLT-SLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE--CELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       128 ~~~~~~~~~~~~~-~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      +.++.|++..... .........+|..+|.+++|+|++++|++|+.||.|++||+..  ++....+..|...+.+++|+|
T Consensus        72 g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  151 (337)
T d1gxra_          72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP  151 (337)
T ss_dssp             SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred             CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccc
Confidence            3445555443221 1222334568999999999999999999999999999999874  456677889999999999999


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc---ccccCCCCc
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL---ANLEGHEPF  281 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~---~~~~~~~~~  281 (471)
                      ++.     ++++++.|+.|++|++.++++......+.. .+.+++|++++..+++++.|+.+.++...   .........
T Consensus       152 ~~~-----~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~  225 (337)
T d1gxra_         152 DSK-----VCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS  225 (337)
T ss_dssp             TSS-----EEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             ccc-----cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccceeeccccccc
Confidence            987     799999999999999999988888887776 89999999999999999999997765321   111112255


Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE  361 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~  361 (471)
                      .|.+++|+|++++|++++.|+.|++||+++++.. ....|...|++++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc
Confidence            7999999999999999999999999999988754 566799999999999999999999999999999999999987765


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        362 GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       362 ~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                       |...|.+++|+|++++|++|+.||+|+|||+
T Consensus       305 -~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence             7899999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-34  Score=272.72  Aligned_cols=240  Identities=23%  Similarity=0.403  Sum_probs=204.9

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEe
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWS  227 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  227 (471)
                      ..+|...|++++|+|+|++|++|+.||.|++|+..+++.+..+.+|...|.++.|++++.     .+++++.++.+++||
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~~~~~~~~~~i~~~d  191 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-----KLVSGSGDRTVRIWD  191 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccc-----cccccccceeeeeee
Confidence            347899999999999999999999999999999999999999999999999999999987     799999999999999


Q ss_pred             CCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc------------ccccCCCCcceEEEEECCCCCEE
Q psy11350        228 LDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL------------ANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~------------~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      ..+.........+.. .+....+.+++.+|++++.|+.+.++...            ....+| ...|.+++|+|++++|
T Consensus       192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l  269 (388)
T d1erja_         192 LRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQSV  269 (388)
T ss_dssp             TTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC-CCCEEEEEECCCCCEE
Confidence            998877777666553 44444455688999999999987664321            112234 5579999999999999


Q ss_pred             EEEecCCeEEEEECCCCc------------EEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc
Q psy11350        296 GTCCWDHSWRLWDLNQGQ------------EVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH  363 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h  363 (471)
                      ++++.||.|++||+.++.            .......|...|.+++|+|++++|++|+.||.|++||+++++++.++.+|
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence            999999999999997653            23445678999999999999999999999999999999999999999999


Q ss_pred             CcCEEEEEE------cCCCCEEEEEeCCCcEEEEECC
Q psy11350        364 LKSVFSVDF------SPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       364 ~~~v~~~~~------sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      .+.|+++++      +|++.+|+||+.||+|+||+++
T Consensus       350 ~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999975      5689999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-33  Score=260.00  Aligned_cols=278  Identities=17%  Similarity=0.245  Sum_probs=219.5

Q ss_pred             ceeeeeecCCcCe-EEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        143 SIYCSQVGDTRPI-SYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       143 ~~~~~~~gh~~~V-~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      |...+++||...| +|+  ++++++||+|+.||+|+|||+.+++++.++.+|.++|.+++|+|++      +|++|+.||
T Consensus         3 p~~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~------~l~s~s~D~   74 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG------ILVSGSTDR   74 (355)
T ss_dssp             CEEEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT------EEEEEETTC
T ss_pred             CCcEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC------EEEEEeccc
Confidence            4567899999886 555  4568999999999999999999999999999999999999999864      699999999


Q ss_pred             cEEEEeCCCCcceeeecCCCC-cceEEEEECCCCCEEEEEeCCCeEEecccccccc----------------CC-CCc--
Q psy11350        222 SVKLWSLDKDTPLANLEGHEP-FRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLE----------------GH-EPF--  281 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~----------------~~-~~~--  281 (471)
                      +|++|++.............. .......+.+++.++++++.|+.+.++.......                .. ...  
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999999988877766554432 3456677889999999999999977643211000                00 000  


Q ss_pred             ------ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe
Q psy11350        282 ------RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR  355 (471)
Q Consensus       282 ------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~  355 (471)
                            ......+.+++++++++..|+.|++||+.+++.+....++...+.++.|+|++.++++++.|+.|++||++++.
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence                  11123455678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCC-------CccceeeccccceeeeecccC
Q psy11350        356 CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLP-------NSIGVTSLLTDLYIDVLESLN  428 (471)
Q Consensus       356 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~  428 (471)
                      ++..+.+|...|.+++|+  +++|++|+.||.|++||++++...........       ....+++...|..+.+|+...
T Consensus       235 ~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         235 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTT
T ss_pred             cccccccccccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCC
Confidence            999999999999999996  46999999999999999998765433221111       111223334566777777654


Q ss_pred             CC
Q psy11350        429 PG  430 (471)
Q Consensus       429 ~~  430 (471)
                      ..
T Consensus       313 g~  314 (355)
T d1nexb2         313 GK  314 (355)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-33  Score=258.36  Aligned_cols=256  Identities=26%  Similarity=0.445  Sum_probs=228.2

Q ss_pred             chhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeC
Q psy11350        126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL  205 (471)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~  205 (471)
                      .++.++.|++..    ......+.+|..+|.+++|+|++.++++++.++.+.+|+....+....+.+|...+.++.|+|+
T Consensus        37 ~Dg~i~iWd~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          37 EDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  112 (317)
T ss_dssp             SSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             CCCeEEEEECCC----CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCC
Confidence            445556665432    3345567899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCCC
Q psy11350        206 PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHEP  280 (471)
Q Consensus       206 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~~  280 (471)
                      +.     .+++++.|+.+++||+.+++.+..+..+.. .+.+++|+|++.++++++.|+.+.++..     ...+..+ .
T Consensus       113 ~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-~  185 (317)
T d1vyhc1         113 GD-----HIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-R  185 (317)
T ss_dssp             SS-----EEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-S
T ss_pred             Cc-----eEEeeccCcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC-C
Confidence            98     799999999999999999999999988876 8999999999999999999999776432     2334444 4


Q ss_pred             cceEEEEECCCC--------------------CEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE
Q psy11350        281 FRVSRIKFHPSG--------------------RFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       281 ~~v~~l~~~~~~--------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~  340 (471)
                      ..+.++.|+|++                    .++++++.|+.|++||+++++++..+.+|..+|.+++|+|++++|++|
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            568888887753                    468999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        341 GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       341 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                      +.||.|+|||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       266 ~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-32  Score=255.07  Aligned_cols=237  Identities=24%  Similarity=0.315  Sum_probs=201.6

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  264 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~  264 (471)
                      +..+++++|.++|++++|+|++.     +|++|+.||+|+|||+.+++.+..+..|.. .|.+++|+|++.++++++.|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~-----~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSR-----LLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS-----EEEEEETTTEEEEEETTTTEEEEEEECSCS-CEEEEEECTTSSEEEEEETTC
T ss_pred             eeeEEECCCCCCEEEEEECCCCC-----EEEEEECCCceeeeecccceeEEEEecccc-cEEeeEeeccceeeeeecccc
Confidence            45678999999999999999998     899999999999999999999999988876 899999999999999999998


Q ss_pred             eEEeccc---------cccccCC----------------------------------------CCcceEEEEECCCCCEE
Q psy11350        265 SWRLDTP---------LANLEGH----------------------------------------EPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       265 ~~~~~~~---------~~~~~~~----------------------------------------~~~~v~~l~~~~~~~~l  295 (471)
                      .+.++..         ...+.+|                                        ....+....+.+.+.++
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            8544211         0001111                                        12246778888899999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec--ccCcCEEEEEEc
Q psy11350        296 GTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFS  373 (471)
Q Consensus       296 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s  373 (471)
                      ++++.|+.|++||+++++++..+.+|..+|++++|+|++.+|++|+.||.|++||++....+..+.  .|...|.+++|+
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999998876653  566789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeeccc
Q psy11350        374 PDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQ  453 (471)
Q Consensus       374 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (471)
                      |++++|++|+.||.|++||+.+++++..+..+                                           ...+.
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-------------------------------------------~~~V~  316 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-------------------------------------------DNRVS  316 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCC-------------------------------------------SSCEE
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcEEEEEcCC-------------------------------------------CCCEE
Confidence            99999999999999999999998877654321                                           11245


Q ss_pred             ceeeeecCCeEEEeecC
Q psy11350        454 KLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       454 ~l~fs~dg~~lA~~~~~  470 (471)
                      .|+|+|||++||+++.+
T Consensus       317 ~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         317 CLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             EEEECTTSSCEEEEETT
T ss_pred             EEEEeCCCCEEEEEccC
Confidence            77899999999988765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-32  Score=262.49  Aligned_cols=247  Identities=16%  Similarity=0.229  Sum_probs=198.4

Q ss_pred             ceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCC
Q psy11350        143 SIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD  220 (471)
Q Consensus       143 ~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  220 (471)
                      .....+.||.++|.+++|+|++++|++|+.|+.|+|||+.++..  ...+.+|...|.+++|+|++.     .|++++.|
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-----~l~~~s~d  116 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-----KFAVGSGS  116 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-----EEEEEETT
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccc-----cceeeccc
Confidence            34566789999999999999999999999999999999987654  445568899999999999988     79999999


Q ss_pred             CcEEEEeCCCCccee---eecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc-----------------------cc
Q psy11350        221 GSVKLWSLDKDTPLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL-----------------------AN  274 (471)
Q Consensus       221 g~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~-----------------------~~  274 (471)
                      ++|++|++.......   .........|.+++|+|++.+|++++.|+.++++...                       ..
T Consensus       117 ~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (371)
T d1k8kc_         117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE  196 (371)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred             CcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeee
Confidence            999999987665432   2222223489999999999999999999997764321                       11


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-
Q psy11350        275 LEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-  353 (471)
Q Consensus       275 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-  353 (471)
                      ...| ...|.+++|+|++++|++++.|++|++||+.+++.+..+..|..+|.+++|+|++.+|++| .|+.+++|.... 
T Consensus       197 ~~~~-~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         197 SSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             CCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             ccCc-cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            2233 4569999999999999999999999999999999999999999999999999999887765 477666654332 


Q ss_pred             -CeeEEE---------------------------------------ecccCcCEEEEEEcCCC----CEEEEEeCCCcEE
Q psy11350        354 -GRCIMF---------------------------------------LEGHLKSVFSVDFSPDG----YHLATGSEDNAVK  389 (471)
Q Consensus       354 -~~~~~~---------------------------------------~~~h~~~v~~~~~sp~~----~~l~s~s~dg~i~  389 (471)
                       +.....                                       ...|.+.|+++++.|.+    ..|+|+|.||.|+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~  354 (371)
T d1k8kc_         275 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS  354 (371)
T ss_dssp             TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred             CceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEE
Confidence             211100                                       01388899999998743    4689999999999


Q ss_pred             EEECCCc
Q psy11350        390 IWDLRKR  396 (471)
Q Consensus       390 iwd~~~~  396 (471)
                      |||+++.
T Consensus       355 iW~~~~~  361 (371)
T d1k8kc_         355 IWDVRSL  361 (371)
T ss_dssp             EEEHHHH
T ss_pred             EEeCCcC
Confidence            9998653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-31  Score=247.29  Aligned_cols=306  Identities=20%  Similarity=0.252  Sum_probs=227.8

Q ss_pred             cceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        142 LSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       142 ~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      +.....+.||+++|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+|+       +|++|+.|+
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-------~l~s~s~D~   77 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-------IIISGSTDR   77 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-------EEEEEETTS
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-------ccccceecc
Confidence            4455678899999876 47778999999999999999999999999999999999999999874       699999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc-----cccCCCCcceEEEEECCCCCEEE
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA-----NLEGHEPFRVSRIKFHPSGRFLG  296 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~l~  296 (471)
                      .+++|+............... .+....  .....+..+..|+.+.++....     .+...   ......+.+....++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  151 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTS-TVRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHVLMGH---VAAVRCVQYDGRRVV  151 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSS-CEEEEE--EETTEEEEEETTSEEEEEESSSCCEEEEEECC---SSCEEEEEECSSCEE
T ss_pred             cccccccccccceecccccce-eEeeee--cccccccccccceeEEEeecccccceeeeecc---cccceeeccccceee
Confidence            999999987766655554443 344333  3446777788888765533211     11111   122234445667899


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        297 TCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       297 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      +++.|+.|++||....+.+..+.+|...+..+.+  ++.+|++|+.||.|++||++.++++..+.+|...+.++++++  
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--  227 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--  227 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--
T ss_pred             eecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--
Confidence            9999999999999999999999999887766554  788999999999999999999999999999999999988864  


Q ss_pred             CEEEEEeCCCcEEEEECCCccchheecccCCCcc----------ceeeccccceeeeecccCCCcccccchhhhcccccc
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSI----------GVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPI  446 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (471)
                      ++|++|+.||.|++||+...+....+........          .+++.+.|+.+.+|+.........+....     .-
T Consensus       228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~-----~~  302 (342)
T d2ovrb2         228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-----SG  302 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECT-----TG
T ss_pred             CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEeccc-----CC
Confidence            6999999999999999999888776655444333          33344445555555544332211110000     00


Q ss_pred             eeeecccceeeeecCCeEEEeecC
Q psy11350        447 PLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       447 ~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                      .....+..++|+|+|.+||+.+.+
T Consensus       303 ~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         303 GSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSS
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCC
Confidence            112247789999999999987654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=251.39  Aligned_cols=243  Identities=21%  Similarity=0.221  Sum_probs=196.9

Q ss_pred             ceeeeeecC-CcCeEEEEEec--CCCEEEEEeCCCcEEEEeCCCCce--------EEEeecCCCCEEEEEEeeCCCCCCc
Q psy11350        143 SIYCSQVGD-TRPISYCSFSP--DSQHVATASWSGLCKLWTVPECEL--------VQTFRGHDCNVGAIEFHPLPSEGAV  211 (471)
Q Consensus       143 ~~~~~~~gh-~~~V~~~~~s~--~~~~l~tg~~dg~i~iwd~~~~~~--------~~~~~~h~~~v~~l~~~~~~~~~~~  211 (471)
                      .....+.|| ...|++++|+|  ++.+||+|+.||+|+|||+..++.        ...+..|.++|.+++|++++.    
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~----  128 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR----  128 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS----
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC----
Confidence            344556677 46899999998  568999999999999999865432        234567899999999999988    


Q ss_pred             cEEEEEe--CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCE-EEEEeCCCeEEecccc--------ccccCCCC
Q psy11350        212 CSLASCA--QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRF-LGTCCWDHSWRLDTPL--------ANLEGHEP  280 (471)
Q Consensus       212 ~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-i~~~~~d~~~~~~~~~--------~~~~~~~~  280 (471)
                       .+++++  .++.+.+|+.++++.+..+..|.. .|.+++|+|++.+ +++++.|+.+.++...        .....+ .
T Consensus       129 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-~  205 (325)
T d1pgua1         129 -RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-G  205 (325)
T ss_dssp             -EEEEEECCSSCSEEEEETTTCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-T
T ss_pred             -ccceeeccccceEEEEeecccccceeeeeccc-ccccccccccccceEEEeecccccccccccccccceecccccCC-C
Confidence             566655  467899999999999999988876 8999999999876 6778899997765321        112233 4


Q ss_pred             cceEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEe---CCCCEEEEEeCCCeEEEEeCCCCee
Q psy11350        281 FRVSRIKFHPS-GRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ---GDGSVVATGGLDAFGRVWDLRTGRC  356 (471)
Q Consensus       281 ~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~t~~~dg~i~iwd~~~~~~  356 (471)
                      ..|.+++|+|+ +.+|++++.||.|++||+++++.+..+.+|..++.++.|+   |+|++|++++.|+.|+|||++++++
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence            57999999996 6789999999999999999999999999988887666665   6899999999999999999999999


Q ss_pred             EEEecccCcC--EE--EEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        357 IMFLEGHLKS--VF--SVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       357 ~~~~~~h~~~--v~--~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +..+..|...  +.  ++.|.++ .+|++|+.||+|++||+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         286 VQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            9887765543  33  4444433 57899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=257.47  Aligned_cols=258  Identities=12%  Similarity=0.142  Sum_probs=194.3

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc------eEEEeecCCCCEEEEEEe---eCCCCCCccEEE
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECE------LVQTFRGHDCNVGAIEFH---PLPSEGAVCSLA  215 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~---~~~~~~~~~~l~  215 (471)
                      ....+||...|.++++++  ++|++|+.|++|+|||..+.+      .......|...+..+...   +... ....+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA-FELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT-EEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCC-CCCcEEE
Confidence            345679999999999865  799999999999999976543      223334555555444332   2211 1122678


Q ss_pred             EEeCCCcEEEEeCCCCcceeeec-----C----CCCcceEEEEECCC-----CCEEEEEeCCCeEEecccc---------
Q psy11350        216 SCAQDGSVKLWSLDKDTPLANLE-----G----HEPFRVSRIKFHPS-----GRFLGTCCWDHSWRLDTPL---------  272 (471)
Q Consensus       216 s~~~dg~i~iwd~~~~~~~~~~~-----~----~~~~~v~~~~~s~~-----~~~i~~~~~d~~~~~~~~~---------  272 (471)
                      +++.||.|++|++........+.     .    .....+..++|.++     +.++++++.|+.+.++...         
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            99999999999976443222111     0    11225677788765     4688999999986553210         


Q ss_pred             -------------ccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe------eCCCCCeEEEEEeCC
Q psy11350        273 -------------ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ------EGHGKPVYCMSFQGD  333 (471)
Q Consensus       273 -------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~s~d  333 (471)
                                   ..........+.+++|+|++ +|++|+.||+|++||+.+++++..+      .+|..+|++++|+||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                         00011113357899999987 8999999999999999999877654      468999999999999


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCeeEEEec-------------ccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy11350        334 GSVVATGGLDA---FGRVWDLRTGRCIMFLE-------------GHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       334 ~~~l~t~~~dg---~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      |++|++|+.|+   .|++||+.+++++..+.             +|.+.|++++|+|++++|+|||.|++|+|||+++++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999999887   49999999998887764             799999999999999999999999999999999999


Q ss_pred             chheecccC
Q psy11350        398 LLKWCTQLL  406 (471)
Q Consensus       398 ~~~~~~~~~  406 (471)
                      ++.++..+.
T Consensus       323 ~~~~l~gH~  331 (393)
T d1sq9a_         323 RITTLNMHC  331 (393)
T ss_dssp             EEEEEECCG
T ss_pred             EEEEECCcC
Confidence            999887543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-31  Score=245.33  Aligned_cols=275  Identities=14%  Similarity=0.073  Sum_probs=209.6

Q ss_pred             eeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEE---EeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        145 YCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQ---TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       145 ~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      ...+.+|+..|++|+|+|++++||+|+.||+|+|||+.++....   ...+|..+|.+++|+|++..    +|++|+.||
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~----~l~sg~~d~   79 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL----QIYVGTVQG   79 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE----EEEEEETTS
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC----EEEEccccc
Confidence            34567999999999999999999999999999999997654332   33369999999999998653    799999999


Q ss_pred             cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc---------cccCC-CCcceEEEEECCC
Q psy11350        222 SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA---------NLEGH-EPFRVSRIKFHPS  291 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~---------~~~~~-~~~~v~~l~~~~~  291 (471)
                      .|++|++..+........+.........+.++...+++++.++.+.++....         ....+ .......+.+.+.
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            9999999988887777766665667777888999999999999977753211         11111 1223456677888


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEE---EEeeCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCeeE---------E
Q psy11350        292 GRFLGTCCWDHSWRLWDLNQGQEV---LHQEGHGKPVYCMSFQG-DGSVVATGGLDAFGRVWDLRTGRCI---------M  358 (471)
Q Consensus       292 ~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~-d~~~l~t~~~dg~i~iwd~~~~~~~---------~  358 (471)
                      +..+++++.|+.|++||+...+..   .....+...+.+..+.+ ++..+++++.||.+.+|++......         .
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            899999999999999999876532   23344555666666655 7789999999999999987643211         1


Q ss_pred             ------EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeec
Q psy11350        359 ------FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       359 ------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  425 (471)
                            ...+|...|++++|+|++.+|+||+.||.|++||+++++.+..+....+  ..++++..+....+..
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~--~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLA  310 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--SEEEEEEECSSEEEEE
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC--CEEEEEEeCCCEEEEE
Confidence                  1235667899999999999999999999999999999998887654433  3345555555544443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-31  Score=247.47  Aligned_cols=247  Identities=20%  Similarity=0.251  Sum_probs=194.6

Q ss_pred             CeEEEEEecCCCEEEEEeCCC-cEEEEeCCCC--ceEEEeecCC-CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCC
Q psy11350        154 PISYCSFSPDSQHVATASWSG-LCKLWTVPEC--ELVQTFRGHD-CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLD  229 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg-~i~iwd~~~~--~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  229 (471)
                      .+++++|+|+|+.|+.++.+. .|+.|+....  ..+..+.+|. ..|++++|+|....   .+|++|+.||+|+|||+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g---~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS---QYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC---CEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCC---CEEEEEeCCCCEEEeeec
Confidence            467889999999999887443 3566765433  4466777874 67999999985321   179999999999999987


Q ss_pred             CCcceeee--------cCCCCcceEEEEECCCCCEEEEEeCCC--eEEe-----ccccccccCCCCcceEEEEECCCCCE
Q psy11350        230 KDTPLANL--------EGHEPFRVSRIKFHPSGRFLGTCCWDH--SWRL-----DTPLANLEGHEPFRVSRIKFHPSGRF  294 (471)
Q Consensus       230 ~~~~~~~~--------~~~~~~~v~~~~~s~~~~~i~~~~~d~--~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~  294 (471)
                      .+.....+        ..+.. +|.+++|+++++++++++.+.  ...+     ......+.+| ...|.+++|+|++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAG-PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-SQRINACHLKQSRPM  173 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-SSCEEEEEECSSSSC
T ss_pred             CCcceeeeecccccccccccC-cEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec-ccccccccccccccc
Confidence            65543322        23333 799999999999999887653  2222     1334455666 568999999998875


Q ss_pred             -EEEEecCCeEEEEECCCCcEEEEe---eCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEE
Q psy11350        295 -LGTCCWDHSWRLWDLNQGQEVLHQ---EGHGKPVYCMSFQGD-GSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFS  369 (471)
Q Consensus       295 -l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~d-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  369 (471)
                       +++++.|+.|++||+...+.....   ..|...|++++|+|+ +.+|++++.|+.|++||+++++++..+.+|..++.+
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  253 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence             678999999999999888766554   456788999999996 689999999999999999999999999998887766


Q ss_pred             EEEc---CCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        370 VDFS---PDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       370 ~~~s---p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +.|+   |+|++|++++.|+.|+|||++++++++.+...
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            6555   68999999999999999999999998876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.5e-31  Score=240.24  Aligned_cols=234  Identities=16%  Similarity=0.203  Sum_probs=184.1

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcE
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSV  223 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  223 (471)
                      +..++.||..+|++++|+|    |++|+.||+|++||+.++     ..+|...|.++.+++...      +++++.|++|
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~------~~s~s~D~~v   69 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQE------YSSISWDDTL   69 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTC------CEEEETTTEE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCe------EEEEeecccc
Confidence            4557889999999999987    999999999999998764     358999999999987654      8899999999


Q ss_pred             EEEeCCCCcc-----------------------eeeecCCCCc-------ceEEEEECCCCCEEEEEeCCCe-EEeccc-
Q psy11350        224 KLWSLDKDTP-----------------------LANLEGHEPF-------RVSRIKFHPSGRFLGTCCWDHS-WRLDTP-  271 (471)
Q Consensus       224 ~iwd~~~~~~-----------------------~~~~~~~~~~-------~v~~~~~s~~~~~i~~~~~d~~-~~~~~~-  271 (471)
                      ++|++...+.                       +..+......       .....++++++..+++++.++. +.++.. 
T Consensus        70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecc
Confidence            9998643210                       0011111111       1223456777888888887763 444321 


Q ss_pred             ----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE-eeCCCCCeEEEEEeCC----------CCE
Q psy11350        272 ----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLH-QEGHGKPVYCMSFQGD----------GSV  336 (471)
Q Consensus       272 ----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~d----------~~~  336 (471)
                          ...+.......+++++|+|++.+|++|+.||.|++||+.+++.... +.+|..+|++++|+|+          +.+
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             ccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence                2223333456799999999999999999999999999999876654 6789999999999874          468


Q ss_pred             EEEEeCCCeEEEEeCCC-CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        337 VATGGLDAFGRVWDLRT-GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       337 l~t~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      |++|+.|+.|+|||+++ ++.+..+.+|...|++++|+|++ .|++++.||+|++|++
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999999999977 56777888999999999999986 6899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-27  Score=217.17  Aligned_cols=232  Identities=21%  Similarity=0.425  Sum_probs=191.4

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      ...+|...|+|++  +||++||+|+.||+|+|||+.+++++.++.+|...|++++|+  +.     +|++|+.||.|++|
T Consensus        10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~~-----~l~s~s~D~~i~~~   80 (293)
T d1p22a2          10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ER-----VIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--SS-----EEEEEETTSCEEEE
T ss_pred             ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--cc-----eeeccccccccccc
Confidence            3457899999875  578999999999999999999999999999999999999884  33     79999999999999


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEecccc--------ccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPL--------ANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ++..+...........   ....+.+....++++..++...++...        ..+..+ ...+..+.+.  ...++++
T Consensus        81 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~~  154 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCE---AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--DKYIVSA  154 (293)
T ss_dssp             ESSSCCEEEEECCCCS---CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEEE--TTEEEEE
T ss_pred             cccccccccccccccc---ccccccccccceeecccccceeEeecccccccccccccccc-ccccccceec--ccccccc
Confidence            9998887776665543   334556677788888888886654321        122333 4457666665  4578899


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCE
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  378 (471)
                      +.|+.|++||+++++.+..+.++...+..+.++  +.++++++.||.|++||+++...+..+.+|...+..  +++++.+
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence            999999999999999999999999999888876  468999999999999999999999999999888876  4567889


Q ss_pred             EEEEeCCCcEEEEECCCcc
Q psy11350        379 LATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       379 l~s~s~dg~i~iwd~~~~~  397 (471)
                      |++|+.||.|++||+....
T Consensus       231 l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHT
T ss_pred             EEEEcCCCEEEEEECCCCc
Confidence            9999999999999986543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.2e-27  Score=218.56  Aligned_cols=268  Identities=15%  Similarity=0.178  Sum_probs=192.9

Q ss_pred             CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        184 CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       184 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                      |+..+.+.||..+|++|+|+|++.     +|++|+.||+|++||+.+++....+.......|.+++|+|++.++ +++.|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~-----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d   75 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGK-----TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWD   75 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETT
T ss_pred             CccceEcCCCCCCcEEEEECCCCC-----EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccce
Confidence            567889999999999999999988     899999999999999999998888865555589999999999755 55567


Q ss_pred             CeEEeccccc-------cccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCE
Q psy11350        264 HSWRLDTPLA-------NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSV  336 (471)
Q Consensus       264 ~~~~~~~~~~-------~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  336 (471)
                      +.+.++....       .........+.+++|+|++.++++++ ++.+++|+...  .....  ....+.+++|+|++++
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQF  150 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCE
T ss_pred             eeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--cccccccccccccccc
Confidence            7765543211       11112245688999999998777665 67899999543  22222  3456789999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEE-EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc----------
Q psy11350        337 VATGGLDAFGRVWDLRTGRCIM-FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL----------  405 (471)
Q Consensus       337 l~t~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------  405 (471)
                      |++|+.||.|++||+++++... ....|...|++++|+|++.+|++++.|+.|++||+.++..+......          
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998886543 34568899999999999999999999999999999887655433222          


Q ss_pred             --CCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEeecC
Q psy11350        406 --LPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVLNQ  470 (471)
Q Consensus       406 --~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~~~  470 (471)
                        .+....+++...|+.+.+|+.............        ......-...+++++++|+.++.+
T Consensus       231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG--------AHAMSSVNSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT--------SSTTSCEEEEEEEETTEEEEEETT
T ss_pred             cccccccceEEEcCCCEEEEEECCCCCcceEEEec--------CCCCCcEEEEEECCCCEEEEEeCC
Confidence              223333444445556666654443222111100        001111223456778888888765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.8e-27  Score=218.81  Aligned_cols=264  Identities=16%  Similarity=0.253  Sum_probs=197.0

Q ss_pred             cchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC--EEEEEE
Q psy11350        125 EATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCN--VGAIEF  202 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~  202 (471)
                      ..++.++.|++.    .......+.+|.++|++++|+|+ .+|++|+.||.|++|++...+.......+...  +....+
T Consensus        30 s~Dg~i~vWd~~----~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  104 (355)
T d1nexb2          30 ADDKMIRVYDSI----NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE  104 (355)
T ss_dssp             ETTTEEEEEETT----TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEE
T ss_pred             eCCCeEEEEECC----CCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccc
Confidence            345555666543    23456678899999999999985 58999999999999999988877766544433  445566


Q ss_pred             eeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC------------c--------ceEEEEECCCCCEEEEEeC
Q psy11350        203 HPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP------------F--------RVSRIKFHPSGRFLGTCCW  262 (471)
Q Consensus       203 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------~--------~v~~~~~s~~~~~i~~~~~  262 (471)
                      .+++.     ++++++.|+.|++||+.+............            .        ......+.+++++++++..
T Consensus       105 ~~~~~-----~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (355)
T d1nexb2         105 YKNIK-----YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY  179 (355)
T ss_dssp             ETTEE-----EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred             ccccc-----eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence            66665     799999999999999987654332211110            0        1122345677899999999


Q ss_pred             CCeEEeccc-----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEE
Q psy11350        263 DHSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVV  337 (471)
Q Consensus       263 d~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  337 (471)
                      |+.+.++..     .....++ ...+.++.|+|++.++++++.|++|++||++++..+..+.+|...|.+++|++  ++|
T Consensus       180 d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l  256 (355)
T d1nexb2         180 DNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFL  256 (355)
T ss_dssp             TSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEE
T ss_pred             cceeeeeecccccceeeeecc-ccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--cee
Confidence            998666432     2233344 45789999999999999999999999999999999999999999999999864  699


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEecccCcCEEEE-EEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        338 ATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSV-DFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       338 ~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      ++|+.||.|++||++++....  ..|...+.++ .+++++.+|++| .||.|+|||+++++++.....
T Consensus       257 ~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~  321 (355)
T d1nexb2         257 VSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANIL  321 (355)
T ss_dssp             EEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTT
T ss_pred             eeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEec
Confidence            999999999999999886544  4466666655 456677777666 589999999999998865433

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=221.54  Aligned_cols=254  Identities=16%  Similarity=0.195  Sum_probs=182.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEE-----Ee-----ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQ-----TF-----RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~-----~~-----~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      +.++++++.||.|++|++.......     ..     ..+...+..++|.+........++++++.||++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            3568899999999999975432211     11     1245668889998876543334789999999999999743210


Q ss_pred             ---------------eeee--cCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----------cccccCCCCcceEE
Q psy11350        234 ---------------LANL--EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----------LANLEGHEPFRVSR  285 (471)
Q Consensus       234 ---------------~~~~--~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----------~~~~~~~~~~~v~~  285 (471)
                                     ....  .......+.+++|+|++ ++++|+.|+.+++|..           ...+.+| ...|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h-~~~V~~  236 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRS  236 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccc-cceEEE
Confidence                           0011  11222358899999998 8899999999877642           2233455 568999


Q ss_pred             EEECCCCCEEEEEecCCe---EEEEECCCCcEEEEe-------------eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy11350        286 IKFHPSGRFLGTCCWDHS---WRLWDLNQGQEVLHQ-------------EGHGKPVYCMSFQGDGSVVATGGLDAFGRVW  349 (471)
Q Consensus       286 l~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iw  349 (471)
                      ++|+|+|++|++|+.|++   |++||+++++.+..+             .+|...|++++|+||+++|++|+.|++|+||
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999999999999874   999999999877765             3799999999999999999999999999999


Q ss_pred             eCCCCeeEEEecccCcCEE----EEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeeeec
Q psy11350        350 DLRTGRCIMFLEGHLKSVF----SVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLE  425 (471)
Q Consensus       350 d~~~~~~~~~~~~h~~~v~----~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  425 (471)
                      |+.+++++.++.+|...|.    .++|+|++..+++++   ...+|.+..+....   ......-.+.++..|..++++.
T Consensus       317 d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSG---MGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC---EEEEEEECTTTSBS---TTCTTSCEEEEEETTTEEEEEE
T ss_pred             ECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc---cceEEECccCceec---cccCCCCEEEEEEcCCeEEEEe
Confidence            9999999999999998876    488999998876554   22333333322111   1112223466777777777665

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-24  Score=200.33  Aligned_cols=257  Identities=23%  Similarity=0.419  Sum_probs=203.8

Q ss_pred             cchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEee
Q psy11350        125 EATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      ..++.++.|++.    .......+.+|..+|.+++|+|+  +|++|+.|+.+++|+............+...+....+.+
T Consensus        34 s~Dg~i~vWd~~----~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (342)
T d2ovrb2          34 SDDNTLKVWSAV----TGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE  107 (342)
T ss_dssp             ETTSCEEEEETT----TCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred             eCCCeEEEEECC----CCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeeccc
Confidence            345556666543    23445678899999999999974  999999999999999988887777777777776665544


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----cccccCCC
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLEGHE  279 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~~~~  279 (471)
                      .       .++.+..|+.+.+|+..+++....+.....   ......+....++.++.++.+.++..     ...+.+| 
T Consensus       108 ~-------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-  176 (342)
T d2ovrb2         108 K-------RVVSGSRDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH-  176 (342)
T ss_dssp             T-------EEEEEETTSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC-
T ss_pred             c-------cccccccceeEEEeecccccceeeeecccc---cceeeccccceeeeecCCCeEEEeecccceeeEEEcCc-
Confidence            3       578899999999999998887776665443   23345566788899999998777433     2334455 


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~  359 (471)
                      .  .....+++++.+|++++.||.|++||++.++.+..+.+|...+.++++++  ++|++|+.|+.|++||+...+....
T Consensus       177 ~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~  252 (342)
T d2ovrb2         177 T--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQT  252 (342)
T ss_dssp             S--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             c--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccccccc
Confidence            2  33444555788999999999999999999999999999999999888765  5999999999999999999888777


Q ss_pred             ecc---cCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecc
Q psy11350        360 LEG---HLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       360 ~~~---h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +..   |...+.++.++  +.++++|+.||+|++||++++++++.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         253 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred             ccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEec
Confidence            764   55677777775  56999999999999999999999887754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.1e-25  Score=212.03  Aligned_cols=245  Identities=10%  Similarity=-0.029  Sum_probs=184.8

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATASWSG--LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKL  225 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  225 (471)
                      ..+|...|.+++|+|||++|++++.+.  .|++||+.+++.. .+..|...|.+++|+|++.     +|++++.++.+.+
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~-----~l~~~~~~~~~~~  111 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK-----FAVVANDRFEIMT  111 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS-----EEEEEETTSEEEE
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeeccccc-----ccceecccccccc
Confidence            347999999999999999998776553  7999999887654 5678999999999999998     7999999999999


Q ss_pred             EeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe----------EEec---cccccccCCCCcceEEEEECCCC
Q psy11350        226 WSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS----------WRLD---TPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       226 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~----------~~~~---~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      |++.+++....+..+.. .+.+++|+|+|++|+.+..+..          +.++   .............+..+.|+|+|
T Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg  190 (360)
T d1k32a3         112 VDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS  190 (360)
T ss_dssp             EETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTS
T ss_pred             ccccccceeeeeecccc-cccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCC
Confidence            99999988888877765 7899999999999987654332          2222   21111112224568899999999


Q ss_pred             CEEEEEecCCeEEEEECCCCcE-------EEEeeCC------------------------------------CCCeEEEE
Q psy11350        293 RFLGTCCWDHSWRLWDLNQGQE-------VLHQEGH------------------------------------GKPVYCMS  329 (471)
Q Consensus       293 ~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~------------------------------------~~~v~~~~  329 (471)
                      ++|++++.++.+.+||......       ...+..|                                    .+....+.
T Consensus       191 ~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (360)
T d1k32a3         191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII  270 (360)
T ss_dssp             CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE
T ss_pred             CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEee
Confidence            9999999999999998754321       1111111                                    11222333


Q ss_pred             EeCCCC-------------EEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        330 FQGDGS-------------VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       330 ~s~d~~-------------~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      ..+++.             ++++++.++.|++||+.+++..    .|.+.|.+++|+|||++|++++.||.|++||+.++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            333322             3345567889999999887643    34466999999999999999999999999999999


Q ss_pred             cchheec
Q psy11350        397 RLLKWCT  403 (471)
Q Consensus       397 ~~~~~~~  403 (471)
                      ....++.
T Consensus       347 ~~~~~~~  353 (360)
T d1k32a3         347 EDERTVE  353 (360)
T ss_dssp             TSCEECC
T ss_pred             CcceEEE
Confidence            8876654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.2e-24  Score=204.83  Aligned_cols=192  Identities=13%  Similarity=0.062  Sum_probs=161.2

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCC--cEEEEeCCCCcc
Q psy11350        157 YCSFSP-DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDG--SVKLWSLDKDTP  233 (471)
Q Consensus       157 ~~~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~  233 (471)
                      +-.||| ||+++|+++ .|.|++||+.++..++.  +|...|.+++|+|+++     .|++++.+.  .|++||+.+++.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~-----~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTK-----VAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSE-----EEEEEEETTEEEEEEEETTTCCE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCC-----EEEEEEcCCCCEEEEEECCCCcE
Confidence            357999 999999988 68999999988877653  6899999999999998     576665543  799999987654


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCc
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQ  313 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  313 (471)
                      .. +..+                                       ...+.+++|+|++++|++++.++.+++|++.+++
T Consensus        79 ~~-~~~~---------------------------------------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          79 EK-FEEN---------------------------------------LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             EE-CCCC---------------------------------------CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EE-eeCC---------------------------------------CceEEeeeecccccccceeccccccccccccccc
Confidence            32 3222                                       3369999999999999999999999999999999


Q ss_pred             EEEEeeCCCCCeEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEe
Q psy11350        314 EVLHQEGHGKPVYCMSFQGDGSVVATGG----------LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGS  383 (471)
Q Consensus       314 ~~~~~~~~~~~v~~~~~s~d~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  383 (471)
                      ....+..|...+.+++|+|||++|+.++          .++.+++||+.+++... +..|...+..++|+|+|++|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe
Confidence            9999999999999999999999998653          34569999999887654 445778899999999999999999


Q ss_pred             CCCcEEEEECCCcc
Q psy11350        384 EDNAVKIWDLRKRR  397 (471)
Q Consensus       384 ~dg~i~iwd~~~~~  397 (471)
                      .++.+.+||.....
T Consensus       198 ~~~~~~~~d~~~~~  211 (360)
T d1k32a3         198 YRSLDPSPDRVVLN  211 (360)
T ss_dssp             SCCCCCEECSSSSC
T ss_pred             CCCceEcccccccc
Confidence            99999999976543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-24  Score=196.21  Aligned_cols=245  Identities=23%  Similarity=0.445  Sum_probs=188.0

Q ss_pred             cchhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEee
Q psy11350        125 EATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHP  204 (471)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~  204 (471)
                      ..++.++.|++    ........+.+|+.+|++++|  ++++|++|+.||.|++|++..+........+.....  .+.+
T Consensus        32 s~Dg~i~vWd~----~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~  103 (293)
T d1p22a2          32 LRDNTIKIWDK----NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRF  103 (293)
T ss_dssp             ESSSCEEEEES----SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEEC
T ss_pred             eCCCeEEEEEC----CCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--cccc
Confidence            34555566654    234456678899999999877  678999999999999999999888777765544433  3334


Q ss_pred             CCCCCCccEEEEEeCCCcEEEEeCCCCccee---eecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc-----ccccc
Q psy11350        205 LPSEGAVCSLASCAQDGSVKLWSLDKDTPLA---NLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP-----LANLE  276 (471)
Q Consensus       205 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~-----~~~~~  276 (471)
                      ...     .++++..++.+.+|+..+.....   .+..+.. .+..+.+.  ...+++++.|+.+.++..     ...+.
T Consensus       104 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~  175 (293)
T d1p22a2         104 NNG-----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN  175 (293)
T ss_dssp             CTT-----EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccc-----ceeecccccceeEeecccccccccccccccccc-ccccceec--ccccccccCCCceeeecCCCCcEEEEEc
Confidence            444     68999999999999987765433   2333333 56665554  567888999998766432     33344


Q ss_pred             CCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---
Q psy11350        277 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT---  353 (471)
Q Consensus       277 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~---  353 (471)
                      ++ ...+..+.++  +.++++++.||+|++||+++.+.+....+|...+..  +++++.+|++|+.||.|++||+.+   
T Consensus       176 ~~-~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~  250 (293)
T d1p22a2         176 GH-KRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALD  250 (293)
T ss_dssp             CC-SSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             cc-ccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCcc
Confidence            44 3456666665  578999999999999999999999999999888865  556788999999999999999753   


Q ss_pred             ------CeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy11350        354 ------GRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       354 ------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd  392 (471)
                            ..++..+.+|.+.|++++|+  +.+|+|||.||+|+|||
T Consensus       251 ~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         251 PRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence                  35678899999999999994  67899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.3e-24  Score=194.44  Aligned_cols=198  Identities=15%  Similarity=0.230  Sum_probs=152.8

Q ss_pred             CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        184 CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       184 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                      .++++++++|..+|++++|+|         |+||+.||+|++||+.++.     ..|.. .|.++.+++++ .+++++.|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~---------l~sgs~Dg~v~~Wd~~~~~-----~~h~~-~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP---------LISGSYDGRIMEWSSSSMH-----QDHSN-LIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT---------TEEEETTSCEEETTTTEEE-----CCCCS-CEEEEECCSTT-CCEEEETT
T ss_pred             cceeEEECCCCCceEEEEECc---------EEEEeCCCeEEEEECCCCC-----CCCCC-CEEEEEecCCC-eEEEEeec
Confidence            478899999999999999975         7999999999999987643     34444 78899988664 56788888


Q ss_pred             CeEEecccccc----------------------------ccCCCCc-------ceEEEEECCCCCEEEEEecCC-eEEEE
Q psy11350        264 HSWRLDTPLAN----------------------------LEGHEPF-------RVSRIKFHPSGRFLGTCCWDH-SWRLW  307 (471)
Q Consensus       264 ~~~~~~~~~~~----------------------------~~~~~~~-------~v~~l~~~~~~~~l~~~~~dg-~i~iw  307 (471)
                      +.++++.....                            +......       .....++++++..+++++.++ .+++|
T Consensus        67 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             cccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeee
Confidence            87666422110                            0000000       112345667788888888775 69999


Q ss_pred             ECCCCcEEEEee-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEE-EecccCcCEEEEEEcCC----------
Q psy11350        308 DLNQGQEVLHQE-GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIM-FLEGHLKSVFSVDFSPD----------  375 (471)
Q Consensus       308 d~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~sp~----------  375 (471)
                      ++...+....+. .|..++++++|+|++.+|++|+.||.|++||+.++.... .+.+|...|.+++|+|.          
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence            998766555543 477899999999999999999999999999999988765 46789999999999874          


Q ss_pred             CCEEEEEeCCCcEEEEECCCcc
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRR  397 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~  397 (471)
                      +.+|++|+.|++|+|||++++.
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTT
T ss_pred             CCeeEeecCCCeEEEEECCCCC
Confidence            4689999999999999998744

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=3e-22  Score=183.37  Aligned_cols=240  Identities=12%  Similarity=0.077  Sum_probs=189.3

Q ss_pred             cCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC
Q psy11350        153 RPISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD  231 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  231 (471)
                      ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..|. .+..+.|++++..    +++++..++.+.+|+..++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQ----VYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE----EEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccc----ccccccccceeeecccccc
Confidence            4578899999999885 56678999999999999999988775 4689999999874    5667778889999999999


Q ss_pred             cceeeecCCCCcceEEEEECCCCCEEEEEeC-CCeEEecc---c--cccccCCCCcceEEEEECCCCCEEEEEecC-CeE
Q psy11350        232 TPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLDT---P--LANLEGHEPFRVSRIKFHPSGRFLGTCCWD-HSW  304 (471)
Q Consensus       232 ~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~~~---~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i  304 (471)
                      +....+..+.  ...++.|+|++..++..+. +....++.   .  ...+..  ...+..+.++|++..+++++.+ +.+
T Consensus       107 ~~~~~~~~~~--~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         107 TVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSMSI  182 (301)
T ss_dssp             EEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeccccc--cceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc--CCCceEEEeeccccceeeeccccccc
Confidence            8888877665  6789999999998876654 44433321   1  112222  2357899999999988888765 567


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE-E
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL-A  380 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~  380 (471)
                      .+|+....+....... ...+..++|++++..+++++   .++.|++||+.+++.+..+..+ ..+.+++|+|||++| +
T Consensus       183 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~v  260 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYV  260 (301)
T ss_dssp             EEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             ccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEE
Confidence            7888777766665554 45567899999999877654   3468999999999998887644 568999999999976 5


Q ss_pred             EEeCCCcEEEEECCCccchheec
Q psy11350        381 TGSEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       381 s~s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      +++.|++|++||+.+++++.+++
T Consensus       261 a~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         261 ALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE
T ss_pred             EECCCCeEEEEECCCCeEEEEEe
Confidence            77789999999999999988775

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.2e-23  Score=193.54  Aligned_cols=261  Identities=11%  Similarity=0.078  Sum_probs=187.3

Q ss_pred             chhhhhhHHHHhhccccceeeeeecCCcCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEE-EEEEe
Q psy11350        126 ATRTARNQELQKHLTSLSIYCSQVGDTRPISYCSFSPDS-QHVATASWSGLCKLWTVPECELVQTFRGHDCNVG-AIEFH  203 (471)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~  203 (471)
                      .++.++.|++....... ......+|..+|.+++|+|++ .+|++|+.||.|++|++..+........+...+. ...+.
T Consensus        31 ~Dg~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T d1yfqa_          31 WDGSLTVYKFDIQAKNV-DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK  109 (342)
T ss_dssp             TTSEEEEEEEETTTTEE-EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE
T ss_pred             CCCeEEEEEccCCCcce-EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccc
Confidence            45555665543322212 223344799999999999975 5789999999999999998877777665554443 44455


Q ss_pred             eCCCCCCccEEEEEeCCCcEEEEeCCCCcceeee----cCC-CCcceEEEEECCCCCEEEEEeCCCeEEecccccc----
Q psy11350        204 PLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANL----EGH-EPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLAN----  274 (471)
Q Consensus       204 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~-~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~----  274 (471)
                      +...     .+++++.++++++||++++......    ..+ .......+.+.+.+..+++++.|+.+.++.....    
T Consensus       110 ~~~~-----~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  184 (342)
T d1yfqa_         110 YGDD-----KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN  184 (342)
T ss_dssp             ETTT-----EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred             cccc-----cccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence            5555     7999999999999998654433222    111 1224566778889999999999999766432111    


Q ss_pred             ---ccCCCCcceEEEEECC-CCCEEEEEecCCeEEEEECCCCcEE---------E------EeeCCCCCeEEEEEeCCCC
Q psy11350        275 ---LEGHEPFRVSRIKFHP-SGRFLGTCCWDHSWRLWDLNQGQEV---------L------HQEGHGKPVYCMSFQGDGS  335 (471)
Q Consensus       275 ---~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~---------~------~~~~~~~~v~~~~~s~d~~  335 (471)
                         ........+.+..+.+ ++..+++++.||.+.+|++......         .      ...+|...|++++|+|++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  264 (342)
T d1yfqa_         185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK  264 (342)
T ss_dssp             CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred             eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc
Confidence               1111123455555554 6789999999999999998643211         1      1235677899999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy11350        336 VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDL  393 (471)
Q Consensus       336 ~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~  393 (471)
                      +|++|+.||.|+|||+++++.+..+..+ ..+..++|+|++++|++++.|+++++|..
T Consensus       265 ~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         265 FLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            9999999999999999999999888643 34556788889999999999998888864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.1e-22  Score=196.93  Aligned_cols=255  Identities=11%  Similarity=0.015  Sum_probs=178.8

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE--ee---cCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQT--FR---GHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~---~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      ....+.+| ..+..++|||||++|++++.||+|++||+.+++....  +.   +|...+.+++|+|++..    +++++.
T Consensus        54 ~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~----l~v~~~  128 (426)
T d1hzua2          54 IVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY----TIAGAY  128 (426)
T ss_dssp             EEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE----EEEEEE
T ss_pred             EEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE----EEEeec
Confidence            33445555 4689999999999999999999999999998875443  22   45555667778888883    456667


Q ss_pred             CCCcEEEEeCCCCcceeeecCCCC----------cceEEEEECCCCCEEEEEeCCCe-EEe---ccc---cccccCCCCc
Q psy11350        219 QDGSVKLWSLDKDTPLANLEGHEP----------FRVSRIKFHPSGRFLGTCCWDHS-WRL---DTP---LANLEGHEPF  281 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~i~~~~~d~~-~~~---~~~---~~~~~~~~~~  281 (471)
                      .++.+.+||..++.+...+..+..          .....+.+++++..++....+.. +.+   ...   ......+ ..
T Consensus       129 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~  207 (426)
T d1hzua2         129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-AP  207 (426)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC-CS
T ss_pred             CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc-CC
Confidence            899999999999887766554321          13456677777777666555432 111   111   0011122 33


Q ss_pred             ceEEEEECCCCCEEEEEec-CCeEEEEECCCC------------------------------------------------
Q psy11350        282 RVSRIKFHPSGRFLGTCCW-DHSWRLWDLNQG------------------------------------------------  312 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~------------------------------------------------  312 (471)
                      .+..+.|+|++++++++.. +..+.+++..++                                                
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            5778888888887666543 334555554432                                                


Q ss_pred             ------cEEEEeeCCCCCeEEEEEeCCCCEEEE-------EeCCCeEEEEeCCCCeeEEEe---------cccCcCEEEE
Q psy11350        313 ------QEVLHQEGHGKPVYCMSFQGDGSVVAT-------GGLDAFGRVWDLRTGRCIMFL---------EGHLKSVFSV  370 (471)
Q Consensus       313 ------~~~~~~~~~~~~v~~~~~s~d~~~l~t-------~~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~~  370 (471)
                            +....+.+|...+..++|+||+++|++       ++.+++|+|||+.++++..++         ..|...|.++
T Consensus       288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~  367 (426)
T d1hzua2         288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP  367 (426)
T ss_dssp             CTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred             cccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE
Confidence                  334456678888999999999999995       456789999999998766554         2456679999


Q ss_pred             EEcCCCCEEE-EE----eCCCcEEEEECCCccchheecc
Q psy11350        371 DFSPDGYHLA-TG----SEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       371 ~~sp~~~~l~-s~----s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      +|||||++++ ++    +.+|.|+|||.++++.+..+..
T Consensus       368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             EECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence            9999999774 33    3578899999999998877654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=7.7e-22  Score=183.46  Aligned_cols=233  Identities=12%  Similarity=0.048  Sum_probs=177.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecC--CCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGH--DCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP  242 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  242 (471)
                      +||++++.|++|.|||+.+++.+..+..+  ...+.+++|+|++..    ++++++.++.|.+||+.+++.+..+..+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~----l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI----AYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE----EEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCE----EEEEECCCCeEEEEECCCCcEEEEEecCCC
Confidence            58999999999999999999999988753  355789999999983    346778899999999999998888766543


Q ss_pred             ----cceEEEEECCCCCEEEEEeCCCeE------------Eec---c--ccccccCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        243 ----FRVSRIKFHPSGRFLGTCCWDHSW------------RLD---T--PLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       243 ----~~v~~~~~s~~~~~i~~~~~d~~~------------~~~---~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                          ..+..++|+|++++++++..+...            .++   .  ....+..  ...+.+++|+|+|+++++++. 
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~-  154 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGLGR-  154 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEESS-
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc--cCCceEEEEcCCCCEEEEEcC-
Confidence                235579999999999888765431            111   1  1111111  235778999999999998864 


Q ss_pred             CeEEEEECCCCcEEEEe---------------------------------------------------------------
Q psy11350        302 HSWRLWDLNQGQEVLHQ---------------------------------------------------------------  318 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~---------------------------------------------------------------  318 (471)
                       .+.+||..+++....+                                                               
T Consensus       155 -~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         155 -DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             -SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             -CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence             4667887665433322                                                               


Q ss_pred             ---eCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        319 ---EGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       319 ---~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                         ..+...+..+.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.||+|+|||..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             EEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence               1233344566777777777665  5889999999999998875 567889999999999999999999999999999


Q ss_pred             ccchheecccCCC
Q psy11350        396 RRLLKWCTQLLPN  408 (471)
Q Consensus       396 ~~~~~~~~~~~~~  408 (471)
                      ++.+.++..+...
T Consensus       311 ~~~v~~i~~~g~~  323 (337)
T d1pbyb_         311 LEKKGQVDLPGNA  323 (337)
T ss_dssp             CCEEEEEECGGGC
T ss_pred             CcEEEEEECCCCC
Confidence            9999888654443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=2.9e-21  Score=180.15  Aligned_cols=244  Identities=10%  Similarity=0.024  Sum_probs=172.7

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee
Q psy11350        158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       158 ~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  236 (471)
                      ++|++++++|++++.+++|.+||+.+++.+.++. .|...+.+++|+|++..    ++++++.++.|.+||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~----l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT----AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE----EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCE----EEEEECCCCcEEEEeCccCeeeee
Confidence            4689999999999999999999999999999887 45667889999999983    456677899999999999988877


Q ss_pred             ecCCCC-----cceEEEEECCCCCEEEEEeCCCe------------EEec---cc--cccccC-CCCcceEEEEECCCCC
Q psy11350        237 LEGHEP-----FRVSRIKFHPSGRFLGTCCWDHS------------WRLD---TP--LANLEG-HEPFRVSRIKFHPSGR  293 (471)
Q Consensus       237 ~~~~~~-----~~v~~~~~s~~~~~i~~~~~d~~------------~~~~---~~--~~~~~~-~~~~~v~~l~~~~~~~  293 (471)
                      +.....     ..+..++|+|||+++++++.+..            +.+.   ..  ...+.. ..+..+..+.+++++.
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            654332     13567999999999987764322            1111   00  000000 0011122233333332


Q ss_pred             EEEE----------------------------------------------------------------EecCCeEEEEEC
Q psy11350        294 FLGT----------------------------------------------------------------CCWDHSWRLWDL  309 (471)
Q Consensus       294 ~l~~----------------------------------------------------------------~~~dg~i~iwd~  309 (471)
                      .+++                                                                +..++.+.+||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            2221                                                                122234555555


Q ss_pred             CCCcEEEE-eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcE
Q psy11350        310 NQGQEVLH-QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAV  388 (471)
Q Consensus       310 ~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i  388 (471)
                      .++..... ...|...+.++.+++++.+++.+. ++.|.+||+.+++.+..+. +...+.+++|+|||++|++++.||.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            55543322 345666777888888877777665 4679999999999888776 45679999999999999999999999


Q ss_pred             EEEECCCccchheecccCC
Q psy11350        389 KIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       389 ~iwd~~~~~~~~~~~~~~~  407 (471)
                      ++||+.+++.+.++..+..
T Consensus       316 ~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         316 AVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEETTTTEEEEEEECSSS
T ss_pred             EEEECccCCEEEEEECCCC
Confidence            9999999999998875443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=5.7e-20  Score=177.48  Aligned_cols=290  Identities=11%  Similarity=-0.017  Sum_probs=189.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeec--CCC-
Q psy11350        165 QHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLE--GHE-  241 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~-  241 (471)
                      -++++++.||.|+|||+.+++.+.++..|. .+..++|+|+++     ++++++.|++|++||+.+++......  ... 
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk-----~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~  106 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR-----YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  106 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSC-----EEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCC-----EEEEEeCCCCEEEEEccCCceeEEEEEeCCCC
Confidence            356788889999999999999999999874 589999999998     79999999999999999887654332  211 


Q ss_pred             -CcceEEEEECCCCCEEEEEe-CCCeEEecccc-----ccccC----------CCCcceEEEEECCCCCEEEEEec-CCe
Q psy11350        242 -PFRVSRIKFHPSGRFLGTCC-WDHSWRLDTPL-----ANLEG----------HEPFRVSRIKFHPSGRFLGTCCW-DHS  303 (471)
Q Consensus       242 -~~~v~~~~~s~~~~~i~~~~-~d~~~~~~~~~-----~~~~~----------~~~~~v~~l~~~~~~~~l~~~~~-dg~  303 (471)
                       ...+.+++|+|||+++++++ .++.+.++...     ..+..          ........+.+++++..++.... .+.
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~  186 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK  186 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe
Confidence             11355667788999876554 66665553211     11111          11234566777888877666554 456


Q ss_pred             EEEEECCCCcE-EEEeeCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCC---------------------------
Q psy11350        304 WRLWDLNQGQE-VLHQEGHGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTG---------------------------  354 (471)
Q Consensus       304 i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~---------------------------  354 (471)
                      +.+++...... .....++...+..+.|+|++++++++.. +..+.+|+..++                           
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (426)
T d1hzua2         187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP  266 (426)
T ss_dssp             EEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred             EEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCc
Confidence            77777665543 2334467788899999999987776653 334555554432                           


Q ss_pred             ---------------------------eeEEEecccCcCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCccchh
Q psy11350        355 ---------------------------RCIMFLEGHLKSVFSVDFSPDGYHLAT-------GSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       355 ---------------------------~~~~~~~~h~~~v~~~~~sp~~~~l~s-------~s~dg~i~iwd~~~~~~~~  400 (471)
                                                 +....+.+|...+..++|+|++++|++       ++.|++|+|||+.+++.+.
T Consensus       267 ~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         267 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             EEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             eEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence                                       334456677888999999999999994       5568899999999998876


Q ss_pred             eeccc--------CCCccceeeccccceeeeecccC----CCcccccchhhhcccccceeeecccceeeeecCCeEE
Q psy11350        401 WCTQL--------LPNSIGVTSLLTDLYIDVLESLN----PGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHA  465 (471)
Q Consensus       401 ~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA  465 (471)
                      ++...        ....+..+.++.|+...++..+.    .+...++..........++..     -.++|+|++.+
T Consensus       347 ~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~-----~~~tp~Gk~~~  418 (426)
T d1hzua2         347 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP-----RLITPTGKFNV  418 (426)
T ss_dssp             EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT-----TCCSEEEEEEH
T ss_pred             EEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC-----CccCCCceEeE
Confidence            65321        11223344566666544333222    222333333333322222221     15678888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=6.3e-19  Score=160.91  Aligned_cols=267  Identities=12%  Similarity=0.040  Sum_probs=192.7

Q ss_pred             EEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEE
Q psy11350        168 ATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSR  247 (471)
Q Consensus       168 ~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  247 (471)
                      ++++.+++|.+||+.+++.+.++... ..+..++|+|++..    ++++++.++.|.+||+.+++.+..+..+.  .+..
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~----l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--~~~~   78 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTK----VYVANAHSNDVSIIDTATNNVIATVPAGS--SPQG   78 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE----EEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCE----EEEEECCCCEEEEEECCCCceeeeeeccc--cccc
Confidence            45678999999999999999988754 45789999999983    34677789999999999999998887765  5789


Q ss_pred             EEECCCCCEEEEEeCC-CeEEeccc-----cccccCCCCcceEEEEECCCCCEEEE-EecCCeEEEEECCCCcEEEEeeC
Q psy11350        248 IKFHPSGRFLGTCCWD-HSWRLDTP-----LANLEGHEPFRVSRIKFHPSGRFLGT-CCWDHSWRLWDLNQGQEVLHQEG  320 (471)
Q Consensus       248 ~~~s~~~~~i~~~~~d-~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~  320 (471)
                      +.|++++.++++.+.+ +.+.++..     ...+..  .....++.|+|++..++. +..++.+.+|+..+...+..+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccccceeeecccccceeeeeccc--cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence            9999999987766654 44444221     222222  335788999999997754 55678899999999988877765


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCc
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGLD-AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE---DNAVKIWDLRKR  396 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~  396 (471)
                      + ..+..++++|++..+++++.+ +.+.+|+....+....+.. ...+..++|++++..++.++.   ++.|++||+.++
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             C-CCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence            4 457889999999988877765 6677888877777766654 456788999999998876543   467999999999


Q ss_pred             cchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccce
Q psy11350        397 RLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIP  447 (471)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (471)
                      +.+..+...  ....-++++.|....++.....+...++.......+..++
T Consensus       235 ~~~~~~~~~--~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         235 KITARIPVG--PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEcCC--CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            988776532  2233455566655443343334444444433333334433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=5.3e-20  Score=177.77  Aligned_cols=256  Identities=11%  Similarity=-0.052  Sum_probs=174.0

Q ss_pred             eeeeeecCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce--EEEee---cCCCCEEEEEEeeCCCCCCccEEEEEe
Q psy11350        144 IYCSQVGDTRPISYCSFSPDSQHVATASWSGLCKLWTVPECEL--VQTFR---GHDCNVGAIEFHPLPSEGAVCSLASCA  218 (471)
Q Consensus       144 ~~~~~~gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~~~~~~~~~l~s~~  218 (471)
                      ....+..| ..+..++|||||++|++++.||.|++||+.+++.  ...+.   .|.+.+.+..|+|+++.    ++++++
T Consensus        54 v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~----l~vs~~  128 (432)
T d1qksa2          54 IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY----AIAGAY  128 (432)
T ss_dssp             EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE----EEEEEE
T ss_pred             EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE----EEEEcC
Confidence            34444455 3699999999999999999999999999988763  33333   44455566677788873    457888


Q ss_pred             CCCcEEEEeCCCCcceeeecCCC----------CcceEEEEECCCCCEEEEEe-CCCeEEec---cc--cccccCCCCcc
Q psy11350        219 QDGSVKLWSLDKDTPLANLEGHE----------PFRVSRIKFHPSGRFLGTCC-WDHSWRLD---TP--LANLEGHEPFR  282 (471)
Q Consensus       219 ~dg~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~i~~~~-~d~~~~~~---~~--~~~~~~~~~~~  282 (471)
                      .+++|++||..+++++..+..+.          ......+.++|+|..+++.. .++.+.+.   ..  ......+....
T Consensus       129 ~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~  208 (432)
T d1qksa2         129 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF  208 (432)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred             CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCc
Confidence            99999999999999887765432          22566789999998776554 44554332   11  11122222346


Q ss_pred             eEEEEECCCCCEEEEEecC-CeEEEEECCCCcEEEEee------------------------------------------
Q psy11350        283 VSRIKFHPSGRFLGTCCWD-HSWRLWDLNQGQEVLHQE------------------------------------------  319 (471)
Q Consensus       283 v~~l~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~------------------------------------------  319 (471)
                      +..++|+|+|+++++++.+ +.+.++|..+++.+..+.                                          
T Consensus       209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             cccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc
Confidence            8899999999988877754 578888987655433211                                          


Q ss_pred             --CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe------------------------eEEE--------ecccCc
Q psy11350        320 --GHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR------------------------CIMF--------LEGHLK  365 (471)
Q Consensus       320 --~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~------------------------~~~~--------~~~h~~  365 (471)
                        .|...+....++|++..+++++.++..++|+..+..                        .+..        +..|..
T Consensus       289 ~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~  368 (432)
T d1qksa2         289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP  368 (432)
T ss_dssp             CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred             ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCC
Confidence              122235556677777767777767666666543210                        1111        224566


Q ss_pred             CEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCccchheecc
Q psy11350        366 SVFSVDFSPDGYHLATGS-----EDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~  404 (471)
                      .|.+++|+|||++++.+.     .+|.|.|||.+++++...+..
T Consensus       369 ~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         369 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             cEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence            789999999999885553     468899999999998776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1e-18  Score=165.02  Aligned_cols=249  Identities=10%  Similarity=-0.051  Sum_probs=177.5

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe------
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS-----WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA------  218 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~-----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~------  218 (471)
                      +|..++.+++++|||+.+++..     ..+.|.+||..+++.+..+..+..+  .++|+|++.     +|++++      
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~-----~l~va~~~~~~~   90 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS-----EFALASTSFSRI   90 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCC-----EEEEEeecCCcc
Confidence            6889999999999999987653     3467999999999999998876544  799999998     566654      


Q ss_pred             ----CCCcEEEEeCCCCcceeeecCCCCc------ceEEEEECCCCCEEEEEeCCC--eEEecccc-ccccCCCCcceEE
Q psy11350        219 ----QDGSVKLWSLDKDTPLANLEGHEPF------RVSRIKFHPSGRFLGTCCWDH--SWRLDTPL-ANLEGHEPFRVSR  285 (471)
Q Consensus       219 ----~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~i~~~~~d~--~~~~~~~~-~~~~~~~~~~v~~  285 (471)
                          .++.|.+||..+++.+..+..+...      ....+.|+++++.+++...+.  .+.++... .....+ .....+
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  169 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-LSSPTC  169 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-ecccee
Confidence                4678999999999988877655432      235678999999877665443  33332221 111222 224667


Q ss_pred             EEECCCCCEE-EEEecCCeEEEEECCCCcEEEEeeC--------------------------CC----------------
Q psy11350        286 IKFHPSGRFL-GTCCWDHSWRLWDLNQGQEVLHQEG--------------------------HG----------------  322 (471)
Q Consensus       286 l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~----------------  322 (471)
                      +.++|+++.+ ++.+.|+.+.+|+...+........                          ..                
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEE
Confidence            8899988754 5778899999999765443221100                          00                


Q ss_pred             -----------------CCeEEEEEeCCCCEEE----------EEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        323 -----------------KPVYCMSFQGDGSVVA----------TGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       323 -----------------~~v~~~~~s~d~~~l~----------t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                                       .....+++++++..++          +...++.+.+||+.+++.+..+. +...+.+++|+||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spD  328 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQD  328 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCC
Confidence                             0112244555555443          34556788999999999888775 6678999999999


Q ss_pred             CCE--EEEEeCCCcEEEEECCCccchheecccCC
Q psy11350        376 GYH--LATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       376 ~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      |+.  +++++.|++|++||+.+++.+.++.....
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~  362 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence            984  46889999999999999999998875443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.3e-18  Score=166.05  Aligned_cols=201  Identities=10%  Similarity=-0.003  Sum_probs=154.8

Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceee--ec
Q psy11350        161 SPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLAN--LE  238 (471)
Q Consensus       161 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~  238 (471)
                      +++.-++++.+.+|.|.|||..+++++..+..| ..+..++|+|+++     ++++++.||+|.+||+.+++....  +.
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~-----~l~~~s~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-----YLFVIGRDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-----EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCC-----EEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence            444445688899999999999999999999877 4689999999999     799999999999999988764322  22


Q ss_pred             CCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEE-EEEecCCeEEEEECCCCcEEEE
Q psy11350        239 GHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL-GTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       239 ~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                      ...                                   .+ ...+.+..|+|||++| ++++.+++|++||..+++++..
T Consensus       103 ~~~-----------------------------------~~-~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2         103 IGS-----------------------------------EA-RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             CCS-----------------------------------EE-EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             cCC-----------------------------------CC-CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            111                                   00 1234556678899976 6778899999999999998877


Q ss_pred             eeC-----------CCCCeEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCeeEEEec-ccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        318 QEG-----------HGKPVYCMSFQGDGSVV-ATGGLDAFGRVWDLRTGRCIMFLE-GHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       318 ~~~-----------~~~~v~~~~~s~d~~~l-~t~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                      +..           +......+.++|+|..+ ++...++.|.+||..+++...... .+...+..++|+|+|+++++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             eccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            654           34556788999998865 456678999999998876554332 35567899999999998777765


Q ss_pred             -CCcEEEEECCCccchheec
Q psy11350        385 -DNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       385 -dg~i~iwd~~~~~~~~~~~  403 (471)
                       ++.+.+||..+++.+..+.
T Consensus       227 ~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         227 ARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             GGTEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEeecccceEEEEec
Confidence             5679999999888876554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=5.5e-18  Score=158.66  Aligned_cols=243  Identities=14%  Similarity=0.056  Sum_probs=173.6

Q ss_pred             EEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecCCC-------CEEEEEEeeCCCCCCccEEEEE-
Q psy11350        156 SYCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGHDC-------NVGAIEFHPLPSEGAVCSLASC-  217 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~~~~~~l~s~-  217 (471)
                      ..++|||||++|++++          .++.|++||+.+++.+..+..+..       ....++|+|++.     .++.+ 
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-----~~~v~~  124 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-----TLLFYQ  124 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-----EEEEEE
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC-----eeEEec
Confidence            3689999999887653          478999999999999887764432       234678999987     45544 


Q ss_pred             -eCCCcEEEEeCCCCcceeeecCCCCc------ceEEEEECCCCCEEEEEeCCCe-EEeccccccccCCCCcceEEEEEC
Q psy11350        218 -AQDGSVKLWSLDKDTPLANLEGHEPF------RVSRIKFHPSGRFLGTCCWDHS-WRLDTPLANLEGHEPFRVSRIKFH  289 (471)
Q Consensus       218 -~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~i~~~~~d~~-~~~~~~~~~~~~~~~~~v~~l~~~  289 (471)
                       +.+..+.+|+..+++.+..+......      ....+.+++++..++....+.. ............+ ...+....+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  203 (355)
T d2bbkh_         125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED-EFLINHPAYS  203 (355)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT-SCBCSCCEEE
T ss_pred             CCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee-cceeeecccc
Confidence             45678999999999887776654321      2345678888888776655443 2211111111111 2235566788


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCcEEE--EeeCCC----------CCeEEEEEeCCCCEEEEEeCC----------CeEE
Q psy11350        290 PSGRFLGTCCWDHSWRLWDLNQGQEVL--HQEGHG----------KPVYCMSFQGDGSVVATGGLD----------AFGR  347 (471)
Q Consensus       290 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~----------~~v~~~~~s~d~~~l~t~~~d----------g~i~  347 (471)
                      +++..++.++.++.+++|++..+....  ....+.          .....+++++++..++....+          ..|.
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  283 (355)
T d2bbkh_         204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  283 (355)
T ss_dssp             TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEE
Confidence            888899999999999999998875432  122111          223458899999988776543          3699


Q ss_pred             EEeCCCCeeEEEecccCcCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        348 VWDLRTGRCIMFLEGHLKSVFSVDFSPDGY--HLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       348 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      +||..+++.+..+. +...+.+++|+|||+  ++++++.|+.|++||+.+++.+.++...
T Consensus       284 v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         284 VLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            99999999888876 446689999999997  4567778999999999999999888644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=7e-18  Score=156.24  Aligned_cols=202  Identities=14%  Similarity=0.025  Sum_probs=155.1

Q ss_pred             CCcCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCC-----CEEEEEEeeCCCCCCccEEEEEe------
Q psy11350        151 DTRPISYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDC-----NVGAIEFHPLPSEGAVCSLASCA------  218 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~~~~l~s~~------  218 (471)
                      +...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+..+..     .+..++|+|++.     .++++.      
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-----~l~~~~~~~~~~  106 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-----TLAIYESPVRLE  106 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-----EEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc-----EEEEeecCCcce
Confidence            445678999999999875 667899999999999999988876543     334789999998     566554      


Q ss_pred             ------CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe-EEeccc--------------------
Q psy11350        219 ------QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS-WRLDTP--------------------  271 (471)
Q Consensus       219 ------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~-~~~~~~--------------------  271 (471)
                            .++.+.+||..++.....+....  .+..++|+|+|+++++++.+.. |+....                    
T Consensus       107 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         107 LTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             eeeccccccceeeccccCCeEEEeccccC--CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCC
Confidence                  46789999999998888877654  5788999999999998876643 221000                    


Q ss_pred             -ccc----------------------------------------------ccCCCCcceEEEEECCCCCEEEEEecCCeE
Q psy11350        272 -LAN----------------------------------------------LEGHEPFRVSRIKFHPSGRFLGTCCWDHSW  304 (471)
Q Consensus       272 -~~~----------------------------------------------~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i  304 (471)
                       ...                                              ...+....+..+.++|++.+++.+  ++.|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i  262 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccE
Confidence             000                                              000012235567778888877665  5899


Q ss_pred             EEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecc
Q psy11350        305 RLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEG  362 (471)
Q Consensus       305 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  362 (471)
                      ++||+.+++.+..+. +...+.+++|+|||++|++++.++.|+|||..+++.+.++..
T Consensus       263 ~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         263 ESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            999999999888775 566788999999999999999999999999999999888764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=4.2e-16  Score=144.06  Aligned_cols=245  Identities=12%  Similarity=0.107  Sum_probs=164.8

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEe---ecCCCCEEEEEEeeCCCCCCccEEEEEe-CCCcE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTF---RGHDCNVGAIEFHPLPSEGAVCSLASCA-QDGSV  223 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i  223 (471)
                      ..|.+.|.+++|||||++|++++ .|+.|++|++........+   ..+...+..++|+|+++     +|++++ .++.|
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~-----~l~v~~~~~~~v  107 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ-----FVFVGSYNAGNV  107 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS-----EEEEEETTTTEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCC-----EEeecccCCCce
Confidence            46889999999999999996655 5899999998765433222   23445567899999998     566666 47789


Q ss_pred             EEEeCCCCcceeeec-CCCCcceEEEEECCCCCEEEEEeCCCe-EEec---ccc-------ccccCCCCcceEEEEECCC
Q psy11350        224 KLWSLDKDTPLANLE-GHEPFRVSRIKFHPSGRFLGTCCWDHS-WRLD---TPL-------ANLEGHEPFRVSRIKFHPS  291 (471)
Q Consensus       224 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~i~~~~~d~~-~~~~---~~~-------~~~~~~~~~~v~~l~~~~~  291 (471)
                      .+|+........... ......+.++.++|++++++.++.... +.++   ...       .............++|+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            999877665443322 122236788999999999888876543 3221   110       0111112335688999999


Q ss_pred             CCEEEEEe-cCCeEEEEECCCCc----EEEEee------CCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEE
Q psy11350        292 GRFLGTCC-WDHSWRLWDLNQGQ----EVLHQE------GHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMF  359 (471)
Q Consensus       292 ~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~------~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~  359 (471)
                      +.+++... ..+...+|+.....    ......      ........++++++++++++. ..++.+.+|++........
T Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (333)
T d1ri6a_         188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  267 (333)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE
Confidence            99877655 45678888865432    111221      123456788999999866655 5677899998876543333


Q ss_pred             e---cccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEE--CCCccc
Q psy11350        360 L---EGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWD--LRKRRL  398 (471)
Q Consensus       360 ~---~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd--~~~~~~  398 (471)
                      +   ..+...+.+++|+|||++|++++ .++.|++|+  ..+|++
T Consensus       268 ~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            2   23445678899999999887765 468899995  556654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=6.9e-16  Score=142.57  Aligned_cols=261  Identities=10%  Similarity=0.020  Sum_probs=162.7

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEe--ecCCCCEEEEEEeeCCCCCCccEE-EEEeCCCcEEEEeCCCCcceeeecCCCCc
Q psy11350        167 VATASWSGLCKLWTVPECELVQTF--RGHDCNVGAIEFHPLPSEGAVCSL-ASCAQDGSVKLWSLDKDTPLANLEGHEPF  243 (471)
Q Consensus       167 l~tg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  243 (471)
                      +++++.|++|++|++.+...+..+  ..|.+.+..|+|+|+++     +| +++..|+.|++|++........+..+.. 
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~-----~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-   80 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-----YLYVGVRPEFRVLAYRIAPDDGALTFAAESA-   80 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS-----EEEEEETTTTEEEEEEECTTTCCEEEEEEEE-
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC-----EEEEEECCCCeEEEEEEeCCCCcEEEeeecc-
Confidence            467778999999998754433322  35778899999999998     56 4555689999999876644332221110 


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEec-CCeEEEEECCCCcEEE--EeeC
Q psy11350        244 RVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRLWDLNQGQEVL--HQEG  320 (471)
Q Consensus       244 ~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~--~~~~  320 (471)
                                                         ....+..++|+|+|++|++++. ++.|.+|+........  ....
T Consensus        81 -----------------------------------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~  125 (333)
T d1ri6a_          81 -----------------------------------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE  125 (333)
T ss_dssp             -----------------------------------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred             -----------------------------------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC
Confidence                                               0224678999999999998875 6789999887765433  3445


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEEE------ecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q psy11350        321 HGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIMF------LEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWD  392 (471)
Q Consensus       321 ~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~~------~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd  392 (471)
                      +...+.++.++|+++++++++. +..|.+|+.........      ...+...+..++|++++.+++... ..+...+|+
T Consensus       126 ~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  205 (333)
T ss_dssp             CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence            6777889999999998887764 55799999876532221      123445678999999998876654 556788888


Q ss_pred             CCCccchh----eecc---cCC--CccceeeccccceeeeecccCCCcccccchhhhccc-c---cceeeecccceeeee
Q psy11350        393 LRKRRLLK----WCTQ---LLP--NSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQV-E---PIPLLLDIQKLTFKF  459 (471)
Q Consensus       393 ~~~~~~~~----~~~~---~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~fs~  459 (471)
                      +.......    .+..   ...  .......+..|....+......+...++........ .   ..........++|+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp  285 (333)
T d1ri6a_         206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH  285 (333)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred             ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC
Confidence            75433211    1111   001  112223344555444433333332222221111111 1   111223456899999


Q ss_pred             cCCeEEEee
Q psy11350        460 DSDLHAMVL  468 (471)
Q Consensus       460 dg~~lA~~~  468 (471)
                      ||++|++..
T Consensus       286 DGk~l~va~  294 (333)
T d1ri6a_         286 SGKYLIAAG  294 (333)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEEE
Confidence            999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=9.7e-17  Score=148.97  Aligned_cols=259  Identities=12%  Similarity=-0.046  Sum_probs=161.5

Q ss_pred             EEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEE-eCCCeEEecccc-----c
Q psy11350        200 IEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLDTPL-----A  273 (471)
Q Consensus       200 l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~-~~d~~~~~~~~~-----~  273 (471)
                      ++|++++.     +|++++.+++|.+||+.+++.+.++..+....+.+++|+|||++++++ ..++.+.++...     .
T Consensus         2 ~a~~~~~~-----~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHE-----YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCE-----EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCc-----EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            45677777     899999999999999999999998876555578899999999987555 466765553221     1


Q ss_pred             cccCC-----CCcceEEEEECCCCCEEEEEe------------cCCeEEEEECCCCcEEEEeeC--CCCCeEEEEEeCCC
Q psy11350        274 NLEGH-----EPFRVSRIKFHPSGRFLGTCC------------WDHSWRLWDLNQGQEVLHQEG--HGKPVYCMSFQGDG  334 (471)
Q Consensus       274 ~~~~~-----~~~~v~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~d~  334 (471)
                      .+...     ....+..++|+|+|+++++++            .++.+.+||..+++....+..  ....+..+.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            11111     012356799999999988775            367789999888765443322  23445667778888


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC--------------------------EEEEEeCCCcE
Q psy11350        335 SVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY--------------------------HLATGSEDNAV  388 (471)
Q Consensus       335 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--------------------------~l~s~s~dg~i  388 (471)
                      .+++++   +.+.+|++.+++.+..+..+. .+..+.++|++.                          .++++..++.+
T Consensus       157 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         157 SLYVAG---PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             CEEEES---SSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             EEEEeC---CcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence            766553   458999999998888776442 223333444333                          33444555668


Q ss_pred             EEEECCCccchheecccCCCccceeeccccceeeeecccCCCcccccchhhhcccccceeeecccceeeeecCCeEEEee
Q psy11350        389 KIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDVLESLNPGIGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       389 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~  468 (471)
                      .+||+.++.....................+........  .+...++.......+..+.....+..++|||||++|++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred             EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec--CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe
Confidence            88888887766544433332222222222211111111  1112223333333344444445678999999999999876


Q ss_pred             c
Q psy11350        469 N  469 (471)
Q Consensus       469 ~  469 (471)
                      .
T Consensus       311 ~  311 (346)
T d1jmxb_         311 T  311 (346)
T ss_dssp             B
T ss_pred             C
Confidence            4

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=2.1e-15  Score=141.98  Aligned_cols=247  Identities=8%  Similarity=-0.032  Sum_probs=166.3

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecCCCC-------EEEEEEeeCCCCC
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGHDCN-------VGAIEFHPLPSEG  209 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~~~-------v~~l~~~~~~~~~  209 (471)
                      ...++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+...       ...++|+|+++. 
T Consensus        61 ~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~-  137 (368)
T d1mdah_          61 HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC-  137 (368)
T ss_dssp             EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC-
T ss_pred             EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCE-
Confidence            33445444  578999999998765          3677999999999998887644321       236899999984 


Q ss_pred             CccEEEEE-eCCCcEEEEeCCCCcceeeecCCCCc------ceEEEEECCCCCEEEEEeCCCeEEeccc-cccccCCCCc
Q psy11350        210 AVCSLASC-AQDGSVKLWSLDKDTPLANLEGHEPF------RVSRIKFHPSGRFLGTCCWDHSWRLDTP-LANLEGHEPF  281 (471)
Q Consensus       210 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~i~~~~~d~~~~~~~~-~~~~~~~~~~  281 (471)
                          |+++ ..++.+.+||+.+++....+..+...      ....+.+++||..++....+........ ......+ ..
T Consensus       138 ----l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~  212 (368)
T d1mdah_         138 ----LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ-NC  212 (368)
T ss_dssp             ----EEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS-CB
T ss_pred             ----EEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc-cc
Confidence                5554 46799999999999888777654432      2234566777776666655544222111 1111222 23


Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eCC----------CCCeEEEEEeCCCCEEEEEeCC------
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGH----------GKPVYCMSFQGDGSVVATGGLD------  343 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~----------~~~v~~~~~s~d~~~l~t~~~d------  343 (471)
                      .+..+.+.+++..+.+.  .+.+.++++..+......  ..+          ......++++|++..++....+      
T Consensus       213 ~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         213 SSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            44567778877655543  466777777655433221  111          1122357889988877665322      


Q ss_pred             ---CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCccchheecc
Q psy11350        344 ---AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGY--HLATGSEDNAVKIWDLRKRRLLKWCTQ  404 (471)
Q Consensus       344 ---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~  404 (471)
                         ..|.+||..+++.+..+. +...+.+++|+|||+  .++++..|+.|++||..+++.+.++..
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             cCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence               359999999999888776 446789999999997  346777889999999999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=7.8e-14  Score=130.94  Aligned_cols=221  Identities=13%  Similarity=0.044  Sum_probs=144.2

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceEEEeecCCC---------------------
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATAS----------WSGLCKLWTVPECELVQTFRGHDC---------------------  195 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~~---------------------  195 (471)
                      .+.++..+  .++|+|||++|++++          .++.|.+||+.+++.+..+..+..                     
T Consensus        62 ~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  139 (373)
T d2madh_          62 HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             EEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence            33444433  689999999999875          357899999998887655433221                     


Q ss_pred             --------------------------CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCC-----Ccc
Q psy11350        196 --------------------------NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHE-----PFR  244 (471)
Q Consensus       196 --------------------------~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~  244 (471)
                                                ...++.++|++..    .+++.+.|+.+.+|+...+..........     ...
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~----~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (373)
T d2madh_         140 LFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPS----TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             EEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCc----EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccce
Confidence                                      1224445555543    46778888888899887776555443211     112


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEe---ccc----ccccc---------CCCCcceEEEEECCCCCEEE----------EE
Q psy11350        245 VSRIKFHPSGRFLGTCCWDHSWRL---DTP----LANLE---------GHEPFRVSRIKFHPSGRFLG----------TC  298 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~~d~~~~~---~~~----~~~~~---------~~~~~~v~~l~~~~~~~~l~----------~~  298 (471)
                      ...+.+.+++.+++.+ .++.+..   ...    .....         ...+.....+++++++..++          +.
T Consensus       216 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  294 (373)
T d2madh_         216 TQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             eeeEEECCCceEEEec-CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEee
Confidence            3344555555554433 3333221   100    00000         00112234556666665443          45


Q ss_pred             ecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        299 CWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS--VVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       299 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ..++.+.+||..+++.+..+. +...+.+++|+|||+  ++++++.|+.|+|||+.+++.+.++..+....+.+++.++
T Consensus       295 ~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         295 AAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             cCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            566789999999999888765 667789999999998  4568889999999999999999999988888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=1.3e-14  Score=135.35  Aligned_cols=269  Identities=11%  Similarity=-0.051  Sum_probs=170.2

Q ss_pred             EEEEEecCCCEEEEEe-----CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEE----------EeCC
Q psy11350        156 SYCSFSPDSQHVATAS-----WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS----------CAQD  220 (471)
Q Consensus       156 ~~~~~s~~~~~l~tg~-----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s----------~~~d  220 (471)
                      .-.+.+|||+++++..     .++.|.+||..+++.+.++..+..+  .++|+|+++.     |++          ++.|
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~-----l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSF-----IAHASTVFSRIARGERT   77 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC-----EEEEEEEEEETTEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCE-----EEEEeCCCccccccCCC
Confidence            3335689999988764     3557999999999999998876554  7999999983     443          3457


Q ss_pred             CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe-
Q psy11350        221 GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC-  299 (471)
Q Consensus       221 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-  299 (471)
                      +.|.+||+.+++.+..+..+...                             ....   ......++|+|+++++++++ 
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~-----------------------------~~~~---~~~~~~~~~s~dg~~~~v~~~  125 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAP-----------------------------RFLV---GTYPWMTSLTPDGKTLLFYQF  125 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCC-----------------------------CCCB---SCCGGGEEECTTSSEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEecCCcc-----------------------------eeec---CCCCceEEEecCCCeeEEecC
Confidence            89999999999877765533220                             0000   11244688999999887765 


Q ss_pred             -cCCeEEEEECCCCcEEEEeeCCCCC-------eEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeEEEecccCcCEEEE
Q psy11350        300 -WDHSWRLWDLNQGQEVLHQEGHGKP-------VYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCIMFLEGHLKSVFSV  370 (471)
Q Consensus       300 -~dg~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  370 (471)
                       .+..+.+|+..+++.+..+..+...       ...+.+++|+..++... .++.+.+++......     .+...+...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  200 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHP  200 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCC
T ss_pred             CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeec
Confidence             4568999999999888776654322       23455666665554432 334444454433321     233445566


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCccchheec-----------ccCCCccceeeccccceeeeecccCCC---------
Q psy11350        371 DFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT-----------QLLPNSIGVTSLLTDLYIDVLESLNPG---------  430 (471)
Q Consensus       371 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~d~~~~~~~~~~~~---------  430 (471)
                      .+++++..++.++.++.+++|++..++....-.           ...+.....+.+..+....++......         
T Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             cccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            788888999999999999999998876432111           111223334555555554444332221         


Q ss_pred             cccccchhhhcccccceeeecccceeeeecCCeEEEee
Q psy11350        431 IGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~~  468 (471)
                      ...++.......+..++.......++|+|||+.+.+++
T Consensus       281 ~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred             eEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence            11233333344445555656678999999998654443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=4.1e-13  Score=126.19  Aligned_cols=223  Identities=10%  Similarity=-0.012  Sum_probs=149.3

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeec------------------------------CCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        167 VATASWSGLCKLWTVPECELVQTFRG------------------------------HDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       167 l~tg~~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      +++|+.+|.|.+|++.+++.+..+..                              |..........|+|..    ++++
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~----lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY----LFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE----EEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE----EEEE
Confidence            56788899999999999988877532                              2233444555788873    4566


Q ss_pred             EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC--EEEEEeCCCeE--------------------Eecccccc
Q psy11350        217 CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR--FLGTCCWDHSW--------------------RLDTPLAN  274 (471)
Q Consensus       217 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~i~~~~~d~~~--------------------~~~~~~~~  274 (471)
                      ...++.|.++|+.+++....+.......+..++|+|+|+  +++..+.+..-                    +..+....
T Consensus        90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            668899999999999988877765555899999999999  44444433220                    00000000


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEEecC-----------------------------------------CeEEEEECCCCc
Q psy11350        275 LEGHEPFRVSRIKFHPSGRFLGTCCWD-----------------------------------------HSWRLWDLNQGQ  313 (471)
Q Consensus       275 ~~~~~~~~v~~l~~~~~~~~l~~~~~d-----------------------------------------g~i~iwd~~~~~  313 (471)
                      ...........+.|+|+|+++++++.+                                         +.+.+++....+
T Consensus       170 ~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         170 WQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            000012246689999999998887654                                         234444444445


Q ss_pred             EEEEeeCCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCee-----------EEEecccCcCEEEEEEcCCCCEEEE
Q psy11350        314 EVLHQEGHGKPVYCMSFQGDGSVVA-TGGLDAFGRVWDLRTGRC-----------IMFLEGHLKSVFSVDFSPDGYHLAT  381 (471)
Q Consensus       314 ~~~~~~~~~~~v~~~~~s~d~~~l~-t~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~l~s  381 (471)
                      .+..+..... ...+.++|||++++ ++..+++|.|||+.+...           +.......-.....+|.++|+.+.+
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            5555555444 46799999999765 567899999999865221           1111111123456789999998899


Q ss_pred             EeCCCcEEEEECC
Q psy11350        382 GSEDNAVKIWDLR  394 (471)
Q Consensus       382 ~s~dg~i~iwd~~  394 (471)
                      ...|..|..|++.
T Consensus       329 ~~~ds~v~kw~~~  341 (441)
T d1qnia2         329 LFIDSQVCKWNIA  341 (441)
T ss_dssp             ETTTTEEEEEEHH
T ss_pred             ccccceEEEeccc
Confidence            9999999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=1.8e-12  Score=125.82  Aligned_cols=137  Identities=11%  Similarity=0.073  Sum_probs=97.3

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec-----CCCCEEEEEEeeCCCCCCccEEEEEe---------CCCc
Q psy11350        157 YCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG-----HDCNVGAIEFHPLPSEGAVCSLASCA---------QDGS  222 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~l~s~~---------~dg~  222 (471)
                      .+.|.++++++..  .++.|.+||+.+++....+..     |...|.++.|+|++.     +|+.++         .++.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-----~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-----FILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-----EEEEEEEEEECSSSCEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-----EEEEEECCcceeeeccCce
Confidence            4679999987764  478999999999988765543     457799999999998     577664         3577


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc----cccccCC-----------------CCc
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP----LANLEGH-----------------EPF  281 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~----~~~~~~~-----------------~~~  281 (471)
                      +.+||+.+++. ..+..+.. .+..+.|||||+.|+.......+.....    .......                 ...
T Consensus        94 ~~l~d~~~~~~-~~l~~~~~-~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          94 YDIYDLNKRQL-ITEERIPN-NTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EEEEETTTTEE-CCSSCCCT-TEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEEECCCCcc-cccccCCc-cccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            89999988764 44555544 7899999999999999776544333111    1111100                 112


Q ss_pred             ceEEEEECCCCCEEEEEecCC
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      ....+.|+|||++|+....|.
T Consensus       172 ~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEEEC
T ss_pred             CccccEECCCCCccceeEecC
Confidence            345688999999999887653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=1.2e-12  Score=126.92  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             eeecCCcCeEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE
Q psy11350        147 SQVGDTRPISYCSFSPDSQHVATASW---------SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC  217 (471)
Q Consensus       147 ~~~gh~~~V~~~~~s~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  217 (471)
                      .+.+|...|.++.|||||++|+.++.         ++.+.|||+.+++ +..+..|...+..+.|+|++.     .++..
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~-----~ia~~  129 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH-----KLAYV  129 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTT-----CEEEE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcc-----eeeEe
Confidence            34467788999999999999998753         5788999999876 455778889999999999999     46664


Q ss_pred             eCCCcEEEEeCCCCcceeeecCCCC-----------------cceEEEEECCCCCEEEEEeCC
Q psy11350        218 AQDGSVKLWSLDKDTPLANLEGHEP-----------------FRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       218 ~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~v~~~~~s~~~~~i~~~~~d  263 (471)
                       .++.+.+|+..++...........                 .....+.|+|||++|++...|
T Consensus       130 -~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         130 -WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             -ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             -ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence             578999999988876654432221                 124567899999999988654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=2.2e-12  Score=121.09  Aligned_cols=229  Identities=10%  Similarity=0.107  Sum_probs=155.7

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEee-cCCCCEEEEEEeeCCCCCCccEEEEEeCCCc-----
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFR-GHDCNVGAIEFHPLPSEGAVCSLASCAQDGS-----  222 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-----  222 (471)
                      .|.-.+....++|||++|++.. .++.|.++|+.+++....+. .+...+..++|+|+++.    ..+++.....     
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----~YV~~~~~~~v~~~~  144 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----NYVFCNAEFVIPQPN  144 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----CEEEEEECSCEESSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----EEEEeccCCcccccC
Confidence            4666677777899999997665 67899999999999888776 35678999999998873    2333333333     


Q ss_pred             -------------EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe---------------EEec-----
Q psy11350        223 -------------VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS---------------WRLD-----  269 (471)
Q Consensus       223 -------------i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~---------------~~~~-----  269 (471)
                                   +..+|..+.+....+....  ....+.++|+|+++++.+.+..               +.+.     
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTTCSEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             cccccccccccceEEeecCccceeeEEEecCC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                         3457877777666655433  5788999999999998876532               0000     


Q ss_pred             --------------ccccccc----------CCCCcceEEEEECCCCCEEE-EEecCCeEEEEECCCCcE----------
Q psy11350        270 --------------TPLANLE----------GHEPFRVSRIKFHPSGRFLG-TCCWDHSWRLWDLNQGQE----------  314 (471)
Q Consensus       270 --------------~~~~~~~----------~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~----------  314 (471)
                                    .....+.          -........+.++|||++++ ++..+++|.+||+.+...          
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence                          0000000          00112356799999999875 467789999999875321          


Q ss_pred             -EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---------C-eeEEEe-----cccCcCEEEEEEcCCCCE
Q psy11350        315 -VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT---------G-RCIMFL-----EGHLKSVFSVDFSPDGYH  378 (471)
Q Consensus       315 -~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~---------~-~~~~~~-----~~h~~~v~~~~~sp~~~~  378 (471)
                       +.......-.....+|+++|..+.+...|..|..|++..         . ..+..+     .+|...+.+..++|||++
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~  382 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW  382 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred             EEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcE
Confidence             111111222345568999998888899999999999741         1 233333     467777777889999999


Q ss_pred             EEEEeC
Q psy11350        379 LATGSE  384 (471)
Q Consensus       379 l~s~s~  384 (471)
                      |++++.
T Consensus       383 l~s~~k  388 (441)
T d1qnia2         383 LVVLSK  388 (441)
T ss_dssp             EEEEES
T ss_pred             EEecCc
Confidence            999953

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=4e-12  Score=119.09  Aligned_cols=273  Identities=11%  Similarity=-0.055  Sum_probs=164.3

Q ss_pred             CCcCeEEEEEecCCCEEEE---EeCCC--cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEe-------
Q psy11350        151 DTRPISYCSFSPDSQHVAT---ASWSG--LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCA-------  218 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~t---g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-------  218 (471)
                      +.++...++..++++....   ...+|  .|.+||..+++.+..+..+..+  .++|+|++.     .|++.+       
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~-----~i~~~~~~~~~~~   90 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGS-----DFALASTSFARSA   90 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSS-----CEEEEEEEETTTT
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCC-----EEEEEcccCcccc
Confidence            4555555567888886432   23344  4777799999999988877655  589999998     355433       


Q ss_pred             ---CCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEE
Q psy11350        219 ---QDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       219 ---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                         .|+.|.+||..+++++..+..+...                             ....+   .....++|+|||++|
T Consensus        91 ~g~~d~~v~v~D~~t~~~~~~i~~p~~~-----------------------------~~~~g---~~p~~~a~SpDGk~l  138 (368)
T d1mdah_          91 KGKRTDYVEVFDPVTFLPIADIELPDAP-----------------------------RFSVG---PRVHIIGNCASSACL  138 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEEETTSC-----------------------------SCCBS---CCTTSEEECTTSSCE
T ss_pred             ccccCCeEEEEECCCCcEeeeecCCccc-----------------------------eeccc---CCccceEECCCCCEE
Confidence               4778999999999887776543320                             00011   123468999999999


Q ss_pred             EEEe-cCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE------ecccCcCEE
Q psy11350        296 GTCC-WDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF------LEGHLKSVF  368 (471)
Q Consensus       296 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~------~~~h~~~v~  368 (471)
                      +++. .++.+.+||+.+++.+..+..+.....   +......+++.+.||.+.+|++........      +..+...+.
T Consensus       139 ~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             EEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             EEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccccee
Confidence            8876 469999999999998888776554321   112334666777788888887765432221      223445556


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCccchheec-----------ccCCCccceeeccccceeeeecccCCC-------
Q psy11350        369 SVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCT-----------QLLPNSIGVTSLLTDLYIDVLESLNPG-------  430 (471)
Q Consensus       369 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~d~~~~~~~~~~~~-------  430 (471)
                      .+.+.+++..+.+.  .+.+.++++..+.......           ...+.....+++..+....++......       
T Consensus       216 ~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~  293 (368)
T d1mdah_         216 AAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             CEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             ecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCC
Confidence            67788877666544  4456666665544332111           111222233444444433332221111       


Q ss_pred             -cccccchhhhcccccceeeecccceeeeecCCeEEEe
Q psy11350        431 -IGNIISSALKEQVEPIPLLLDIQKLTFKFDSDLHAMV  467 (471)
Q Consensus       431 -~~~~~~~~~~~~~~~~~~~~~~~~l~fs~dg~~lA~~  467 (471)
                       ...++.......+..++.......++|||||+.++.+
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred             ceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEE
Confidence             1112333333444555555667889999999865443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=9.4e-10  Score=97.22  Aligned_cols=235  Identities=8%  Similarity=-0.066  Sum_probs=149.8

Q ss_pred             CcCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCC
Q psy11350        152 TRPISYCSFSPDSQHVATA-SWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDK  230 (471)
Q Consensus       152 ~~~V~~~~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  230 (471)
                      ...-..++++++|+..++. +..+.+..++............-......+++.+++.     ++++....+.+++++-.+
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-----i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-----VYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-----EEEEETTTEEEEECTTCS
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-----EEEeeeeeceeeeeeecc
Confidence            3456899999999976654 4457777777554332222212123456889999886     566666666666665444


Q ss_pred             CcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---c-ccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        231 DTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---L-ANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       231 ~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      ...+.....  ......+++.++++++++-.....+.....   . ............++++.|+++.+++...++.|..
T Consensus        88 ~~~~~~~~~--~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          88 NQTVLPFDG--LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CCEECCCCS--CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred             ceeeeeeee--eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc
Confidence            433322222  236789999999988776554444322111   1 1111111224578999999998888888899999


Q ss_pred             EECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCC
Q psy11350        307 WDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDN  386 (471)
Q Consensus       307 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  386 (471)
                      +|...................+++.++|+++++....+.|..++.............-.....|+++++|.++++-..++
T Consensus       166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred             cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence            99876554443334456678999999999988888888899888655432222223335688999999999888767777


Q ss_pred             cEEEEEC
Q psy11350        387 AVKIWDL  393 (471)
Q Consensus       387 ~i~iwd~  393 (471)
                      .|+.++.
T Consensus       246 rI~~i~~  252 (260)
T d1rwia_         246 RVVKLTS  252 (260)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            6665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=1.8e-08  Score=89.75  Aligned_cols=237  Identities=9%  Similarity=0.090  Sum_probs=164.7

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeec------CCCCEEEEEEeeCCCCCCccEEE-EEeCCCcEEEE
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRG------HDCNVGAIEFHPLPSEGAVCSLA-SCAQDGSVKLW  226 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iw  226 (471)
                      ....++++|+|+.+++-..++.|++||. +|+.+..+..      .......+++.++...    .++ ..+.++.|..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD----IIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTE----EEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccc----cceeccCCccccccc
Confidence            4688999999998887777899999995 5777766632      1123445666555432    233 33455677778


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccc----cc-cCCCCcceEEEEECCCCCEEEEEecC
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLA----NL-EGHEPFRVSRIKFHPSGRFLGTCCWD  301 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~----~~-~~~~~~~v~~l~~~~~~~~l~~~~~d  301 (471)
                      +. .+.....+..........+++.++|.++++....+.+....+..    .+ ..........+++.++++.+++....
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccc
Confidence            75 56666666555444788999999999888776666544322211    11 01113357889999999988888888


Q ss_pred             CeEEEEECCCCcEEEEee--CCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCeeEEEecc--cCcCEEEEEEcCCC
Q psy11350        302 HSWRLWDLNQGQEVLHQE--GHGKPVYCMSFQGDGSVVATGGL-DAFGRVWDLRTGRCIMFLEG--HLKSVFSVDFSPDG  376 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~sp~~  376 (471)
                      +.|++||.. ++.+..+-  +.......|++.++|+++++-.. ++.|.+|+ .+|+.+.++..  .......|++.|+|
T Consensus       178 ~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         178 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             cceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            999999974 56666653  34456789999999998777544 45799998 56887766643  23468899999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccch
Q psy11350        377 YHLATGSEDNAVKIWDLRKRRLL  399 (471)
Q Consensus       377 ~~l~s~s~dg~i~iwd~~~~~~~  399 (471)
                      .+++ ++.++.|++|...+..++
T Consensus       256 ~l~V-~~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         256 SVVL-ASKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             EEEE-EETTTEEEEEECSCCCCT
T ss_pred             cEEE-EeCCCeEEEEEeeeecCC
Confidence            7555 557899999999876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1e-08  Score=90.56  Aligned_cols=217  Identities=13%  Similarity=0.081  Sum_probs=136.1

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSG---LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      .+...+.+.+|||||+.||......   .+.+.+..++... .+..+........|+|++..    +++....++...++
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~----i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK----LAFALSKTGSLNLY  110 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE----EEEEECTTSSCEEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCe----eeEeeecCCcccee
Confidence            3566778899999999999765433   4777776665543 44566788899999999983    33334344444444


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeC-CCeEEe-----cccc-ccccCCCCcceEEEEECCCCCEEEEEe
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-DHSWRL-----DTPL-ANLEGHEPFRVSRIKFHPSGRFLGTCC  299 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-d~~~~~-----~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~  299 (471)
                      .......................+++++..++..+. ++...+     .... ..+... ........|+|+++.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEEEEECTTSSEEEEEE
T ss_pred             ecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecc-cccccccccccccceeEEEe
Confidence            332222222222222224556678888876665543 343222     1111 112222 44577789999999888776


Q ss_pred             cCC---eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCeeEEEecccCcCEEEEEEc
Q psy11350        300 WDH---SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL---DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS  373 (471)
Q Consensus       300 ~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  373 (471)
                      .++   .|.+.+...+..  ....+........|+|||+.|+-.+.   ...|+++++..+.. ..+....+.+...+||
T Consensus       190 ~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WS  266 (269)
T d2hqsa1         190 SNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWS  266 (269)
T ss_dssp             ECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEEC
T ss_pred             ecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeC
Confidence            654   455556655543  33445566778899999998875543   34689999976654 4566667788899999


Q ss_pred             CC
Q psy11350        374 PD  375 (471)
Q Consensus       374 p~  375 (471)
                      |-
T Consensus       267 P~  268 (269)
T d2hqsa1         267 PY  268 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=1.3e-09  Score=101.29  Aligned_cols=243  Identities=12%  Similarity=0.106  Sum_probs=140.6

Q ss_pred             cCCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceEEEe-ecCCCCEEEEEEeeCCCCCCccEEEEEe--CCCcEEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATASWSGLCKLWTVPE-CELVQTF-RGHDCNVGAIEFHPLPSEGAVCSLASCA--QDGSVKL  225 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~--~dg~i~i  225 (471)
                      .+..+++-|+|+|++++|+++. .+.+..|.+.. +...... .........+.+++++..    .+++..  ..++|..
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~----~~v~~a~~~~~~v~~  111 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRA----IFLLAAKQPPYAVYA  111 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEE----EEEEECSSTTCCEEE
T ss_pred             cCCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCE----EEEEEecCCCCEEEE
Confidence            4555677899999999998887 46677776653 2222211 111222335556666541    122221  2244444


Q ss_pred             EeCC------------CC-c---ceeeecCCCCcceEEEEECCCCCEEEEEeCCC--eEEec--ccc-----cc-ccCCC
Q psy11350        226 WSLD------------KD-T---PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH--SWRLD--TPL-----AN-LEGHE  279 (471)
Q Consensus       226 wd~~------------~~-~---~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~--~~~~~--~~~-----~~-~~~~~  279 (471)
                      +.+.            .. .   ............+.++.|+|+|++++++....  .+.+.  ...     .. .....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T d1jofa_         112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             eEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC
Confidence            3321            11 1   11111122233578999999999998886432  22221  110     01 11112


Q ss_pred             CcceEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEE--Eee-----------------CCCCCeEEEEEeCCCCEEEE
Q psy11350        280 PFRVSRIKFHPSGRFLGTCC-WDHSWRLWDLNQGQEVL--HQE-----------------GHGKPVYCMSFQGDGSVVAT  339 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~-----------------~~~~~v~~~~~s~d~~~l~t  339 (471)
                      ......++|+|+++++++.. .+++|.+|++...+...  ...                 .+......+.++|||++|++
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            34688999999999886655 57899999987654321  110                 11123567899999999888


Q ss_pred             EeC------CCeEEEEeCCCCeeEEE------ecccCcCEEEEEEcC-CCCEEEEE-eCCCcEEEEECCCcc
Q psy11350        340 GGL------DAFGRVWDLRTGRCIMF------LEGHLKSVFSVDFSP-DGYHLATG-SEDNAVKIWDLRKRR  397 (471)
Q Consensus       340 ~~~------dg~i~iwd~~~~~~~~~------~~~h~~~v~~~~~sp-~~~~l~s~-s~dg~i~iwd~~~~~  397 (471)
                      +..      .+.|..|++.....+..      .........+++++| +|++|+++ ..++.|.+|+++...
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            743      23477777754322211      112334567899998 78987766 467899999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.17  E-value=2.2e-08  Score=90.65  Aligned_cols=237  Identities=13%  Similarity=0.056  Sum_probs=153.7

Q ss_pred             cCeEEEEEecCCCEEEEEeC-------CCcEEEEeCCCCceEEEeecC----CCCEEEEEEeeCCCCCCccEEEEEeCCC
Q psy11350        153 RPISYCSFSPDSQHVATASW-------SGLCKLWTVPECELVQTFRGH----DCNVGAIEFHPLPSEGAVCSLASCAQDG  221 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~-------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~l~s~~~dg  221 (471)
                      .....++|.|+|+++++...       +|.|..||..++.........    .+.-..+.|.+++.     .++++...+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-----~l~vad~~~   92 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-----QLFVADMRL   92 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-----EEEEEETTT
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-----EEEEEECCC
Confidence            34567799999998776432       467999998887654433221    12356899999987     577777777


Q ss_pred             cEEEEeCCCCcceeeecCCC---CcceEEEEECCCCCEEEEEeCCC---------------e-EEeccc--cccccCCCC
Q psy11350        222 SVKLWSLDKDTPLANLEGHE---PFRVSRIKFHPSGRFLGTCCWDH---------------S-WRLDTP--LANLEGHEP  280 (471)
Q Consensus       222 ~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~i~~~~~d~---------------~-~~~~~~--~~~~~~~~~  280 (471)
                      .|...+.+.+..........   -...+.+++.++|.+.++-....               . +++...  ...+... -
T Consensus        93 ~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~-~  171 (314)
T d1pjxa_          93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA-F  171 (314)
T ss_dssp             EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE-E
T ss_pred             eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCC-c
Confidence            78888876543222111111   11357899999999887643211               1 121110  0001111 1


Q ss_pred             cceEEEEECCCCC----EE-EEEecCCeEEEEECCCCcEEE------EeeC-CCCCeEEEEEeCCCCEEEEEeCCCeEEE
Q psy11350        281 FRVSRIKFHPSGR----FL-GTCCWDHSWRLWDLNQGQEVL------HQEG-HGKPVYCMSFQGDGSVVATGGLDAFGRV  348 (471)
Q Consensus       281 ~~v~~l~~~~~~~----~l-~~~~~dg~i~iwd~~~~~~~~------~~~~-~~~~v~~~~~s~d~~~l~t~~~dg~i~i  348 (471)
                      ...+.++|+|++.    .| ++-+..+.|..||+.....+.      .+.+ +......+++.++|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            1245788988764    34 444667889999876443222      1222 2233567999999999888888899999


Q ss_pred             EeCCCCeeEEEecccCcCEEEEEEcCCCCE-EEEEeCCCcEEEEECCC
Q psy11350        349 WDLRTGRCIMFLEGHLKSVFSVDFSPDGYH-LATGSEDNAVKIWDLRK  395 (471)
Q Consensus       349 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~s~s~dg~i~iwd~~~  395 (471)
                      ||.+.+..+..+..+...+++++|.|+++. +++.+.+|.|...++..
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            998888777777666678999999999874 56667778888888653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.15  E-value=1.2e-08  Score=91.96  Aligned_cols=224  Identities=12%  Similarity=-0.011  Sum_probs=148.0

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-  232 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-  232 (471)
                      .+..++++|||+++++...+++|+.|+.. ++. ..+......+.+++|.+++.     ++++...++.+..|+..... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~-----l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGD-----LVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSC-----EEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCC-----eEEEecCCceEEEEEeccccc
Confidence            57889999999999999999999999854 443 33445567899999999998     77888788888888765432 


Q ss_pred             -ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeE-Eec-----------cc--cccccCCCCcceEEEEECCCCCEEEE
Q psy11350        233 -PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSW-RLD-----------TP--LANLEGHEPFRVSRIKFHPSGRFLGT  297 (471)
Q Consensus       233 -~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~-~~~-----------~~--~~~~~~~~~~~v~~l~~~~~~~~l~~  297 (471)
                       ...............+++.++++++++.+..+.+ .+.           ..  ..............+.+.. +..+++
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~  180 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS  180 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence             2222222333468899999999988877666552 221           00  0001111122355666653 345556


Q ss_pred             EecCCeEEEEECCCCcEEEE--eeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCe-eEEEecccCcCEEEEEE--
Q psy11350        298 CCWDHSWRLWDLNQGQEVLH--QEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGR-CIMFLEGHLKSVFSVDF--  372 (471)
Q Consensus       298 ~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~--  372 (471)
                      .+..+.|..++.........  ..........++|+++|+++++...++.|..++..... .+.........+++++|  
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcC
Confidence            67788899998765432211  11122334579999999988888889999999865432 22333334456899999  


Q ss_pred             -cCCCCEEEEEeCC
Q psy11350        373 -SPDGYHLATGSED  385 (471)
Q Consensus       373 -sp~~~~l~s~s~d  385 (471)
                       ++|++.|+.++..
T Consensus       261 ~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         261 TEGDCTAIYVVTNG  274 (302)
T ss_dssp             STTTTTEEEEEECT
T ss_pred             CCCCCCEEEEECCC
Confidence             6788888776554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=1.3e-07  Score=85.67  Aligned_cols=227  Identities=13%  Similarity=0.078  Sum_probs=150.3

Q ss_pred             CCcCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC----CCcEEEE
Q psy11350        151 DTRPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ----DGSVKLW  226 (471)
Q Consensus       151 h~~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~----dg~i~iw  226 (471)
                      ....+..++|.++|++.++-...+.|+.|+..+.+....+.........+++.+++.     ++++...    .+.+...
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-----l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-----LFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-----EEEEECTTSSSCCEEEEE
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-----EEEEecCCCccceeEEEE
Confidence            344567899999999777777889999999887776666666667789999999987     4554332    2345555


Q ss_pred             eCCCCcceeeecC-CCCcceEEEEECCCCCEEEEEeCCC-------eEEeccc---cccccCCCCcceEEEEECCCCCEE
Q psy11350        227 SLDKDTPLANLEG-HEPFRVSRIKFHPSGRFLGTCCWDH-------SWRLDTP---LANLEGHEPFRVSRIKFHPSGRFL  295 (471)
Q Consensus       227 d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~i~~~~~d~-------~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l  295 (471)
                      +...+........ ........+.+.++|++.++.....       .+++...   ...+... -.....++|+|+++.|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~-~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVL  191 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEE
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec-cceeeeeeeccccceE
Confidence            6555544333322 2233678999999998766643221       1222111   1111111 1235789999999876


Q ss_pred             EEE-ecCCeEEEEECCCC-cEEE-------EeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEec-----
Q psy11350        296 GTC-CWDHSWRLWDLNQG-QEVL-------HQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLE-----  361 (471)
Q Consensus       296 ~~~-~~dg~i~iwd~~~~-~~~~-------~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~-----  361 (471)
                      +++ +..+.|..||+... ....       ...........+++.++|++.++....+.|.+||. .|+.+..+.     
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~  270 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD  270 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence            555 56789999998643 1111       11111223567999999999888888999999995 788877764     


Q ss_pred             -ccCcCEEEEEEcCCCCEEEEEeC
Q psy11350        362 -GHLKSVFSVDFSPDGYHLATGSE  384 (471)
Q Consensus       362 -~h~~~v~~~~~sp~~~~l~s~s~  384 (471)
                       ++...+++++|.|++..+++.+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcCceeeeEEEeCCCCEEEEEcC
Confidence             33446889999998777766553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.5e-07  Score=82.79  Aligned_cols=214  Identities=12%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             cEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeC-CC--cEEEEeCCCCcceeeecCCCCcceEEEEEC
Q psy11350        175 LCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQ-DG--SVKLWSLDKDTPLANLEGHEPFRVSRIKFH  251 (471)
Q Consensus       175 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s  251 (471)
                      .|+|.|...... ..+..+...+...+|+|+|+     .||.... .+  .+.+.+...+....... ... ......|+
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk-----~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~s   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGS-----KLAYVTFESGRSALVIQTLANGAVRQVAS-FPR-HNGAPAFS   91 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSS-----EEEEEECTTSSCEEEEEETTTCCEEEEEC-CSS-CEEEEEEC
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCC-----EEEEEEeeccCcceeeeecccCceeEEee-eec-ccccceec
Confidence            577778654444 44444567788999999999     4655433 33  35556665554433333 222 67889999


Q ss_pred             CCCCEEEEEeCCCe----EEec--cccccccCCCCcceEEEEECCCCCEEEEEe-cCC--eEEEEECCCCcEEEEeeCCC
Q psy11350        252 PSGRFLGTCCWDHS----WRLD--TPLANLEGHEPFRVSRIKFHPSGRFLGTCC-WDH--SWRLWDLNQGQEVLHQEGHG  322 (471)
Q Consensus       252 ~~~~~i~~~~~d~~----~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~  322 (471)
                      |+|+.++.......    +...  ..................+++++..++..+ .+|  .|.+.++..+.. ..+..+.
T Consensus        92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~  170 (269)
T d2hqsa1          92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEG  170 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSS
T ss_pred             CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccc
Confidence            99999988765432    1111  111111111123345566777777555443 444  466677766543 3334456


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCc
Q psy11350        323 KPVYCMSFQGDGSVVATGGLDA---FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSE---DNAVKIWDLRKR  396 (471)
Q Consensus       323 ~~v~~~~~s~d~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~  396 (471)
                      .......|+|+++.++..+.++   .+.+.+...+..  .+..+........|||||+.|+..+.   ...|.++++..+
T Consensus       171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            6777889999999888776544   455556555543  33335566778899999998875543   346889999876


Q ss_pred             cch
Q psy11350        397 RLL  399 (471)
Q Consensus       397 ~~~  399 (471)
                      ...
T Consensus       249 ~~~  251 (269)
T d2hqsa1         249 FKA  251 (269)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.01  E-value=9.9e-08  Score=88.32  Aligned_cols=225  Identities=10%  Similarity=0.024  Sum_probs=127.5

Q ss_pred             EEEEEeC--CCcEEEEe--CCCCceE--EEe-ecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCc-ceeee
Q psy11350        166 HVATASW--SGLCKLWT--VPECELV--QTF-RGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDT-PLANL  237 (471)
Q Consensus       166 ~l~tg~~--dg~i~iwd--~~~~~~~--~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~  237 (471)
                      .|++|++  ++.|+++.  .++++..  ... ......+.-|+|+|+++     .|++... +.+..|.+.... .....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~-----~ly~~~~-~~~~~~~i~~~~~~~~~~   77 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-----NIYGAAM-KKWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-----EEEEEEB-TEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCC-----EEEEEeC-CcEEEEEEeCCCCeEEEe
Confidence            3566654  45665544  4444432  221 12345566799999998     5666554 667888765432 22211


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEeC--C-CeEEe---------------------ccccccccCCCCcceEEEEECCCCC
Q psy11350        238 EGHEPFRVSRIKFHPSGRFLGTCCW--D-HSWRL---------------------DTPLANLEGHEPFRVSRIKFHPSGR  293 (471)
Q Consensus       238 ~~~~~~~v~~~~~s~~~~~i~~~~~--d-~~~~~---------------------~~~~~~~~~~~~~~v~~l~~~~~~~  293 (471)
                      ..........+.++++++.+++...  . +.+..                     ..............+.++.|+|+|+
T Consensus        78 ~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~  157 (365)
T d1jofa_          78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             eecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCC
Confidence            1111224456677778774433221  1 11110                     0001111111122478999999999


Q ss_pred             EEEEEec-CCeEEEEECCCCcEEE---Ee--eCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCeeE--EE---ec
Q psy11350        294 FLGTCCW-DHSWRLWDLNQGQEVL---HQ--EGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGRCI--MF---LE  361 (471)
Q Consensus       294 ~l~~~~~-dg~i~iwd~~~~~~~~---~~--~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~~~--~~---~~  361 (471)
                      ++++++. ...|.+|+......+.   ..  .........++|+|+++++++.. .++.|.+|++..++..  ..   +.
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            8888765 3578888765432221   11  23456788999999999876554 6889999998765322  11   10


Q ss_pred             --------------ccCcCEEEEEEcCCCCEEEEEeC-C-----CcEEEEECCCc
Q psy11350        362 --------------GHLKSVFSVDFSPDGYHLATGSE-D-----NAVKIWDLRKR  396 (471)
Q Consensus       362 --------------~h~~~v~~~~~sp~~~~l~s~s~-d-----g~i~iwd~~~~  396 (471)
                                    .+......+.++|+|++|+++.. +     +.|..|++...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             cccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence                          11224668899999999987642 1     23767776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=1.1e-07  Score=83.44  Aligned_cols=195  Identities=8%  Similarity=-0.037  Sum_probs=129.1

Q ss_pred             CEEEEEEeeCCCCCCccEEEE-EeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc---
Q psy11350        196 NVGAIEFHPLPSEGAVCSLAS-CAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP---  271 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~---  271 (471)
                      .-..|++.+++.     ++++ .+..+.+..++........ +..........++++++|..+++....+.+.+...   
T Consensus        15 ~P~~vavd~dG~-----i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          15 SPSGVAVDSAGN-----VYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CEEEEEECTTCC-----EEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCEEEEcCCCC-----EEEEEcCCCCEEEEEcCCCceEEE-eccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            457999999887     4444 4455777777754433222 22222225678899999998777666666554321   


Q ss_pred             cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy11350        272 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDL  351 (471)
Q Consensus       272 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~  351 (471)
                      .............++++.++++++++-..+..+..++..................+++++++++++++...++.|..+|.
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            11111111235789999999998877777777888887654433222222344578999999999888888899999998


Q ss_pred             CCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy11350        352 RTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKR  396 (471)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~  396 (471)
                      ..................|++.++|+++++....+.|..++....
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            765544333345567899999999998888888888888876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.1e-08  Score=93.28  Aligned_cols=301  Identities=13%  Similarity=0.034  Sum_probs=161.8

Q ss_pred             CeEEEEEecCCCEEEEEe---------CCCcEEEEeCCCCceEEEee--cCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        154 PISYCSFSPDSQHVATAS---------WSGLCKLWTVPECELVQTFR--GHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      .+....||||+++|+.+.         ..+.+.+||+.++.......  .....+....|+|++..     +|-.. ++.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~-----iafv~-~~n  135 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQ-----LIFIF-ENN  135 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTC-----EEEEE-TTE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCce-----EEEEe-cce
Confidence            566778999999988764         35789999999887554322  23345566899999984     55543 678


Q ss_pred             EEEEeCCCCcceeeecCCCCcc-----------------eEEEEECCCCCEEEEEeCCCe----EEeccccccccCCCCc
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFR-----------------VSRIKFHPSGRFLGTCCWDHS----WRLDTPLANLEGHEPF  281 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~-----------------v~~~~~s~~~~~i~~~~~d~~----~~~~~~~~~~~~~~~~  281 (471)
                      |.+.+..++..+..........                 -..+.|||||++|+....|..    +.+....    .....
T Consensus       136 l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~----~~~~p  211 (465)
T d1xfda1         136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT----GSIYP  211 (465)
T ss_dssp             EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS----SSSSC
T ss_pred             EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc----ccccc
Confidence            8888887766555443222111                 246789999999999865533    2221110    11011


Q ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee------CCCCCeEEEEEeCCCCEEEEEeC-C---CeEEEEeC
Q psy11350        282 RVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE------GHGKPVYCMSFQGDGSVVATGGL-D---AFGRVWDL  351 (471)
Q Consensus       282 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~d~~~l~t~~~-d---g~i~iwd~  351 (471)
                      .+..+.+..-|..-    ....+.++|+.++.......      ....-+..+.|+|++++++.... +   ..|.++|.
T Consensus       212 ~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~  287 (465)
T d1xfda1         212 TVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (465)
T ss_dssp             CCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             eeeeeeccccCCCC----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcC
Confidence            23334443222111    11357888887664332221      12234778999999886665432 2   25888999


Q ss_pred             CCCeeEEEecccC-cCE----EEEEEcCCCCEEE--EEe-CCC--cEEEEECC------CccchheecccCCCccceeec
Q psy11350        352 RTGRCIMFLEGHL-KSV----FSVDFSPDGYHLA--TGS-EDN--AVKIWDLR------KRRLLKWCTQLLPNSIGVTSL  415 (471)
Q Consensus       352 ~~~~~~~~~~~h~-~~v----~~~~~sp~~~~l~--s~s-~dg--~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~  415 (471)
                      .++++...+..+. +.|    ....|+|+|+.++  ..+ .+|  .+...++.      .++.+..+..-.-....+.++
T Consensus       288 ~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~  367 (465)
T d1xfda1         288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (465)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEE
Confidence            9997665443221 212    3457999988432  222 333  34433322      222222222111111233344


Q ss_pred             cccce-eeeecccC-CCcccccchhhhc--cccccee----eecccceeeeecCCeEEEee
Q psy11350        416 LTDLY-IDVLESLN-PGIGNIISSALKE--QVEPIPL----LLDIQKLTFKFDSDLHAMVL  468 (471)
Q Consensus       416 ~~d~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~----~~~~~~l~fs~dg~~lA~~~  468 (471)
                      ..+.. +.+..... +...+++.-.+..  ...++.+    ....+...|||||++++...
T Consensus       368 d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         368 DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             cCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence            44433 33332222 2233344332221  1222221    22457889999999988543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=2e-07  Score=82.42  Aligned_cols=230  Identities=10%  Similarity=0.051  Sum_probs=126.8

Q ss_pred             EEecC--CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE-eCCC-----cEEEEeCCC
Q psy11350        159 SFSPD--SQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC-AQDG-----SVKLWSLDK  230 (471)
Q Consensus       159 ~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-~~dg-----~i~iwd~~~  230 (471)
                      ..|||  |+.+|..+ +|.|.+.|+.+++.. .+..+.+.+...+|+|+++     .|+.. ..++     .|.+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~-----~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGR-----KIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSS-----EEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCC-----EEEEEEeeCCCCCceEEEEEEecC
Confidence            35899  99998776 678999999888765 4566677889999999998     45543 3222     366777766


Q ss_pred             CcceeeecCC-----CCcceEEEEECCCCCEEEEEeCCCe------EEe-ccccccccCCCCcceEEEEECCCCCEEEEE
Q psy11350        231 DTPLANLEGH-----EPFRVSRIKFHPSGRFLGTCCWDHS------WRL-DTPLANLEGHEPFRVSRIKFHPSGRFLGTC  298 (471)
Q Consensus       231 ~~~~~~~~~~-----~~~~v~~~~~s~~~~~i~~~~~d~~------~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  298 (471)
                      ++........     .........|+|+|+.++.......      +.. .................+.+.+.+..++..
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN  157 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEES
T ss_pred             CceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEee
Confidence            6544332211     1124567899999999987654322      111 111111111111122233333333333333


Q ss_pred             ecCC-----------eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCeeEEEecccCc
Q psy11350        299 CWDH-----------SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGL--DAFGRVWDLRTGRCIMFLEGHLK  365 (471)
Q Consensus       299 ~~dg-----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~h~~  365 (471)
                      ....           ...++...... ......+........++++. ++.....  ...|+++|+.++.... +..+. 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~-  233 (281)
T d1k32a2         158 TFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFT-  233 (281)
T ss_dssp             CSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCC-
T ss_pred             ccccceeeeeccCCcceeeeeccccc-eeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecCC-
Confidence            2211           11122222222 22223334445556666653 3333333  3358888987765443 33222 


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchh
Q psy11350        366 SVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLK  400 (471)
Q Consensus       366 ~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  400 (471)
                      ......|+|||+.|+.. .++.|+++|+.+++..+
T Consensus       234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            22234689999987764 46889999999887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.84  E-value=4.5e-06  Score=74.33  Aligned_cols=215  Identities=13%  Similarity=0.016  Sum_probs=142.7

Q ss_pred             EEEEEecCCCEEE-EEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcce
Q psy11350        156 SYCSFSPDSQHVA-TASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPL  234 (471)
Q Consensus       156 ~~~~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  234 (471)
                      -+..|++....|+ +=-..+.|..||..+++.. .+. ....+.++++.+++.      |+.++.+ .|.++|..+++..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~------l~va~~~-gl~~~d~~tg~~~   91 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSK------QLIASDD-GLFLRDTATGVLT   91 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE------EEEEETT-EEEEEETTTCCEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCC------EEEEEeC-ccEEeecccceee
Confidence            3566887655554 4446789999999887653 333 346788999999886      4555554 5889999888754


Q ss_pred             eeecC---CCCcceEEEEECCCCCEEEEEeCCCe-------EEecccc-ccccCCCCcceEEEEECCCCCEEEEE-ecCC
Q psy11350        235 ANLEG---HEPFRVSRIKFHPSGRFLGTCCWDHS-------WRLDTPL-ANLEGHEPFRVSRIKFHPSGRFLGTC-CWDH  302 (471)
Q Consensus       235 ~~~~~---~~~~~v~~~~~s~~~~~i~~~~~d~~-------~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg  302 (471)
                      .....   .....++.+.+.|+|++.++......       +++.... ..+... -.....++|+++++.++.+ +..+
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTC
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccc
Confidence            43322   22336889999999997776543321       2222111 111111 1235789999999866554 5578


Q ss_pred             eEEEEECCCC------cE--EEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCEEEEEEc-
Q psy11350        303 SWRLWDLNQG------QE--VLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFS-  373 (471)
Q Consensus       303 ~i~iwd~~~~------~~--~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-  373 (471)
                      .|..|++...      +.  .....+.......+++..+|++.++.-..+.|..|| ..|+.+..+.-....+++++|- 
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEES
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeC
Confidence            8999987532      11  122233445678899999999888877888999999 4788888887666779999996 


Q ss_pred             CCCCEEEE
Q psy11350        374 PDGYHLAT  381 (471)
Q Consensus       374 p~~~~l~s  381 (471)
                      ||.+.|+.
T Consensus       250 ~d~~~Lyv  257 (295)
T d2ghsa1         250 PDASRLLV  257 (295)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEE
Confidence            56665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.84  E-value=9.2e-07  Score=79.30  Aligned_cols=201  Identities=11%  Similarity=0.033  Sum_probs=132.7

Q ss_pred             ceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC
Q psy11350        185 ELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  264 (471)
Q Consensus       185 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~  264 (471)
                      +.+..+.. ...+..+++.|++.     ++++...+++|..|+.... . ..+.... ..+.+++|+++|+++++...++
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~-----l~vt~~~~~~I~~i~p~g~-~-~~~~~~~-~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGT-----IFVTNHEVGEIVSITPDGN-Q-QIHATVE-GKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSC-----EEEEETTTTEEEEECTTCC-E-EEEEECS-SEEEEEEECTTSCEEEEEECTT
T ss_pred             cEEEECCC-CCCcCCEEECCCCC-----EEEEeCCCCEEEEEeCCCC-E-EEEEcCC-CCcceEEEcCCCCeEEEecCCc
Confidence            44444433 23578899999998     7888888999988886533 2 2222222 3789999999999888877666


Q ss_pred             eEEe---cccc---ccc-cCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee----------CCCCCeEE
Q psy11350        265 SWRL---DTPL---ANL-EGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQE----------GHGKPVYC  327 (471)
Q Consensus       265 ~~~~---~~~~---~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~  327 (471)
                      .+..   ....   ..+ ..........+++.++++++++.+.++.+..+|...+.......          ........
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            5322   1111   111 11123357899999999998888889999999988775433221          11233556


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEE--ecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        328 MSFQGDGSVVATGGLDAFGRVWDLRTGRCIMF--LEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       328 ~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      +.++. +.++++.+..+.|+.++.........  ..........+++.++|+++++...++.|..++...
T Consensus       170 i~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         170 LKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             ccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            76664 34666667788898888765432211  111234567799999999888888899999987653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8.2e-08  Score=91.83  Aligned_cols=200  Identities=13%  Similarity=0.068  Sum_probs=117.3

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecC---CCCEEEEEEeeCCCCCCccEEEEE---------eCCCcEEEE
Q psy11350        159 SFSPDSQHVATASWSGLCKLWTVPECELVQTFRGH---DCNVGAIEFHPLPSEGAVCSLASC---------AQDGSVKLW  226 (471)
Q Consensus       159 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~l~s~---------~~dg~i~iw  226 (471)
                      .|.+++.++.. ..+|.|.+||+.+++....+..+   .-.+....|+|++.     +++..         +..+.+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~-----~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-----YALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-----EEEEEESCCCCSSSCCCSEEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC-----eEEEEEcccceeEeeccccEEEE
Confidence            58888877654 44789999999888765444432   23567788999998     45444         335678889


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEE
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRL  306 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  306 (471)
                      |+.++...........                                     ...+....|||+|+.||... ++.|.+
T Consensus        97 d~~~~~~~~l~~~~~~-------------------------------------~~~l~~~~wSPDG~~iafv~-~~nl~~  138 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVS-------------------------------------NAKLQYAGWGPKGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             ESSSCCCEECCCTTCC-------------------------------------SCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred             EccCCceeeccCccCC-------------------------------------ccccceeeeccCCceEEEEe-cceEEE
Confidence            9887765433222111                                     11233455666666666554 455666


Q ss_pred             EECCCCcEEEEee-CCCC-----------------CeEEEEEeCCCCEEEEEeCC-C-----------------------
Q psy11350        307 WDLNQGQEVLHQE-GHGK-----------------PVYCMSFQGDGSVVATGGLD-A-----------------------  344 (471)
Q Consensus       307 wd~~~~~~~~~~~-~~~~-----------------~v~~~~~s~d~~~l~t~~~d-g-----------------------  344 (471)
                      .+...+..++... +...                 .-.++.|||||++||....| .                       
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            6665554433321 1111                 12467789999988875422 1                       


Q ss_pred             ----------eEEEEeCCCCeeEEEec------ccCcCEEEEEEcCCCCEEEEEeC-C---CcEEEEECCCccchhee
Q psy11350        345 ----------FGRVWDLRTGRCIMFLE------GHLKSVFSVDFSPDGYHLATGSE-D---NAVKIWDLRKRRLLKWC  402 (471)
Q Consensus       345 ----------~i~iwd~~~~~~~~~~~------~h~~~v~~~~~sp~~~~l~s~s~-d---g~i~iwd~~~~~~~~~~  402 (471)
                                .+.++|+.++.......      ....-+..+.|+|++++++.... +   ..|.++|..++++...+
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence                      24455554443221111      11223678899999886665432 2   24788888888765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.80  E-value=4.4e-06  Score=75.32  Aligned_cols=203  Identities=11%  Similarity=0.026  Sum_probs=130.9

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCC-----eEEec
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH-----SWRLD  269 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~-----~~~~~  269 (471)
                      ..+..++|.++++     ++++-...+.|..|+..++.....+..... ....++++++|+++++...+.     .+.+.
T Consensus        40 ~~lEG~~~D~~G~-----Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~-~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-----LFLLDVFEGNIFKINPETKEIKRPFVSHKA-NPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCEEEEEECTTSC-----EEEEETTTCEEEEECTTTCCEEEEEECSSS-SEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cCcEeCEECCCCC-----EEEEECCCCEEEEEECCCCeEEEEEeCCCC-CeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            4456889998886     666777888999999877655544433333 678999999999887765432     12222


Q ss_pred             ccc---cccc--CCCCcceEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEE-
Q psy11350        270 TPL---ANLE--GHEPFRVSRIKFHPSGRFLGTCCW------DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVV-  337 (471)
Q Consensus       270 ~~~---~~~~--~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-  337 (471)
                      ...   ....  .........+++.++|++.++...      .+.+..++..... +..+...-...+.++|+||++.| 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEE
Confidence            111   1111  111335788999999986665332      2346666654433 33222223345789999999865 


Q ss_pred             EEEeCCCeEEEEeCCCC-eeEE-------EecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        338 ATGGLDAFGRVWDLRTG-RCIM-------FLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       338 ~t~~~dg~i~iwd~~~~-~~~~-------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                      ++-+..+.|+.|++... ....       ...........|++.++|++.++....+.|.+|| ..++.+..+..+
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P  267 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIP  267 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECT
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCC
Confidence            45566889999997642 1111       1111223467899999999988888999999999 478888777544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=1.5e-05  Score=70.19  Aligned_cols=218  Identities=9%  Similarity=0.107  Sum_probs=140.7

Q ss_pred             CEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCC-----CCcceEEEEECCCCC-EEEEEeC-CCeEEe
Q psy11350        196 NVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGH-----EPFRVSRIKFHPSGR-FLGTCCW-DHSWRL  268 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~-~i~~~~~-d~~~~~  268 (471)
                      ....|++.+++.     ++++-..++.|++||.+ ++.+..+...     .......+++.++.. .+++... ++.+..
T Consensus        24 ~P~gvavd~dg~-----i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQND-----IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCC-----EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCCC-----EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            357899998876     66666677889999964 6655555321     111345556555543 3333322 223332


Q ss_pred             ccc----cccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eCCCCCeEEEEEeCCCCEEEEEeC
Q psy11350        269 DTP----LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQ--EGHGKPVYCMSFQGDGSVVATGGL  342 (471)
Q Consensus       269 ~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~~~  342 (471)
                      ...    ...+..........+++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.+++.++++...
T Consensus        98 ~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_          98 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             ccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc
Confidence            211    111222223357789999999988888878889898864 5555554  345567889999999999888888


Q ss_pred             CCeEEEEeCCCCeeEEEec--ccCcCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCccchheecccCC-Cccceeecccc
Q psy11350        343 DAFGRVWDLRTGRCIMFLE--GHLKSVFSVDFSPDGYHLATGSE-DNAVKIWDLRKRRLLKWCTQLLP-NSIGVTSLLTD  418 (471)
Q Consensus       343 dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~d  418 (471)
                      .+.|++||. +++.+.++.  +.......|++.|+|+++++-+. ++.|.+|+ .+++.+.++..... ....-+++..|
T Consensus       177 ~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         177 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            999999996 566676663  34556899999999998877554 45699998 56887766643322 12233344555


Q ss_pred             ceee
Q psy11350        419 LYID  422 (471)
Q Consensus       419 ~~~~  422 (471)
                      ..+.
T Consensus       255 G~l~  258 (279)
T d1q7fa_         255 GSVV  258 (279)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            5543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.64  E-value=2.8e-06  Score=76.45  Aligned_cols=191  Identities=9%  Similarity=0.030  Sum_probs=119.3

Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCC----CEEEEEEeeCCCCCCccEEEEEeC-----------
Q psy11350        155 ISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDC----NVGAIEFHPLPSEGAVCSLASCAQ-----------  219 (471)
Q Consensus       155 V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~l~s~~~-----------  219 (471)
                      -..++|.++++.|+++...+.|..++..............+    ..+.+++.+++.     +.++-..           
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-----lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-----LWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-----EEEEECBCBCTTSCCCBT
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-----EEEecCccCcccccccce
Confidence            56799999999888888777888999765432221111111    256789999886     4444321           


Q ss_pred             ----CCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCC----EEEEE-eCCCe-EEe--ccc--------cccccCCC
Q psy11350        220 ----DGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGR----FLGTC-CWDHS-WRL--DTP--------LANLEGHE  279 (471)
Q Consensus       220 ----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~i~~~-~~d~~-~~~--~~~--------~~~~~~~~  279 (471)
                          .|.|..++. .++....... .. ..+.++|+|++.    +++++ +..+. +.+  ...        ...+....
T Consensus       148 ~~~~~G~v~~~~~-dg~~~~~~~~-~~-~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         148 MQEKFGSIYCFTT-DGQMIQVDTA-FQ-FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TSSSCEEEEEECT-TSCEEEEEEE-ES-SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             eccCCceEEEEee-cCceeEeeCC-cc-eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence                223444443 2222221111 11 346788988765    44444 33443 222  111        11222222


Q ss_pred             CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCC
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGS-VVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~t~~~dg~i~iwd~~~  353 (471)
                      ......+++..+|+.+++....+.|.+||.+.++....+..+....++++|.||++ ++++.+.+|.|...++..
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            23456899999999888877889999999988877777766667789999999987 556667788888888653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.00035  Score=61.60  Aligned_cols=217  Identities=12%  Similarity=-0.011  Sum_probs=135.1

Q ss_pred             EEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccc--c-ccc
Q psy11350        199 AIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTP--L-ANL  275 (471)
Q Consensus       199 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~--~-~~~  275 (471)
                      +..|.+....    ++.+--..+.|.-||..+++.. .+...  ..+.++++.++|.++++ +.++...+...  . ..+
T Consensus        22 gp~wd~~~~~----l~wvDi~~~~I~r~d~~~g~~~-~~~~~--~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          22 GPTFDPASGT----AWWFNILERELHELHLASGRKT-VHALP--FMGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEETTTTE----EEEEEGGGTEEEEEETTTTEEE-EEECS--SCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEE
T ss_pred             CCeEECCCCE----EEEEECCCCEEEEEECCCCeEE-EEECC--CCcEEEEEecCCCEEEE-EeCccEEeecccceeeEE
Confidence            4567765542    3444446678888988777543 23222  26788999999877765 45666544211  1 111


Q ss_pred             ----cCCCCcceEEEEECCCCCEEEEEecC----CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEE-EEeCCCeE
Q psy11350        276 ----EGHEPFRVSRIKFHPSGRFLGTCCWD----HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVA-TGGLDAFG  346 (471)
Q Consensus       276 ----~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-t~~~dg~i  346 (471)
                          .......+..+.+.|+|++.++....    +.-.+|.+..++....... -..-+.++|+++++.++ +-+..+.|
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeeccccee
Confidence                11122368899999999876654322    3445666666654444332 33457899999998654 55567889


Q ss_pred             EEEeCCCC------e--eEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeecccc
Q psy11350        347 RVWDLRTG------R--CIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTD  418 (471)
Q Consensus       347 ~iwd~~~~------~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d  418 (471)
                      +.|++...      +  ....+.+..+....+++..+|++.++.-..+.|..|| ..++.+..+..+.+..+.+.-...|
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPD  251 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTT
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCC
Confidence            98887421      1  1122334456688999999999888877888999999 5688888887665554443333345


Q ss_pred             ceeeeec
Q psy11350        419 LYIDVLE  425 (471)
Q Consensus       419 ~~~~~~~  425 (471)
                      ....++.
T Consensus       252 ~~~LyvT  258 (295)
T d2ghsa1         252 ASRLLVT  258 (295)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            4444443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=0.0013  Score=56.73  Aligned_cols=211  Identities=12%  Similarity=-0.026  Sum_probs=130.1

Q ss_pred             eecCCcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEE
Q psy11350        148 QVGDTRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLW  226 (471)
Q Consensus       148 ~~gh~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  226 (471)
                      +..+...+.+++|.+..+.|+-.. .++.|+..++........+......+.++++...+..    +..+-...+.|.+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~----lY~~d~~~~~I~~~  106 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRT----IFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTE----EEEEETTTTEEEEE
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCe----EEEeccCCCEEEEE
Confidence            334555688899998888887664 4577888888766555555443456788998876652    33455566788888


Q ss_pred             eCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecC---Ce
Q psy11350        227 SLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD---HS  303 (471)
Q Consensus       227 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~  303 (471)
                      +++.......+.. .                                      ...+..++++|...+++.....   +.
T Consensus       107 ~~dg~~~~~l~~~-~--------------------------------------l~~p~~l~vdp~~g~ly~t~~~~~~~~  147 (263)
T d1npea_         107 KMDGTQRRVLFDT-G--------------------------------------LVNPRGIVTDPVRGNLYWTDWNRDNPK  147 (263)
T ss_dssp             ETTSCSCEEEECS-S--------------------------------------CSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred             ecCCceEEEEecc-c--------------------------------------ccCCcEEEEecccCcEEEeecCCCCcE
Confidence            8764432221111 1                                      1135667777766655544322   23


Q ss_pred             EEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE
Q psy11350        304 WRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG  382 (471)
Q Consensus       304 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  382 (471)
                      |...++............-....++++.+.++.|+.+ ...+.|...++........+.+. ....+|++. ++.+..+-
T Consensus       148 I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd  225 (263)
T d1npea_         148 IETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTD  225 (263)
T ss_dssp             EEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEE
T ss_pred             EEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEE
Confidence            4444554433322232233456799999877766555 46788999998765444344433 345688886 34444555


Q ss_pred             eCCCcEEEEECCCccchheec
Q psy11350        383 SEDNAVKIWDLRKRRLLKWCT  403 (471)
Q Consensus       383 s~dg~i~iwd~~~~~~~~~~~  403 (471)
                      ...+.|...|..+++.+..+.
T Consensus       226 ~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         226 WKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEECCCCccceEEC
Confidence            567889999999888776553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=0.00083  Score=60.69  Aligned_cols=188  Identities=13%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             CCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCC----------------------------------------cce
Q psy11350        206 PSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEP----------------------------------------FRV  245 (471)
Q Consensus       206 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------------------------~~v  245 (471)
                      |....+..|.||+..|.|+|+=+.+++.+..+.....                                        ..-
T Consensus         8 G~~Deyy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH   87 (459)
T d1fwxa2           8 GQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH   87 (459)
T ss_dssp             TCCCSEEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC
T ss_pred             CCcccEEEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC
Confidence            3334455688999999999999888876665432111                                        011


Q ss_pred             EEEEECC---CCCEEEEEeCCCe----EEec--cccccccCCCCcceEEEEECC--CCCEEEEEecC-------------
Q psy11350        246 SRIKFHP---SGRFLGTCCWDHS----WRLD--TPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWD-------------  301 (471)
Q Consensus       246 ~~~~~s~---~~~~i~~~~~d~~----~~~~--~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d-------------  301 (471)
                      ..+.+..   ||+++++......    +++.  .....+.......+..+...+  +..|++.++.+             
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            2334433   6777776664433    2221  112222333334566666654  44577776653             


Q ss_pred             -----CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCC---------------eEEEEe-----------
Q psy11350        302 -----HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDA---------------FGRVWD-----------  350 (471)
Q Consensus       302 -----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg---------------~i~iwd-----------  350 (471)
                           +.+.++|..+.+....+.- ......++++++|+++++.+.+.               .+.+++           
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 2367899998877666543 23456789999999999877432               133333           


Q ss_pred             ------------CCC--C-eeEEEecccCcCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q psy11350        351 ------------LRT--G-RCIMFLEGHLKSVFSVDFSPDGYHLATGS-EDNAVKIWDLRK  395 (471)
Q Consensus       351 ------------~~~--~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~i~iwd~~~  395 (471)
                                  .+.  + ..+..+. -......+.++|||+++++++ .+.++.|+|+++
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                        221  1 1111121 123456789999999987665 678999999974

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.92  E-value=0.0015  Score=63.25  Aligned_cols=128  Identities=11%  Similarity=-0.008  Sum_probs=83.9

Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEeeCCCCC-----------------------------------eEEEEEeCCCCEEE
Q psy11350        294 FLGTCCWDHSWRLWDLNQGQEVLHQEGHGKP-----------------------------------VYCMSFQGDGSVVA  338 (471)
Q Consensus       294 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------------------v~~~~~s~d~~~l~  338 (471)
                      .++.++.+|.+.++|..+++.+.........                                   -..++++|+..+++
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~y  408 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY  408 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE
T ss_pred             eeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEE
Confidence            5777889999999999999877543211000                                   01246777766666


Q ss_pred             EEeCC-------------------------------------------CeEEEEeCCCCeeEEEecccCcCEEEEEEcCC
Q psy11350        339 TGGLD-------------------------------------------AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPD  375 (471)
Q Consensus       339 t~~~d-------------------------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  375 (471)
                      ....+                                           |.+.-||+.+++.+-..... .+...=..+-.
T Consensus       409 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~-~p~~gg~lsta  487 (573)
T d1kb0a2         409 LPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTA  487 (573)
T ss_dssp             EEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEET
T ss_pred             eeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCC-CCCCCceEEEc
Confidence            53322                                           35667788888777665422 12111122336


Q ss_pred             CCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceee
Q psy11350        376 GYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYID  422 (471)
Q Consensus       376 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  422 (471)
                      |.++++|+.||.++.+|.++|+.+..+..........++...|....
T Consensus       488 gglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            77888999999999999999999988877666555555554555444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=0.00042  Score=60.05  Aligned_cols=195  Identities=13%  Similarity=0.036  Sum_probs=100.8

Q ss_pred             ecCCcCeEEEEEecCCCEEEEEeC-C-----CcEEEEeCCCCceEEEee------cCCCCEEEEEEeeCCCCCCccEEEE
Q psy11350        149 VGDTRPISYCSFSPDSQHVATASW-S-----GLCKLWTVPECELVQTFR------GHDCNVGAIEFHPLPSEGAVCSLAS  216 (471)
Q Consensus       149 ~gh~~~V~~~~~s~~~~~l~tg~~-d-----g~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~~~~l~s  216 (471)
                      ..+.+.+...+|||||+.||.... +     ..|.+++..+++......      ..........|+|++.     .|+.
T Consensus        37 t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~-----~l~~  111 (281)
T d1k32a2          37 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-----LIIS  111 (281)
T ss_dssp             ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-----EEEE
T ss_pred             ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC-----EEEE
Confidence            346677889999999999986542 2     248888887776654321      1123456788999998     4554


Q ss_pred             EeCC------CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe------------EEe--c-cccccc
Q psy11350        217 CAQD------GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------------WRL--D-TPLANL  275 (471)
Q Consensus       217 ~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~------------~~~--~-~~~~~~  275 (471)
                      ....      ..+...+...+........    ......+.+.+..++.......            ...  . ......
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (281)
T d1k32a2         112 TDAMQPFSSMTCLYRVENDGINFVPLNLG----PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI  187 (281)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSC----SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred             EEccCCCccceeeeeecCCCceeEEecCC----ccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeec
Confidence            3221      2244445444433222111    1222333333334333322211            000  0 000001


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy11350        276 EGHEPFRVSRIKFHPSGRFLGTCCW--DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT  353 (471)
Q Consensus       276 ~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~  353 (471)
                      ... ........++++. .+.....  ...|.++|+.++............  ...|+|||+.|+.. .++.|+++|+.+
T Consensus       188 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~  262 (281)
T d1k32a2         188 VDM-STHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPDT  262 (281)
T ss_dssp             ECC-SSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             cCC-ccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEECCC
Confidence            111 1123344444442 2222222  235888898776544332222233  34689999987764 478899999988


Q ss_pred             CeeE
Q psy11350        354 GRCI  357 (471)
Q Consensus       354 ~~~~  357 (471)
                      ++..
T Consensus       263 g~~~  266 (281)
T d1k32a2         263 EKIE  266 (281)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            8654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.0014  Score=59.25  Aligned_cols=224  Identities=10%  Similarity=0.007  Sum_probs=133.7

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEeecC---------------------------------------CCCE--EEEEEee-
Q psy11350        167 VATASWSGLCKLWTVPECELVQTFRGH---------------------------------------DCNV--GAIEFHP-  204 (471)
Q Consensus       167 l~tg~~dg~i~iwd~~~~~~~~~~~~h---------------------------------------~~~v--~~l~~~~-  204 (471)
                      +.+|+.+|.|+|+-+++++.+..+...                                       .+..  ..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            557888999999999888877664210                                       0011  1334432 


Q ss_pred             --CCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC--CCCEEEEEeCCCe---------------
Q psy11350        205 --LPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP--SGRFLGTCCWDHS---------------  265 (471)
Q Consensus       205 --~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~i~~~~~d~~---------------  265 (471)
                        +|..    +++.-..++.|.+-|+++.++...+.......+..+...+  +-.|++..+....               
T Consensus        96 tyDGry----lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y  171 (459)
T d1fwxa2          96 KYDGRF----LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  171 (459)
T ss_dssp             EEEEEE----EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred             ccceeE----EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence              3442    5666668899999999999987766665555677777654  4557777665332               


Q ss_pred             ------EEeccccccccCCCCcceEEEEECCCCCEEEEEecCC---------------eEEEE-----------------
Q psy11350        266 ------WRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH---------------SWRLW-----------------  307 (471)
Q Consensus       266 ------~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---------------~i~iw-----------------  307 (471)
                            ++..+.....+.........+.++|+|+++++.+.+.               .+.++                 
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence                  1111111111111122355789999999998877531               13333                 


Q ss_pred             ------ECCCC---cEEEEeeCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCe-----------eEEEecccCcC
Q psy11350        308 ------DLNQG---QEVLHQEGHGKPVYCMSFQGDGSVVATGG-LDAFGRVWDLRTGR-----------CIMFLEGHLKS  366 (471)
Q Consensus       308 ------d~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~t~~-~dg~i~iwd~~~~~-----------~~~~~~~h~~~  366 (471)
                            |.+..   ..+..+.- ......+.++|||+++++++ .+.++.|+|++.-.           .+..-....-.
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             CCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence                  33321   11111211 12234689999999887765 68899999986321           11111112334


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy11350        367 VFSVDFSPDGYHLATGSEDNAVKIWDLRK  395 (471)
Q Consensus       367 v~~~~~sp~~~~l~s~s~dg~i~iwd~~~  395 (471)
                      ...-+|...|.-..|---|..|.-|++..
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCceEEEEeeccceEEEEecch
Confidence            56678988886555666899999999853

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0091  Score=51.18  Aligned_cols=214  Identities=9%  Similarity=-0.094  Sum_probs=126.7

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCc----eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEE
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS-WSGLCKLWTVPECE----LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVK  224 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~-~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  224 (471)
                      .+...+.+++|.+..+.|+-.. ..+.|...++....    ....+......+.++++.+.+.+    +..+-...+.|.
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~----lY~~d~~~~~I~  102 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN----IYWTDSVLGTVS  102 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE----EEEEETTTTEEE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce----EEEEecCCCEEE
Confidence            3455678999999888887665 45667666664321    12222222345667888776663    444555667888


Q ss_pred             EEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEe--cCC
Q psy11350        225 LWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCC--WDH  302 (471)
Q Consensus       225 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg  302 (471)
                      +.++............                                       ......++++|...+|+...  ..+
T Consensus       103 v~~~~g~~~~~~~~~~---------------------------------------~~~P~~l~vd~~~g~ly~~~~~~~~  143 (266)
T d1ijqa1         103 VADTKGVKRKTLFREN---------------------------------------GSKPRAIVVDPVHGFMYWTDWGTPA  143 (266)
T ss_dssp             EEETTSSSEEEEEECT---------------------------------------TCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             eEecCCceEEEEEcCC---------------------------------------CCCcceEEEEcccCeEEEeccCCCc
Confidence            8888644332222211                                       11356777777555555443  234


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCeeEEEe--cccCcCEEEEEEcCCCCEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLDAFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l  379 (471)
                      .|...++............-...+++++.+.+..|+.+ ...+.|...++.........  ........+|++. ++.+.
T Consensus       144 ~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly  222 (266)
T d1ijqa1         144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF  222 (266)
T ss_dssp             EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEE
T ss_pred             ceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEE
Confidence            57667765443333333334556899999877666555 56788999998655433222  2223457788886 34455


Q ss_pred             EEEeCCCcEEEEECCCccchheecccCC
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLKWCTQLLP  407 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~  407 (471)
                      .+-..++.|...+..+++....+.....
T Consensus       223 ~td~~~~~I~~~~~~~g~~~~~~~~~~~  250 (266)
T d1ijqa1         223 WTDIINEAIFSANRLTGSDVNLLAENLL  250 (266)
T ss_dssp             EEETTTTEEEEEETTTCCCCEEEECSCS
T ss_pred             EEECCCCeEEEEECCCCcceEEEEcCCC
Confidence            5555778888888888877766554333

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.73  E-value=0.0035  Score=60.30  Aligned_cols=253  Identities=11%  Similarity=0.011  Sum_probs=145.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCCC----EEEEEEeeCCCCCCccEEEEEeC------CCcEEEEeCCCCcc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDCN----VGAIEFHPLPSEGAVCSLASCAQ------DGSVKLWSLDKDTP  233 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~  233 (471)
                      +..++.++.++.|.-.|..+|+.+..+..+...    ++..-..-.+      .++.+..      .|.|.-+|..+|+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~------~vivg~~~~~~~~~G~v~a~D~~TG~~  190 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG------KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecC------cccccccceeccccceEEEEECCCceE
Confidence            457888888999999999999998877532211    1000000111      2344332      36799999999998


Q ss_pred             eeeecCCCC------------------------------cceEEEEECCCCCEEEEEeCCCe------------------
Q psy11350        234 LANLEGHEP------------------------------FRVSRIKFHPSGRFLGTCCWDHS------------------  265 (471)
Q Consensus       234 ~~~~~~~~~------------------------------~~v~~~~~s~~~~~i~~~~~d~~------------------  265 (471)
                      +..+.....                              ..-..+++.+....++.+.....                  
T Consensus       191 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~  270 (560)
T d1kv9a2         191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (560)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccce
Confidence            877642110                              01223566677776665543321                  


Q ss_pred             --EEe--ccccc----cccCC------CCcceEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeeCCC------
Q psy11350        266 --WRL--DTPLA----NLEGH------EPFRVSRIKFHPSG---RFLGTCCWDHSWRLWDLNQGQEVLHQEGHG------  322 (471)
Q Consensus       266 --~~~--~~~~~----~~~~~------~~~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------  322 (471)
                        +-+  .+...    ....|      ......-+....++   ..++.++.+|.+.++|..+++++.....-.      
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence              111  00000    00000      00111111222233   256778899999999999998775432100      


Q ss_pred             ------------------CC------------eEEEEEeCCCCEEEEEeC------------------------------
Q psy11350        323 ------------------KP------------VYCMSFQGDGSVVATGGL------------------------------  342 (471)
Q Consensus       323 ------------------~~------------v~~~~~s~d~~~l~t~~~------------------------------  342 (471)
                                        ..            -...+++|+..+++....                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                              00            013567777766665432                              


Q ss_pred             ------CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeecc
Q psy11350        343 ------DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLL  416 (471)
Q Consensus       343 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  416 (471)
                            .|.|.-||+.+++.+-.+.. ..+..+-.++-.+.++++|+.||.++-+|.++|+.+-.+..........++..
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~  509 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE  509 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             CCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEE
Confidence                  24677889999987766542 22222222333567888999999999999999999988877666555555555


Q ss_pred             ccceeee
Q psy11350        417 TDLYIDV  423 (471)
Q Consensus       417 ~d~~~~~  423 (471)
                      .+....+
T Consensus       510 ~dGkqyv  516 (560)
T d1kv9a2         510 LAGRQYV  516 (560)
T ss_dssp             ETTEEEE
T ss_pred             ECCEEEE
Confidence            5554443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.69  E-value=0.0048  Score=59.45  Aligned_cols=253  Identities=12%  Similarity=0.061  Sum_probs=143.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCC----CCEEEEEEeeCCCCCCccEEEEEe------CCCcEEEEeCCCCcc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHD----CNVGAIEFHPLPSEGAVCSLASCA------QDGSVKLWSLDKDTP  233 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~  233 (471)
                      +..|+.++.+|.|.-.|..+|+.+.......    ..++.--....+      .++.+.      ..|.|.-+|+.+|+.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~------~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD------TVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT------EEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC------eEEEeeccccccccCcEEEEECCCCcE
Confidence            3567788889999999999999887654221    111111111122      344544      367899999999998


Q ss_pred             eeeecCCCC------------------------------------cce-EEEEECCCCCEEEEEeCCCe-----------
Q psy11350        234 LANLEGHEP------------------------------------FRV-SRIKFHPSGRFLGTCCWDHS-----------  265 (471)
Q Consensus       234 ~~~~~~~~~------------------------------------~~v-~~~~~s~~~~~i~~~~~d~~-----------  265 (471)
                      +..+.....                                    ..+ ...++.+....++.+.....           
T Consensus       189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n  268 (571)
T d2ad6a1         189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccc
Confidence            876542210                                    011 23456666666655544321           


Q ss_pred             ------E--Eecccccc--cc--CC------CCcceEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeeCC---
Q psy11350        266 ------W--RLDTPLAN--LE--GH------EPFRVSRIKFHPSGR---FLGTCCWDHSWRLWDLNQGQEVLHQEGH---  321 (471)
Q Consensus       266 ------~--~~~~~~~~--~~--~~------~~~~v~~l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~---  321 (471)
                            +  +..+....  ++  .|      .........+..+++   .++.++.+|.+.++|..+++.+......   
T Consensus       269 ~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             ccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence                  1  11110000  00  00      001111112222333   4677888999999999999877432110   


Q ss_pred             ----------CCCe--------------------------EEEEEeCCCCEEEEEeCC----------------------
Q psy11350        322 ----------GKPV--------------------------YCMSFQGDGSVVATGGLD----------------------  343 (471)
Q Consensus       322 ----------~~~v--------------------------~~~~~s~d~~~l~t~~~d----------------------  343 (471)
                                ..++                          ...+++|+..+++....+                      
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence                      0000                          125677777766654332                      


Q ss_pred             ---------------CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCC
Q psy11350        344 ---------------AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPN  408 (471)
Q Consensus       344 ---------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  408 (471)
                                     |.|.-+|+.+|+.+-....- .+..+-.++..+.++++|+.||.++-+|.++|+.+-.+......
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                           45777788888776554311 11111112224668888999999999999999999888777666


Q ss_pred             ccceeeccccceeee
Q psy11350        409 SIGVTSLLTDLYIDV  423 (471)
Q Consensus       409 ~~~~~~~~~d~~~~~  423 (471)
                      ....++...|....+
T Consensus       508 ~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYI  522 (571)
T ss_dssp             CSCCEEEEETTEEEE
T ss_pred             eecceEEEECCEEEE
Confidence            555565555655444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=0.021  Score=52.60  Aligned_cols=240  Identities=14%  Similarity=0.067  Sum_probs=132.2

Q ss_pred             cCCcCeEEEEEecCCCEEEEEe-CC----CcEEEEeCCCCceEE-EeecCCCCEEEEEEeeCCCCCCccEEEEEeCC---
Q psy11350        150 GDTRPISYCSFSPDSQHVATAS-WS----GLCKLWTVPECELVQ-TFRGHDCNVGAIEFHPLPSEGAVCSLASCAQD---  220 (471)
Q Consensus       150 gh~~~V~~~~~s~~~~~l~tg~-~d----g~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---  220 (471)
                      ++.-.+..+++|||++++|.+- .+    ..|+++|+.+++.+. .+..  .....++|.+++.     .|+-...+   
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~-----~~~Y~~~~~~~  194 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGK-----GMFYNAYPQQD  194 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSS-----EEEEEECCCCS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCC-----EEEEEEecccc
Confidence            4555566778999999988543 23    379999999998764 2221  1224688999987     34433222   


Q ss_pred             -------------CcEEEEeCCCCcce--eeecCCC-CcceEEEEECCCCCEEEEEeCCCe------EEec--ccccccc
Q psy11350        221 -------------GSVKLWSLDKDTPL--ANLEGHE-PFRVSRIKFHPSGRFLGTCCWDHS------WRLD--TPLANLE  276 (471)
Q Consensus       221 -------------g~i~iwd~~~~~~~--~~~~~~~-~~~v~~~~~s~~~~~i~~~~~d~~------~~~~--~~~~~~~  276 (471)
                                   ..|..|.+.+...-  ..+.... ...+..+..++++++++.....+.      +.+.  .....+.
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                         25778888766432  3333332 234677888999999876544322      2221  1111111


Q ss_pred             ---------CCCCcceEEEEECCCCCEEEEEe----cCCeEEEEECCCCcE--EEEe-eCCCCCeEEEEEeCCCCEEEEE
Q psy11350        277 ---------GHEPFRVSRIKFHPSGRFLGTCC----WDHSWRLWDLNQGQE--VLHQ-EGHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       277 ---------~~~~~~v~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~~--~~~~-~~~~~~v~~~~~s~d~~~l~t~  340 (471)
                               ........-+. + .+..|+.-+    .++.|...++.....  ...+ ..+...+..-.+...+.+|+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~  352 (430)
T d1qfma1         275 GILKWVKLIDNFEGEYDYVT-N-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (430)
T ss_dssp             SSCCCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             cccceeEeecccccceEEEe-c-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence                     11111122222 2 233333322    235677777765422  1233 3344445444444444555544


Q ss_pred             e-CCC--eEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEE-EEEe---CCCcEEEEECCCccc
Q psy11350        341 G-LDA--FGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHL-ATGS---EDNAVKIWDLRKRRL  398 (471)
Q Consensus       341 ~-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s---~dg~i~iwd~~~~~~  398 (471)
                      . .++  .|+++++.++..........+.|..+...++...+ ++-+   .-.++.-+|+.+++.
T Consensus       353 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         353 YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            3 444  48899998887665555455666666655555433 3322   236788899988864

>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: PRP4-like
family: PRP4-like
domain: Pre-mRNA-splicing factor 18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=8.2e-06  Score=50.83  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             hhhcccccCCChHHHHHHHHHhCCCcccccccccH
Q psy11350         73 KKARHVNVSTDDNQVKLNLRQLGEPICLFGEEYSL  107 (471)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~s~  107 (471)
                      .++..+.+++.+.+|+..||.+|+||++|||...-
T Consensus        11 ~~~~~~~v~l~~~eV~~~LR~lgePI~lFGE~~~~   45 (63)
T d2dk4a1          11 LAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYD   45 (63)
T ss_dssp             SSCCCSSCCSCHHHHHHHHHHHTCCSSCTTCCHHH
T ss_pred             hhhccCCCCCCHHHHHHHHHHcCCCeehhcCChHH
Confidence            45566778999999999999999999999998554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.50  E-value=0.0096  Score=57.51  Aligned_cols=253  Identities=12%  Similarity=-0.007  Sum_probs=145.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEeecCCC----CEEEEEEeeCCCCCCccEEEEEeC------CCcEEEEeCCCCcc
Q psy11350        164 SQHVATASWSGLCKLWTVPECELVQTFRGHDC----NVGAIEFHPLPSEGAVCSLASCAQ------DGSVKLWSLDKDTP  233 (471)
Q Consensus       164 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~  233 (471)
                      +.+|+.++.|+.|.-.|..+|+.+..+.....    .++.--..-.+      .++.+..      .|.|.-+|+.+|+.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~------~vivg~~~~e~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD------KVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT------EEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECC------eEEEeeccccccccCceEEEECCCCcE
Confidence            34788899999999999999999988753211    11110001111      3555543      48899999999998


Q ss_pred             eeeecCCC-------------------------------------CcceEEEEECCCCCEEEEEeCCCe-----------
Q psy11350        234 LANLEGHE-------------------------------------PFRVSRIKFHPSGRFLGTCCWDHS-----------  265 (471)
Q Consensus       234 ~~~~~~~~-------------------------------------~~~v~~~~~s~~~~~i~~~~~d~~-----------  265 (471)
                      +.++....                                     ...-..+++.+....++.+..+..           
T Consensus       195 ~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n  274 (596)
T d1w6sa_         195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN  274 (596)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccc
Confidence            87654211                                     001224456666666665543321           


Q ss_pred             --------EEecccccc----ccCC------CCcceEEEEE-CCCCC---EEEEEecCCeEEEEECCCCcEEEEeeCCC-
Q psy11350        266 --------WRLDTPLAN----LEGH------EPFRVSRIKF-HPSGR---FLGTCCWDHSWRLWDLNQGQEVLHQEGHG-  322 (471)
Q Consensus       266 --------~~~~~~~~~----~~~~------~~~~v~~l~~-~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  322 (471)
                              ++..+....    ...|      .......+.. ..+|+   .++..+.+|.+.++|..+++++....... 
T Consensus       275 ~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~  354 (596)
T d1w6sa_         275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT  354 (596)
T ss_dssp             TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccc
Confidence                    111111100    0000      0111112221 23443   57778889999999999998775422100 


Q ss_pred             ------------CCe--------------------------EEEEEeCCCCEEEEEeC----------------------
Q psy11350        323 ------------KPV--------------------------YCMSFQGDGSVVATGGL----------------------  342 (471)
Q Consensus       323 ------------~~v--------------------------~~~~~s~d~~~l~t~~~----------------------  342 (471)
                                  .++                          ..++++|+..+++....                      
T Consensus       355 ~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~  434 (596)
T d1w6sa_         355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (596)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccc
Confidence                        000                          12456666555554321                      


Q ss_pred             -----------------CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheeccc
Q psy11350        343 -----------------DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQL  405 (471)
Q Consensus       343 -----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  405 (471)
                                       -|.|.-||+.+++.+-... +..++.+-.++..|.+++.|+.||.++-+|.++|+.+-.+...
T Consensus       435 ~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccccccCcccCcccCCCcceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence                             1467778888887765443 2222222222335778889999999999999999999988777


Q ss_pred             CCCccceeeccccceeee
Q psy11350        406 LPNSIGVTSLLTDLYIDV  423 (471)
Q Consensus       406 ~~~~~~~~~~~~d~~~~~  423 (471)
                      .......++...|....+
T Consensus       514 ~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         514 SGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             SCCCSCCEEEEETTEEEE
T ss_pred             CCcccCCeEEEECCEEEE
Confidence            666656666555654433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.48  E-value=0.0064  Score=55.12  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=67.1

Q ss_pred             CeEEEEEecCCCEEEEEeCCC-----------cEEEEeCCCCceEE--Ee-ecCCCCEEEEEEeeCCCCCCccEEEEEeC
Q psy11350        154 PISYCSFSPDSQHVATASWSG-----------LCKLWTVPECELVQ--TF-RGHDCNVGAIEFHPLPSEGAVCSLASCAQ  219 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg-----------~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  219 (471)
                      ++.......+|+.++.|+.+.           .+.+||+.+++-..  .. ..|.....+.++.+++.     +++.|+.
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-----i~v~Gg~   95 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-----IVVTGGN   95 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-----EEEECSS
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-----EEEeecC
Confidence            444455567889999888531           37899998765332  12 22333334667888887     6677665


Q ss_pred             C-CcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCC
Q psy11350        220 D-GSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWD  263 (471)
Q Consensus       220 d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d  263 (471)
                      + ..+.+||..+..-...-.......-...+..+||+.++.++..
T Consensus        96 ~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          96 DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             CCcceeEecCccCcccccccccccccccceeeecCCceeeecccc
Confidence            4 6899999887654433222222234567888899999888753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.025  Score=48.18  Aligned_cols=191  Identities=8%  Similarity=-0.072  Sum_probs=110.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCc-----eEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecC
Q psy11350        165 QHVATASWSGLCKLWTVPECE-----LVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEG  239 (471)
Q Consensus       165 ~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  239 (471)
                      .+|+.+. .+.|+-.+++...     ....+..+...+.+|+|.+..+.    ++.+-..++.|...++........+..
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~----iywsd~~~~~I~~~~l~g~~~~~v~~~   76 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV----VYWTDISEPSIGRASLHGGEPTTIIRQ   76 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE----EEEEETTTTEEEEEESSSCCCEEEECT
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE----EEEEECCCCeEEEEEcccCCcEEEEEe
Confidence            4454444 3566666654322     11223333445778888877662    333444557777777754433222211


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEe
Q psy11350        240 HEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLNQGQEVLHQ  318 (471)
Q Consensus       240 ~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~  318 (471)
                      .                                       ...+.++++..-+..|+.+ ...+.|.+.++........+
T Consensus        77 ~---------------------------------------~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~  117 (263)
T d1npea_          77 D---------------------------------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF  117 (263)
T ss_dssp             T---------------------------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             c---------------------------------------cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe
Confidence            1                                       1246778887655555544 45678999998765443333


Q ss_pred             eCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q psy11350        319 EGHGKPVYCMSFQGDGSVVATGGL---DAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG-SEDNAVKIWDLR  394 (471)
Q Consensus       319 ~~~~~~v~~~~~s~d~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~i~iwd~~  394 (471)
                      .........+++.|...+|+....   ...|.--++............-....+|++.+.++.|+.+ ...+.|...|+.
T Consensus       118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            333466889999997666664432   2235545665443333333334567899999877766554 567889999997


Q ss_pred             Cccch
Q psy11350        395 KRRLL  399 (471)
Q Consensus       395 ~~~~~  399 (471)
                      .....
T Consensus       198 g~~~~  202 (263)
T d1npea_         198 QPGRR  202 (263)
T ss_dssp             EEEEE
T ss_pred             CCCeE
Confidence            65543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.20  E-value=0.0081  Score=57.76  Aligned_cols=223  Identities=10%  Similarity=0.011  Sum_probs=118.6

Q ss_pred             EEEEecCCCEEEEEeC----------------CCcEEEEeCCCCceEEEeecCCCCE---------EEEEEeeCCCCCCc
Q psy11350        157 YCSFSPDSQHVATASW----------------SGLCKLWTVPECELVQTFRGHDCNV---------GAIEFHPLPSEGAV  211 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~----------------dg~i~iwd~~~~~~~~~~~~h~~~v---------~~l~~~~~~~~~~~  211 (471)
                      ..++.+...+++.+..                ...+.-.|..+|+.+..++.+...+         .......++.  ..
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~--~~  316 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGK--MT  316 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTE--EE
T ss_pred             ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCc--cc
Confidence            3456677776665543                3467788999999988877432221         1222222332  11


Q ss_pred             cEEEEEeCCCcEEEEeCCCCcceeeecCCCCc--------------------------------------ceEEEEECCC
Q psy11350        212 CSLASCAQDGSVKLWSLDKDTPLANLEGHEPF--------------------------------------RVSRIKFHPS  253 (471)
Q Consensus       212 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------------~v~~~~~s~~  253 (471)
                      ..++.++.+|.+.++|..+++.+...+.....                                      .-...+++|+
T Consensus       317 ~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~  396 (571)
T d2ad6a1         317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             cceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCC
Confidence            24678889999999999999876443221100                                      0012455556


Q ss_pred             CCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCC
Q psy11350        254 GRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGD  333 (471)
Q Consensus       254 ~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d  333 (471)
                      ...+++...+....+.................+...+.... ......|.|.-+|+.+++.+...... .+..+-..+-.
T Consensus       397 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~Ta  474 (571)
T d2ad6a1         397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNG-PTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS-TTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEET
T ss_pred             CceEEEeccccccccccccccccCCccccccceeeccccCC-cccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEec
Confidence            56565555544333221111111110001111111111000 01122368999999999887665421 11111112224


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEEEecccCc-CEEEEEEcCCCC-EEEEEe
Q psy11350        334 GSVVATGGLDAFGRVWDLRTGRCIMFLEGHLK-SVFSVDFSPDGY-HLATGS  383 (471)
Q Consensus       334 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~-~l~s~s  383 (471)
                      +.++++|+.||.++.+|.++|+.+-.+.-... .-.-+.|..||+ |+++..
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            66888899999999999999999987753211 111244445775 554443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.054  Score=46.07  Aligned_cols=191  Identities=7%  Similarity=-0.091  Sum_probs=112.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEE-eCCCcEEEEeCCCCcceeeecCCCCcc
Q psy11350        166 HVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASC-AQDGSVKLWSLDKDTPLANLEGHEPFR  244 (471)
Q Consensus       166 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~  244 (471)
                      +|+.+. ...|+..++.+......+. ....+.+++|.+...     .|+-. ...+.|.-.++.......         
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~-----~lYw~D~~~~~I~~~~l~~~~~~~---------   66 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN-----RIYWSDLSQRMICSTQLDRAHGVS---------   66 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTT-----EEEEEETTTTEEEEEEC----------------
T ss_pred             EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCC-----EEEEEECCCCEEEEEEecCCCCCc---------
Confidence            344444 3468888887655444443 445677899988766     34433 345556555553211000         


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEeeCCCC
Q psy11350        245 VSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLNQGQEVLHQEGHGK  323 (471)
Q Consensus       245 v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~  323 (471)
                                                ....+.......+.++++.+.+..|+.+ ...+.|.+.++..............
T Consensus        67 --------------------------~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~  120 (266)
T d1ijqa1          67 --------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS  120 (266)
T ss_dssp             ---------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC
T ss_pred             --------------------------ceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC
Confidence                                      0000000102235678887766655554 4557899999987665555555566


Q ss_pred             CeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCccc
Q psy11350        324 PVYCMSFQGDGSVVATGG--LDAFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATG-SEDNAVKIWDLRKRRL  398 (471)
Q Consensus       324 ~v~~~~~s~d~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~~  398 (471)
                      ....++++|...+|+...  ..+.|.-.++............-..+.++++.+.+..|+.+ +..+.|...++.....
T Consensus       121 ~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence            788999999655555443  34567777775444433333344668999999877766655 5668899999875543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.07  E-value=0.048  Score=52.32  Aligned_cols=81  Identities=21%  Similarity=0.285  Sum_probs=54.6

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC-EEEEEEcCCCC-E
Q psy11350        301 DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS-VFSVDFSPDGY-H  378 (471)
Q Consensus       301 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~sp~~~-~  378 (471)
                      .|.|.-+|+.+++.+.....+. ++..-..+..+.++++|+.||.++.+|.++|+.+-++.-.... -.-+.|..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678999999998887765332 2222223446778889999999999999999999887632211 11145556775 5


Q ss_pred             EEEE
Q psy11350        379 LATG  382 (471)
Q Consensus       379 l~s~  382 (471)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.96  E-value=0.18  Score=48.17  Aligned_cols=79  Identities=15%  Similarity=0.047  Sum_probs=55.5

Q ss_pred             CeEEEEeCCCCeeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECCCccchheecccCCCccceeeccccceeee
Q psy11350        344 AFGRVWDLRTGRCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLRKRRLLKWCTQLLPNSIGVTSLLTDLYIDV  423 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  423 (471)
                      |.|.-+|+.+|+.+-....+ .++.+-..+..|.++++|+.||.++-+|.++|+.+..+..........++...+....+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56777888888877666533 22222223346778889999999999999999999988877666555566555654443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.61  E-value=0.024  Score=54.26  Aligned_cols=82  Identities=12%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcC-EEEEEEcCCCC-EE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKS-VFSVDFSPDGY-HL  379 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~sp~~~-~l  379 (471)
                      |.|.-||+.+++.+..... ..+..+-.+.-.+.++++|+.||.++.+|.++|+.+-++...... -.-+.+..+|+ ||
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            6788999999988776542 222222223335678889999999999999999999877632211 01134445775 55


Q ss_pred             EEEeC
Q psy11350        380 ATGSE  384 (471)
Q Consensus       380 ~s~s~  384 (471)
                      +..+.
T Consensus       517 ~v~aG  521 (560)
T d1kv9a2         517 AIMAG  521 (560)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            54443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.50  E-value=0.045  Score=52.63  Aligned_cols=220  Identities=10%  Similarity=0.017  Sum_probs=114.0

Q ss_pred             EEEEecCCCEEEEEeC----------------CCcEEEEeCCCCceEEEeecCCC---------CEEEEEEeeCCCCCCc
Q psy11350        157 YCSFSPDSQHVATASW----------------SGLCKLWTVPECELVQTFRGHDC---------NVGAIEFHPLPSEGAV  211 (471)
Q Consensus       157 ~~~~s~~~~~l~tg~~----------------dg~i~iwd~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~  211 (471)
                      .+++.+...+++.+..                ...|.-.|+.+|+.+..++....         ....+.. +.......
T Consensus       245 ~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~-~~~~G~~~  323 (596)
T d1w6sa_         245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKAR  323 (596)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEE
T ss_pred             ccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeec-cccccccc
Confidence            3456677777666542                24577889999999887763211         1111111 22111122


Q ss_pred             cEEEEEeCCCcEEEEeCCCCcceeeecCCCCcc--------------------------------------eEEEEECCC
Q psy11350        212 CSLASCAQDGSVKLWSLDKDTPLANLEGHEPFR--------------------------------------VSRIKFHPS  253 (471)
Q Consensus       212 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------------------------------------v~~~~~s~~  253 (471)
                      ..++....+|.+.++|-.+|+.+...+......                                      -..++++|+
T Consensus       324 ~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~  403 (596)
T d1w6sa_         324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (596)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             cceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCC
Confidence            367889999999999999998775433211100                                      012234444


Q ss_pred             CCEEEEEeCCCeEEecccccccc-CCC-CcceEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeCCCCCeEEEEEe
Q psy11350        254 GRFLGTCCWDHSWRLDTPLANLE-GHE-PFRVSRIKFHPSGRFLGTCCWDHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQ  331 (471)
Q Consensus       254 ~~~i~~~~~d~~~~~~~~~~~~~-~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  331 (471)
                      ..+++....+............. +.. ...-......|.+.... .-.-|.|.-||+.+++.+.... +..+..+-.++
T Consensus       404 ~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~-~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~ls  481 (596)
T d1w6sa_         404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN-YEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMA  481 (596)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT-TBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEE
T ss_pred             CceEEecccccccccccccccccccccccccccccccCcccCccc-CCCcceEEEEeCCCCceecccC-CCCCCccceeE
Confidence            44444443332221111000000 000 00001111112110000 0012679999999998776543 22222222233


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeEEEeccc----CcCEEEEEEcCCCC-EEEEE
Q psy11350        332 GDGSVVATGGLDAFGRVWDLRTGRCIMFLEGH----LKSVFSVDFSPDGY-HLATG  382 (471)
Q Consensus       332 ~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~sp~~~-~l~s~  382 (471)
                      ..|.++++|+.||.++.+|.++|+.+-++...    ..++   .|..+|+ |++..
T Consensus       482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~---tY~~dGkQYvav~  534 (596)
T d1w6sa_         482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM---TYTHKGTQYVAIY  534 (596)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTEEEEEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCe---EEEECCEEEEEEE
Confidence            46778889999999999999999999877632    2333   3444675 45443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.48  E-value=0.2  Score=42.47  Aligned_cols=223  Identities=13%  Similarity=0.162  Sum_probs=142.1

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCC-cceee
Q psy11350        158 CSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKD-TPLAN  236 (471)
Q Consensus       158 ~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~  236 (471)
                      .-.+|..+.||.-+ ..++.++|+++.+.++.+.-. .+|.--.|..+..      |+..+ +..|.-|+++.. .+.+.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~------L~lVT-~taVYHW~~~g~s~P~k~  138 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT------VALVT-DNAVYHWSMEGESQPVKM  138 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSSE------EEEEC-SSEEEEEESSSSCCCEEE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCCE------EEEEc-CCceEEEcccCCCCchhh
Confidence            34678888888766 678999999999888887654 4666666766553      54444 467999999532 46666


Q ss_pred             ecCCC---CcceEEEEECCCCCEEEEEe---CCCe----EEecc----ccccccCCCCcceEEEEECCCC---CEEEEEe
Q psy11350        237 LEGHE---PFRVSRIKFHPSGRFLGTCC---WDHS----WRLDT----PLANLEGHEPFRVSRIKFHPSG---RFLGTCC  299 (471)
Q Consensus       237 ~~~~~---~~~v~~~~~s~~~~~i~~~~---~d~~----~~~~~----~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~  299 (471)
                      +..+.   ...|.....+++.++++..+   .++.    +.+..    ....+.+| ......+.+.-+.   +.|+.+.
T Consensus       139 fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGh-aa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         139 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH-AASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS-EEEEEEECCTTCSSCEEEEEEEE
T ss_pred             hhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccce-eeeeEEEEcCCCCCCceEEEEEE
Confidence            66554   34788888899999876554   2332    33322    23345555 2122222221111   2333332


Q ss_pred             ---cCCeEEEEECCCCc---E------EEEeeCC---CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccC
Q psy11350        300 ---WDHSWRLWDLNQGQ---E------VLHQEGH---GKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHL  364 (471)
Q Consensus       300 ---~dg~i~iwd~~~~~---~------~~~~~~~---~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~  364 (471)
                         ..+.++|.++....   .      +..+...   .+--.++..++....++.-+.-|.|++||+.++.++..-+-..
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~  297 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  297 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCC
Confidence               23678999886521   1      1111111   3344578889888899999999999999999999998777666


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy11350        365 KSVFSVDFSPDGYHLATGSEDNAVKI  390 (471)
Q Consensus       365 ~~v~~~~~sp~~~~l~s~s~dg~i~i  390 (471)
                      ..|..-+-+.+..-+++...+|.|..
T Consensus       298 ~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         298 ETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CceEEeccCCCCceEEEECCCCeEEE
Confidence            77776666655555566667776643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.46  E-value=0.25  Score=43.36  Aligned_cols=205  Identities=11%  Similarity=0.226  Sum_probs=119.5

Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeC---CCCCCccEEEEEe-C-C--CcEEEEeCCCC-c
Q psy11350        161 SPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPL---PSEGAVCSLASCA-Q-D--GSVKLWSLDKD-T  232 (471)
Q Consensus       161 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~~~~~l~s~~-~-d--g~i~iwd~~~~-~  232 (471)
                      .|+..+++.....+-|++||+. |+.+..+.  .+.++.|..-..   +.. .. -++.++ . +  .+|.+|.+... .
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~-~~-di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGK-KV-DIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTE-EE-EEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCc-ce-EEEEEeCCcCcceeEEEEEecCccc
Confidence            3456677777777779999984 88887765  366777665431   111 01 133333 2 2  35777876422 2


Q ss_pred             ceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEE--CCC-CC-EEEEEecCCeEEEEE
Q psy11350        233 PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKF--HPS-GR-FLGTCCWDHSWRLWD  308 (471)
Q Consensus       233 ~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~iwd  308 (471)
                      .+..+.....                            +.  ...  ...+..+|+  ++. +. ++++...+|.+..|.
T Consensus       112 ~l~~~~~~~~----------------------------p~--~~~--~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~  159 (353)
T d1h6la_         112 TLQSITDPNR----------------------------PI--ASA--IDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYE  159 (353)
T ss_dssp             EEEECSCSSS----------------------------CE--ECS--SSSCCCEEEEECTTTCCEEEEEECSSSEEEEEE
T ss_pred             cccccccccc----------------------------cc--ccc--cCcceEEEEEecCCCCeEEEEEEcCCceEEEEE
Confidence            2222221110                            00  000  113556666  664 44 556667788888886


Q ss_pred             CC---CC----cEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----CeeEEEecc--cCcCEEEEEEcC
Q psy11350        309 LN---QG----QEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRT-----GRCIMFLEG--HLKSVFSVDFSP  374 (471)
Q Consensus       309 ~~---~~----~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~-----~~~~~~~~~--h~~~v~~~~~sp  374 (471)
                      +.   .+    +.++.+. -...+..|.+.+....|+.+-.+..|+.++...     +..+....+  ....+..|++-.
T Consensus       160 l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~  238 (353)
T d1h6la_         160 LNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYY  238 (353)
T ss_dssp             EEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEE
T ss_pred             EEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEE
Confidence            63   22    2334443 345788999999888999998887776666542     233333322  356788887653


Q ss_pred             ----CCCEEEEEeCCCcEEEEECCCc-cchheec
Q psy11350        375 ----DGYHLATGSEDNAVKIWDLRKR-RLLKWCT  403 (471)
Q Consensus       375 ----~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~  403 (471)
                          +|.+|+|.-.+++..|||.... +.+..|.
T Consensus       239 ~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         239 AADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence                3455666667889999998763 5554443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.25  E-value=0.064  Score=51.29  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             CeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCeeEEEecccCcCE-EEEEEcCCCC-EE
Q psy11350        302 HSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGGLDAFGRVWDLRTGRCIMFLEGHLKSV-FSVDFSPDGY-HL  379 (471)
Q Consensus       302 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~~~~sp~~~-~l  379 (471)
                      |.|.-||+.+++.+....... +...-..+-.|.+|++|+.||.++.+|.++|+.+-++....+.. .-+.|..+|+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578899999998887664322 22222233467789999999999999999999998776322110 0134445776 44


Q ss_pred             EEE
Q psy11350        380 ATG  382 (471)
Q Consensus       380 ~s~  382 (471)
                      +..
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.42  Score=40.49  Aligned_cols=216  Identities=8%  Similarity=0.101  Sum_probs=130.9

Q ss_pred             CCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECC
Q psy11350        173 SGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHP  252 (471)
Q Consensus       173 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~  252 (471)
                      ..+|.|.|+.++..+..-.-   .--+.-.+|..+     .|+.-+ ..+++++|+++.+.++.+....  .|.--.|-.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~-----IiALra-g~~LQiFnletK~klks~~~~e--~VvfWkWis  112 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASK-----VIALKA-GKTLQIFNIEMKSKMKAHTMTD--DVTFWKWIS  112 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSS-----EEEEEE-TTEEEEEETTTTEEEEEEECSS--CCCEEEESS
T ss_pred             CceEEEEECCCCCcceeccc---chhhhhcCCCCc-----EEEEec-CCeEEEEehhHhhhhceEEcCC--CcEEEEecC
Confidence            45788999876553322111   112445677776     455444 5789999999999998888776  454455544


Q ss_pred             CCCEEEEEeCCCe--EEec---cccccccCC---CCcceEEEEECCCCCEEEEEec-------CCeEEEEECCCCcEEEE
Q psy11350        253 SGRFLGTCCWDHS--WRLD---TPLANLEGH---EPFRVSRIKFHPSGRFLGTCCW-------DHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       253 ~~~~i~~~~~d~~--~~~~---~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~  317 (471)
                      +. .|+..+....  |.+.   .|...+..|   ....|-.-..+++.++++..+-       .|.+.+|..+.. .-+.
T Consensus       113 ~~-~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~  190 (327)
T d1utca2         113 LN-TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP  190 (327)
T ss_dssp             SS-EEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEE
T ss_pred             CC-EEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcc
Confidence            43 3333333333  4442   122222222   1346777888889998775432       367899998764 4566


Q ss_pred             eeCCCCCeEEEEEeCC--C-CEEEEE---eCCCeEEEEeCCCCe---e-----EEEe-c---ccCcCEEEEEEcCCCCEE
Q psy11350        318 QEGHGKPVYCMSFQGD--G-SVVATG---GLDAFGRVWDLRTGR---C-----IMFL-E---GHLKSVFSVDFSPDGYHL  379 (471)
Q Consensus       318 ~~~~~~~v~~~~~s~d--~-~~l~t~---~~dg~i~iwd~~~~~---~-----~~~~-~---~h~~~v~~~~~sp~~~~l  379 (471)
                      ++||......+.+..+  . .+++.+   ...+.++|.++....   +     ...+ .   ...+-..++..|+.-..+
T Consensus       191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii  270 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  270 (327)
T ss_dssp             ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred             ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence            7777655444443221  1 122222   233678888876421   1     1111 1   123457788888877888


Q ss_pred             EEEeCCCcEEEEECCCccchhe
Q psy11350        380 ATGSEDNAVKIWDLRKRRLLKW  401 (471)
Q Consensus       380 ~s~s~dg~i~iwd~~~~~~~~~  401 (471)
                      +.-+.-|.|.+||+.++.++..
T Consensus       271 yviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         271 FLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEecCcEEEEEEcccccEEEE
Confidence            8889999999999999998863

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.39  Score=42.62  Aligned_cols=142  Identities=8%  Similarity=-0.025  Sum_probs=85.7

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      .|..++|+.|  .|+... ++.+..++...-........-..++..+.++|.       .++....+|.+.++++..+..
T Consensus        88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-------~~~l~~~~~~~~~~~l~~~~~  157 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-------TLVILNSVNDLSALDLRTKST  157 (381)
T ss_dssp             TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-------EEEEEETTSEEEEEETTTCCE
T ss_pred             CeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCCc-------eeEEEecCCCEEEEEeccCcc
Confidence            5888999754  566554 667888887765544444445677888888875       467778889999999987753


Q ss_pred             eeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCCeEEEE-ECCCC
Q psy11350        234 LANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLW-DLNQG  312 (471)
Q Consensus       234 ~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw-d~~~~  312 (471)
                      .....     .+.++.|+                             ..+.+++|++.|..++++..++ ..+- ++...
T Consensus       158 ~~~~~-----~v~~~~~~-----------------------------~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~  202 (381)
T d1xipa_         158 KQLAQ-----NVTSFDVT-----------------------------NSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLP  202 (381)
T ss_dssp             EEEEE-----SEEEEEEC-----------------------------SSEEEEEETTSCEEEEEEETTE-EEEEEEECCC
T ss_pred             ccccC-----CcceEEec-----------------------------CCceEEEEeCCcEEEEEeCCCc-eeeccCCCCc
Confidence            32221     34455553                             2478888888888887764322 1111 11111


Q ss_pred             cEEEEeeCCCCCeEEEEEeCCCCEEEEE
Q psy11350        313 QEVLHQEGHGKPVYCMSFQGDGSVVATG  340 (471)
Q Consensus       313 ~~~~~~~~~~~~v~~~~~s~d~~~l~t~  340 (471)
                      ..+.........|.+|.|-.+..++++-
T Consensus       203 ~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         203 SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            1110011233467788887666655544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=1.1  Score=39.67  Aligned_cols=176  Identities=11%  Similarity=-0.068  Sum_probs=96.2

Q ss_pred             CeEEEEEecCCCEEEEEeCCCcEEEEeCCC-----------CceEEEeecCCCCEEEEEEeeCCCCCCccEEEEEeCCCc
Q psy11350        154 PISYCSFSPDSQHVATASWSGLCKLWTVPE-----------CELVQTFRGHDCNVGAIEFHPLPSEGAVCSLASCAQDGS  222 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  222 (471)
                      ..+-+++++...+|+.|+.++ ++|-.+..           ........  -..|..++|+.+       .|+.. .++.
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d-------~l~v~-~~~~  106 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD-------QVLVS-TRNA  106 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT-------EEEEE-ESSE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC-------EEEEE-eCCC
Confidence            456678898888898888664 66665321           11111111  236888888744       23333 4456


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCCCEEEEEecCC
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDH  302 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  302 (471)
                      +..++...-.........                                       ..++..+.++|.  .++....+|
T Consensus       107 l~~~~~~~l~~~~~~~~~---------------------------------------~~~~~~~~~~p~--~~~l~~~~~  145 (381)
T d1xipa_         107 LYSLDLEELSEFRTVTSF---------------------------------------EKPVFQLKNVNN--TLVILNSVN  145 (381)
T ss_dssp             EEEEESSSTTCEEEEEEC---------------------------------------SSCEEEEEECSS--EEEEEETTS
T ss_pred             EEEEEeeccccccccccc---------------------------------------cccccceecCCc--eeEEEecCC
Confidence            777776543222111100                                       124667777764  466677789


Q ss_pred             eEEEEECCCCcEEEEeeC-----CCCCeEEEEEeCCCCEEEEEeCCCeEEEE-eCCCCeeEEEecccCcCEEEEEEcCCC
Q psy11350        303 SWRLWDLNQGQEVLHQEG-----HGKPVYCMSFQGDGSVVATGGLDAFGRVW-DLRTGRCIMFLEGHLKSVFSVDFSPDG  376 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~t~~~dg~i~iw-d~~~~~~~~~~~~h~~~v~~~~~sp~~  376 (471)
                      .+.++++..++......+     -...+.+++|++.|..++++..++ ..+- ++.....+.........|.+|.|..+.
T Consensus       146 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         146 DLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             EEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             CEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCc
Confidence            999999988754322111     135577788887777777764332 1111 111111000001133468899998766


Q ss_pred             CEEEEE
Q psy11350        377 YHLATG  382 (471)
Q Consensus       377 ~~l~s~  382 (471)
                      .++++-
T Consensus       225 ~F~vvy  230 (381)
T d1xipa_         225 DFLAVF  230 (381)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            666554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.49  Score=39.84  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             CCEEEEEecC-----CeEEEEECCCCcEEEEeeC-CCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCeeEEEe
Q psy11350        292 GRFLGTCCWD-----HSWRLWDLNQGQEVLHQEG-HGKPVYCMSFQGDGSVVATGGLD-----AFGRVWDLRTGRCIMFL  360 (471)
Q Consensus       292 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~~~d-----g~i~iwd~~~~~~~~~~  360 (471)
                      +..++.|+.+     ..+..||..+.+....-.. ......++... ++.+++.|+.+     ....++|..+.+....-
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeeccc
Confidence            4455555543     3478888877643322111 11111222332 45666666544     34677887766543221


Q ss_pred             cccCcCE-EEEEEcCCCCEEEEEeCCCc-----EEEEECCCcc
Q psy11350        361 EGHLKSV-FSVDFSPDGYHLATGSEDNA-----VKIWDLRKRR  397 (471)
Q Consensus       361 ~~h~~~v-~~~~~sp~~~~l~s~s~dg~-----i~iwd~~~~~  397 (471)
                      ....... .+++. .++++++.|+.++.     |.+||+.+.+
T Consensus       228 ~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         228 PMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            1111111 12222 26778888775543     7788888754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.45  E-value=1.6  Score=39.22  Aligned_cols=198  Identities=15%  Similarity=0.086  Sum_probs=102.8

Q ss_pred             CEEEEEEeeCCCCCCccEEEEEeCCC----cEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCe------
Q psy11350        196 NVGAIEFHPLPSEGAVCSLASCAQDG----SVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------  265 (471)
Q Consensus       196 ~v~~l~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~------  265 (471)
                      .+..++++|++..    ++++-+.+|    .|++.|+.+++.+.......  ....++|++|++.|+....+..      
T Consensus       126 ~~~~~~~Spd~~~----la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~--~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         126 ALRGYAFSEDGEY----FAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             EEEEEEECTTSSE----EEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             eecceEecCCCCE----EEEEeccccCchheeEEeccCcceecccccccc--cccceEEcCCCCEEEEEEeccccCcccc
Confidence            3456678888873    344444444    59999999998664321111  2356899999998876654311      


Q ss_pred             ----------E---Eecccc----ccccCC-CCcceEEEEECCCCCEEEEEec---CCe--EEEEECCCCc--------E
Q psy11350        266 ----------W---RLDTPL----ANLEGH-EPFRVSRIKFHPSGRFLGTCCW---DHS--WRLWDLNQGQ--------E  314 (471)
Q Consensus       266 ----------~---~~~~~~----~~~~~~-~~~~v~~l~~~~~~~~l~~~~~---dg~--i~iwd~~~~~--------~  314 (471)
                                +   ++.+..    ..+... ....+..+..++++++++....   ++.  +.+.|+....        .
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                      1   112211    111221 1234667888999998765433   233  4444543321        1


Q ss_pred             EEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCee--EEE-ecccCcCEEEEEEcCCCCEEEEE-eCCC-
Q psy11350        315 VLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGRC--IMF-LEGHLKSVFSVDFSPDGYHLATG-SEDN-  386 (471)
Q Consensus       315 ~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~--~~~-~~~h~~~v~~~~~sp~~~~l~s~-s~dg-  386 (471)
                      ..........+.-+. +.++.+++...   .++.|...++.....  ... +..+...+..-.+...+.+|+.. -.++ 
T Consensus       280 ~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            122222223333222 22333333332   345677777765421  122 33344555544444444555544 4554 


Q ss_pred             -cEEEEECCCccchh
Q psy11350        387 -AVKIWDLRKRRLLK  400 (471)
Q Consensus       387 -~i~iwd~~~~~~~~  400 (471)
                       .|+++++..++...
T Consensus       359 ~~l~v~~~~~~~~~~  373 (430)
T d1qfma1         359 NTLQLHDLATGALLK  373 (430)
T ss_dssp             EEEEEEETTTCCEEE
T ss_pred             eEEEEEECCCCcEEE
Confidence             48889998887644

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.44  E-value=0.26  Score=43.82  Aligned_cols=112  Identities=20%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             EEECCCCCEEEEEecCC-----------eEEEEECCCCcEEE---EeeCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEe
Q psy11350        286 IKFHPSGRFLGTCCWDH-----------SWRLWDLNQGQEVL---HQEGHGKPVYCMSFQGDGSVVATGGLD-AFGRVWD  350 (471)
Q Consensus       286 l~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~t~~~d-g~i~iwd  350 (471)
                      .....+|+.++.|+.+.           .+.+||..+++-..   ....|.......++.++|.+++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33445667666666421           37789998875321   122343334466788999999998765 5799999


Q ss_pred             CCCCeeEEEeccc-CcCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCcc
Q psy11350        351 LRTGRCIMFLEGH-LKSVFSVDFSPDGYHLATGSED------NAVKIWDLRKRR  397 (471)
Q Consensus       351 ~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~d------g~i~iwd~~~~~  397 (471)
                      ..+..-...-... ...-.+.+..+||++++.|+.+      ..+.+||..+.+
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            9877543211111 1122356677899999988753      358999987754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.17  E-value=1.6  Score=37.95  Aligned_cols=185  Identities=13%  Similarity=0.090  Sum_probs=101.2

Q ss_pred             CeEEEEEecCCCEEEEEeC------------CCcEEEEeCCCCceE-EEee--cC-----CCCEEEEEEeeCCCCCCccE
Q psy11350        154 PISYCSFSPDSQHVATASW------------SGLCKLWTVPECELV-QTFR--GH-----DCNVGAIEFHPLPSEGAVCS  213 (471)
Q Consensus       154 ~V~~~~~s~~~~~l~tg~~------------dg~i~iwd~~~~~~~-~~~~--~h-----~~~v~~l~~~~~~~~~~~~~  213 (471)
                      .--.+...|+|..+++++.            .|.|.++|+.+.+.. ..+.  +.     .-....+....+.. +.. +
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~d-g~~-~  113 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD-NTV-Y  113 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTT-CCE-E
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCC-CcE-E
Confidence            3446788899877766542            489999998764322 1221  11     11234555433221 111 3


Q ss_pred             EEEEe---CCCcEEEEeCCCCc----ceeeecCCCCcceEEEEECCCCCEEEEEeCCCe------------------EEe
Q psy11350        214 LASCA---QDGSVKLWSLDKDT----PLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHS------------------WRL  268 (471)
Q Consensus       214 l~s~~---~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~------------------~~~  268 (471)
                      |++..   ...+|.+|++....    .+..+........+++++..++.++++-.....                  +..
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            44443   45678888875433    223344444456889999999988887421111                  111


Q ss_pred             ccccccccCCCCcceEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEE--eeCCCCCeEEEEEeC-CCCEEEEE
Q psy11350        269 DTPLANLEGHEPFRVSRIKFHPSGRFLGTC-CWDHSWRLWDLNQGQEVLH--QEGHGKPVYCMSFQG-DGSVVATG  340 (471)
Q Consensus       269 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~-d~~~l~t~  340 (471)
                      ...........-.....|+++|++++|+++ +..+.|++|++.....+..  ...-....-.+.+.+ +|.+.+++
T Consensus       194 ~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         194 SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             cCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            111111111112246789999999877665 4567899999875432221  112234456777876 45555444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.14  E-value=2  Score=38.97  Aligned_cols=110  Identities=16%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             cCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEee--------cCCCCEEEEEEeeCCCCCCccEEEEE-e----C
Q psy11350        153 RPISYCSFSPDSQHVATASWSGLCKLWTVPECELVQTFR--------GHDCNVGAIEFHPLPSEGAVCSLASC-A----Q  219 (471)
Q Consensus       153 ~~V~~~~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~~~~~l~s~-~----~  219 (471)
                      ...++|+|.|||++|++--..|.|++++..++.......        .-......|+++|+-......++.-. .    .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            466799999999988877557999999987765443221        11356789999997544333222211 1    0


Q ss_pred             C----Cc--EEEEeCCCCcc--------eeeecCCCCcceEEEEECCCCCEEEEEeC
Q psy11350        220 D----GS--VKLWSLDKDTP--------LANLEGHEPFRVSRIKFHPSGRFLGTCCW  262 (471)
Q Consensus       220 d----g~--i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~i~~~~~  262 (471)
                      +    +.  +..+.......        +........-....+.|.|||.++++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    11  22333222211        11112222225678999999987776664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.16  E-value=1.1  Score=39.01  Aligned_cols=102  Identities=14%  Similarity=-0.048  Sum_probs=59.6

Q ss_pred             CcceEEEEECCCCCEEEEEec---------------CCeEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEE-eCC
Q psy11350        280 PFRVSRIKFHPSGRFLGTCCW---------------DHSWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATG-GLD  343 (471)
Q Consensus       280 ~~~v~~l~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~-~~d  343 (471)
                      ......+.+..++.+++|-..               -++-.+|....++...... .-...+.|+++||+++|+++ +..
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~  227 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLA  227 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGG
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCC
Confidence            345788888888887777311               0223344333333322222 23457899999999876655 567


Q ss_pred             CeEEEEeCCCCeeEEEe--cccCcCEEEEEEcC-CCCEEEEE
Q psy11350        344 AFGRVWDLRTGRCIMFL--EGHLKSVFSVDFSP-DGYHLATG  382 (471)
Q Consensus       344 g~i~iwd~~~~~~~~~~--~~h~~~v~~~~~sp-~~~~l~s~  382 (471)
                      +.|++|++.....+...  ..-.+.+-.+.+.+ +|.+.+.+
T Consensus       228 ~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         228 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            88999998754322211  11235577888876 44544443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.54  E-value=4.9  Score=34.79  Aligned_cols=145  Identities=10%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeCCCeEEeccccccccCCCCcceEEEEECCCC
Q psy11350        213 SLASCAQDGSVKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCWDHSWRLDTPLANLEGHEPFRVSRIKFHPSG  292 (471)
Q Consensus       213 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  292 (471)
                      +++.....+-|.+||+ .|+.+..+...   .++.+..                                ...+.+....
T Consensus        42 lI~gTdK~~Gl~vYdL-~G~~l~~~~~G---r~NNVDv--------------------------------r~~~~l~~~~   85 (353)
T d1h6la_          42 KLITTNKKSGLAVYSL-EGKMLHSYHTG---KLNNVDI--------------------------------RYDFPLNGKK   85 (353)
T ss_dssp             EEEEEETTSCCEEEET-TCCEEEECCSS---CEEEEEE--------------------------------EEEEEETTEE
T ss_pred             EEEEEcCcCCEEEEcC-CCcEEEecccC---CcCcccc--------------------------------ccccccCCcc
Confidence            5666667777999998 47766665432   2222111                                1122222222


Q ss_pred             CEEEEEec--C--CeEEEEECCC-CcEEEEeeCC-------CCCeEEEEE--eCC-CC-EEEEEeCCCeEEEEeCC---C
Q psy11350        293 RFLGTCCW--D--HSWRLWDLNQ-GQEVLHQEGH-------GKPVYCMSF--QGD-GS-VVATGGLDAFGRVWDLR---T  353 (471)
Q Consensus       293 ~~l~~~~~--d--g~i~iwd~~~-~~~~~~~~~~-------~~~v~~~~~--s~d-~~-~l~t~~~dg~i~iwd~~---~  353 (471)
                      ..+++++.  +  .+|.+|.+.. ...+..+...       ...++.+|+  ++. |. ++++...+|.+..|.+.   .
T Consensus        86 ~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~  165 (353)
T d1h6la_          86 VDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKN  165 (353)
T ss_dssp             EEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred             eEEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCC
Confidence            23444442  1  2577776642 2233333221       123666776  664 44 56677788999888663   2


Q ss_pred             C----eeEEEecccCcCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy11350        354 G----RCIMFLEGHLKSVFSVDFSPDGYHLATGSEDNAVKIWDLR  394 (471)
Q Consensus       354 ~----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~i~iwd~~  394 (471)
                      +    +.+..+. -...+..|.+.+....|+.+-.+.-|..+++.
T Consensus       166 g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         166 GYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             SSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             CceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEec
Confidence            3    3444454 34578999999988899998777666555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.32  E-value=8.5  Score=34.52  Aligned_cols=34  Identities=9%  Similarity=0.016  Sum_probs=25.5

Q ss_pred             CCEEEEEEeeCCCCCCccEEEEEeCCCcEEEEeCCCCcc
Q psy11350        195 CNVGAIEFHPLPSEGAVCSLASCAQDGSVKLWSLDKDTP  233 (471)
Q Consensus       195 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  233 (471)
                      ...++|+|.|++.     +|++--..|.|++++..++..
T Consensus        27 ~~P~~la~~pdg~-----llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          27 NKPHALLWGPDNQ-----IWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             SSEEEEEECTTSC-----EEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEeCCCe-----EEEEEecCCEEEEEECCCCcE
Confidence            4667999999997     555543479999998776653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.19  E-value=5.8  Score=31.36  Aligned_cols=211  Identities=14%  Similarity=0.095  Sum_probs=99.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEeecCCCCEEEEEEeeCCCCCCccEEEE------EeCCCcEEEEeCCCCcceee
Q psy11350        163 DSQHVATASWSGLCKLWTVPECELVQTFRGHDCNVGAIEFHPLPSEGAVCSLAS------CAQDGSVKLWSLDKDTPLAN  236 (471)
Q Consensus       163 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s------~~~dg~i~iwd~~~~~~~~~  236 (471)
                      +.++|+++...|.+.++-+..++.+..-   ..+|... -.|...  .. .+..      |-.-..|.+-++........
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~-~~Pk~~--ld-fi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~   97 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSV-LDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR   97 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEE-CEECTT--BS-EEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCc-CCCccC--cc-eEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence            3457888878999999988877766533   2333221 122211  00 1111      11112344444443233333


Q ss_pred             ecCCCCcceEEEEECCCCCEEEEEeCCCe--EEec-cccccccCC---------CCcceEEEEE-CCCCCEEEEEec-CC
Q psy11350        237 LEGHEPFRVSRIKFHPSGRFLGTCCWDHS--WRLD-TPLANLEGH---------EPFRVSRIKF-HPSGRFLGTCCW-DH  302 (471)
Q Consensus       237 ~~~~~~~~v~~~~~s~~~~~i~~~~~d~~--~~~~-~~~~~~~~~---------~~~~v~~l~~-~~~~~~l~~~~~-dg  302 (471)
                      +....+..|.++++....-.+.-++.|++  +.+. .....+..-         ...-|..+.+ .+..+-|+++.. .|
T Consensus        98 i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1          98 LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             ecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC
Confidence            44444345666665544333444445554  1111 111111100         0112333333 222233444444 55


Q ss_pred             eEEEEECCCCcEEEEeeCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCeeEEE-ecc------cCcCEEEEEE
Q psy11350        303 SWRLWDLNQGQEVLHQEGHGKPVYCMSFQGDGSVVATGG---LDAFGRVWDLRTGRCIMF-LEG------HLKSVFSVDF  372 (471)
Q Consensus       303 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~~---~dg~i~iwd~~~~~~~~~-~~~------h~~~v~~~~~  372 (471)
                      .++|++...           +.++...++++.+. +++-   ......-+|+++++.-.. +..      ..-.|+-+-+
T Consensus       178 ~lri~tpke-----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         178 GLRVFDSGE-----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEECCSS-----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             CEEEecCCC-----------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence            566655444           44555555554443 3221   112222447776643321 111      1235777778


Q ss_pred             cCCCCEEEEEeCCCcEEEEE
Q psy11350        373 SPDGYHLATGSEDNAVKIWD  392 (471)
Q Consensus       373 sp~~~~l~s~s~dg~i~iwd  392 (471)
                      .|++++++.+-.||.-++|.
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEecCCchheee
Confidence            99999888888899888886

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.06  E-value=6.7  Score=30.98  Aligned_cols=145  Identities=17%  Similarity=0.205  Sum_probs=85.7

Q ss_pred             CeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEee--c-------CCCCEEEEEEeeCCCCCCccEEEEEeC-CCc
Q psy11350        154 PISYCSFSPDS-QHVATASWSGLCKLWTVPECELVQTFR--G-------HDCNVGAIEFHPLPSEGAVCSLASCAQ-DGS  222 (471)
Q Consensus       154 ~V~~~~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~--~-------h~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~  222 (471)
                      +|.-++..-|+ +.+++|+......+|-++.|+......  +       ....|..+.+...+..    -++++.. .|.
T Consensus       103 ~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~----sfF~adl~SG~  178 (313)
T d2hu7a1         103 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV----SLFTSNLSSGG  178 (313)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEE----EEEEEETTTEE
T ss_pred             eEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcc----eEEEEecccCC
Confidence            34444444454 456688888888888888776543221  1       1244556666554432    3555555 788


Q ss_pred             EEEEeCCCCcceeeecCCCCcceEEEEECCCCCEEEEEeC-------------CCeE-EeccccccccCCCCcceEEEEE
Q psy11350        223 VKLWSLDKDTPLANLEGHEPFRVSRIKFHPSGRFLGTCCW-------------DHSW-RLDTPLANLEGHEPFRVSRIKF  288 (471)
Q Consensus       223 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~i~~~~~-------------d~~~-~~~~~~~~~~~~~~~~v~~l~~  288 (471)
                      ++|++...|            .++...+++..+. ++...             ++.+ ++.-+...+..-.+..|+-+-+
T Consensus       179 lri~tpkeG------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         179 LRVFDSGEG------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEECCSSE------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             EEEecCCCC------------cccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence            888887666            5555555555554 22211             1111 1122222232223446777889


Q ss_pred             CCCCCEEEEEecCCeEEEEECCCCcEEEE
Q psy11350        289 HPSGRFLGTCCWDHSWRLWDLNQGQEVLH  317 (471)
Q Consensus       289 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  317 (471)
                      .|++++++.+-.||.=++|.  .|+.+..
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             CCCCcEEEEEecCCchheee--cceEecC
Confidence            99999999999999999987  5555543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=6.9  Score=32.08  Aligned_cols=63  Identities=14%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             CCEEEEEecC-----CeEEEEECCCCcEEEEeeCCCCCe-EEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCe
Q psy11350        292 GRFLGTCCWD-----HSWRLWDLNQGQEVLHQEGHGKPV-YCMSFQGDGSVVATGGLDA-----FGRVWDLRTGR  355 (471)
Q Consensus       292 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~d~~~l~t~~~dg-----~i~iwd~~~~~  355 (471)
                      +..++.++.+     ..+..+|..+.+....-....... .+++. .++++++.|+.++     .|.+||+.+.+
T Consensus       196 ~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         196 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            4455555444     346778887765433222111111 12333 3678888887654     37888888653