Psyllid ID: psy11351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEcccccccEEEEEEcccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEccccccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccEEEEEcccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEEcccccccEEEcccccEEEEEEccccccEEEEEcccccEEEEEccccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEcEEEEEEEEEEcccccEEEEEcccccEEEEEcccccEEEcccEEEEEccccEEEEccc
Coil and Loop (DISEMBL)
MASGDPIKVLRVignddhvishdmasgdpidfylherpvyglsvdpsqdAIFASACDDGRVLLFDTRSREEATElavnsgpfhavmfnPVEARLVATAnskdgialydtrkpkevlmqygscescmSIRFNKAGtqllglrrrlppvlyntrssspvaqfdhegyynsctmksccfagtqdeyvvsgsddFVLYMwrvprddiyvssdiyvcrhgslevsilpa
Flexible Loop (DISEMBL)
MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAtelavnsgpfhAVMFNPVEARLVATAnskdgialydtrkpkEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA
Low Complexity Region (SEG)
MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQllglrrrlPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA
Disordered region (IsUnstruct)
******IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVS****
Disordered Region (DISOPRED)
MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA
Disordered Region (DISEMBL)
MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA
Disordered Region (DISPRO)
**SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSIL*A
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q96JK2	942	DDB1- and CUL4-associated	yes	N/A	0.839	0.199	0.595	6e-64
Q80T85	946	DDB1- and CUL4-associated	yes	N/A	0.839	0.198	0.590	2e-63
Q5U2M6	591	DDB1- and CUL4-associated	no	N/A	0.718	0.272	0.274	2e-07
Q5R448	597	DDB1- and CUL4-associated	no	N/A	0.718	0.269	0.263	2e-07
Q5TAQ9	597	DDB1- and CUL4-associated	no	N/A	0.718	0.269	0.274	2e-07
Q8N7N5	591	DDB1- and CUL4-associated	no	N/A	0.718	0.272	0.274	2e-07
O22468	415	WD-40 repeat-containing p	yes	N/A	0.683	0.368	0.232	6e-07
P0C7V8	602	DDB1- and CUL4-associated	no	N/A	0.718	0.267	0.263	4e-06
Q6NRH1	601	DDB1- and CUL4-associated	N/A	N/A	0.718	0.267	0.258	4e-06
Q5U4F6	535	WD repeat-containing prot	no	N/A	0.495	0.207	0.290	8e-06

>sp|Q96JK2|DCAF5_HUMAN DDB1- and CUL4-associated factor 5 OS=Homo sapiens GN=DCAF5 PE=1 SV=2

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 300 DDFNLYMWRIPAD 312

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Homo sapiens (taxid: 9606)

>sp|Q80T85|DCAF5_MOUSE DDB1- and CUL4-associated factor 5 OS=Mus musculus GN=Dcaf5 PE=1 SV=2

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMW++P D
Sbjct: 300 DDFNLYMWKIPAD 312

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-----FHAVMFNP 89
           H+   + L+++P     F SA +D  V   D R    A++L V          + +  NP
Sbjct: 276 HKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNP 335

Query: 90  VEARLVATANSKDGIALYDTRKPKE-----VLMQYG-----SCESCMSIR---FNKAGTQ 136
                 A       + +YD RK  E     VL ++      + ES  +I    ++  GT+
Sbjct: 336 ANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTE 395

Query: 137 LLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
           LL         L+N+ S S  AQ+   ++G+ N+ T+K   F G + E+VVSGSD   ++
Sbjct: 396 LLASYNDEDIYLFNS-SHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIF 454

Query: 195 MW 196
           +W
Sbjct: 455 LW 456

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 21/182 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-----FHAVMFNP 89
           H+   + L+++P     F SA +D  V   D R    A++L V          + +  NP
Sbjct: 282 HKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNP 341

Query: 90  VEARLVATANSKDGIALYDTRKPKE-----VLMQY-------GSCESCMS-IRFNKAGTQ 136
                 A       + +YD RK  E     VL ++       G  ++ ++ + ++  GT+
Sbjct: 342 ANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNGESKANITCLVYSHDGTE 401

Query: 137 LLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
           LL         L+N+ S S  AQ+   ++G+ N+ T+K   F G + E+VVSGSD   ++
Sbjct: 402 LLASYNDEDIYLFNS-SHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIF 460

Query: 195 MW 196
           +W
Sbjct: 461 LW 462

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-----FHAVMFNP 89
           H+   + L+++P     F SA +D  V   D R    A++L V          + +  NP
Sbjct: 282 HKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNP 341

Query: 90  VEARLVATANSKDGIALYDTRKPKE-----VLMQYG-----SCESCMSIR---FNKAGTQ 136
                 A       + +YD RK  E     VL ++      + ES  +I    ++  GT+
Sbjct: 342 ANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTE 401

Query: 137 LLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
           LL         L+N+ S S  AQ+   ++G+ N+ T+K   F G + E+VVSGSD   ++
Sbjct: 402 LLASYNDEDIYLFNS-SHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIF 460

Query: 195 MW 196
           +W
Sbjct: 461 LW 462

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-----FHAVMFNP 89
           H+   + L+++P     F SA +D  V   D R    A++L V          + +  NP
Sbjct: 276 HKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNP 335

Query: 90  VEARLVATANSKDGIALYDTRKPKE-----VLMQYG-----SCESCMSIR---FNKAGTQ 136
                 A       + +YD RK  E     VL ++      + ES  +I    ++  GT+
Sbjct: 336 ANTHQFAVGGRDQYVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTE 395

Query: 137 LLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
           LL         L+N+ S S  AQ+   ++G+ N+ T+K   F G + E+VVSGSD   ++
Sbjct: 396 LLASYNDEDIYLFNS-SHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIF 454

Query: 195 MW 196
           +W
Sbjct: 455 LW 456

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|O22468|MSI2_ARATH WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 36/189 (19%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
           HE  +  +S     + +F SA +DGR++++DTR+ +   ++ V+    + + FNP    +
Sbjct: 216 HESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWV 275

Query: 95  VATANSKDGIALYDTRK-----------------------PKEVLMQYGSCESCMSIRFN 131
           +ATA+S   +AL+D RK                        + VL   G     M    N
Sbjct: 276 LATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLN 335

Query: 132 KAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE--YVVSGSD 189
           + G + L +         +     P   F H G+      K   FA  ++E   + S ++
Sbjct: 336 RVGEEQLEIE-------LDAEDGPPELLFSHGGH----KAKISDFAWNKNEPWVIASVAE 384

Query: 190 DFVLYMWRV 198
           D  L +W++
Sbjct: 385 DNSLQVWQM 393

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C7V8|DC8L2_HUMAN DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-----FHAVMFNP 89
           H  P + L+++P     F ++ +D  V   D R    A+++ V          + +  NP
Sbjct: 288 HRGPAHKLALEPDSPYKFLTSGEDAVVFTIDLRQDRPASKVVVTRENDKKVGLYTITVNP 347

Query: 90  VEARLVATANSKDGIALYDTRK--PKE---VLMQYG-----SCESCMSIR---FNKAGTQ 136
                 A       + +YD RK   KE   VL ++      +C+   +I    ++  GT+
Sbjct: 348 ANTYQFAVGGQDQFVRIYDQRKIDKKENNGVLKKFTPHHLVNCDFPTNITCVVYSHDGTE 407

Query: 137 LLGLRRRLPPVLYNTRSSSPVAQFDH--EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
           LL         L+N+ S S  AQ+    +G+ N+ T+K   F G + E+VVSGSD   ++
Sbjct: 408 LLASYNDDDIYLFNS-SHSDGAQYSKRFKGHRNNTTVKGVNFYGPRSEFVVSGSDCGHIF 466

Query: 195 MW 196
            W
Sbjct: 467 FW 468

Homo sapiens (taxid: 9606)

>sp|Q6NRH1|DCAF8_XENLA DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 21/182 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-----FHAVMFNP 89
           H+   + L+++P     F SA +D  V   D R    A+ L V          + +  NP
Sbjct: 285 HKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASRLVVTKEKESKVGLYTIYVNP 344

Query: 90  VEARLVATANSKDGIALYDTRKPKE-----VLMQYG-----SCESCMSIR---FNKAGTQ 136
                 A       + +YD RK  E     VL ++      + E+  +I    ++  G++
Sbjct: 345 ANTYQFAVGGRDQFVRIYDQRKINENVNNGVLKKFCPHHLVTSEAKANITCLVYSHDGSE 404

Query: 137 LLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
           LL         L+N+ S S  A++   ++G+ N+ T+K   F G + E+VVSGSD   ++
Sbjct: 405 LLASYNDEDIYLFNS-SHSDGAEYIKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIF 463

Query: 195 MW 196
           +W
Sbjct: 464 LW 465

Xenopus laevis (taxid: 8355)

>sp|Q5U4F6|WDR34_MOUSE WD repeat-containing protein 34 OS=Mus musculus GN=Wdr34 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 29  PIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM 86
           P+ F    H  PVY +S  P    +F SA  DG V L+     +  T L ++     AV 
Sbjct: 382 PVQFTFSPHGGPVYSVSCSPFHRNLFLSAGTDGHVHLYSMLQAQPLTSLQLSHKYLFAVR 441

Query: 87  FNPVEARLVATANSKDGIALYD----TRKPKEVLMQYGSCESCMSIRFNKAGTQLLG 139
           ++PV   + A A+ +  + L+D    ++KP   + Q         + FN   TQLL 
Sbjct: 442 WSPVRPLVFAAASGEGDVQLFDLQKSSQKPTVSITQTQDGSPVYCLEFNSQQTQLLA 498

Acts as a negative regulator of the Toll-like and IL-1R receptor signaling pathways. Inhibits the MAP3K7-induced NF-kappa-B activation pathway. Inhibits MAP3K7 phosphorylation at 'Thr-184' and 'Thr-187' upon Il-1 beta stimulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
345487538	886	PREDICTED: hypothetical protein LOC10011	0.843	0.213	0.571	3e-66
432107116	927	Alpha-actinin-1 [Myotis davidii]	0.839	0.202	0.595	5e-63
383847829	765	PREDICTED: DDB1- and CUL4-associated fac	0.892	0.261	0.601	7e-63
327280348	893	PREDICTED: DDB1- and CUL4-associated fac	0.839	0.210	0.590	9e-63
197100342	860	DDB1- and CUL4-associated factor 5 [Pong	0.839	0.218	0.595	3e-62
355778691	879	hypothetical protein EGM_16752, partial	0.839	0.213	0.595	3e-62
148234935	936	DDB1 and CUL4 associated factor 5 [Xenop	0.839	0.200	0.585	3e-62
403264510	942	PREDICTED: DDB1- and CUL4-associated fac	0.839	0.199	0.595	3e-62
119601385	860	WD repeat domain 22, isoform CRA_a [Homo	0.839	0.218	0.595	3e-62
344273521	880	PREDICTED: DDB1- and CUL4-associated fac	0.839	0.213	0.595	3e-62

>gi|345487538|ref|XP_001601625.2| PREDICTED: hypothetical protein LOC100117364 [Nasonia vitripennis]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 152/196 (77%), Gaps = 7/196 (3%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GNDD VI HD+ + D ++F+ HE+PVYGLSV P  D +F+SACDDGRVL++D R    + 
Sbjct: 168 GNDDQVIVHDLKTTDVLNFFRHEKPVYGLSVHPHNDNVFSSACDDGRVLIYDIRGSANSP 227

Query: 74  E----LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS---CESCM 126
           E    LA +  PFH+VMFNP+   ++ATAN+K+G++++D RKP + +++YGS    +SCM
Sbjct: 228 ESFFCLAQHKNPFHSVMFNPINPVMLATANAKEGVSMWDVRKPLKPVLRYGSEGPAQSCM 287

Query: 127 SIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS 186
           ++RFN+AGT LL +R+RLPPVLY   S++ + QFDH GYYNSCTMKSCCFAG+ DEY++S
Sbjct: 288 NVRFNEAGTTLLAIRKRLPPVLYAVNSATHLCQFDHPGYYNSCTMKSCCFAGSNDEYILS 347

Query: 187 GSDDFVLYMWRVPRDD 202
           GSDDF LYMW++P DD
Sbjct: 348 GSDDFNLYMWKIPDDD 363

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432107116|gb|ELK32539.1| Alpha-actinin-1 [Myotis davidii]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 38  GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 97

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 98  PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 157

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 158 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 217

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 218 DDFNLYMWRIPAD 230

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383847829|ref|XP_003699555.1| PREDICTED: DDB1- and CUL4-associated factor 5-like [Megachile rotundata]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 158/206 (76%), Gaps = 6/206 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR--SREE 71
           GNDD VI HD+ +GD ++F+LHE+PVYGLSV P  D +FASACDDGRVL+FD R  S  E
Sbjct: 114 GNDDQVIVHDLRTGDVVNFFLHEKPVYGLSVHPHNDNVFASACDDGRVLIFDIRGSSAME 173

Query: 72  ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              LA     FH+VMFNP+E R++ATAN+K+G++L+D RKP E +++YG   S +SCM++
Sbjct: 174 TFCLAQYKTAFHSVMFNPIEPRMLATANAKEGVSLWDIRKPLEPVLRYGNESSAQSCMNV 233

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
            FN AG +LL LRRRLPP+LY   SS+ + QFDH GYYNSCTMKSCCFAG  DEYV+SGS
Sbjct: 234 TFNAAGNRLLALRRRLPPILYAVDSSTHLCQFDHPGYYNSCTMKSCCFAGDNDEYVLSGS 293

Query: 189 DDFVLYMWRVPRDDI-YVSSDIYVCR 213
           DDF LYMW++P +D+ +V+S   V R
Sbjct: 294 DDFNLYMWKIPSEDVKWVNSAHMVLR 319

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327280348|ref|XP_003224914.1| PREDICTED: DDB1- and CUL4-associated factor 5-like, partial [Anolis carolinensis]

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 146/193 (75%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ V+ HD+ SG+ +D + HE  VYGLSV P  D +FAS+ DDGRVL++D R   +  
Sbjct: 64  GNDEQVLLHDVESGETLDVFAHEDAVYGLSVSPVNDNVFASSSDDGRVLIWDIRESSQGE 123

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 124 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 183

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 184 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 243

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 244 DDFNLYMWRIPPD 256

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|197100342|ref|NP_001125052.1| DDB1- and CUL4-associated factor 5 [Pongo abelii] gi|55726813|emb|CAH90166.1| hypothetical protein [Pongo abelii]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 38  GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 97

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 98  PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 157

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 158 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 217

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 218 DDFNLYMWRIPAD 230

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355778691|gb|EHH63727.1| hypothetical protein EGM_16752, partial [Macaca fascicularis]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 57  GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 116

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 117 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 176

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 177 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 236

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 237 DDFNLYMWRIPAD 249

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148234935|ref|NP_001090592.1| DDB1 and CUL4 associated factor 5 [Xenopus laevis] gi|120537380|gb|AAI29051.1| LOC100036835 protein [Xenopus laevis]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ SG+ +D + HE  VYGLSV P  D +FAS+ DDGRVL++D R   +  
Sbjct: 118 GNDEQVILHDVESGETMDVFAHEEAVYGLSVSPVNDNVFASSSDDGRVLIWDIRESTQGD 177

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              +   P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP   L++YG   S +S MS+
Sbjct: 178 PFCLAHYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPHSSLLRYGGNLSLQSAMSV 237

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  P+ QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 238 RFNSNGTQLLALRRRLPPVLYDIHSRLPIFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 297

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P +
Sbjct: 298 DDFNLYMWRIPTN 310

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403264510|ref|XP_003924521.1| PREDICTED: DDB1- and CUL4-associated factor 5 [Saimiri boliviensis boliviensis]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 300 DDFNLYMWRIPAD 312

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119601385|gb|EAW80979.1| WD repeat domain 22, isoform CRA_a [Homo sapiens]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 38  GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 97

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 98  PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 157

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 158 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 217

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 218 DDFNLYMWRIPAD 230

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344273521|ref|XP_003408570.1| PREDICTED: DDB1- and CUL4-associated factor 5 [Loxodonta africana]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 5/193 (2%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
           GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct: 52  GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 111

Query: 74  ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
              + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct: 112 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 171

Query: 129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           RFN  GTQLL LRRRLPPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct: 172 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 231

Query: 189 DDFVLYMWRVPRD 201
           DDF LYMWR+P D
Sbjct: 232 DDFNLYMWRIPAD 244

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
ZFIN|ZDB-GENE-060929-808	789	dcaf5 "ddb1 and cul4 associate	0.839	0.238	0.549	1.8e-55
UNIPROTKB|F1N0J7	876	DCAF5 "Uncharacterized protein	0.839	0.214	0.559	3.2e-55
UNIPROTKB|Q96JK2	942	DCAF5 "DDB1- and CUL4-associat	0.839	0.199	0.559	5.4e-55
UNIPROTKB|E2QXZ3	947	DCAF5 "Uncharacterized protein	0.839	0.198	0.559	5.6e-55
UNIPROTKB|G3V6K4	946	Dcaf5 "Protein Dcaf5" [Rattus	0.839	0.198	0.559	9.2e-55
MGI|MGI:2444785	946	Dcaf5 "DDB1 and CUL4 associate	0.839	0.198	0.554	1.2e-54
UNIPROTKB|F1NXD8	871	DCAF5 "Uncharacterized protein	0.839	0.215	0.564	4e-54
DICTYBASE|DDB_G0269686	895	DDB_G0269686 "WD40 repeat-cont	0.303	0.075	0.333	1.3e-06
TAIR|locus:2059856	415	MSI2 "AT2G16780" [Arabidopsis	0.343	0.185	0.324	2.5e-05
ASPGD|ASPL0000009210	447	AN4226 [Emericella nidulans (t	0.705	0.353	0.234	3.7e-05

ZFIN|ZDB-GENE-060929-808 dcaf5 "ddb1 and cul4 associated factor 5" [Danio rerio (taxid:7955)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 106/193 (54%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND+ VI HD+  G+ ++ +LH+  VYGLSV P  D +FAS+ DDGRVL++DTR      
Sbjct:   118 GNDEQVILHDVERGETLNVFLHDDAVYGLSVSPVNDNVFASSSDDGRVLIWDTREPPHGE 177

Query:    74 ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct:   178 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPRSSLLRYGGSLSLQSAMSV 237

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY   S  P  QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   238 RFNSTGTQLLALRRRLPPVLYELHSRLPSFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 297

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMWR+P D
Sbjct:   298 DDFNLYMWRIPTD 310

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1N0J7 DCAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 574 (207.1 bits), Expect = 3.2e-55, P = 3.2e-55
 Identities = 108/193 (55%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct:    49 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 108

Query:    74 ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct:   109 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 168

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   169 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 228

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMWR+P D
Sbjct:   229 DDFNLYMWRIPAD 241

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q96JK2 DCAF5 "DDB1- and CUL4-associated factor 5" [Homo sapiens (taxid:9606)]

 Score = 574 (207.1 bits), Expect = 5.4e-55, P = 5.4e-55
 Identities = 108/193 (55%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct:   120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query:    74 ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct:   180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMWR+P D
Sbjct:   300 DDFNLYMWRIPAD 312

GO:0005739 "mitochondrion" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

UNIPROTKB|E2QXZ3 DCAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 574 (207.1 bits), Expect = 5.6e-55, P = 5.6e-55
 Identities = 108/193 (55%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct:   120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query:    74 ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct:   180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMWR+P D
Sbjct:   300 DDFNLYMWRIPAD 312

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|G3V6K4 Dcaf5 "Protein Dcaf5" [Rattus norvegicus (taxid:10116)]

 Score = 572 (206.4 bits), Expect = 9.2e-55, P = 9.2e-55
 Identities = 108/193 (55%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct:   120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query:    74 ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct:   180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMW+VP D
Sbjct:   300 DDFNLYMWKVPAD 312

GO:0005739 "mitochondrion" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

MGI|MGI:2444785 Dcaf5 "DDB1 and CUL4 associated factor 5" [Mus musculus (taxid:10090)]

 Score = 571 (206.1 bits), Expect = 1.2e-54, P = 1.2e-54
 Identities = 107/193 (55%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R      
Sbjct:   120 GNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGE 179

Query:    74 ELAVNSGP--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                + + P  FH+VMFNPVE RL+ATANSK+G+ L+D RKP+  L++YG   S +S MS+
Sbjct:   180 PFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSV 239

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY+  S  PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   240 RFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 299

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMW++P D
Sbjct:   300 DDFNLYMWKIPAD 312

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|F1NXD8 DCAF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 564 (203.6 bits), Expect = 4.0e-54, P = 4.0e-54
 Identities = 109/193 (56%), Positives = 137/193 (70%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR--SREE 71
             GND+ VI HD+ S + +D + HE  VYGLSV P  D IFAS+ DDGRVL++D R  S  E
Sbjct:    49 GNDEQVILHDVESTETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESSHGE 108

Query:    72 ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSI 128
                LA     FH+VMFNPVE RL+ATANSK+G+ L+D R+P+  L++YG   S +S MS+
Sbjct:   109 PFCLAHYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRRPQSSLLRYGGNLSLQSAMSV 168

Query:   129 RFNKAGTQXXXXXXXXPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             RFN  GTQ        PPVLY+     PV QFD++GY+NSCTMKSCCFAG +D+Y++SGS
Sbjct:   169 RFNSNGTQLLALRRRLPPVLYDIHCRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGS 228

Query:   189 DDFVLYMWRVPRD 201
             DDF LYMWR+P D
Sbjct:   229 DDFNLYMWRIPPD 241

GO:0005739 "mitochondrion" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

DICTYBASE|DDB_G0269686 DDB_G0269686 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 96 (38.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query:    14 GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT 73
             GND  +  +D+ +     +  H + V  LSV P+Q  +F S+  DG V LFD R + + T
Sbjct:   109 GNDADIRYYDIENQKCTVYKHHSKKVLKLSVCPTQPQVFLSSSSDGSVRLFDVRLKYKDT 168

Query:    74 ELA-VNSGP 81
             E+  + + P
Sbjct:   169 EIQPIQTAP 177

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2059856 MSI2 "AT2G16780" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 25/77 (32%), Positives = 46/77 (59%)

Query:    35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
             HE  +  +S     + +F SA +DGR++++DTR+ +   ++ V+    + + FNP    +
Sbjct:   216 HESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWV 275

Query:    95 VATANSKDGIALYDTRK 111
             +ATA+S   +AL+D RK
Sbjct:   276 LATASSDSTVALFDLRK 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ASPGD|ASPL0000009210 AN4226 [Emericella nidulans (taxid:162425)]

 Score = 122 (48.0 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 39/166 (23%), Positives = 75/166 (45%)

Query:    39 VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATA 98
             +  ++ + ++ ++ AS   D  ++L+D R+    ++L +     +AV +NP+EA   A A
Sbjct:   200 ITSVAFNQTETSVLASTGIDRSIILYDLRTSSPLSKLVLKLAS-NAVSWNPMEAFNFAVA 258

Query:    99 NSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQXXXXXXXXPPVLYNTRSSSPV 157
             N    + ++D RK    L +      + M + F+  G +           L+N R++   
Sbjct:   259 NEDHNVYMFDMRKMNRALNVLKDHVAAVMDVDFSPTGEELVTASYDRTIRLWN-RATG-- 315

Query:   158 AQFDHEGYYNSCTMKSCCFAGTQD-EYVVSGSDDFVLYMWRVPRDD 202
                  + Y+     +      T D +YV+SGSDD  + +WR    D
Sbjct:   316 --HSRDIYHTQRMQRVFSAKFTPDNKYVLSGSDDGNIRLWRANASD 359

GO:0030686 "90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80T85	DCAF5_MOUSE	No assigned EC number	0.5906	0.8392	0.1987	yes	N/A
Q96JK2	DCAF5_HUMAN	No assigned EC number	0.5958	0.8392	0.1995	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 32  FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVE 91
              H   V  ++  P    + A+   DG + ++D  + E    L  ++GP   V  +   
Sbjct: 5   LKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 92  ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT 151
             L + ++ K  I L+D    + V    G      S+ F+  G  L    R     +++ 
Sbjct: 64  TYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 152 RSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
            +   +     H  + N     S  F+     +V S S D  + +W +
Sbjct: 123 ETGKCLTTLRGHTDWVN-----SVAFSPDGT-FVASSSQDGTIKLWDL 164

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 10/181 (5%)

Query: 19  VISHDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV 77
           +   D+ +G  +     H   V  ++  P    + AS+  DG + L+D R+ +    L  
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 78  NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL 137
           ++G  ++V F+P   +L+++++    I L+D    K +    G      S+ F+  G  L
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 138 LGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMW 196
                     +++ R+   V      G+ NS T      A + D   + SGS D  + +W
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTL--SGHTNSVT----SLAWSPDGKRLASGSADGTIRIW 288

Query: 197 R 197
            
Sbjct: 289 D 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 14/144 (9%)

Query: 5   DPIKVLRVIGNDDHVIS---------HDMASGDPI-DFYLHERPVYGLSVDPSQDAIFAS 54
           D +  +    +   V S          D+ +G  +     H   V  ++  P  +    S
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK-LLS 194

Query: 55  ACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPK 113
           +  DG + L+D  + +    L  +    ++V F+P     +  + S+DG I ++D R  +
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGE 252

Query: 114 EVLMQYGSCESCMSIRFNKAGTQL 137
            V    G   S  S+ ++  G +L
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRL 276

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 11/212 (5%)

Query: 13  IGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-REE 71
             +D  +   D+++G  +   L       +S      ++ AS   DG + L+D RS    
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276

Query: 72  ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV--LMQYGSCESCMSIR 129
              L+ +S    +V F+P    L A+ +S   + L+D    K +  L   G      S+ 
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLL-ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 130 FNKAGTQLL-GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
           F+  G+ L+ G        L++ R+  P+   +      S +             V SGS
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR------VVSSGS 389

Query: 189 DDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVS 220
            D  + +W +    +  + D +  R  SL+ S
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 32  FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV--NSGPFHAVMFNP 89
              H   V  ++  P    + AS   DG V L+D  + +  + L +  + GP  ++ F+P
Sbjct: 280 LSGHSSSVLSVAFSPD-GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 90  VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY 149
             + LV+  +    I L+D R  K +    G   + +S+ F+  G  +          L+
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Query: 150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD 208
           +  + S +   D           S  F+      + SGS D  + +W +      VS  
Sbjct: 398 DLSTGSLLRNLDGHTSRV----TSLDFSPDGK-SLASGSSDNTIRLWDLKTSLKSVSFS 451

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 16/190 (8%)

Query: 14  GNDDHVISHDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
            +D  +   D+ +G+ +     H   V  ++  P    I +S+  D  + ++D  + +  
Sbjct: 70  SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL 128

Query: 73  TELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFN 131
           T L  ++   ++V F+P     VA++ S+DG I L+D R  K V    G      S+ F+
Sbjct: 129 TTLRGHTDWVNSVAFSPDG-TFVASS-SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 132 KAGTQLL--GLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGS 188
             G +LL       +   L++  +   +     HE   NS       F+      + SGS
Sbjct: 187 PDGEKLLSSSSDGTIK--LWDLSTGKCLGTLRGHENGVNSV-----AFSPDGY-LLASGS 238

Query: 189 DDFVLYMWRV 198
           +D  + +W +
Sbjct: 239 EDGTIRVWDL 248

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 4/180 (2%)

Query: 31  DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPV 90
               H   V  L+  P    + + +  DG + L+D R+ +  + LA ++ P  ++ F+P 
Sbjct: 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209

Query: 91  EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYN 150
              L+A+ +S   I L+D    K +          +   F+  G+ L          L++
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD 269

Query: 151 TRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIY 210
            RSSS           +S ++ S  F+    + + SGS D  + +W +    +  S  + 
Sbjct: 270 LRSSS---SLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 14  GNDDHVISHDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
            +D  +   D+++G  +     HE  V  ++  P    + AS  +DG + ++D R+ E  
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECV 254

Query: 73  TELAVNSGPFHAVMFNPVEARLVATANSKDGIA 105
             L+ ++    ++ ++P   RL +   S DG  
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASG--SADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 8   KVLRVIGNDDHVISHDMASGDPI---DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLF 64
           K+L    +D  V   D+ +G  +       HE PV  LS  P    + +   DDG + L+
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 65  DTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES 124
           D R+ +    L        +V F+P   R+V++ ++   + L+D      +    G    
Sbjct: 357 DLRTGKPLKTL-EGHSNVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414

Query: 125 CMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYN 167
             S+ F+  G  L          L++ ++S     F  +G   
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0263|consensus	707		100.0
KOG0271|consensus	480		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0286|consensus	343		100.0
KOG0263|consensus	707		100.0
KOG0286|consensus	343		100.0
KOG0315|consensus	311		100.0
KOG0285|consensus	460		100.0
KOG0266|consensus	456		100.0
KOG0273|consensus	524		100.0
KOG0271|consensus	480		100.0
KOG0266|consensus	456		100.0
KOG0284|consensus	464		100.0
KOG0316|consensus	307		100.0
KOG0295|consensus	406		100.0
KOG0277|consensus	311		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0284|consensus	464		100.0
KOG0295|consensus	406		100.0
KOG0319|consensus	775		100.0
KOG0273|consensus	524		100.0
KOG0276|consensus	794		100.0
KOG0285|consensus	460		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0315|consensus	311		100.0
KOG0291|consensus	893		100.0
KOG0265|consensus	338		100.0
KOG0282|consensus	503		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0291|consensus	893		100.0
KOG0645|consensus	312		100.0
KOG0275|consensus	508		100.0
KOG0281|consensus	499		100.0
KOG0319|consensus	775		100.0
KOG0281|consensus	499		100.0
KOG0265|consensus	338		100.0
KOG0310|consensus	487		99.98
KOG0282|consensus	503		99.98
KOG0277|consensus	311		99.98
KOG0264|consensus	422		99.98
PTZ00421	493	coronin; Provisional	99.97
KOG1407|consensus	313		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0640|consensus	430		99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0269|consensus	839		99.97
KOG0283|consensus	712		99.97
KOG0292|consensus	1202		99.97
KOG0274|consensus	537		99.97
KOG0645|consensus	312		99.97
KOG0288|consensus	459		99.97
KOG0276|consensus	794		99.97
KOG0293|consensus	519		99.97
KOG1446|consensus	311		99.97
KOG0313|consensus	423		99.96
KOG0274|consensus	537		99.96
KOG0313|consensus	423		99.96
KOG0283|consensus	712		99.96
KOG0264|consensus	422		99.96
KOG0643|consensus	327		99.96
KOG0316|consensus	307		99.96
KOG0292|consensus	1202		99.96
KOG0294|consensus	362		99.96
KOG0296|consensus	399		99.96
KOG0643|consensus	327		99.96
KOG0275|consensus	508		99.96
KOG0289|consensus	506		99.96
KOG0278|consensus	334		99.96
KOG0310|consensus	487		99.96
KOG0306|consensus	888		99.96
KOG0267|consensus	825		99.96
KOG0318|consensus	603		99.96
KOG0270|consensus	463		99.95
KOG0772|consensus	641		99.95
KOG0299|consensus	479		99.95
KOG0318|consensus	603		99.95
KOG0300|consensus	481		99.95
KOG0308|consensus	735		99.95
KOG0646|consensus	476		99.95
KOG0308|consensus	735		99.95
KOG1332|consensus	299		99.95
KOG0289|consensus	506		99.95
KOG0268|consensus	433		99.95
KOG0302|consensus	440		99.95
KOG0270|consensus	463		99.95
KOG0647|consensus	347		99.95
KOG1407|consensus	313		99.95
KOG0772|consensus	641		99.95
KOG0305|consensus	484		99.95
KOG0973|consensus	942		99.95
KOG0305|consensus	484		99.95
KOG1273|consensus	405		99.94
KOG0293|consensus	519		99.94
KOG1036|consensus	323		99.94
KOG0296|consensus	399		99.94
KOG0299|consensus	479		99.94
KOG0278|consensus	334		99.94
KOG0269|consensus	839		99.94
KOG0306|consensus	888		99.94
KOG0640|consensus	430		99.93
KOG0641|consensus	350		99.93
KOG0973|consensus	942		99.93
KOG4283|consensus	397		99.93
KOG1274|consensus	933		99.93
KOG0647|consensus	347		99.93
KOG0288|consensus	459		99.93
KOG0300|consensus	481		99.93
KOG0301|consensus	745		99.92
KOG0267|consensus	825		99.92
KOG0321|consensus	720		99.92
KOG0639|consensus	705		99.92
KOG0302|consensus	440		99.92
KOG0301|consensus	745		99.92
KOG4328|consensus	498		99.92
KOG1408|consensus	1080		99.92
KOG4378|consensus	673		99.92
KOG0641|consensus	350		99.92
KOG0639|consensus	705		99.91
KOG1332|consensus	299		99.91
KOG0303|consensus	472		99.91
KOG0307|consensus	1049		99.91
KOG1539|consensus	910		99.91
KOG1446|consensus	311		99.91
KOG1034|consensus	385		99.9
KOG0294|consensus	362		99.9
KOG4283|consensus	397		99.9
KOG1408|consensus	1080		99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG2919|consensus	406		99.9
KOG0303|consensus	472		99.9
KOG2048|consensus	691		99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0321|consensus	720		99.89
KOG2096|consensus	420		99.89
KOG2445|consensus	361		99.89
KOG1036|consensus	323		99.89
KOG0646|consensus	476		99.88
KOG2055|consensus	514		99.88
KOG0307|consensus	1049		99.88
KOG1274|consensus	933		99.88
KOG2096|consensus	420		99.87
KOG1188|consensus	376		99.87
KOG0290|consensus	364		99.87
KOG0642|consensus	577		99.86
KOG2055|consensus	514		99.86
KOG0771|consensus	398		99.86
KOG2048|consensus	691		99.86
KOG2110|consensus	391		99.86
KOG1539|consensus	910		99.85
KOG1273|consensus	405		99.85
KOG0649|consensus	325		99.85
KOG1445|consensus	1012		99.85
KOG1009|consensus	434		99.84
KOG1445|consensus	1012		99.84
KOG1034|consensus	385		99.84
KOG0650|consensus	733		99.84
KOG1007|consensus	370		99.84
KOG2106|consensus	626		99.84
KOG2106|consensus	626		99.84
KOG4378|consensus	673		99.83
KOG1063|consensus	764		99.83
KOG0290|consensus	364		99.83
KOG1188|consensus	376		99.83
KOG0268|consensus	433		99.82
KOG1063|consensus	764		99.81
KOG3881|consensus	412		99.81
KOG4328|consensus	498		99.81
KOG1272|consensus	545		99.8
KOG2110|consensus	391		99.8
KOG2445|consensus	361		99.8
KOG1009|consensus	434		99.8
KOG1007|consensus	370		99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG2394|consensus	636		99.79
KOG0644|consensus	1113		99.79
KOG1524|consensus	737		99.78
KOG2919|consensus	406		99.77
KOG0649|consensus	325		99.77
KOG1310|consensus	758		99.77
KOG4227|consensus	609		99.77
KOG1310|consensus	758		99.76
KOG0322|consensus	323		99.76
KOG1523|consensus	361		99.75
KOG0322|consensus	323		99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG2111|consensus	346		99.74
KOG0650|consensus	733		99.73
KOG1587|consensus	555		99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG1517|consensus	1387		99.73
KOG4227|consensus	609		99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1272|consensus	545		99.73
KOG1523|consensus	361		99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG0771|consensus	398		99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
KOG1517|consensus	1387		99.71
KOG1240|consensus	1431		99.71
KOG1334|consensus	559		99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG1587|consensus	555		99.69
KOG3881|consensus	412		99.69
KOG0642|consensus	577		99.68
KOG2139|consensus	445		99.68
KOG1538|consensus	1081		99.67
KOG2321|consensus	703		99.67
KOG1963|consensus	792		99.66
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
KOG1538|consensus	1081		99.65
KOG0974|consensus	967		99.65
KOG4547|consensus	541		99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG2321|consensus	703		99.64
KOG2394|consensus	636		99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG0644|consensus	1113		99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG2111|consensus	346		99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.59
KOG1524|consensus	737		99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.59
KOG0280|consensus	339		99.58
KOG1963|consensus	792		99.57
KOG1064|consensus	2439		99.56
KOG0280|consensus	339		99.55
KOG4497|consensus	447		99.53
KOG1354|consensus	433		99.53
KOG1240|consensus	1431		99.52
KOG0974|consensus	967		99.52
KOG4497|consensus	447		99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
KOG2139|consensus	445		99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.45
KOG4547|consensus	541		99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.45
PRK01029	428	tolB translocation protein TolB; Provisional	99.44
KOG3914|consensus	390		99.43
KOG2695|consensus	425		99.38
KOG3914|consensus	390		99.38
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.35
KOG1409|consensus	404		99.35
KOG2695|consensus	425		99.35
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG4714|consensus	319		99.34
KOG1334|consensus	559		99.34
KOG4190|consensus	1034		99.32
KOG1354|consensus	433		99.3
KOG4532|consensus	344		99.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
COG4946	668	Uncharacterized protein related to the periplasmic	99.22
KOG2315|consensus	566		99.22
KOG1409|consensus	404		99.21
KOG4532|consensus	344		99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG4190|consensus	1034		99.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.18
KOG2066|consensus	846		99.17
COG4946	668	Uncharacterized protein related to the periplasmic	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.16
KOG1064|consensus	2439		99.15
PRK04043	419	tolB translocation protein TolB; Provisional	99.14
KOG0309|consensus	1081		99.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.12
KOG2315|consensus	566		99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
KOG0309|consensus	1081		99.08
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.08
KOG4714|consensus	319		99.06
KOG1275|consensus	1118		99.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.05
KOG0882|consensus	558		99.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.04
KOG1645|consensus	463		99.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.97
KOG1275|consensus	1118		98.97
KOG2041|consensus	1189		98.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
KOG1832|consensus	1516		98.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.87
KOG1912|consensus	1062		98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.86
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.83
KOG2066|consensus	846		98.81
KOG0882|consensus	558		98.81
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.79
KOG2041|consensus	1189		98.78
KOG1008|consensus	783		98.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.77
KOG1912|consensus	1062		98.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.73
KOG2114|consensus	933		98.7
KOG4649|consensus	354		98.7
KOG3621|consensus	726		98.67
KOG2314|consensus	698		98.65
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.63
KOG1832|consensus	1516		98.62
KOG1920|consensus	1265		98.59
KOG2314|consensus	698		98.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.57
KOG1645|consensus	463		98.54
KOG3621|consensus	726		98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.45
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.41
COG3391	381	Uncharacterized conserved protein [Function unknow	98.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.34
KOG4640|consensus	665		98.33
KOG3617|consensus	1416		98.3
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.29
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.28
KOG4649|consensus	354		98.28
KOG1008|consensus	783		98.24
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
KOG2114|consensus	933		98.19
KOG4640|consensus	665		98.15
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.1
KOG3617|consensus	1416		98.06
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.04
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.04
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
KOG2079|consensus	1206		97.98
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.95
PHA02713	557	hypothetical protein; Provisional	97.94
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
KOG2395|consensus	644		97.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.9
COG3391	381	Uncharacterized conserved protein [Function unknow	97.89
KOG1920|consensus	1265		97.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.81
PRK02888	635	nitrous-oxide reductase; Validated	97.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.8
KOG4441|consensus	571		97.79
KOG4441|consensus	571		97.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.71
KOG2079|consensus	1206		97.69
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.62
PHA03098	534	kelch-like protein; Provisional	97.62
KOG2444|consensus	238		97.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.57
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.55
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.53
KOG2444|consensus	238		97.5
PRK13616	591	lipoprotein LpqB; Provisional	97.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.42
PRK13616	591	lipoprotein LpqB; Provisional	97.34
PHA02790	480	Kelch-like protein; Provisional	97.3
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.28
KOG3630|consensus	1405		97.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.19
KOG2395|consensus	644		97.11
PHA02713	557	hypothetical protein; Provisional	97.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.97
KOG1897|consensus	1096		96.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.93
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.84
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.81
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.8
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.79
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.79
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.63
KOG4499|consensus	310		96.58
PHA03098	534	kelch-like protein; Provisional	96.49
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.39
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.32
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.25
KOG2247|consensus	615		96.23
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.18
KOG3630|consensus	1405		96.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.04
COG5167	776	VID27 Protein involved in vacuole import and degra	95.94
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.85
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.81
KOG4460|consensus	741		95.73
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.72
KOG2377|consensus	657		95.71
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.7
PHA02790	480	Kelch-like protein; Provisional	95.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.57
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.54
COG5167	776	VID27 Protein involved in vacuole import and degra	95.53
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.51
KOG1900|consensus	1311		95.44
KOG4499|consensus	310		95.43
KOG1897|consensus	1096		95.42
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.34
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.3
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.18
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.17
KOG1916|consensus	1283		95.0
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.93
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.9
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.89
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.82
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.78
KOG2247|consensus	615		94.74
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.67
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.65
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.15
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.06
PLN02153	341	epithiospecifier protein	94.06
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	94.04
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.9
KOG2377|consensus	657		93.84
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.72
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.69
PRK13684	334	Ycf48-like protein; Provisional	93.58
PRK10115	686	protease 2; Provisional	93.55
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.47
PLN02193	470	nitrile-specifier protein	93.38
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.3
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.17
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.96
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.67
KOG1900|consensus	1311		92.46
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.15
KOG1916|consensus	1283		92.06
COG5276	370	Uncharacterized conserved protein [Function unknow	91.95
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.93
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.78
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.77
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.66
KOG1898|consensus	1205		91.56
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.4
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.24
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.12
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.85
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.63
PRK13684	334	Ycf48-like protein; Provisional	89.97
KOG1983|consensus	993		89.56
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.32
KOG1896|consensus	1366		89.24
COG4590	733	ABC-type uncharacterized transport system, permeas	89.2
COG5276	370	Uncharacterized conserved protein [Function unknow	88.51
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	88.51
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.39
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.38
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.37
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.31
KOG4460|consensus	741		88.18
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	87.62
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.47
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.14
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.13
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.84
PLN02193	470	nitrile-specifier protein	86.64
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.55
KOG3616|consensus	1636		86.34
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	86.2
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	86.19
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.77
KOG1898|consensus	1205		85.61
KOG2280|consensus	829		84.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.19
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.43
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.17
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.6
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.17
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.1

>KOG0272|consensus

Probab=100.00  E-value=1.9e-41  Score=246.33  Aligned_cols=203  Identities=17%  Similarity=0.211  Sum_probs=186.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +..+|+|+.||++++|++.+..++..+ +|...|..++|+|+| ++|+|++.|.+-++||++++..+...++|...|.++
T Consensus       231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhccccccccee
Confidence            458999999999999999998888777 899999999999999 899999999999999999999888889999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEG  164 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~  164 (224)
                      +|+| ++.++++|+.|..-+|||+|++.++..+.+|..+|.+|+|+|+|-.|++|+.|++++|||++..+++..+ .|..
T Consensus       310 af~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n  388 (459)
T KOG0272|consen  310 AFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN  388 (459)
T ss_pred             EecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence            9999 9999999999999999999999999999999999999999999999999999999999999998888888 5777


Q ss_pred             cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEe-eCCceeEEE
Q psy11351        165 YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVC-RHGSLEVSI  221 (224)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~  221 (224)
                      -|+.     ++|+|..|.+|+|++.|++++||...+.++.     ..| ||..-.+++
T Consensus       389 lVS~-----Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-----ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  389 LVSQ-----VKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-----KSLAGHEGKVISL  436 (459)
T ss_pred             hhhh-----eEecccCCeEEEEcccCcceeeecCCCcccc-----hhhcCCccceEEE
Confidence            6665     6777767899999999999999999999887     666 888766553

>KOG0272|consensus

Probab=100.00  E-value=6.4e-41  Score=243.57  Aligned_cols=195  Identities=19%  Similarity=0.208  Sum_probs=181.4

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCC-CCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPS-QDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ++.+++.|+||+.+|.+++|+..+...+.++ +|...+.++.|+|. ....+++|+.||++++|++.+..++..+.+|..
T Consensus       183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~  262 (459)
T KOG0272|consen  183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA  262 (459)
T ss_pred             eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence            4577889999999999999999998877777 99999999999998 347999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|..++|+| ++++|+|++.|.+-++||+++...+....+|...|.+++|.|||..+++|+.|..-+|||+++++++..+
T Consensus       263 RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L  341 (459)
T KOG0272|consen  263 RVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL  341 (459)
T ss_pred             hheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       +|...|..     +.|+| +|..|+||+.|++++|||++..+..
T Consensus       342 ~gH~k~I~~-----V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  342 AGHIKEILS-----VAFSP-NGYHLATGSSDNTCKVWDLRMRSEL  380 (459)
T ss_pred             cccccceee-----EeECC-CceEEeecCCCCcEEEeeecccccc
Confidence             68787766     55556 8999999999999999999988773

>KOG0263|consensus

Probab=100.00  E-value=7e-40  Score=253.94  Aligned_cols=193  Identities=20%  Similarity=0.265  Sum_probs=181.3

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      +.+..++|+++|+|+++|+|.+.+..++..+ +|..+|.++.|+|.| .+||||+.|++.++|.....++.+.+.+|-+.
T Consensus       459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccc
Confidence            4566789999999999999999999998888 999999999999999 89999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      +.|+.|+| +..++++||.|.+|++||+.++..+..+.+|.++|.+++|||+|++|++|+.|+.|.+||+.+++++..+ 
T Consensus       538 V~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~  616 (707)
T KOG0263|consen  538 VDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK  616 (707)
T ss_pred             cceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence            99999999 9999999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +|.+.+.++.|+.      ++..|++|+.|.+|++||+.....
T Consensus       617 ~Ht~ti~SlsFS~------dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  617 GHTGTIYSLSFSR------DGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             cccCceeEEEEec------CCCEEEecCCCCeEEEEEchhhcc
Confidence            7888888766655      899999999999999999876433

>KOG0271|consensus

Probab=100.00  E-value=2.3e-39  Score=233.34  Aligned_cols=205  Identities=19%  Similarity=0.240  Sum_probs=174.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc-eeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA-TELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~   79 (224)
                      +++..++.|++|+.|.++|+||+.+..+..+. +|...|.|++|+||| +.|++|+.||+|++||.++++++ ..+.+|.
T Consensus       122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~  200 (480)
T KOG0271|consen  122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHK  200 (480)
T ss_pred             EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcc
Confidence            35678899999999999999999999998888 999999999999999 89999999999999999998764 6789999


Q ss_pred             cCeEEEEEcCC----CCCeEEEecCCCcEEEEecCCCceeeE--------------------------------------
Q psy11351         80 GPFHAVMFNPV----EARLVATANSKDGIALYDTRKPKEVLM--------------------------------------  117 (224)
Q Consensus        80 ~~i~~~~~~~~----~~~~l~~~~~dg~v~i~d~~~~~~~~~--------------------------------------  117 (224)
                      ..|++++|.|-    ..++|++++.||.++|||+..+.++..                                      
T Consensus       201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~  280 (480)
T KOG0271|consen  201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKL  280 (480)
T ss_pred             cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhH
Confidence            99999999873    356888888888888888765333222                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy11351        118 --------------------------------------------------------------------------------  117 (224)
Q Consensus       118 --------------------------------------------------------------------------------  117 (224)
                                                                                                      
T Consensus       281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi  360 (480)
T KOG0271|consen  281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI  360 (480)
T ss_pred             HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence                                                                                            


Q ss_pred             --eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEE
Q psy11351        118 --QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY  194 (224)
Q Consensus       118 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~  194 (224)
                        ..+|..-|..+.||||++++++++.|..|++||-++|+.+..| +|-+.++.++++.      |.++|++|+.|.+++
T Consensus       361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa------DsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA------DSRLLVSGSKDSTLK  434 (480)
T ss_pred             hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc------CccEEEEcCCCceEE
Confidence              1135566789999999999999999999999999999999999 5878877755555      899999999999999


Q ss_pred             EEeCCCCCeEeeeeeeEe-eCCcee
Q psy11351        195 MWRVPRDDIYVSSDIYVC-RHGSLE  218 (224)
Q Consensus       195 iw~~~~~~~~~~~~~~~~-~~~~~~  218 (224)
                      +|++++.+..     .-| ||....
T Consensus       435 vw~V~tkKl~-----~DLpGh~DEV  454 (480)
T KOG0271|consen  435 VWDVRTKKLK-----QDLPGHADEV  454 (480)
T ss_pred             EEEeeeeeec-----ccCCCCCceE
Confidence            9999998876     445 565443

>KOG0279|consensus

Probab=100.00  E-value=4.8e-38  Score=217.89  Aligned_cols=194  Identities=12%  Similarity=0.191  Sum_probs=169.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc--C
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV--N   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~   78 (224)
                      +.+.+|++.++++.|+++|+||+.+++....+ +|...|.+++|+|++ ..+++|+.|++|++|++.... ..++..  +
T Consensus        70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~c-k~t~~~~~~  147 (315)
T KOG0279|consen   70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVC-KYTIHEDSH  147 (315)
T ss_pred             EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccE-EEEEecCCC
Confidence            45678999999999999999999999888877 999999999999998 899999999999999987554 334433  2


Q ss_pred             CcCeEEEEEcCCC-CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVE-ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      .+.|.|++|+|+. ..++++++.|+.|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.+
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence            7899999999943 789999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+.+...+++     ++|+| +...|+.+ .+..|+|||+.++...
T Consensus       228 ysl~a~~~v~s-----l~fsp-nrywL~~a-t~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  228 YSLEAFDIVNS-----LCFSP-NRYWLCAA-TATSIKIWDLESKAVV  267 (315)
T ss_pred             EeccCCCeEee-----EEecC-CceeEeec-cCCceEEEeccchhhh
Confidence            99988777665     77777 45555554 4566999999998774

>KOG0279|consensus

Probab=100.00  E-value=4.9e-36  Score=207.96  Aligned_cols=190  Identities=19%  Similarity=0.269  Sum_probs=169.0

Q ss_pred             cceEEEEEeCCCcEEEEeCCC-----CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          6 PIKVLRVIGNDDHVISHDMAS-----GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +-+.+++++.|.++.+|++..     |.+++.+ +|+..|..+..++++ ++.++++.|+++++||+.+++..+.|.+|.
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEEecC
Confidence            346899999999999999864     4556666 999999999999999 899999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCC--CCeEeeeecCCCcEEEECCCCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKA--GTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      ..|.+++|++ +.+.+++|+.|.++++|++... +...+..  +.+.|.|+.|+|+  ..++++++.|++|++||+++.+
T Consensus       106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             CceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence            9999999999 8999999999999999999866 4444443  3789999999998  6799999999999999999998


Q ss_pred             cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ....+ +|.+.++.+++     +| ||.+.++|+.||.+.+||++.++..
T Consensus       184 l~~~~~gh~~~v~t~~v-----Sp-DGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  184 LRTTFIGHSGYVNTVTV-----SP-DGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             hhhccccccccEEEEEE-----CC-CCCEEecCCCCceEEEEEccCCcee
Confidence            88888 78888777555     44 8999999999999999999999885

>KOG0286|consensus

Probab=100.00  E-value=4.6e-35  Score=204.45  Aligned_cols=206  Identities=16%  Similarity=0.206  Sum_probs=183.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC--c----eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG--D----PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~--~----~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      |..+.++++|.|+-|....||++.+.  +    ..+.+ +|++.+.|+.|.++  ..|++++.|.+..+||+++++.+..
T Consensus       104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             EECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEE
Confidence            56788999999999999999999855  2    23334 89999999999986  4899999999999999999999999


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      +.+|.+.|.++.++|.+++.+++|+.|+..++||+|.+.....|.+|+..|.+++|.|+|.-+++|+.|+++++||++..
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEe-eCCce
Q psy11351        155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVC-RHGSL  217 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~  217 (224)
                      +.+..+.+...+..  +.+++|+- .|++|.+|..|..+.+||.-.++..     .+| ||..-
T Consensus       262 ~~~a~ys~~~~~~g--itSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~v-----g~L~GHeNR  317 (343)
T KOG0286|consen  262 QELAVYSHDSIICG--ITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERV-----GVLAGHENR  317 (343)
T ss_pred             cEEeeeccCcccCC--ceeEEEcc-cccEEEeeecCCceeEeeccccceE-----EEeeccCCe
Confidence            99999865544332  34466666 7999999999999999999998886     666 77643

>KOG0263|consensus

Probab=100.00  E-value=1.8e-36  Score=235.09  Aligned_cols=204  Identities=20%  Similarity=0.278  Sum_probs=182.2

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCC--------------------------------ceeeEEeccCCeeEEEEcCCCCc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASG--------------------------------DPIDFYLHERPVYGLSVDPSQDA   50 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~   50 (224)
                      +++.++++|.|-.|..|++|.+...                                .....++|.++|+.+.|+|+. +
T Consensus       386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~-r  464 (707)
T KOG0263|consen  386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR-R  464 (707)
T ss_pred             ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc-c
Confidence            5677889999999999999998731                                112244899999999999998 8


Q ss_pred             EEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEE
Q psy11351         51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRF  130 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~  130 (224)
                      +|+++++|+++++|.+.+...+..+++|..+|.++.|+| .+.++|+++.|++.++|......++..+.+|.+.|.|+.|
T Consensus       465 fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~F  543 (707)
T KOG0263|consen  465 FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSF  543 (707)
T ss_pred             ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEE
Confidence            999999999999999999999999999999999999999 9999999999999999999988888888999999999999


Q ss_pred             cCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeee
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDI  209 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~  209 (224)
                      +|++.|+++|+.|.+|++||+.+|..++.| +|.+++.+     ++|+| +|.+|++|+.||.|.+||+.++++.     
T Consensus       544 HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a-----l~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v-----  612 (707)
T KOG0263|consen  544 HPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA-----LAFSP-CGRYLASGDEDGLIKIWDLANGSLV-----  612 (707)
T ss_pred             CCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE-----EEEcC-CCceEeecccCCcEEEEEcCCCcch-----
Confidence            999999999999999999999999999999 78888766     55666 7999999999999999999999876     


Q ss_pred             eEe-eCCceeE
Q psy11351        210 YVC-RHGSLEV  219 (224)
Q Consensus       210 ~~~-~~~~~~~  219 (224)
                      ..+ +|++...
T Consensus       613 ~~l~~Ht~ti~  623 (707)
T KOG0263|consen  613 KQLKGHTGTIY  623 (707)
T ss_pred             hhhhcccCcee
Confidence            344 5655443

>KOG0286|consensus

Probab=100.00  E-value=8.3e-36  Score=208.14  Aligned_cols=184  Identities=22%  Similarity=0.280  Sum_probs=169.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ...++|+|.|.+..+||+++++.+..+ +|.+.|.+++++|..++.+++|+-|+..++||+|.+.+.+.|.+|+..|+++
T Consensus       156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV  235 (343)
T ss_pred             CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence            457899999999999999999999988 9999999999999444999999999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      +|.| ++.-+++|+.|++.++||+|..+.+..+..  ...+|++++||..|++|++|..|.++.+||.-.++.+..+ +|
T Consensus       236 ~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH  314 (343)
T KOG0286|consen  236 RFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH  314 (343)
T ss_pred             EEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc
Confidence            9999 999999999999999999999877766653  4468999999999999999999999999999999988888 79


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      +.+|.++..++      +|.-+++|+.|..++||.
T Consensus       315 eNRvScl~~s~------DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  315 ENRVSCLGVSP------DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCeeEEEEECC------CCcEEEecchhHheeecC
Confidence            99988866665      899999999999999994

>KOG0315|consensus

Probab=100.00  E-value=2.5e-34  Score=196.82  Aligned_cols=194  Identities=17%  Similarity=0.223  Sum_probs=167.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-ccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~   81 (224)
                      +.-+|+.+++|++||+++|||+..-.+.+.+.|.++|+++..+|+. ..|++|..+|.|++||+....+.+.+ ......
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence            4567899999999999999999998888888999999999999998 79999999999999999988665554 344468


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCc------eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC-
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPK------EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-  154 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-  154 (224)
                      |.++...| ++..++.+...|.+++|++-..+      ++..+..|.+.+..+.+||++++|++++.|.+++||+.++. 
T Consensus       170 i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  170 IQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             eeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            99999999 99999999999999999987543      34455679999999999999999999999999999999887 


Q ss_pred             Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +....+ .|...+..     |+||. +++||+||+.|+.+++|++..++..
T Consensus       249 kle~~l~gh~rWvWd-----c~FS~-dg~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWD-----CAFSA-DGEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             eeEEEeecCCceEEe-----eeecc-CccEEEecCCCCceeecccccCcee
Confidence            333444 46666665     45555 8999999999999999999999876

>KOG0285|consensus

Probab=100.00  E-value=4.8e-35  Score=209.59  Aligned_cols=195  Identities=16%  Similarity=0.237  Sum_probs=178.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +|+++.++++++|+.|++++|||+.++++..++ +|-..|..+++++-. .++++++.|+.|+.||++..+.++.+.+|-
T Consensus       157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkvIR~YhGHl  235 (460)
T KOG0285|consen  157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKVIRHYHGHL  235 (460)
T ss_pred             EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhhHHHhcccc
Confidence            467778899999999999999999999999888 899999999999998 699999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      +.|.+++.+| .-..|++|+.|..+++||+|+...+..+.+|..+|.++.+.|....+++|+.|++|++||++.|+....
T Consensus       236 S~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t  314 (460)
T KOG0285|consen  236 SGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT  314 (460)
T ss_pred             ceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe
Confidence            9999999999 889999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 FD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +. |...+.+     ++.+| ....+++++.| .++-|++..|...
T Consensus       315 lt~hkksvra-----l~lhP-~e~~fASas~d-nik~w~~p~g~f~  353 (460)
T KOG0285|consen  315 LTHHKKSVRA-----LCLHP-KENLFASASPD-NIKQWKLPEGEFL  353 (460)
T ss_pred             eecccceeeE-----EecCC-chhhhhccCCc-cceeccCCccchh
Confidence            74 5555444     56666 68889998877 6899999998765

>KOG0266|consensus

Probab=100.00  E-value=3.4e-34  Score=224.46  Aligned_cols=198  Identities=22%  Similarity=0.341  Sum_probs=171.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeC-CCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDM-ASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ++..+++++++++.|++|+|||+ ..+..++.+ +|...|++++|+|++ +++++|+.|++|+|||+++++++..+.+|.
T Consensus       210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs  288 (456)
T KOG0266|consen  210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHS  288 (456)
T ss_pred             EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence            45678889999999999999999 555777777 999999999999999 999999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce--eeEeecCCC--ceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE--VLMQYGSCE--SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      +.|++++|++ ++.++++++.|+.|++||+.++..  ...+..+..  +++++.|+|++.++++++.|+.+++||++.++
T Consensus       289 ~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  289 DGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             CceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence            9999999999 999999999999999999999873  445555444  59999999999999999999999999999998


Q ss_pred             cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ....+ .|...+.  .+.....++ .+.++++|+.|+.|++|++.++...
T Consensus       368 ~~~~~~~~~~~~~--~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~~~~  414 (456)
T KOG0266|consen  368 SVGTYTGHSNLVR--CIFSPTLST-GGKLIYSGSEDGSVYVWDSSSGGIL  414 (456)
T ss_pred             ceeeecccCCcce--eEecccccC-CCCeEEEEeCCceEEEEeCCccchh
Confidence            88887 4554431  222333455 6899999999999999999987654

>KOG0273|consensus

Probab=100.00  E-value=1.1e-34  Score=213.83  Aligned_cols=194  Identities=17%  Similarity=0.293  Sum_probs=173.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----------   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------   70 (224)
                      +-++.|..||+|+.||.++||+... ..+..+ .|.++|.++.|+..| ++|++++.|+++.+||..++.          
T Consensus       242 ~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~  319 (524)
T KOG0273|consen  242 DWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSA  319 (524)
T ss_pred             EecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence            4578899999999999999999875 455555 899999999999999 899999999999999985543          


Q ss_pred             -------------------------------cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee
Q psy11351         71 -------------------------------EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY  119 (224)
Q Consensus        71 -------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  119 (224)
                                                     ++.++.+|.++|.++.|+| .+.+|++++.|++++||..........+.
T Consensus       320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~  398 (524)
T KOG0273|consen  320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQ  398 (524)
T ss_pred             CccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhh
Confidence                                           3346678999999999999 99999999999999999999888888899


Q ss_pred             cCCCceeEEEEcCCC---------CeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        120 GSCESCMSIRFNKAG---------TQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       120 ~~~~~v~~~~~~~~~---------~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      .|...|..+.|+|+|         ..+++++.|++|++||+..+.++..| +|..+|.+++     |+| ++.++++|+.
T Consensus       399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-----fS~-~g~ylAsGs~  472 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-----FSP-NGRYLASGSL  472 (524)
T ss_pred             hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-----ecC-CCcEEEecCC
Confidence            999999999999975         36899999999999999999999999 8999988755     455 8999999999


Q ss_pred             CCeEEEEeCCCCCeE
Q psy11351        190 DFVLYMWRVPRDDIY  204 (224)
Q Consensus       190 d~~v~iw~~~~~~~~  204 (224)
                      ||.|.+|++++++..
T Consensus       473 dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  473 DGCVHIWSTKTGKLV  487 (524)
T ss_pred             CCeeEeccccchhee
Confidence            999999999999886

>KOG0271|consensus

Probab=100.00  E-value=5.8e-35  Score=210.74  Aligned_cols=185  Identities=17%  Similarity=0.247  Sum_probs=164.0

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce---------
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT---------   73 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------   73 (224)
                      ..+.++||+++.||+|+|||+..+.++... +|+.+|+|+.|--+|  ++++|+.|++|++|+...|...+         
T Consensus       214 ~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwv  291 (480)
T KOG0271|consen  214 VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWV  291 (480)
T ss_pred             CCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence            355679999999999999999999988877 999999999998654  89999999999999876543211         


Q ss_pred             ----------------------------------------------------------------------eeccCCcCeE
Q psy11351         74 ----------------------------------------------------------------------ELAVNSGPFH   83 (224)
Q Consensus        74 ----------------------------------------------------------------------~~~~~~~~i~   83 (224)
                                                                                            .+.+|...|+
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn  371 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN  371 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence                                                                                  3446777899


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      .+.|+| +++++|+++.|..|++||-++++.+..+.+|-..|+.++|+.|.++|++|+.|.++++|++++.+....+ +|
T Consensus       372 ~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  372 HVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             eEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999998888 58


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      ...+..+     .|+| +|..+++|+.|..+++|.
T Consensus       451 ~DEVf~v-----Dwsp-DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  451 ADEVFAV-----DWSP-DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceEEEE-----EecC-CCceeecCCCceEEEeec
Confidence            8888764     5555 899999999999999995

>KOG0266|consensus

Probab=100.00  E-value=7.9e-34  Score=222.37  Aligned_cols=197  Identities=17%  Similarity=0.241  Sum_probs=174.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec-CCcccceeecc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT-RSREEATELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~   77 (224)
                      .+.++|+.+++++.|+.+++|+..+.+  ..... +|...|++++|+|++ .++++++.|++|+|||+ ..+..++++++
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~g  244 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLKG  244 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEecC
Confidence            356789999999999999999997777  55554 899999999999999 79999999999999999 44578899999


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC--
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS--  155 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~--  155 (224)
                      |...|++++|+| .++++++|+.|+.|++||+++++....+..|.+.|++++|++++++|++++.|+.|++||+.++.  
T Consensus       245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            999999999999 66999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +...+ .+....   .+..++|+| ++.++++++.|+.+++||+..+...
T Consensus       324 ~~~~~~~~~~~~---~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  324 CLKLLSGAENSA---PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             eeecccCCCCCC---ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcce
Confidence            44555 233221   345588888 7999999999999999999988765

>KOG0284|consensus

Probab=100.00  E-value=1.2e-35  Score=215.51  Aligned_cols=195  Identities=16%  Similarity=0.241  Sum_probs=176.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ....++.++++|+.+|.|++|+.+........ .|...|++++|+|.+ ..|+++++||+|+|||....+....+.+|.-
T Consensus       145 ~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgw  223 (464)
T KOG0284|consen  145 KWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGW  223 (464)
T ss_pred             EEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCC
Confidence            45678899999999999999999876655555 456999999999987 8999999999999999999998889999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .+.+++|+| ...++++++.|..|++||.+++.++..+..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+
T Consensus       224 dVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  224 DVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY  302 (464)
T ss_pred             CcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence            999999999 8899999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       .|...+.+     +.|+|....+|.+|+.||.|..|.+...++
T Consensus       303 r~Hkkdv~~-----~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p  341 (464)
T KOG0284|consen  303 RGHKKDVTS-----LTWHPLNESLFTSGGSDGSVVHWVVGLEEP  341 (464)
T ss_pred             hcchhhhee-----eccccccccceeeccCCCceEEEecccccc
Confidence             58888776     566676899999999999999999984443

>KOG0316|consensus

Probab=100.00  E-value=4.8e-34  Score=194.11  Aligned_cols=196  Identities=20%  Similarity=0.282  Sum_probs=170.8

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      .+.+|+|.++++.|.+|++||...+.+++++ +|..+|.+++.+.++ ..|++|+.|+.+.+||+++|+..+.+.+|...
T Consensus        25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq  103 (307)
T KOG0316|consen   25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ  103 (307)
T ss_pred             EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCeeeeecccccce
Confidence            3668999999999999999999999999999 999999999999998 79999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCc--eeeEe-----------------------------e---------cC
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPK--EVLMQ-----------------------------Y---------GS  121 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~--~~~~~-----------------------------~---------~~  121 (224)
                      |+.++|+. +...+++|+.|.++++||.|+..  +++.+                             .         --
T Consensus       104 VNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~  182 (307)
T KOG0316|consen  104 VNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF  182 (307)
T ss_pred             eeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc
Confidence            99999999 89999999999999999998632  11110                             0         03


Q ss_pred             CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        122 CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ..+|++++|+++++..++++.|+++++.|-++|+.+..+ +|...-.   -..|+++. ....+++|++||.|++||+..
T Consensus       183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey---kldc~l~q-sdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY---KLDCCLNQ-SDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccccee---eeeeeecc-cceeEEeccCCceEEEEEecc
Confidence            468999999999999999999999999999999999988 4544333   23477776 578899999999999999999


Q ss_pred             CCeE
Q psy11351        201 DDIY  204 (224)
Q Consensus       201 ~~~~  204 (224)
                      +.+.
T Consensus       259 ~~~~  262 (307)
T KOG0316|consen  259 ETQI  262 (307)
T ss_pred             ceee
Confidence            8775

>KOG0295|consensus

Probab=100.00  E-value=3.9e-34  Score=204.98  Aligned_cols=196  Identities=13%  Similarity=0.136  Sum_probs=179.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCC-CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMAS-GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      ++++..|+++++++.|-.+++||.++ .++++.. +|+..|.++.|-|.| .++++++.|.+|+.|++.++-++.++.+|
T Consensus       156 i~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  156 ISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             EEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCc
Confidence            35678899999999999999999987 4555555 999999999999999 89999999999999999999999999999


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC----------C-----CeEeeeecC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA----------G-----TQLLGLRRR  143 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d  143 (224)
                      ...+..++.+. ++.++++++.|.++++|-+.+.++...+..|+.+|.+++|-|.          +     +++.+++.|
T Consensus       235 ~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  235 SEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             hHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            99999999999 9999999999999999999999888888899999999999864          2     489999999


Q ss_pred             CCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++|++||+.++.++.++ +|...|..++|++      .|+||+++..|+++++||++++++.
T Consensus       314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p------~Gkyi~ScaDDktlrvwdl~~~~cm  369 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP------GGKYILSCADDKTLRVWDLKNLQCM  369 (406)
T ss_pred             ceEEEEeccCCeEEEEEecccceeeeeEEcC------CCeEEEEEecCCcEEEEEeccceee
Confidence            99999999999999999 7888888755554      8999999999999999999999886

>KOG0277|consensus

Probab=100.00  E-value=2.2e-33  Score=192.62  Aligned_cols=194  Identities=18%  Similarity=0.287  Sum_probs=167.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCC-CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          5 DPIKVLRVIGNDDHVISHDMAS-GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      +..+.+++++.||+++|||+.. ..++..+ +|..+|.++.|++.....+++++.|++|++|+...++.+.++.+|...|
T Consensus        71 ~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I  150 (311)
T KOG0277|consen   71 NHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI  150 (311)
T ss_pred             CCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence            4456889999999999999653 3466666 8999999999999877788999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCC-cceec
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSS-PVAQF  160 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~-~~~~~  160 (224)
                      ....|+|..++++++++.|+.+++||++...+...+..|...+.++.|+.. .+.|++|+.|+.|++||+++.+ ++.++
T Consensus       151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence            999999999999999999999999999988777778889999999999985 5678899999999999998754 44444


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       .|.     .++.++.|+|....+|++++.|-+++|||...+.-
T Consensus       231 ~gh~-----~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  231 NGHG-----LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             cCCc-----eEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence             333     44666888887788999999999999999986544

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1e-31  Score=210.39  Aligned_cols=194  Identities=16%  Similarity=0.207  Sum_probs=156.3

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCc-------eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGD-------PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      ++++|++|+.|++|++||+.++.       ++..+ +|...|.+++|+|++.++|++++.|++|+|||+++++....+..
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            56799999999999999997652       34444 89999999999998657999999999999999999998888999


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCc-eeEEEEcCCCCeEeeee----cCCCcEEEECC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES-CMSIRFNKAGTQLLGLR----RRLPPVLYNTR  152 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~d~~v~v~d~~  152 (224)
                      |...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++    .|+.|++||++
T Consensus       167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            999999999999 8999999999999999999999887777777664 45678999888777654    47899999998


Q ss_pred             CCCc-ceecccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCCCCeE
Q psy11351        153 SSSP-VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~~~~~  204 (224)
                      +... +........ .  ......|++ ++++|++++ .|+.|++||+.+++..
T Consensus       246 ~~~~p~~~~~~d~~-~--~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        246 KMASPYSTVDLDQS-S--ALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             CCCCceeEeccCCC-C--ceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            7543 332221111 1  122245666 677777776 5999999999998764

>KOG0284|consensus

Probab=100.00  E-value=3.2e-34  Score=208.17  Aligned_cols=191  Identities=15%  Similarity=0.170  Sum_probs=167.3

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC-cC
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-GP   81 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~   81 (224)
                      +..|+.|++|+..|.+.+|+..+-...... .|+.+|.++.|++++ .++++|+.+|.|++|+..-.. ++.++.|. ..
T Consensus       105 tPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~ea  182 (464)
T KOG0284|consen  105 TPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEA  182 (464)
T ss_pred             cCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhh-hHHhhHhhhhh
Confidence            567899999999999999998554433333 899999999999998 899999999999999987554 45555554 89


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      |.+++|+| +...|++++.||.|+|||.+..+....+.+|.-.|.+++|+|....+++++.|..|++||.+++.++.++ 
T Consensus       183 IRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh  261 (464)
T KOG0284|consen  183 IRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH  261 (464)
T ss_pred             hheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence            99999999 7889999999999999999998888888999999999999999999999999999999999999999998 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .|...|..     +.|+| ++++|+|+|.|..++++|+++.+.
T Consensus       262 ~HKntVl~-----~~f~~-n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  262 GHKNTVLA-----VKFNP-NGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             hccceEEE-----EEEcC-CCCeeEEccCCceEEEEehhHhHH
Confidence            67666555     56666 789999999999999999996554

>KOG0295|consensus

Probab=100.00  E-value=2.3e-32  Score=195.98  Aligned_cols=187  Identities=16%  Similarity=0.269  Sum_probs=172.5

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      +.|.++++++.|.+|+.|++.++.++.++ +|...|.-++.+.|| .++++++.|.++++|-+.++++...++.|+.+|.
T Consensus       203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE  281 (406)
T KOG0295|consen  203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVE  281 (406)
T ss_pred             ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence            34689999999999999999999999999 999999999999999 8999999999999999999999999999999999


Q ss_pred             EEEEcCC--------------CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         84 AVMFNPV--------------EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        84 ~~~~~~~--------------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      +++|.|.              .+.++.+++.|++|++||+.++.++..+.+|...|..++|+|.|+||+++..|+++++|
T Consensus       282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW  361 (406)
T ss_pred             EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence            9999873              23589999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        150 NTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       150 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      |+.++++...+ .|+.-++++.+..      +..+++||+-|..+++|..
T Consensus       362 dl~~~~cmk~~~ah~hfvt~lDfh~------~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  362 DLKNLQCMKTLEAHEHFVTSLDFHK------TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EeccceeeeccCCCcceeEEEecCC------CCceEEeccccceeeeeec
Confidence            99999999888 5777777655554      7789999999999999974

>KOG0319|consensus

Probab=100.00  E-value=1e-32  Score=213.04  Aligned_cols=194  Identities=14%  Similarity=0.192  Sum_probs=171.5

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCcee----eEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc-------
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPI----DFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-------   71 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------   71 (224)
                      ...|-+|++|+.|.++++|.++.+...    ... +|++.|.+++++..+..+|+++|.|+++++|++...+.       
T Consensus       374 ~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~  453 (775)
T KOG0319|consen  374 WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL  453 (775)
T ss_pred             cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence            356679999999999999988554332    222 89999999999988889999999999999999976321       


Q ss_pred             --ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         72 --ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        72 --~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                        ......|...|++++++| +..+++|||.|++.+||++........+.+|...++++.|+|..+.+++++.|.+|+||
T Consensus       454 ~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  454 TCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             hhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence              113357999999999999 88999999999999999999888888899999999999999999999999999999999


Q ss_pred             ECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        150 NTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       150 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+.+..++++| +|...|..+.|..      ++..|++++.||-+++|+++++++.
T Consensus       533 ~is~fSClkT~eGH~~aVlra~F~~------~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  533 SISTFSCLKTFEGHTSAVLRASFIR------NGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             EeccceeeeeecCccceeEeeeeee------CCcEEEeccCCCcEEEEeccchhhh
Confidence            99999999999 5888887766666      8999999999999999999999885

>KOG0273|consensus

Probab=100.00  E-value=2.2e-32  Score=201.77  Aligned_cols=189  Identities=17%  Similarity=0.260  Sum_probs=166.8

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCc-----------------------------------------eeeEE-eccCCeeE
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGD-----------------------------------------PIDFY-LHERPVYG   41 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------------------~~~~~-~~~~~v~~   41 (224)
                      +..|.++++++.|+++.+||..+++                                         ++.++ +|.++|.+
T Consensus       285 nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  285 NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA  364 (524)
T ss_pred             cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence            4567888888888888888875542                                         34444 79999999


Q ss_pred             EEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCC--------CCeEEEecCCCcEEEEecCCCc
Q psy11351         42 LSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVE--------ARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        42 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      +.|+|.+ .+|++++.|++++||.+......+.+.+|...|..+.|+|.+        +..+++++.|++|++||+..+.
T Consensus       365 lk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv  443 (524)
T KOG0273|consen  365 LKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV  443 (524)
T ss_pred             EEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence            9999999 899999999999999999999999999999999999999842        4678999999999999999999


Q ss_pred             eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeE
Q psy11351        114 EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVL  193 (224)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v  193 (224)
                      ++..+..|..+|++++|+|+|+++++|+.|+.|.+|+.++++.++.+...+.+..     ++|+- +++.|..+..|+.+
T Consensus       444 ~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ife-----l~Wn~-~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  444 PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFE-----LCWNA-AGDKLGACASDGSV  517 (524)
T ss_pred             eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEE-----EEEcC-CCCEEEEEecCCCc
Confidence            9999999999999999999999999999999999999999999999866665444     67776 68999999999999


Q ss_pred             EEEeCC
Q psy11351        194 YMWRVP  199 (224)
Q Consensus       194 ~iw~~~  199 (224)
                      ++.|++
T Consensus       518 cvldlr  523 (524)
T KOG0273|consen  518 CVLDLR  523 (524)
T ss_pred             eEEEec
Confidence            999875

>KOG0276|consensus

Probab=100.00  E-value=1.5e-32  Score=209.08  Aligned_cols=190  Identities=15%  Similarity=0.259  Sum_probs=173.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-ccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-EEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~   84 (224)
                      -+++++|+.|..||||+.++++.++.+ .|...|.+++.+|.. .++++++.|-+|++||.+.. .+.+++.+|+.-|++
T Consensus        67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence            368999999999999999999999999 899999999999998 69999999999999999765 578899999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCC--CeEeeeecCCCcEEEECCCCCcceec-c
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG--TQLLGLRRRLPPVLYNTRSSSPVAQF-D  161 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~v~d~~~~~~~~~~-~  161 (224)
                      ++|+|.+.+.+++++-|++|++|.+.+..+...+.+|...|.|+.|-+.|  .+|++|+.|.+++|||..+..+++++ +
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence            99999999999999999999999999998889999999999999998754  69999999999999999999999999 5


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |...++.     ++|+| .-..+++|++||+++||.-.+-++
T Consensus       226 Ht~Nvs~-----v~fhp-~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  226 HTNNVSF-----VFFHP-ELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             ccccceE-----EEecC-CCcEEEEecCCccEEEecCcceeh
Confidence            7666554     67777 688999999999999999877544

>KOG0285|consensus

Probab=100.00  E-value=1.4e-32  Score=197.08  Aligned_cols=193  Identities=20%  Similarity=0.300  Sum_probs=176.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      |+++.--|+.+++.|+.|+-||++..+.++.+ +|-+.|+|++.+|.- ..|++|+.|.++++||+++...+..+.+|..
T Consensus       200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~  278 (460)
T KOG0285|consen  200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTN  278 (460)
T ss_pred             eecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCC
Confidence            55666679999999999999999999999887 999999999999998 7999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      +|..+.+.| ....+++|+.|++|++||++.++....+..|+..+.+++.+|....+++++.|. ++.|++..+..+..+
T Consensus       279 ~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl  356 (460)
T KOG0285|consen  279 PVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL  356 (460)
T ss_pred             cceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc
Confidence            999999999 677899999999999999999999999999999999999999999999999887 999999999988887


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .|..-++.+...       .+.++++|+.+|.+.+||.++|-..
T Consensus       357 sgh~~iintl~~n-------sD~v~~~G~dng~~~fwdwksg~ny  394 (460)
T KOG0285|consen  357 SGHNAIINTLSVN-------SDGVLVSGGDNGSIMFWDWKSGHNY  394 (460)
T ss_pred             ccccceeeeeeec-------cCceEEEcCCceEEEEEecCcCccc
Confidence             677777776554       4678999999999999999998664

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=4.2e-31  Score=208.18  Aligned_cols=187  Identities=16%  Similarity=0.225  Sum_probs=153.7

Q ss_pred             EeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc--------cceeeccCCcCeE
Q psy11351         13 IGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--------EATELAVNSGPFH   83 (224)
Q Consensus        13 ~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~i~   83 (224)
                      |+.++.|++|+......+..+ +|.+.|.+++|+|+.+++|++|+.|++|++||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556788999998777666666 8999999999999744899999999999999997642        2345788999999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      +++|+|....++++++.|+.|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+ .|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            999999444566899999999999999887665554 5678999999999999999999999999999999988887 57


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCC----CeEEEEeCCCC
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDD----FVLYMWRVPRD  201 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~v~iw~~~~~  201 (224)
                      .+.+....+....|++ ++.+|++++.|    +.|++||+++.
T Consensus       209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCC
Confidence            7766555555556667 57788877666    47999999964

>KOG0315|consensus

Probab=100.00  E-value=2.2e-31  Score=182.43  Aligned_cols=188  Identities=15%  Similarity=0.206  Sum_probs=162.0

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEec-cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc--cceeeccCCcCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLH-ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--EATELAVNSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i   82 (224)
                      +--+|++++.|.+||+|...+|.+..++.| ++.|+.+...|++ ..|++++. ..|++||+++++  ++.++.+|...|
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence            346899999999999999999999999976 5689999999998 78888875 699999999876  588999999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec--
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF--  160 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~--  160 (224)
                      +++.|.. +++.+++|++||.++|||+|...+ .....+.++|+++..+|+...|+++..+|.|++||+.+......+  
T Consensus        87 taVgF~~-dgrWMyTgseDgt~kIWdlR~~~~-qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   87 TAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSC-QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             EEEEEee-cCeEEEecCCCceEEEEeccCccc-chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            9999999 999999999999999999998644 445567899999999999999999999999999999987665555  


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +....+.+     +...| ++.+++.+...|+.++|++-+.+.
T Consensus       165 e~~~~i~s-----l~v~~-dgsml~a~nnkG~cyvW~l~~~~~  201 (311)
T KOG0315|consen  165 EDDTSIQS-----LTVMP-DGSMLAAANNKGNCYVWRLLNHQT  201 (311)
T ss_pred             CCCcceee-----EEEcC-CCcEEEEecCCccEEEEEccCCCc
Confidence            23334444     44444 899999999999999999988654

>KOG0291|consensus

Probab=100.00  E-value=5.5e-32  Score=209.80  Aligned_cols=195  Identities=14%  Similarity=0.146  Sum_probs=171.5

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC-
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-   78 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-   78 (224)
                      |+.+++|+++|+|++||+|+|||..++-|..++ +|++.|+.+.|+..+ +.+++++-||+|+.||+...+..+++... 
T Consensus       356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCC
Confidence            467889999999999999999999999999999 999999999999998 89999999999999999999888888643 


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCc-EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC-Cc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-SP  156 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-~~  156 (224)
                      .-...|++..| .+.++.+|+.|.. |.+|++++++.+..+.+|+++|.+++|+|.+..|++++-|.+|++||+-.. ..
T Consensus       435 p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  435 PIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT  513 (893)
T ss_pred             ceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence            34678899999 8899999988765 999999999999999999999999999999999999999999999998543 44


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.++.+...+..     +.|.| +|..+++++.||.|.+||.+.+.+
T Consensus       514 vEtl~i~sdvl~-----vsfrP-dG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  514 VETLEIRSDVLA-----VSFRP-DGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             eeeEeeccceeE-----EEEcC-CCCeEEEEEecceEEEEEhhhcee
Confidence            555555555555     45555 899999999999999999987655

>KOG0265|consensus

Probab=100.00  E-value=8.7e-32  Score=188.64  Aligned_cols=198  Identities=20%  Similarity=0.270  Sum_probs=171.7

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      +.+++.+++++.|.+++.||.++|+.++.. +|..-|+.+.-+.-|+.++.+++.|+++++||+|+...++++.. +-++
T Consensus        99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyql  177 (338)
T KOG0265|consen   99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQL  177 (338)
T ss_pred             ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeE
Confidence            567889999999999999999999999877 89999999997777888999999999999999999998888754 5579


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC----Ccce
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS----SPVA  158 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~----~~~~  158 (224)
                      +++.|.. .+..+.+|+-|+.|++||++.......+.+|.+.|+.+..+|+|.++++-+.|.++++||++..    +++.
T Consensus       178 tAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  178 TAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             EEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE
Confidence            9999998 8899999999999999999999999999999999999999999999999999999999999754    3345


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+....+--......|.|+| ++..+.+|+.|+.+++||.......
T Consensus       257 if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~l  301 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRIL  301 (338)
T ss_pred             EeecchhhhhhhcceeeccC-CCCccccccccceEEEeecccccEE
Confidence            55211111222344589999 7999999999999999999887665

>KOG0282|consensus

Probab=100.00  E-value=1.5e-32  Score=203.09  Aligned_cols=196  Identities=19%  Similarity=0.227  Sum_probs=167.4

Q ss_pred             cceEEEEEeCCCcEEEEeCCC-CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMAS-GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      .+.+|++++.|+.|+||++-. +++++++ +|..+|.+++|+++| ..|++++.|+.+++||+++|+++..+.. ...++
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~  303 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPT  303 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEEEec-CCCce
Confidence            578999999999999999976 7888888 999999999999999 8999999999999999999999888865 45689


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc--
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD--  161 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~--  161 (224)
                      |+.|+|++.+.+++|+.|+.|+.||+|+++.+..+..|-+.|..+.|-++|+++++.+.|+++++|+.+.+-++..+.  
T Consensus       304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~  383 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP  383 (503)
T ss_pred             eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch
Confidence            999999666999999999999999999999888888899999999999999999999999999999876543332210  


Q ss_pred             --c----------------------------------------CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        162 --H----------------------------------------EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       162 --~----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                        |                                        .++...-.-..+.||| |+.+|++|+.||.+.+||.+
T Consensus       384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeech
Confidence              0                                        1111011123578999 79999999999999999999


Q ss_pred             CCCeE
Q psy11351        200 RDDIY  204 (224)
Q Consensus       200 ~~~~~  204 (224)
                      +-++.
T Consensus       463 t~kl~  467 (503)
T KOG0282|consen  463 TTKLV  467 (503)
T ss_pred             hhhhh
Confidence            87764

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.8e-30  Score=204.72  Aligned_cols=192  Identities=12%  Similarity=0.111  Sum_probs=153.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc--------eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD--------PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~--------~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      +++|++|+.||+|+|||+.++.        ++..+ +|...|.+++|+|++..++++++.|++|++||+++++....+. 
T Consensus        87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-  165 (568)
T PTZ00420         87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-  165 (568)
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-
Confidence            6799999999999999997642        22233 7999999999999985567899999999999999988766665 


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeE-----EEEcCCCCeEeeeecCC----CcEE
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMS-----IRFNKAGTQLLGLRRRL----PPVL  148 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~d~----~v~v  148 (224)
                      |...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|.+.+..     ..|++++.++++++.|+    .|++
T Consensus       166 ~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL  244 (568)
T PTZ00420        166 MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL  244 (568)
T ss_pred             cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence            567899999999 8999999999999999999999888888888775433     34568889999987764    6999


Q ss_pred             EECCC-CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        149 YNTRS-SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       149 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ||+++ ++++..+.+......  +.+ .|.++++.++++|+.|+.|++|++..+..
T Consensus       245 WDlr~~~~pl~~~~ld~~~~~--L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        245 WDLKNTTSALVTMSIDNASAP--LIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             EECCCCCCceEEEEecCCccc--eEE-eeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence            99985 566665544443332  122 33344688999999999999999987754

>KOG0291|consensus

Probab=100.00  E-value=2.8e-31  Score=205.89  Aligned_cols=214  Identities=14%  Similarity=0.189  Sum_probs=183.5

Q ss_pred             CCCCCcceEEEEEeCC-CcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          1 MASGDPIKVLRVIGND-DHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      |+.+..|.++|.|+.. |.+-||+.++...+... +|...+++++++||| +++++|++||.|+|||..++-+..++..|
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteH  391 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEH  391 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccC
Confidence            3556778999988754 89999999998877655 899999999999999 99999999999999999999999999999


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-CCCceeEEEEcCCCCeEeeeecCCC-cEEEECCCCCc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-SCESCMSIRFNKAGTQLLGLRRRLP-PVLYNTRSSSP  156 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~-v~v~d~~~~~~  156 (224)
                      ...++.+.|+. .++.+++.+-||+|+.||+.....-..+.. ..-...|++..|.|..+.+|+.|.. |.+|++.+|+.
T Consensus       392 ts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql  470 (893)
T KOG0291|consen  392 TSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL  470 (893)
T ss_pred             CCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence            99999999999 999999999999999999998877777764 3446688999999999999988754 99999999999


Q ss_pred             ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEeeCCceeEEEeeC
Q psy11351        157 VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILPA  224 (224)
Q Consensus       157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~p~  224 (224)
                      +..+ +|+++|.++     +|+| .++.|+++|.|.+|++||+-......+  .....|..+.+++.|.
T Consensus       471 lDiLsGHEgPVs~l-----~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vE--tl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  471 LDILSGHEGPVSGL-----SFSP-DGSLLASGSWDKTVRIWDIFSSSGTVE--TLEIRSDVLAVSFRPD  531 (893)
T ss_pred             eehhcCCCCcceee-----EEcc-ccCeEEeccccceEEEEEeeccCceee--eEeeccceeEEEEcCC
Confidence            9999 799998874     4555 799999999999999999977644312  2222577788888774

>KOG0645|consensus

Probab=100.00  E-value=3.5e-31  Score=183.29  Aligned_cols=186  Identities=18%  Similarity=0.228  Sum_probs=157.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCC---ceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc--ccceeeccCC
Q psy11351          7 IKVLRVIGNDDHVISHDMASG---DPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR--EEATELAVNS   79 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~   79 (224)
                      |..||+|+.|+.||+|+...+   .+...+  +|...|.+++|+|.| ++|++|+.|.++.||.-..+  +++.++++|+
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE  105 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFECVATLEGHE  105 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence            569999999999999999853   344444  799999999999999 89999999999999987654  4788899999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc---eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC---
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPK---EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS---  153 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~---  153 (224)
                      .+|.+++|++ ++++||++++|+.|-||.+....   +...+.+|...|..+.|+|....|++++.|++|++|+-..   
T Consensus       106 nEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd  184 (312)
T KOG0645|consen  106 NEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD  184 (312)
T ss_pred             cceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC
Confidence            9999999999 99999999999999999998543   4455668999999999999999999999999999998762   


Q ss_pred             CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        154 SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ..+.+++ +|...+.     .+.|.+ .|..|++++.|++++||...+
T Consensus       185 W~c~~tl~g~~~TVW-----~~~F~~-~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  185 WECVQTLDGHENTVW-----SLAFDN-IGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             eeEEEEecCccceEE-----EEEecC-CCceEEEecCCcceEeeeecc
Confidence            3456666 4555444     466666 689999999999999998543

>KOG0275|consensus

Probab=100.00  E-value=2e-32  Score=194.56  Aligned_cols=199  Identities=12%  Similarity=0.166  Sum_probs=174.1

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE---------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY---------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      ++++|++|++|+.||.|.+||..+|+..+-+         -+..+|.|+.|+.+. ..+++|+.||.|++|.+++|.+++
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~ClR  299 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQCLR  299 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecchHHH
Confidence            4678999999999999999999998765422         378999999999998 799999999999999999999999


Q ss_pred             eec-cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         74 ELA-VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        74 ~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      .+. .|...|+|+.|+. ++..+++++.|..+++.-+++++.+..+.+|.+.|+...|.++|.++++++.||+|++|+..
T Consensus       300 rFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K  378 (508)
T KOG0275|consen  300 RFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK  378 (508)
T ss_pred             HhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence            996 8999999999999 88899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcceecccC---Ccccc----------------------------------------eeeeEEEEeCCCCeEEEEcCC
Q psy11351        153 SSSPVAQFDHE---GYYNS----------------------------------------CTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       153 ~~~~~~~~~~~---~~~~~----------------------------------------~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      +.+++.+|+..   -.++.                                        -.|..++.+| .|.++.+.++
T Consensus       379 tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSp-kGewiYcigE  457 (508)
T KOG0275|consen  379 TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSP-KGEWIYCIGE  457 (508)
T ss_pred             chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecC-CCcEEEEEcc
Confidence            87666655211   11111                                        1255778888 6899999999


Q ss_pred             CCeEEEEeCCCCCeE
Q psy11351        190 DFVLYMWRVPRDDIY  204 (224)
Q Consensus       190 d~~v~iw~~~~~~~~  204 (224)
                      |+.++.|.+.+|+..
T Consensus       458 D~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  458 DGVLYCFSVLSGKLE  472 (508)
T ss_pred             CcEEEEEEeecCcee
Confidence            999999999998773

>KOG0281|consensus

Probab=100.00  E-value=2.6e-33  Score=200.41  Aligned_cols=190  Identities=18%  Similarity=0.246  Sum_probs=165.4

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      +.+++|..|.+|+|||.++.++.+.+ +|++.|.|+.|..   ..+++|+.|.+|++||+++++++.++-.|...|..+.
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr  284 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR  284 (499)
T ss_pred             hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence            46899999999999999999988877 9999999999973   6999999999999999999999999999999999999


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCce---eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKE---VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      |+.   .++++++.|.++.+||+.....   ...+.+|...|..+.|+.  +++++++.|.+|++|++.+++.+.++ +|
T Consensus       285 f~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH  359 (499)
T KOG0281|consen  285 FSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH  359 (499)
T ss_pred             EeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc
Confidence            976   6999999999999999987642   223457999999999975  69999999999999999999999998 67


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEe-eCCcee
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVC-RHGSLE  218 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~  218 (224)
                      .-.+.++..        .++++++|+.|.+|++||+..|.+.     .+| ||..+.
T Consensus       360 kRGIAClQY--------r~rlvVSGSSDntIRlwdi~~G~cL-----RvLeGHEeLv  403 (499)
T KOG0281|consen  360 KRGIACLQY--------RDRLVVSGSSDNTIRLWDIECGACL-----RVLEGHEELV  403 (499)
T ss_pred             cccceehhc--------cCeEEEecCCCceEEEEeccccHHH-----HHHhchHHhh
Confidence            666554332        7899999999999999999999886     555 676553

>KOG0319|consensus

Probab=100.00  E-value=6.4e-32  Score=208.74  Aligned_cols=186  Identities=15%  Similarity=0.240  Sum_probs=169.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc----eeeE------EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD----PIDF------YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA   76 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~----~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   76 (224)
                      ..+|+++|.|+++++|++...+    ++..      ..|...|+|++++|++ ++++|||.|++.+||++++.....++.
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLs  502 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLS  502 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEee
Confidence            4689999999999999997622    2221      1699999999999998 899999999999999999889999999


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      +|...+.++.|+| ..+.++|+|.|++|+||.+.+..++..+.+|...|..+.|-.+|+.|++++.||-+++|++.++++
T Consensus       503 GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  503 GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             CCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence            9999999999999 889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        157 VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +.++ .|...+..+...+      ...+++||+.||.|.+|.=.+
T Consensus       582 ~~tlD~H~DrvWaL~~~~------~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  582 EMTLDAHNDRVWALSVSP------LLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhhccceeEEEeecC------ccceeEecCCCeEEEEeecCc
Confidence            9999 6999988866655      788999999999999996444

>KOG0281|consensus

Probab=100.00  E-value=2.4e-32  Score=195.45  Aligned_cols=181  Identities=15%  Similarity=0.228  Sum_probs=163.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---cceeeccCCcCe
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATELAVNSGPF   82 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i   82 (224)
                      .+.+++|+.|.+|++||+++++++.++ +|...|..+.|+.   .++++++.|.++.+||+....   ..+.+.+|...|
T Consensus       247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  323 (499)
T ss_pred             ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence            357999999999999999999999887 9999999999984   699999999999999998765   345678999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-c
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-D  161 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~  161 (224)
                      +.+.|+.   +++++++.|.++++|++.+.+.+..+.+|+..|-|+.+  .++++++|+.|.+|++||++.|.++..+ +
T Consensus       324 NvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG  398 (499)
T KOG0281|consen  324 NVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG  398 (499)
T ss_pred             eeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc
Confidence            9999965   69999999999999999999999999999999998887  4799999999999999999999999998 7


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |+.-+.++.|        +...+++|+.||+|++||+..+..
T Consensus       399 HEeLvRciRF--------d~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  399 HEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             hHHhhhheee--------cCceeeeccccceEEEEecccccC
Confidence            8888887655        788999999999999999988755

>KOG0265|consensus

Probab=100.00  E-value=4e-31  Score=185.35  Aligned_cols=192  Identities=13%  Similarity=0.138  Sum_probs=168.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCC-CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMAS-GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      .+.++|.+||+|+.|..|.+|++.. .+..... +|.++|..+.|.+++ +.+++++.|++++.||.++|+.++.+++|.
T Consensus        54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~  132 (338)
T KOG0265|consen   54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGKRIRKHKGHT  132 (338)
T ss_pred             EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccceeeehhcccc
Confidence            3567899999999999999999653 2333333 999999999999999 899999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .-++++.-...+..++.+++.|+++++||+|+...... ...+.+++++.|..++..+.+|+-|+.|++||++.+.....
T Consensus       133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~  211 (338)
T KOG0265|consen  133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT  211 (338)
T ss_pred             ceeeecCccccCCeEEEecCCCceEEEEeecccchhhc-cccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence            99999986665667888999999999999997755443 44567899999999999999999999999999999999988


Q ss_pred             c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        160 F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      + +|...+..+..++      ++.++.+-+.|.++++||++.-
T Consensus       212 lsGh~DtIt~lsls~------~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  212 LSGHADTITGLSLSR------YGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             eecccCceeeEEecc------CCCccccccccceEEEEEeccc
Confidence            8 7888888877666      8999999999999999999754

>KOG0310|consensus

Probab=99.98  E-value=6.9e-31  Score=194.53  Aligned_cols=194  Identities=16%  Similarity=0.204  Sum_probs=167.2

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      -.+|+++|+|...|.|+|+|.++...++.+ +|+.++..+.|+|++.+.|++|++|+.+++||+.+......+.+|++-|
T Consensus        77 R~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV  156 (487)
T KOG0310|consen   77 RSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV  156 (487)
T ss_pred             ecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence            467999999999999999997665455555 8999999999999998899999999999999999988766889999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC-Ccceec-
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-SPVAQF-  160 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-~~~~~~-  160 (224)
                      .|.+|+|.++.++++|+.||.|++||++..........|..+|..+.+-|.|..+++++. +.+++||+.+| +.+... 
T Consensus       157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~  235 (487)
T KOG0310|consen  157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF  235 (487)
T ss_pred             EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh
Confidence            999999977889999999999999999987655556679999999999999999999875 45999999865 444444 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|...++++.+..      ++..|++|+-|+.|++||+.+-+..
T Consensus       236 ~H~KtVTcL~l~s------~~~rLlS~sLD~~VKVfd~t~~Kvv  273 (487)
T KOG0310|consen  236 NHNKTVTCLRLAS------DSTRLLSGSLDRHVKVFDTTNYKVV  273 (487)
T ss_pred             cccceEEEEEeec------CCceEeecccccceEEEEccceEEE
Confidence            4888888766555      7899999999999999997776653

>KOG0282|consensus

Probab=99.98  E-value=2.9e-31  Score=196.38  Aligned_cols=190  Identities=14%  Similarity=0.205  Sum_probs=165.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ..++.|..+++++.|+.+++||+++|+++..+.-...++|+.|+|++.+.|++|+.|+.|+.||+++++.++.+..|-+.
T Consensus       265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~  344 (503)
T KOG0282|consen  265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA  344 (503)
T ss_pred             hccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence            46788999999999999999999999999999888899999999999889999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE--------------------------------------------
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM--------------------------------------------  117 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--------------------------------------------  117 (224)
                      |..+.|-+ ++..+++++.|+.+++|+.+.+-....                                            
T Consensus       345 i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk  423 (503)
T KOG0282|consen  345 ILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK  423 (503)
T ss_pred             eeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence            99999999 999999999999999999876422111                                            


Q ss_pred             --eecC--CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        118 --QYGS--CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       118 --~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                        +.+|  .+.-..+.|||||.+|++|+.||.+.+||.++-+.+..+ .|.+.+.     .+.|+|.....++|++.||.
T Consensus       424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci-----~v~wHP~e~Skvat~~w~G~  498 (503)
T KOG0282|consen  424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI-----GVDWHPVEPSKVATCGWDGL  498 (503)
T ss_pred             hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE-----EEEecCCCcceeEecccCce
Confidence              0112  233467899999999999999999999999999998888 4655543     37888877788999999999


Q ss_pred             EEEEe
Q psy11351        193 LYMWR  197 (224)
Q Consensus       193 v~iw~  197 (224)
                      |++|+
T Consensus       499 Ikiwd  503 (503)
T KOG0282|consen  499 IKIWD  503 (503)
T ss_pred             eEecC
Confidence            99996

>KOG0277|consensus

Probab=99.98  E-value=3.3e-31  Score=182.00  Aligned_cols=187  Identities=16%  Similarity=0.254  Sum_probs=161.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      .+.++++|.|++|++|+....+.+.++ +|...|+...|+|..++++++++.|+++++||++.......+..|..+|.++
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC  196 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence            457888899999999999999888888 9999999999999988999999999999999998776666699999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCcc-eec-c
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSPV-AQF-D  161 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~~-~~~-~  161 (224)
                      .|+..+.+.++||+.|+.|+.||+|+.+. +..+.+|.-.|..++|||. ...|++++.|-++++||...+... .+. .
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~  276 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH  276 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence            99998999999999999999999997654 4556689999999999997 568899999999999999865443 344 3


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      |.+-+..     +.|++.++.++++.+-|..++||+.
T Consensus       277 HtEFv~g-----~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  277 HTEFVCG-----LDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cceEEec-----cccccccCceeeecccccceeeecc
Confidence            5555554     4555557889999999999999984

>KOG0264|consensus

Probab=99.98  E-value=9.3e-31  Score=192.23  Aligned_cols=192  Identities=19%  Similarity=0.337  Sum_probs=160.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce-------eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC--Ccccceeecc
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP-------IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR--SREEATELAV   77 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~   77 (224)
                      -.|++++.|++|++||++....       ...+ +|+..|.+++|++...++|++++.|+.+.|||.|  +.++.+...+
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            3789999999999999975432       2334 8999999999999888999999999999999999  5566777889


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc-eeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCC-
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK-EVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSS-  154 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~-  154 (224)
                      |..+++|++|+|.++.+||+|+.|++|.+||+|+.+ ++..+.+|+..|.+|.|+|. ...|++++.|+.+.+||+..- 
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            999999999999999999999999999999999764 45667789999999999997 567888899999999998642 


Q ss_pred             -----------CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        155 -----------SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       155 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                                 .+...|.|.|+...  +....|+|.....+++.++|+.+.||++...
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~k--V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAK--VSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccc--cccccCCCCCCeEEEEecCCceEEEeecccc
Confidence                       22223555555444  3347788877778999999999999998743

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.6e-29  Score=198.08  Aligned_cols=191  Identities=14%  Similarity=0.243  Sum_probs=152.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCcee--------------eEEeccCCeeEEEEcC-CCCcEEEEecCCCEEEEEecCCc--
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPI--------------DFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSR--   69 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~--   69 (224)
                      +..+++++.+.....|+...+..+              ...+|.+.|++++|+| ++ ++|++|+.|++|++||+.++  
T Consensus        32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~  110 (493)
T PTZ00421         32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGL  110 (493)
T ss_pred             CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCcc
Confidence            345667666766777765443211              1338999999999999 55 79999999999999999765  


Q ss_pred             -----ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         70 -----EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        70 -----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                           +++..+.+|...|.+++|+|...++|++++.|+.|++||+++++....+..|...|.+++|+|+|.+|++++.|+
T Consensus       111 ~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg  190 (493)
T PTZ00421        111 TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK  190 (493)
T ss_pred             ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence                 245678899999999999995467999999999999999999888778888999999999999999999999999


Q ss_pred             CcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEc----CCCCeEEEEeCCCCCe
Q psy11351        145 PPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSG----SDDFVLYMWRVPRDDI  203 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~v~iw~~~~~~~  203 (224)
                      .|++||+++++.+..+ .|.+...    ..+.|.+. +..++++    +.|+.|++||+++...
T Consensus       191 ~IrIwD~rsg~~v~tl~~H~~~~~----~~~~w~~~-~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        191 KLNIIDPRDGTIVSSVEAHASAKS----QRCLWAKR-KDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EEEEEECCCCcEEEEEecCCCCcc----eEEEEcCC-CCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999999999888777 4544322    23567774 5555543    3589999999987643

>KOG1407|consensus

Probab=99.97  E-value=4.7e-30  Score=176.95  Aligned_cols=211  Identities=18%  Similarity=0.185  Sum_probs=171.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +.+-.|..|++|+.|+++++|+++..+.....   +|.+.|-.++|+|..+.+|++++.|.+|++||++++++...+...
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~  106 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK  106 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc
Confidence            45678899999999999999999987655433   899999999999988899999999999999999999998888665


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee-----------------------------------------eE
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV-----------------------------------------LM  117 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-----------------------------------------~~  117 (224)
                      .+.| -+.|+| ++.+++.++.|..|...|.++.+..                                         ..
T Consensus       107 ~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s  184 (313)
T KOG1407|consen  107 GENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS  184 (313)
T ss_pred             Ccce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc
Confidence            5544 578899 8889999999999998888763321                                         12


Q ss_pred             eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        118 QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                      +..|.....|+.|+|+|+++++|+.|..+.+||++..-++..+ ++.-+|..+.|+.      ++++|++||+|..|-|=
T Consensus       185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~------dg~~lASaSEDh~IDIA  258 (313)
T KOG1407|consen  185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH------DGRMLASASEDHFIDIA  258 (313)
T ss_pred             cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc------CcceeeccCccceEEeE
Confidence            3348888899999999999999999999999999988888888 5666776655555      89999999999999999


Q ss_pred             eCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        197 RVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      ++++|...-+.+.   ..+.+.|..+|
T Consensus       259 ~vetGd~~~eI~~---~~~t~tVAWHP  282 (313)
T KOG1407|consen  259 EVETGDRVWEIPC---EGPTFTVAWHP  282 (313)
T ss_pred             ecccCCeEEEeec---cCCceeEEecC
Confidence            9999987522222   34455555554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.7e-29  Score=208.11  Aligned_cols=188  Identities=19%  Similarity=0.300  Sum_probs=158.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +.+|++++.||+|++||+.+++.+..+ +|...|++++|+|.++.+|++|+.|++|++||++++..+..+..+ ..+.++
T Consensus       545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v  623 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCV  623 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEE
Confidence            578999999999999999998887777 899999999999743389999999999999999998888777654 579999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCc-eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC------Ccce
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPK-EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS------SPVA  158 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~------~~~~  158 (224)
                      .|++.++.++++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.+|++++.|+.|++||++.+      .++.
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~  702 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH  702 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence            9976578999999999999999998765 345667899999999997 6789999999999999999753      4455


Q ss_pred             ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        159 QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .+ .|...++.     ++|+| ++.+|++|+.|+.|++|+.....
T Consensus       703 ~~~gh~~~i~~-----v~~s~-~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        703 SFMGHTNVKNF-----VGLSV-SDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             EEcCCCCCeeE-----EEEcC-CCCEEEEEeCCCEEEEEECCCCC
Confidence            55 45554444     55666 68999999999999999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=9.8e-29  Score=182.62  Aligned_cols=195  Identities=22%  Similarity=0.322  Sum_probs=169.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++.++++++++.||.+++|++.+++..... .|...+..+.|+|++ +.+++++.|+.|++||+++++....+..|..
T Consensus        16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~   94 (289)
T cd00200          16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTS   94 (289)
T ss_pred             EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccceEEEeccCC
Confidence            34566789999999999999999988766655 788899999999998 7999999999999999998888888888888


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .+.++.|++ ++.++++++.++.+.+||+++.+....+..|...+.+++|+|++.++++++.++.+++||+++++.+..+
T Consensus        95 ~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200          95 YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             cEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence            999999999 7888888888999999999988777777788899999999999999988888999999999988887777


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .+...+..     +.|+| +++.+++++.|+.+++||++.++..
T Consensus       174 ~~~~~~i~~-----~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~  212 (289)
T cd00200         174 TGHTGEVNS-----VAFSP-DGEKLLSSSSDGTIKLWDLSTGKCL  212 (289)
T ss_pred             ecCccccce-----EEECC-CcCEEEEecCCCcEEEEECCCCcee
Confidence             45445554     56666 6778888888999999999987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=5.5e-29  Score=207.75  Aligned_cols=192  Identities=15%  Similarity=0.212  Sum_probs=159.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC----c----eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG----D----PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~----~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      +++.+++++|+|+.|++|+|||....    .    +.....+...+.+++|+|....+|++++.||+|++||+.+++.+.
T Consensus       490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~  569 (793)
T PLN00181        490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT  569 (793)
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            45678899999999999999998642    1    222334567899999998654899999999999999999999888


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEc-CCCCeEeeeecCCCcEEEECC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN-KAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      .+.+|...|.+++|+|.++.+|++|+.|+.|++||++++.....+.. ...+.++.|+ +++.+|++|+.|+.|++||++
T Consensus       570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~  648 (793)
T PLN00181        570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLR  648 (793)
T ss_pred             EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999999975788999999999999999998877666654 4678999995 579999999999999999998


Q ss_pred             CCC-cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        153 SSS-PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       153 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +.+ ++..+ .|...+..     +.|.  ++.+|++++.|+.|++||+..+
T Consensus       649 ~~~~~~~~~~~h~~~V~~-----v~f~--~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        649 NPKLPLCTMIGHSKTVSY-----VRFV--DSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             CCCccceEecCCCCCEEE-----EEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence            765 34444 56666655     4454  5778999999999999999754

>KOG0640|consensus

Probab=99.97  E-value=7.2e-30  Score=180.32  Aligned_cols=195  Identities=17%  Similarity=0.286  Sum_probs=164.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC------------------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG------------------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVL   62 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~------------------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~   62 (224)
                      +++.+|.++|+|+.|..|+|.|++..                  ..++++ .|..+|+++.|+|.. ..|++|+.|++|+
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvK  197 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVK  197 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-heEEeccCCCeEE
Confidence            46788999999999999999998621                  134444 899999999999997 8999999999999


Q ss_pred             EEecCCcccceeec--cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee---cCCCceeEEEEcCCCCeE
Q psy11351         63 LFDTRSREEATELA--VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY---GSCESCMSIRFNKAGTQL  137 (224)
Q Consensus        63 iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l  137 (224)
                      ++|+......+.++  ....++.++.|+| .+.+++.|..-..+++||+.+.++...-.   .|.+.|+++.+++.++..
T Consensus       198 lFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  198 LFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             EEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence            99998665433332  2346899999999 99999999999999999999887644332   589999999999999999


Q ss_pred             eeeecCCCcEEEECCCCCcceecc--cCC-cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        138 LGLRRRLPPVLYNTRSSSPVAQFD--HEG-YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++++.||.|++||--+++++.+++  |.+ .+.+     +.|.. +++++++.+.|..+++|.+.++...
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS-----a~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS-----AVFTK-NGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHHhhcCCceeee-----EEEcc-CCeEEeecCCcceeeeeeecCCceE
Confidence            999999999999999999999993  544 3333     44444 8999999999999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.4e-28  Score=181.78  Aligned_cols=193  Identities=21%  Similarity=0.307  Sum_probs=168.3

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .+.++++++++.||.|++||+.+++....+ .|...+.++.|+|++ +++++++.|+.+.+||+++++....+..|...+
T Consensus        60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i  138 (289)
T cd00200          60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV  138 (289)
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence            455678999999999999999987766666 788899999999997 788888889999999999888888888899999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-c
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-D  161 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~  161 (224)
                      .+++|+| ++.++++++.++.+++||+++++....+..|...+.++.|+|+++.+++++.++.+++||+++++.+..+ .
T Consensus       139 ~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~  217 (289)
T cd00200         139 NSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG  217 (289)
T ss_pred             EEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh
Confidence            9999999 7888888888999999999988777777788889999999999999999999999999999988888877 5


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +...+..     +.|+| ++.++++++.|+.+++|++.+++..
T Consensus       218 ~~~~i~~-----~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         218 HENGVNS-----VAFSP-DGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             cCCceEE-----EEEcC-CCcEEEEEcCCCcEEEEEcCCceeE
Confidence            6554443     66776 5888888888999999999987654

>KOG0269|consensus

Probab=99.97  E-value=1e-30  Score=203.12  Aligned_cols=193  Identities=17%  Similarity=0.231  Sum_probs=163.5

Q ss_pred             cceEEEEEeCCCcEEEEeCCC---CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          6 PIKVLRVIGNDDHVISHDMAS---GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~---~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ..+++|+++..|.|.+||+..   .+.+..+ .|+..+++++|++..+++|++|++||+|++||++..+...++.+....
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence            346899999999999999987   4444555 899999999999999999999999999999999999999999888889


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      |.++.|+|..+..|+++...|.+.+||+|.... ...+..|.++|.++.|+|++.+|++|+.|+.|+|||..+++.....
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~  258 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH  258 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence            999999998899999999999999999997643 4556689999999999999999999999999999999866543333


Q ss_pred             --ccCCcccceeeeEEEEeCCCCeEEEEcCC--CCeEEEEeCCCCCe
Q psy11351        161 --DHEGYYNSCTMKSCCFAGTQDEYVVSGSD--DFVLYMWRVPRDDI  203 (224)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~v~iw~~~~~~~  203 (224)
                        ....++.     .+.|-|.....|++++.  |-.|+|||++..-+
T Consensus       259 tInTiapv~-----rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI  300 (839)
T KOG0269|consen  259 TINTIAPVG-----RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI  300 (839)
T ss_pred             EEeecceee-----eeeeccCccchhhhhhccccceEEEEeeccccc
Confidence              2333444     46777766667887764  78999999987644

>KOG0283|consensus

Probab=99.97  E-value=8.6e-30  Score=199.50  Aligned_cols=199  Identities=17%  Similarity=0.173  Sum_probs=160.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCC--------------------------------C---------------------
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMAS--------------------------------G---------------------   27 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~--------------------------------~---------------------   27 (224)
                      |-++++|+|||+|++||.|+||.+..                                .                     
T Consensus       273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~  352 (712)
T KOG0283|consen  273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL  352 (712)
T ss_pred             EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence            34678999999999999999998654                                0                     


Q ss_pred             -------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEec
Q psy11351         28 -------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN   99 (224)
Q Consensus        28 -------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~   99 (224)
                             +++..+ ||.+.|.++.|+.+  ++|++++.|++|+||++...+++..| .|..-|+|++|+|.+.++|++|+
T Consensus       353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGS  429 (712)
T KOG0283|consen  353 KAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGS  429 (712)
T ss_pred             ccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecc
Confidence                   122333 79999999999987  59999999999999999999999888 68899999999999999999999


Q ss_pred             CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc---cC-CcccceeeeEEE
Q psy11351        100 SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD---HE-GYYNSCTMKSCC  175 (224)
Q Consensus       100 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~---~~-~~~~~~~~~~~~  175 (224)
                      -||+++||++...+. .....-..-|++++|.|+|++.++|+.+|.+++|+++..+....+.   +. ..+..-.+..+.
T Consensus       430 LD~KvRiWsI~d~~V-v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q  508 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKV-VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ  508 (712)
T ss_pred             cccceEEeecCcCee-EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence            999999999987654 3444455899999999999999999999999999998876665541   11 111111344566


Q ss_pred             EeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        176 FAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       176 ~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |.|.+...+++.+.|.+|+|||.++.+.
T Consensus       509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~l  536 (712)
T KOG0283|consen  509 FFPGDPDEVLVTSNDSRIRIYDGRDKDL  536 (712)
T ss_pred             ecCCCCCeEEEecCCCceEEEeccchhh
Confidence            7765566677778999999999966544

>KOG0292|consensus

Probab=99.97  E-value=2.5e-29  Score=198.37  Aligned_cols=193  Identities=18%  Similarity=0.282  Sum_probs=170.1

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .+.--+++++-..|.|++||.+.+.++..| +|.++|..++|+|++ .+|++|+.|..|++|+..+.+++.++.+|-+-|
T Consensus        18 HP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrclftL~GHlDYV   96 (1202)
T KOG0292|consen   18 HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV   96 (1202)
T ss_pred             CCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceehhhhcccccee
Confidence            334448899999999999999999999888 999999999999999 699999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc-----
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV-----  157 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~-----  157 (224)
                      ..+.|++ .-.+++++|.|.+|+||+..+.+++..+.+|...|.|.+|+|....+++++-|.+|++||+...+..     
T Consensus        97 Rt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg  175 (1202)
T KOG0292|consen   97 RTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG  175 (1202)
T ss_pred             EEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence            9999999 8899999999999999999999999999999999999999999999999999999999998531110     


Q ss_pred             ----------------------ee--c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        158 ----------------------AQ--F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       158 ----------------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                            -.  + +|.-.++   |  ++|+| .-.++++|+.|+.|++|.+...+-|
T Consensus       176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN---w--aAfhp-TlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN---W--AAFHP-TLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             CchhhhhccccchhhcCCcCeeeeeeecccccccc---e--EEecC-CcceEEecCCcceeeEEEeccccce
Confidence                                  01  1 2333333   3  67777 5789999999999999999988775

>KOG0274|consensus

Probab=99.97  E-value=6.5e-29  Score=195.19  Aligned_cols=183  Identities=19%  Similarity=0.275  Sum_probs=166.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +.++++|+.|.++++||..++++...+ +|.+.+.++...+   ..+++|+.|.+|++|++.++..+..+.+|.++|.++
T Consensus       261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            678999999999999999999999998 8999999999874   688899999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC-Ccceec-ccC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-SPVAQF-DHE  163 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-~~~~~~-~~~  163 (224)
                      ..+   +.++++|+.|+.|++||+++++.+..+.+|...|+++.+.+. +.+++|+.|++|++||+++. +++..+ .|.
T Consensus       338 ~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~  413 (537)
T KOG0274|consen  338 QLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT  413 (537)
T ss_pred             Eec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence            985   689999999999999999999999999999999999988766 89999999999999999999 888888 465


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +-++.+.+        .+++|++++.|+.|++||..++++.
T Consensus       414 ~~v~~l~~--------~~~~Lvs~~aD~~Ik~WD~~~~~~~  446 (537)
T KOG0274|consen  414 SLVSSLLL--------RDNFLVSSSADGTIKLWDAEEGECL  446 (537)
T ss_pred             cccccccc--------ccceeEeccccccEEEeecccCcee
Confidence            65544332        6789999999999999999999886

>KOG0645|consensus

Probab=99.97  E-value=2.3e-28  Score=169.43  Aligned_cols=197  Identities=16%  Similarity=0.230  Sum_probs=160.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc---cccee
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR---EEATE   74 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~   74 (224)
                      +|..+.|++|++||.|.++.||.-..++  ++..+ +|+.+|.|++|+++| ++||+++.|+.|-||.+..+   ++...
T Consensus        67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            4667889999999999999999987664  55555 999999999999999 89999999999999998754   35678


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC---CceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK---PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ++.|...|..+.|+| ...+|++++.|.+|++|+-..   ..+...+.+|...|.+++|++.|..|++++.|++++||..
T Consensus       146 L~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             eccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            899999999999999 899999999999999998762   3457778889999999999999999999999999999973


Q ss_pred             CCC------Ccce-------------------ec--------------ccCCcccceeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        152 RSS------SPVA-------------------QF--------------DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       152 ~~~------~~~~-------------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                      .+.      ..+.                   .+              .+........+.++.|.|...++|++|+.||.
T Consensus       225 ~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  225 YTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             ccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence            211      0010                   11              00111223345678888855789999999999


Q ss_pred             EEEEeCC
Q psy11351        193 LYMWRVP  199 (224)
Q Consensus       193 v~iw~~~  199 (224)
                      |++|.+.
T Consensus       305 v~~W~l~  311 (312)
T KOG0645|consen  305 VNFWELE  311 (312)
T ss_pred             EEEEEec
Confidence            9999874

>KOG0288|consensus

Probab=99.97  E-value=1.6e-29  Score=184.07  Aligned_cols=197  Identities=16%  Similarity=0.193  Sum_probs=172.7

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      |+++.+++.+++++.|+.+++|++...+...++ +|.+.|+++.|.... ..+++|+.|.+|++||+....+.+++.. .
T Consensus       225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~  302 (459)
T KOG0288|consen  225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLP-G  302 (459)
T ss_pred             eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccc-c
Confidence            456788999999999999999999999988888 999999999999876 5699999999999999999888777654 3


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      +.+.+|+.+   ...+++|..|++|++||++...+......+ +.|+++..++++..+++++.|.++.++|+++.+....
T Consensus       303 S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~  378 (459)
T KOG0288|consen  303 SQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT  378 (459)
T ss_pred             ccccceEec---ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence            456777765   468899999999999999998777666655 4999999999999999999999999999999988888


Q ss_pred             cccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 FDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +...+...+..++.++|+| ++.|+++||.||.|+||++.++++.
T Consensus       379 ~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  379 FSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLE  422 (459)
T ss_pred             eeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEE
Confidence            8655555566688899999 7999999999999999999999885

>KOG0276|consensus

Probab=99.97  E-value=6.9e-29  Score=189.35  Aligned_cols=192  Identities=16%  Similarity=0.222  Sum_probs=171.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      .-+++++-..|.|.|||.+++..++.+ -.+-+|.+..|-+.. +++++|+.|..|++|+.++++.++.+..|..-|.++
T Consensus        25 ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~i  103 (794)
T KOG0276|consen   25 EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSI  103 (794)
T ss_pred             CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccceeeEEeeccccceeee
Confidence            347888889999999999999999988 467799999999987 899999999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCc-eeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPK-EVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      +.+| ...++++++.|-.|++||....- +...+.+|...|.+++|+|. .+.+++++-|++|++|.+.+..+..++ +|
T Consensus       104 avHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH  182 (794)
T KOG0276|consen  104 AVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH  182 (794)
T ss_pred             eecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc
Confidence            9999 88999999999999999998653 45566789999999999994 679999999999999999999999988 78


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...++++.+.+    ..+..+|++|+.|..++|||.++..+.
T Consensus       183 ekGVN~Vdyy~----~gdkpylIsgaDD~tiKvWDyQtk~CV  220 (794)
T KOG0276|consen  183 EKGVNCVDYYT----GGDKPYLISGADDLTIKVWDYQTKSCV  220 (794)
T ss_pred             ccCcceEEecc----CCCcceEEecCCCceEEEeecchHHHH
Confidence            88888854433    124469999999999999999998875

>KOG0293|consensus

Probab=99.97  E-value=2e-28  Score=178.64  Aligned_cols=213  Identities=18%  Similarity=0.199  Sum_probs=163.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce---eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec-
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP---IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA-   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-   76 (224)
                      .++++|++||+++.|.+..+|++.....   .+++ +|..+|..+.|+||+ ++|++|+.|..+.+||+.+|...+.+. 
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~y~~  309 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHLYPS  309 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhhccc
Confidence            3578999999999999999999865433   3344 899999999999998 899999999999999999999877774 


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-CCCceeEEEEcCCCCeEeeeecCCCcEEEECCC--
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS--  153 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~--  153 (224)
                      ++...+.+++|.| ++..+++|+.|+.+..||+... ......+ ....|.+++..+||+++++.+.|..+++|+.++  
T Consensus       310 ~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~  387 (519)
T KOG0293|consen  310 GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV  387 (519)
T ss_pred             CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence            3467899999999 9999999999999999999754 2333322 345688999999999988888887776666543  


Q ss_pred             ---------------------------------------CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEE
Q psy11351        154 ---------------------------------------SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY  194 (224)
Q Consensus       154 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~  194 (224)
                                                             .+.+..+  .|+..+--+..-||...+..++++||+|+.|+
T Consensus       388 dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY--~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy  465 (519)
T KOG0293|consen  388 DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY--FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY  465 (519)
T ss_pred             hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh--hcccccceEEEeccCCCCcceEEecCCCceEE
Confidence                                                   2222222  11112222345677776678999999999999


Q ss_pred             EEeCCCCCeEeeeeeeEe-eCCce--eEEEeeC
Q psy11351        195 MWRVPRDDIYVSSDIYVC-RHGSL--EVSILPA  224 (224)
Q Consensus       195 iw~~~~~~~~~~~~~~~~-~~~~~--~~~~~p~  224 (224)
                      ||+..++++.     .+| ||+.-  .|+..|+
T Consensus       466 IWhr~sgkll-----~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  466 IWHRISGKLL-----AVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             EEEccCCcee-----EeecCCcceeeEEecCCC
Confidence            9999999988     777 88743  3555553

>KOG1446|consensus

Probab=99.97  E-value=2.1e-27  Score=167.77  Aligned_cols=199  Identities=14%  Similarity=0.151  Sum_probs=162.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecC--CCEEEEEecCCcccceeecc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACD--DGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~   77 (224)
                      |..+++|.+++++++|.+++|||..+++..+.+ .+...+..++|.... +.++.++.  |.+|+..++.+.+.++.+.+
T Consensus        20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryLsl~dNkylRYF~G   98 (311)
T KOG1446|consen   20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYLSLHDNKYLRYFPG   98 (311)
T ss_pred             EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEEEeecCceEEEcCC
Confidence            356788999999999999999999999999888 556678888887665 56666665  89999999999999999999


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--------------------------------------
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--------------------------------------  119 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--------------------------------------  119 (224)
                      |...|.+++.+| .+..+++++.|++|++||+|..++...+.                                      
T Consensus        99 H~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen   99 HKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             CCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence            999999999999 77999999999999999999654322110                                      


Q ss_pred             -------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        120 -------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       120 -------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                             +.....+.+.|||+|++++.+...+.+++.|.-+|..+..+. +... ..+. ..++|+| +++++++|+.||
T Consensus       178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~-~~~~-~~a~ftP-ds~Fvl~gs~dg  254 (311)
T KOG1446|consen  178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA-GNLP-LSATFTP-DSKFVLSGSDDG  254 (311)
T ss_pred             eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC-CCcc-eeEEECC-CCcEEEEecCCC
Confidence                   123455788899999998888888888999988888777773 2221 1112 3478888 799999999999


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      +|.+|+++++...
T Consensus       255 ~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  255 TIHVWNLETGKKV  267 (311)
T ss_pred             cEEEEEcCCCcEe
Confidence            9999999999885

>KOG0313|consensus

Probab=99.96  E-value=2.5e-28  Score=176.23  Aligned_cols=187  Identities=17%  Similarity=0.238  Sum_probs=157.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC-------------------------ceeeEE-eccCCeeEEEEcCCCCcEEEEe
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG-------------------------DPIDFY-LHERPVYGLSVDPSQDAIFASA   55 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~   55 (224)
                      ++...+..+++|+.|.+|+||+.++.                         .++.++ +|..+|.++.|++.  ..++++
T Consensus       200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~  277 (423)
T KOG0313|consen  200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSV  277 (423)
T ss_pred             EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEee
Confidence            45677899999999999999993221                         133344 89999999999984  689999


Q ss_pred             cCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc---eeeEeecCCCceeEEEEcC
Q psy11351         56 CDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK---EVLMQYGSCESCMSIRFNK  132 (224)
Q Consensus        56 ~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~~  132 (224)
                      +.|.+|+.||+.+++.+..+.. ...++++..+| ...+|++|+.|..+++||.|++.   ....+.+|+..|.++.|+|
T Consensus       278 SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  278 SWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             cccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence            9999999999999998888766 45699999999 99999999999999999999764   2455668999999999999


Q ss_pred             CCC-eEeeeecCCCcEEEECCCCC-cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        133 AGT-QLLGLRRRLPPVLYNTRSSS-PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       133 ~~~-~l~~~~~d~~v~v~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ... .|++++.|+++++||+++.+ ++..+ +|...+-++.     |.  ++.++++|+.|.+|+|+.-.
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd-----W~--~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD-----WN--EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe-----cc--CCceEEeccCcceEEEeccc
Confidence            755 67789999999999999887 88888 7877776644     43  57899999999999998643

>KOG0274|consensus

Probab=99.96  E-value=2.1e-28  Score=192.34  Aligned_cols=193  Identities=16%  Similarity=0.217  Sum_probs=171.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeE-E-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDF-Y-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      ..++++++.|++|++||..++..+.. + +|.+.|.++++..-+ .++++|+.|.++++||..++++.+.+.+|.+.+.+
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~  296 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRC  296 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEE
Confidence            35788999999999999999998887 5 999999999998744 89999999999999999999999999999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccC
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHE  163 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~  163 (224)
                      +...+   ..+++|+.|.+|++|++.++..+..+.+|.++|.++..+  +.++++|+.|++|++||+.+++++..+ +|.
T Consensus       297 ~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~  371 (537)
T KOG0274|consen  297 LTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT  371 (537)
T ss_pred             EEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence            98754   788889999999999999998888888899999999998  799999999999999999999999999 788


Q ss_pred             CcccceeeeEEEEeCCCC-eEEEEcCCCCeEEEEeCCCC-CeEeeeeeeEe-eCCcee
Q psy11351        164 GYYNSCTMKSCCFAGTQD-EYVVSGSDDFVLYMWRVPRD-DIYVSSDIYVC-RHGSLE  218 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~v~iw~~~~~-~~~~~~~~~~~-~~~~~~  218 (224)
                      +.|.++.+        ++ ..+++|+.|+.|++||+.+. ++.     ..+ +|.++.
T Consensus       372 ~~V~sl~~--------~~~~~~~Sgs~D~~IkvWdl~~~~~c~-----~tl~~h~~~v  416 (537)
T KOG0274|consen  372 GRVYSLIV--------DSENRLLSGSLDTTIKVWDLRTKRKCI-----HTLQGHTSLV  416 (537)
T ss_pred             ceEEEEEe--------cCcceEEeeeeccceEeecCCchhhhh-----hhhcCCcccc
Confidence            88877543        44 89999999999999999999 554     444 555544

>KOG0313|consensus

Probab=99.96  E-value=5.5e-28  Score=174.45  Aligned_cols=186  Identities=18%  Similarity=0.221  Sum_probs=157.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceee----E-EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC--------------
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPID----F-YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--------------   68 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~----~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------   68 (224)
                      ..|++++.|.++++|..+.++...    . .||...|.+++..+++ ..+++|+.|.+|+||+...              
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhh
Confidence            469999999999999998876432    1 2899999999999999 8999999999999999321              


Q ss_pred             -----------cccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeE
Q psy11351         69 -----------REEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL  137 (224)
Q Consensus        69 -----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (224)
                                 +.++..+.+|..+|.++.|++  ...+++++.|.+|+.||+.+++....+. ......++.++|..++|
T Consensus       239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll  315 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLL  315 (423)
T ss_pred             hhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeeccccccee
Confidence                       124557789999999999987  6789999999999999999997766665 45678999999999999


Q ss_pred             eeeecCCCcEEEECCCCCc---ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        138 LGLRRRLPPVLYNTRSSSP---VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ++|+.|..+++||.+++.-   .+.+ +|...|..     +.|+|.+...|++|+.|+++++||+++.+
T Consensus       316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss-----vkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS-----VKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             eecCCCCceeecCCCCCCCceeEEeeecchhhhhh-----eecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            9999999999999987632   2333 67776655     77888888889999999999999999887

>KOG0283|consensus

Probab=99.96  E-value=3.7e-28  Score=190.42  Aligned_cols=188  Identities=19%  Similarity=0.236  Sum_probs=156.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      +++|++++-|.+||||++...+++..|.|..-|+|++|+|.+.++|++|+-|+.++||++...+.+.-... ..-|++++
T Consensus       380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvc  458 (712)
T KOG0283|consen  380 NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVC  458 (712)
T ss_pred             CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEE
Confidence            46899999999999999999999999999999999999998889999999999999999987775443333 47799999


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCceeeEee---------cCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCc
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKEVLMQY---------GSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      |.| +|+..+.|+.+|.+++|+++..+......         .+. .|+.+.|.|.. ..+++.+.|..|+|||.+...+
T Consensus       459 y~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l  536 (712)
T KOG0283|consen  459 YSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL  536 (712)
T ss_pred             ecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence            999 89999999999999999998765433322         133 79999999854 3577788999999999998888


Q ss_pred             ceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        157 VAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       157 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +..|+ ....   -.-..+.|+. +|++|+++++|..|++|+....
T Consensus       537 v~KfKG~~n~---~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  537 VHKFKGFRNT---SSQISASFSS-DGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             hhhhcccccC---CcceeeeEcc-CCCEEEEeecCceEEEEeCCCC
Confidence            88883 2221   1233467777 8999999999999999998543

>KOG0264|consensus

Probab=99.96  E-value=3.1e-28  Score=179.07  Aligned_cols=189  Identities=20%  Similarity=0.298  Sum_probs=158.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCc--e---------eeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc------
Q psy11351          8 KVLRVIGNDDHVISHDMASGD--P---------IDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE------   70 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~--~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------   70 (224)
                      .++|+.+..+.|.|||..+..  .         ++..+|...-++++|++..+-.|++++.|++|++||+....      
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~  217 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV  217 (422)
T ss_pred             cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence            578899999999999986432  1         13448999899999999887899999999999999997543      


Q ss_pred             -cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC--CceeeEeecCCCceeEEEEcCC-CCeEeeeecCCCc
Q psy11351         71 -EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK--PKEVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPP  146 (224)
Q Consensus        71 -~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v  146 (224)
                       +...+.+|+..|..++|++.+..+|++++.|+.+.|||+|+  .+.......|.+.+.|++|+|. +..||+|+.|++|
T Consensus       218 ~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  218 DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE
Confidence             34567899999999999998999999999999999999994  4455556679999999999996 5577889999999


Q ss_pred             EEEECCCC-Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        147 VLYNTRSS-SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       147 ~v~d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .+||+|+. +++..+ .|...+..     +.|+|.....|++++.|+.+.+||+..-
T Consensus       298 ~LwDlRnL~~~lh~~e~H~dev~~-----V~WSPh~etvLASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  298 ALWDLRNLNKPLHTFEGHEDEVFQ-----VEWSPHNETVLASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             EEeechhcccCceeccCCCcceEE-----EEeCCCCCceeEecccCCcEEEEecccc
Confidence            99999985 445555 57666554     7888888889999999999999999753

>KOG0643|consensus

Probab=99.96  E-value=3.4e-27  Score=163.44  Aligned_cols=193  Identities=15%  Similarity=0.207  Sum_probs=166.3

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      .+++|.+|.+++.|.+..+|-..+|+.+-++ +|.+.|+|++.+.+. +.+++|+.|.++++||+++|+.+..++. ..+
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~   95 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWKT-NSP   95 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEeec-CCe
Confidence            4788999999999999999999999999988 999999999999987 8999999999999999999999888865 567


Q ss_pred             eEEEEEcCCCCCeEEEec-----CCCcEEEEecCC-------CceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         82 FHAVMFNPVEARLVATAN-----SKDGIALYDTRK-------PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      |..+.|++ ++++++...     ..+.|.++|++.       .++...+..+.+.++.+-|.|-+++|++|..||.|..|
T Consensus        96 Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~  174 (327)
T KOG0643|consen   96 VKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIY  174 (327)
T ss_pred             eEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEE
Confidence            99999999 777776664     346699999983       34466666788999999999999999999999999999


Q ss_pred             ECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        150 NTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       150 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      |+++++.+..-  .|...++.     +++++ +..++++++.|.+-++||+.+-+..
T Consensus       175 da~~g~~~v~s~~~h~~~Ind-----~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  175 DARTGKELVDSDEEHSSKIND-----LQFSR-DRTYFITGSKDTTAKLVDVRTLEVL  225 (327)
T ss_pred             EcccCceeeechhhhcccccc-----ccccC-CcceEEecccCccceeeeccceeeE
Confidence            99998665444  46666666     45555 7999999999999999999987663

>KOG0316|consensus

Probab=99.96  E-value=5.9e-28  Score=164.56  Aligned_cols=176  Identities=13%  Similarity=0.144  Sum_probs=156.7

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      .+.++|..+.|+-+| ++.++++.|++|++|+...+..++++.+|..+|..++.+. ++..+++|+.|..+.+||+.+++
T Consensus        15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             ccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccCe
Confidence            789999999999999 8999999999999999999999999999999999999998 88999999999999999999999


Q ss_pred             eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC--Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        114 EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS--SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      ....+.+|.+.|..++|+.+...+++|+.|.++++||.++.  +|++.+ .....+.++.+        .+..+++|+.|
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--------~~heIvaGS~D  164 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--------AEHEIVAGSVD  164 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--------cccEEEeeccC
Confidence            99999999999999999999999999999999999999764  677777 45556665444        57889999999


Q ss_pred             CeEEEEeCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        191 FVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       191 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      |+++.||++.|...    ...+||+.-.+++.|
T Consensus       165 GtvRtydiR~G~l~----sDy~g~pit~vs~s~  193 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLS----SDYFGHPITSVSFSK  193 (307)
T ss_pred             CcEEEEEeecceee----hhhcCCcceeEEecC
Confidence            99999999999875    122378877777765

>KOG0292|consensus

Probab=99.96  E-value=6.1e-28  Score=190.61  Aligned_cols=194  Identities=13%  Similarity=0.142  Sum_probs=165.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ++.+.+-++++|+.|-+|++|+.++.+++.++ +|-..|..+.|++.- .+++++|.|.+|+||+..+++++..+.+|..
T Consensus        58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnH  136 (1202)
T KOG0292|consen   58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNH  136 (1202)
T ss_pred             eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence            45566779999999999999999999998777 999999999999998 6999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-----------------------------eeEeecCCCceeEEEEc
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-----------------------------VLMQYGSCESCMSIRFN  131 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-----------------------------~~~~~~~~~~v~~~~~~  131 (224)
                      -|.|.+|+| ...+++++|-|.+|++||+...+.                             ...+.+|...|.-++|+
T Consensus       137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh  215 (1202)
T KOG0292|consen  137 YVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH  215 (1202)
T ss_pred             EEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence            999999999 889999999999999999853110                             01133688899999999


Q ss_pred             CCCCeEeeeecCCCcEEEECCCCCcce--ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        132 KAGTQLLGLRRRLPPVLYNTRSSSPVA--QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       132 ~~~~~l~~~~~d~~v~v~d~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |.-..+++|+.|..|++|.....+.-.  +. +|.+.|.+     +.|+| ..+++++.++|+.+++||+...+.
T Consensus       216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss-----vlfhp-~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS-----VLFHP-HQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce-----EEecC-ccceeEecCCCccEEEEecccccc
Confidence            999999999999999999886543322  22 46666655     56666 789999999999999999987654

>KOG0294|consensus

Probab=99.96  E-value=1.8e-27  Score=168.13  Aligned_cols=192  Identities=17%  Similarity=0.281  Sum_probs=154.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCC-CcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQ-DAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      .+.++|+|+.|-+|+|||+.+...+..+ .|.+.|+++.|.+.- .+.|++|+.||.|.+|+...-..+..+++|.+.|+
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence            4579999999999999999988777666 899999999999764 23899999999999999999999999999999999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-c--------------------------------------CCCc
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-G--------------------------------------SCES  124 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~--------------------------------------~~~~  124 (224)
                      .++.+| .+++.++.+.|+.+++|++-+++.-.... .                                      ....
T Consensus       132 ~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r  210 (362)
T KOG0294|consen  132 DLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKR  210 (362)
T ss_pred             eeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcccc
Confidence            999999 99999999999999999997664322111 0                                      0111


Q ss_pred             eeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        125 CMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.++.|. ++..|++|..|+.|.+||.....+...+ .|..+|..+.+..    .+++.+|+|++.||.|++||++....
T Consensus       211 ~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  211 ILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEcccccc
Confidence            2333332 3456778888888999999888888888 6888887755322    22578999999999999999987743

>KOG0296|consensus

Probab=99.96  E-value=2.9e-27  Score=169.96  Aligned_cols=193  Identities=13%  Similarity=0.191  Sum_probs=170.6

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .++.++++||+.|....+|++.+++....+ +|...|+++.|+.+| .+||+|+.+|.|+||+..++.....+...-..|
T Consensus        73 ~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~di  151 (399)
T KOG0296|consen   73 HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDI  151 (399)
T ss_pred             CCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCce
Confidence            346789999999999999999999977666 999999999999999 899999999999999999999888886556779


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-  161 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-  161 (224)
                      .-+.|+| ...+|+.|+.||.+-+|.+.+......+.+|..++++=.|.|+|+.++++..|++|++|++.++.++..+. 
T Consensus       152 eWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~  230 (399)
T KOG0296|consen  152 EWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ  230 (399)
T ss_pred             EEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc
Confidence            9999999 99999999999999999999877777888999999999999999999999999999999999999998884 


Q ss_pred             -cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        162 -HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       ......++.+..      .+..+++|+.++.+++-+..+|+..
T Consensus       231 ~e~~~~~~~~~~~------~~~~~~~g~~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  231 AEGLELPCISLNL------AGSTLTKGNSEGVACGVNNGSGKVV  268 (399)
T ss_pred             cccCcCCcccccc------ccceeEeccCCccEEEEccccceEE
Confidence             222334444433      6888999999999999988888774

>KOG0643|consensus

Probab=99.96  E-value=2.2e-27  Score=164.38  Aligned_cols=196  Identities=16%  Similarity=0.222  Sum_probs=161.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEe-----cCCCEEEEEecC-------Cc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASA-----CDDGRVLLFDTR-------SR   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~-------~~   69 (224)
                      +++...+.+++|+.|.++++||+++|+.+..+....+|..+.|+++| ++++..     +..+.|.++|++       ..
T Consensus        59 Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   59 DIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             EecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            45677789999999999999999999999999999999999999998 565554     345789999998       44


Q ss_pred             ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-ecCCCceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-YGSCESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        70 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                      ++...+..+.+.++.+-|.| -++.|++|..||.|.+||+++++..... ..|...|+.++++|+..++++++.|.+-++
T Consensus       138 ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             CceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence            56777888889999999999 8999999999999999999998665544 468999999999999999999999999999


Q ss_pred             EECCCCCcceecccCCccccee---------------------------------------------------eeEEEEe
Q psy11351        149 YNTRSSSPVAQFDHEGYYNSCT---------------------------------------------------MKSCCFA  177 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~  177 (224)
                      ||.++.+.++++.-..++++.+                                                   +..++|+
T Consensus       217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            9987655444432222222211                                                   3457777


Q ss_pred             CCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        178 GTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       178 ~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      | +|...++|++||.|++.-...
T Consensus       297 P-dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  297 P-DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             C-CCcccccCCCCceEEEEEecc
Confidence            7 799999999999999986554

>KOG0275|consensus

Probab=99.96  E-value=2e-29  Score=179.33  Aligned_cols=163  Identities=13%  Similarity=0.237  Sum_probs=149.0

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee--------ccCCcCeEEEEEcCCCCCeEEEecCCCcEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL--------AVNSGPFHAVMFNPVEARLVATANSKDGIA  105 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~  105 (224)
                      +..+.+.|..|+|+| ++|++|+.||-|.+||.-+|+....+        --+..+|.|+.|+. +...+++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence            667789999999999 99999999999999999998854433        34567999999999 999999999999999


Q ss_pred             EEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeE
Q psy11351        106 LYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEY  183 (224)
Q Consensus       106 i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
                      +|.++++.++..+. .|...|+++.|+.|+..+++++.|.++++.-+.+|+.++++ +|...++...+.+      +|..
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~------dG~~  362 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD------DGHH  362 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC------CCCe
Confidence            99999999998887 69999999999999999999999999999999999999999 7888888866666      8999


Q ss_pred             EEEcCCCCeEEEEeCCCCCeE
Q psy11351        184 VVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       184 l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++++.||+|++|+.++.++.
T Consensus       363 iisaSsDgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  363 IISASSDGTVKVWHGKTTECL  383 (508)
T ss_pred             EEEecCCccEEEecCcchhhh
Confidence            999999999999999998874

>KOG0289|consensus

Probab=99.96  E-value=1.7e-27  Score=174.65  Aligned_cols=189  Identities=14%  Similarity=0.195  Sum_probs=171.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ...+++|+.|.++.++|...++.+.++ ||...|+.+.|+|+. ..+++++.|..|++|.............|+.+|+.+
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l  309 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL  309 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCccccccccccceee
Confidence            367899999999999999999999888 999999999999998 799999999999999998887788889999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      ..+| .+.+|++++.|+...+.|++++..+.....  ..-.+++.+|+|||..+.+|..|+.+++||+.++..+..| .|
T Consensus       310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh  388 (506)
T KOG0289|consen  310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH  388 (506)
T ss_pred             eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC
Confidence            9999 999999999999999999999977665553  2345899999999999999999999999999999999999 68


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+++..+.|+.      +|.+|+++..|+.|++||++..+.
T Consensus       389 t~~vk~i~FsE------NGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  389 TGPVKAISFSE------NGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             CCceeEEEecc------CceEEEEEecCCeEEEEEehhhcc
Confidence            99988877666      899999999999999999998765

>KOG0278|consensus

Probab=99.96  E-value=2.6e-28  Score=167.72  Aligned_cols=191  Identities=15%  Similarity=0.213  Sum_probs=163.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc--eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD--PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      |++.+.++|++|+.+.-+||+|++..+  +...-+|++.|..+-|.... +.++++..|++|++||.+++..++.+.- .
T Consensus       107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~-~  184 (334)
T KOG0278|consen  107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEF-N  184 (334)
T ss_pred             EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEec-C
Confidence            667888899999999999999998654  34444999999999999887 7899989999999999999999988865 5


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .+++++.+++ +++++.++ ..+.|..||..+...+... .-...|.+..++|+...+++|+.|..++.||..+++.+..
T Consensus       185 s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~-k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  185 SPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSY-KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             CCCcceeecc-CCCEEEEe-cCceeEEeccccccceeec-cCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence            6799999999 88887776 6788999999987655443 3567789999999999999999999999999999998888


Q ss_pred             c--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        160 F--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       160 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +  +|.++|.+     +.|+| +|...++||+||+|++|.+..++.
T Consensus       262 ~nkgh~gpVhc-----VrFSP-dGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  262 YNKGHFGPVHC-----VRFSP-DGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cccCCCCceEE-----EEECC-CCceeeccCCCceEEEEEecCCCc
Confidence            6  68888877     45555 899999999999999999887765

>KOG0310|consensus

Probab=99.96  E-value=4.1e-27  Score=174.67  Aligned_cols=190  Identities=21%  Similarity=0.253  Sum_probs=161.5

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCcCe
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPF   82 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i   82 (224)
                      ..+..+++|+.|+.+++||+.+......+ +|+..|.|.+|+|..+.+++||+.||+|++||.+... .+..+ .|..+|
T Consensus       121 ~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pV  199 (487)
T KOG0310|consen  121 QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPV  199 (487)
T ss_pred             cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCce
Confidence            45678999999999999999998864344 9999999999999887899999999999999999874 44444 688999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~  161 (224)
                      ..+.+-| .+.++++++ ...|++||+.++....... .|...|+|+++..++..|++++-|+.+++||+.+.+.+..+.
T Consensus       200 e~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  200 ESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             eeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence            9999999 888999885 4589999999765554444 499999999999999999999999999999999999999998


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .++++-++++++      +++.++.|-.||.+.+=+....+.
T Consensus       278 ~~~pvLsiavs~------dd~t~viGmsnGlv~~rr~~~k~k  313 (487)
T KOG0310|consen  278 YPGPVLSIAVSP------DDQTVVIGMSNGLVSIRRREVKKK  313 (487)
T ss_pred             cccceeeEEecC------CCceEEEecccceeeeehhhcccC
Confidence            888887755555      789999999999888765444433

>KOG0306|consensus

Probab=99.96  E-value=1e-27  Score=186.22  Aligned_cols=195  Identities=15%  Similarity=0.171  Sum_probs=174.5

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCC-----Cce--------eeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMAS-----GDP--------IDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR   67 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~-----~~~--------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~   67 (224)
                      |+..++++.+++||.|.+|++||..-     +..        .+++..+..|.|+.++|++ .+|+.+--|.++++|-+.
T Consensus       460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflD  538 (888)
T KOG0306|consen  460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLD  538 (888)
T ss_pred             eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEec
Confidence            45678889999999999999999741     111        1233677899999999999 899999999999999999


Q ss_pred             CcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcE
Q psy11351         68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        68 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  147 (224)
                      +-+....+.+|.-||.||..+| ++.+++||+.|.+|++|-+.-+.+-..+.+|.+.|.++.|.|....+++++.|+.++
T Consensus       539 tlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  539 TLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             ceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence            9998889999999999999999 999999999999999999999999889999999999999999999999999999999


Q ss_pred             EEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        148 LYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       148 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      -||-..-+.++.+ +|...+.+.++.+      +|.+++++|.|.+|++|.......
T Consensus       618 qWDg~kFe~iq~L~~H~~ev~cLav~~------~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  618 QWDGEKFEEIQKLDGHHSEVWCLAVSP------NGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             eechhhhhhheeeccchheeeeeEEcC------CCCeEEeccCCceeEeeeccCcce
Confidence            9999998999888 6888888766665      899999999999999999776544

>KOG0267|consensus

Probab=99.96  E-value=4e-29  Score=193.17  Aligned_cols=190  Identities=18%  Similarity=0.279  Sum_probs=172.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      .++.+++|+.|..+-+|.+..-..+..+ +|+.+|.++.|++.. .+|++|+.+|+|++||++..+.++++.+|...+.+
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~s  117 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITS  117 (825)
T ss_pred             cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcce
Confidence            4578999999999999999877666664 999999999999987 79999999999999999999999999999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccC
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHE  163 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~  163 (224)
                      +.|+| -+.+++.|+.|+.+++||++...+...+.+|...+..+.|+|+|++++.++.|..+++||+..|+....| .|.
T Consensus       118 v~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e  196 (825)
T KOG0267|consen  118 VDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE  196 (825)
T ss_pred             eeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence            99999 8899999999999999999987788888889999999999999999999999999999999999999999 488


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.+..+.     |+| ..-++++|+.|+.+++||+++-+.
T Consensus       197 ~~v~sle-----~hp-~e~Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  197 GKVQSLE-----FHP-LEVLLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             ccccccc-----cCc-hhhhhccCCCCceeeeeccceeEE
Confidence            8887755     455 678899999999999999996544

>KOG0318|consensus

Probab=99.96  E-value=1e-26  Score=174.28  Aligned_cols=192  Identities=16%  Similarity=0.232  Sum_probs=161.6

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceee--EE-eccCCeeEEEEcCCCCcEEEEecCC----CEEEEEecCCcccceeec
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPID--FY-LHERPVYGLSVDPSQDAIFASACDD----GRVLLFDTRSREEATELA   76 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~   76 (224)
                      ++.|.|+|+|...|+|||||....+.+.  .+ ...++|.+++|++++ +.+++.++.    |.+.+||  ++..+..+.
T Consensus        68 SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds-~RI~avGEGrerfg~~F~~D--SG~SvGei~  144 (603)
T KOG0318|consen   68 SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDS-KRIAAVGEGRERFGHVFLWD--SGNSVGEIT  144 (603)
T ss_pred             CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCC-cEEEEEecCccceeEEEEec--CCCccceee
Confidence            4668899999999999999997655443  22 578999999999999 566555433    4456666  677788999


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      +|...|+++.|-|..+..+++|+.|+.|.+|+-.-.+-...+..|...|.++.|+|||+++++.+.|+++.+||=.+++.
T Consensus       145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~  224 (603)
T KOG0318|consen  145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK  224 (603)
T ss_pred             ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence            99999999999998889999999999999999765555555667999999999999999999999999999999999999


Q ss_pred             ceecc----cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQFD----HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +..+.    |.+.+..     +.|+| |+..++|++.|.+++|||+.+.++.
T Consensus       225 vg~l~~~~aHkGsIfa-----lsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  225 VGELEDSDAHKGSIFA-----LSWSP-DSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             EEEecCCCCccccEEE-----EEECC-CCceEEEecCCceEEEEEeeccceE
Confidence            99884    5555544     67777 7999999999999999999998764

>KOG0270|consensus

Probab=99.95  E-value=4.5e-27  Score=172.72  Aligned_cols=195  Identities=16%  Similarity=0.225  Sum_probs=163.7

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCc---ee----------------e---EEeccCCeeEEEEcCCCCcEEEEecCCCEE
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGD---PI----------------D---FYLHERPVYGLSVDPSQDAIFASACDDGRV   61 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~---~~----------------~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i   61 (224)
                      +.+|+++|.|..|..|.|||+.-..   +.                +   ..+|+.+|.+++|+..-.+.||+||.|.+|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            4578899999999999999975211   00                1   115999999999998877899999999999


Q ss_pred             EEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCC-eEeee
Q psy11351         62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT-QLLGL  140 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  140 (224)
                      ++||+.++++..++..|.+.|.++.|+|..+.+|++|+.|++|.++|.|..........-.+.|..++|.|... .++++
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence            99999999999999999999999999999999999999999999999996544444445678899999999754 66777


Q ss_pred             ecCCCcEEEECCCC-Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        141 RRRLPPVLYNTRSS-SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       141 ~~d~~v~v~d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..||+|+-+|+|+. +++.++ .|.+.+.+     +++++....+++|++.|+.|++|++.....
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISg-----l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISG-----LSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEEeccCCcce-----EEecCCCCcceeeccccceEEEEeecCCCC
Confidence            88999999999875 888888 68888776     555555678899999999999999876544

>KOG0772|consensus

Probab=99.95  E-value=2.6e-27  Score=177.19  Aligned_cols=198  Identities=14%  Similarity=0.117  Sum_probs=151.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCce----eeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDP----IDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---   71 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---   71 (224)
                      ++++.+|..|++|+.|-+|++||++....    .+.+  .....|+++.|++.+ ..|++.+.....+|+|..-.+.   
T Consensus       173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~  251 (641)
T KOG0772|consen  173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEF  251 (641)
T ss_pred             eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeee
Confidence            46788999999999999999999985432    1222  356789999999999 5555556667999999643221   


Q ss_pred             ------c---eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec------CCCceeEEEEcCCCCe
Q psy11351         72 ------A---TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG------SCESCMSIRFNKAGTQ  136 (224)
Q Consensus        72 ------~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~  136 (224)
                            +   ..-++|...++|.+|+|.+...+++++.||++++||+...+.......      ..-+++.++|+|+|+.
T Consensus       252 ~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~  331 (641)
T KOG0772|consen  252 SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL  331 (641)
T ss_pred             eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch
Confidence                  1   123688899999999998889999999999999999987654443332      3347899999999999


Q ss_pred             EeeeecCCCcEEEECCCC--Ccceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        137 LLGLRRRLPPVLYNTRSS--SPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       137 l~~~~~d~~v~v~d~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +++|+.||.|.+|+..+.  ++...+  .|..   .-.++++.|++ ++++|++-+.|+.+++||++.-+.
T Consensus       332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~---g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP---GQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             hhhcccCCceeeeecCCcccccceEeeeccCC---CCceeEEEecc-ccchhhhccCCCceeeeecccccc
Confidence            999999999999998653  233333  2443   12244466666 899999999999999999998765

>KOG0299|consensus

Probab=99.95  E-value=6.7e-27  Score=172.48  Aligned_cols=198  Identities=16%  Similarity=0.154  Sum_probs=167.6

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ||++.+|+|||+|+.|..|.||+..+.+.++.+ +|.+.|.+++|-... ..+++++.|+++++|++.....+.++.+|+
T Consensus       208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHq  286 (479)
T KOG0299|consen  208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQ  286 (479)
T ss_pred             EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence            578899999999999999999999999999987 999999999998765 789999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      +.|..+.... .++.+.+|+.|+++++|++... ....+.++.+.+-|++|-. ...+++|+.+|.|.+|++.+.+++.+
T Consensus       287 d~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  287 DGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFT  363 (479)
T ss_pred             cceeeechhc-ccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeE
Confidence            9999999887 7788888889999999999543 5566778889999999974 46789999999999999999988887


Q ss_pred             cc--cC---C--cccc-eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        160 FD--HE---G--YYNS-CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       160 ~~--~~---~--~~~~-~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..  |.   .  .++. .-+..++..| ..+++++|+.+|.|++|.+..+-.
T Consensus       364 ~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  364 SRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             eeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCcc
Confidence            62  21   1  1110 0123344455 789999999999999999999833

>KOG0318|consensus

Probab=99.95  E-value=5.2e-26  Score=170.48  Aligned_cols=185  Identities=17%  Similarity=0.221  Sum_probs=161.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec---cCCcCeEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA---VNSGPFHA   84 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~i~~   84 (224)
                      ++++|++|++|.+|+-..-+....+ .|..-|+|+.|+|+| .++++++.||++.+||-.+++.+..+.   +|.+.|.+
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa  240 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA  240 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence            6899999999999998777777666 799999999999999 899999999999999999999988886   89999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC---CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS---CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      ++|+| ++..+++++.|.+++|||+.+.+....+.-.   ......+.|.  ...|++.+.+|+|..++...+.++..+ 
T Consensus       241 lsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~  317 (603)
T KOG0318|consen  241 LSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVIS  317 (603)
T ss_pred             EEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheec
Confidence            99999 9999999999999999999998776666531   2334445565  678899999999999999998888877 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +|...+++++.++      ++.+|++|+.||.|.-|+..++..
T Consensus       318 GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  318 GHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             ccccceeEEEEcC------CCCEEEeeccCceEEEEecCCccc
Confidence            7888888766655      889999999999999999998865

>KOG0300|consensus

Probab=99.95  E-value=1.8e-27  Score=169.01  Aligned_cols=190  Identities=18%  Similarity=0.208  Sum_probs=164.3

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec------CCc--------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT------RSR--------   69 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~------~~~--------   69 (224)
                      ....++.+++.|.+.+||.++++.++..+ +|.+.|++++|++.+ .++++++.|++-+||..      .+.        
T Consensus       158 ~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSs  236 (481)
T KOG0300|consen  158 STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSS  236 (481)
T ss_pred             cCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCc
Confidence            33348899999999999999999999988 999999999999998 89999999999999972      110        


Q ss_pred             --------------------------ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC
Q psy11351         70 --------------------------EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE  123 (224)
Q Consensus        70 --------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  123 (224)
                                                .++..+.+|...|.+..|-. +++.+++++.|.+..+||+++++.+..+.+|..
T Consensus       237 EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~  315 (481)
T KOG0300|consen  237 EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDS  315 (481)
T ss_pred             hhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcch
Confidence                                      03446678999999999999 999999999999999999999999999999999


Q ss_pred             ceeEEEEcCCCCeEeeeecCCCcEEEECCCC-Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        124 SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      ..+.++-+|..+++++++.|.+.++||.+.. ..+..| +|...+.++.|.       .+..+++|+.|.+|++||+++.
T Consensus       316 ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~-------~dd~vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN-------TDDRVVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe-------cCCceeecCCCceEEEeeeccc
Confidence            9999999999999999999999999999854 334455 677777765554       3677999999999999999886


Q ss_pred             Ce
Q psy11351        202 DI  203 (224)
Q Consensus       202 ~~  203 (224)
                      .-
T Consensus       389 Rs  390 (481)
T KOG0300|consen  389 RS  390 (481)
T ss_pred             cC
Confidence            54

>KOG0308|consensus

Probab=99.95  E-value=5.4e-27  Score=179.57  Aligned_cols=191  Identities=17%  Similarity=0.176  Sum_probs=166.5

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCC--ceeeEE-eccCCeeEEEE-cCCCCcEEEEecCCCEEEEEecCCccc--c----
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASG--DPIDFY-LHERPVYGLSV-DPSQDAIFASACDDGRVLLFDTRSREE--A----   72 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~--~----   72 (224)
                      -...++.|+++|.|-+|++|+...+  -++.++ .|...|.|+++ -++. .++++|+-|+.|++||++++..  +    
T Consensus        81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n  159 (735)
T KOG0308|consen   81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFN  159 (735)
T ss_pred             hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhcc
Confidence            3456789999999999999999877  455555 79999999999 5665 7999999999999999997732  2    


Q ss_pred             ----eeec-cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcE
Q psy11351         73 ----TELA-VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        73 ----~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  147 (224)
                          ..+. ++...|++++.++ .+..+++|+..+.+++||.++.+.+..+.+|...|..+..++||..+++++.||+|+
T Consensus       160 ~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr  238 (735)
T KOG0308|consen  160 NVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR  238 (735)
T ss_pred             ccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence                2233 7788999999999 889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        148 LYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       148 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +||+...+++.++ .|...+.++...     | +-..+.+|+.||.|..=|+++.
T Consensus       239 lWdLgqQrCl~T~~vH~e~VWaL~~~-----~-sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  239 LWDLGQQRCLATYIVHKEGVWALQSS-----P-SFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeeccccceeeeEEeccCceEEEeeC-----C-CcceEEecCCCCcEEecccCCc
Confidence            9999999999998 577777665443     3 6788999999999999999884

>KOG0646|consensus

Probab=99.95  E-value=1.5e-26  Score=170.83  Aligned_cols=196  Identities=14%  Similarity=0.107  Sum_probs=163.1

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC---------Ccc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR---------SRE   70 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------~~~   70 (224)
                      ++.++.|.+|+.|+..|.+++|.+.+|..+..+ +|=..|+|+.|+-++ .+|++|+.||.|.+|++-         +.+
T Consensus        87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            356788999999989999999999999999888 899999999999999 899999999999999873         345


Q ss_pred             cceeeccCCcCeEEEEEcCC-CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         71 EATELAVNSGPFHAVMFNPV-EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      +.+.+..|.-+|+++...+. -...+++++.|.++++||+..+..+..+. ....+.+++.+|.+..+++|+.+|.|.+.
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQN  244 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEee
Confidence            77888999999999998872 24689999999999999999986555544 56789999999999999999999999888


Q ss_pred             ECCCCC----------------cceec-ccCC--cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        150 NTRSSS----------------PVAQF-DHEG--YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       150 d~~~~~----------------~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.+..                .+..+ +|.+  .+++++++.      |+.+|++|+.||+|+|||+.+.++.
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------DGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec------CccEEEeeCCCCCEEEEecchHHHH
Confidence            774322                12223 3444  555555444      8999999999999999999988763

>KOG0308|consensus

Probab=99.95  E-value=2.8e-27  Score=181.14  Aligned_cols=192  Identities=16%  Similarity=0.193  Sum_probs=164.7

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCce------eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc--ccceee
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDP------IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR--EEATEL   75 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~   75 (224)
                      +.+++|.+|+.||.|++|+.....-      +..+ .|...|+++....++ +.|++++.|-+|++|+...+  -+..++
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhh
Confidence            3456899999999999999864321      2333 799999999999888 79999999999999999877  477889


Q ss_pred             ccCCcCeEEEEE-cCCCCCeEEEecCCCcEEEEecCCCce--ee--------Eee-cCCCceeEEEEcCCCCeEeeeecC
Q psy11351         76 AVNSGPFHAVMF-NPVEARLVATANSKDGIALYDTRKPKE--VL--------MQY-GSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        76 ~~~~~~i~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~--------~~~-~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      ..|..-|.|++. .+ +..++|+|+-|+.|.+||+.++..  +.        .+. ++..+|++++.++.|..+++|+..
T Consensus       114 r~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte  192 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE  192 (735)
T ss_pred             hcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence            999999999999 55 889999999999999999997622  11        122 578899999999999999999999


Q ss_pred             CCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+++||.++.+.+..+ +|...|..+-+..      +|..++++|.||+|++||+...++.
T Consensus       193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~d------DGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVND------DGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             cceEEeccccccceeeeeccccceEEEEEcC------CCCeEeecCCCceEEeeecccccee
Confidence            99999999999998888 7888887766555      8999999999999999999988875

>KOG1332|consensus

Probab=99.95  E-value=2.9e-26  Score=157.02  Aligned_cols=193  Identities=18%  Similarity=0.215  Sum_probs=152.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCce---eeEE-eccCCeeEEEEcC--CCCcEEEEecCCCEEEEEecCCccc--ceeecc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDP---IDFY-LHERPVYGLSVDP--SQDAIFASACDDGRVLLFDTRSREE--ATELAV   77 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~   77 (224)
                      -|+.|||++.|++|+|+....+..   +..+ +|.++|..++|..  .| .+|++++.||.|.||.-.+++-  ......
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w~k~~e~~~  100 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRWTKAYEHAA  100 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence            378999999999999999976543   3344 9999999999974  56 8999999999999999887753  445578


Q ss_pred             CCcCeEEEEEcCCC-CCeEEEecCCCcEEEEecCCCc---eeeEeecCCCceeEEEEcCC---C-----------CeEee
Q psy11351         78 NSGPFHAVMFNPVE-ARLVATANSKDGIALYDTRKPK---EVLMQYGSCESCMSIRFNKA---G-----------TQLLG  139 (224)
Q Consensus        78 ~~~~i~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~  139 (224)
                      |+..+++++|.|.+ +..|++++.||.|.+.+.+...   .......|.-.|++++|.|.   |           +.|++
T Consensus       101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS  180 (299)
T KOG1332|consen  101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS  180 (299)
T ss_pred             hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence            99999999999943 5688999999999999988651   22334469999999999986   4           46999


Q ss_pred             eecCCCcEEEECCCCCc--ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        140 LRRRLPPVLYNTRSSSP--VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      |+.|+.|+||+..+++-  ...+ .|.+.+..+++.|..=.  ...+|++++.||+|.||..+..
T Consensus       181 gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  181 GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--PKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC--CceeeEEecCCCcEEEEEecCc
Confidence            99999999999987633  2334 68888887555442211  1367999999999999987743

>KOG0289|consensus

Probab=99.95  E-value=3.2e-26  Score=168.06  Aligned_cols=188  Identities=18%  Similarity=0.265  Sum_probs=160.2

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc--CCcC
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV--NSGP   81 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~   81 (224)
                      +....+++++.|..|+||........... .|..+|+.+..+|.| .+|++++.|++..+.|++++..+.....  ..-.
T Consensus       271 ~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~  349 (506)
T KOG0289|consen  271 KDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVE  349 (506)
T ss_pred             cchhheeecCCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccce
Confidence            34456889999999999999876655444 899999999999999 7999999999999999999987655533  2236


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~  161 (224)
                      +++.+|+| ++.+|.+|..||.|++||+.++.....|.+|.++|..++|+.+|-+|++++.|+.|++||+|..+...++.
T Consensus       350 ~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  350 YTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            89999999 99999999999999999999998889999999999999999999999999999999999999998888884


Q ss_pred             cCC--cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        162 HEG--YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       162 ~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ...  .+++     ++|.+ .|.+|+.++.|=+|++++-.+
T Consensus       429 l~~~~~v~s-----~~fD~-SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  429 LDEKKEVNS-----LSFDQ-SGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             cccccccee-----EEEcC-CCCeEEeecceeEEEEEeccc
Confidence            333  3555     44554 799999998887777776443

>KOG0268|consensus

Probab=99.95  E-value=4.6e-27  Score=169.00  Aligned_cols=187  Identities=19%  Similarity=0.319  Sum_probs=148.4

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC-------------------
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR-------------------   67 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------------------   67 (224)
                      ..+++|+.||.|+|||+...+++..+ .|.+.|..+++..   ..+++++.|.+|+.|-+.                   
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~  156 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHH  156 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccc
Confidence            46999999999999999999998888 8999999999986   467888888888887632                   


Q ss_pred             -------------------CcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-----------
Q psy11351         68 -------------------SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-----------  117 (224)
Q Consensus        68 -------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-----------  117 (224)
                                         ...++..+.-....|.++.|+|....+|+++..|+.|.+||+|+..++..           
T Consensus       157 ~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is  236 (433)
T KOG0268|consen  157 RKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC  236 (433)
T ss_pred             cccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence                               12233344334457899999997788899999999999999998654332           


Q ss_pred             -------------------------------eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec--ccCC
Q psy11351        118 -------------------------------QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF--DHEG  164 (224)
Q Consensus       118 -------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~--~~~~  164 (224)
                                                     ..+|.+.|.+++|||.|+-+++|+.|.+|+||..+.+..-..+  ..-.
T Consensus       237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq  316 (433)
T KOG0268|consen  237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ  316 (433)
T ss_pred             cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh
Confidence                                           1236678999999999999999999999999999887665544  2233


Q ss_pred             cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        165 YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++.+     +.|+. |.+++++||.|+.|++|.....+.
T Consensus       317 ~V~~-----Vk~S~-Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  317 HVFC-----VKYSM-DSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             eeeE-----EEEec-cccEEEecCCCcceeeeecchhhh
Confidence            4444     45555 899999999999999998876544

>KOG0302|consensus

Probab=99.95  E-value=1.3e-26  Score=167.33  Aligned_cols=189  Identities=16%  Similarity=0.252  Sum_probs=156.6

Q ss_pred             eEEEEEeCCCcEEEEeCCCC----------------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc
Q psy11351          8 KVLRVIGNDDHVISHDMASG----------------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~----------------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      .++++-+..|.|+||++...                +++..+ +|...-+.++|+|-....|++|.--+.|++|...++.
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence            46778889999999997531                344455 8999999999999654468899888999999998875


Q ss_pred             c---ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce--eeEeecCCCceeEEEEcCCCCeEeeeecCCC
Q psy11351         71 E---ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE--VLMQYGSCESCMSIRFNKAGTQLLGLRRRLP  145 (224)
Q Consensus        71 ~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  145 (224)
                      -   ...+.+|...|..++|+|.....|++|+.||+|+|||+|.+..  ......|.+.|..+.|+....+|++|+.||+
T Consensus       246 W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt  325 (440)
T KOG0302|consen  246 WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT  325 (440)
T ss_pred             eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce
Confidence            3   2446679999999999998889999999999999999998732  2333579999999999998889999999999


Q ss_pred             cEEEECCC---CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        146 PVLYNTRS---SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       146 v~v~d~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      ++|||+++   ++++..| .|..++++     +.|+|.+...|++++.|.+|.+||+.-.
T Consensus       326 ~~iwDLR~~~~~~pVA~fk~Hk~pIts-----ieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  326 LSIWDLRQFKSGQPVATFKYHKAPITS-----IEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             EEEEEhhhccCCCcceeEEeccCCeeE-----EEeccccCceEEeccCCCcEEEEEeecc
Confidence            99999985   5677777 47777665     7777777888999999999999998643

>KOG0270|consensus

Probab=99.95  E-value=8e-26  Score=166.21  Aligned_cols=196  Identities=18%  Similarity=0.205  Sum_probs=159.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      -+.||+||.|.+|++||+.++++...+ .|+..|.+++|+|..+..|++|+.|+++.+.|.|........-...+.|..+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            358999999999999999999999998 5899999999999999999999999999999999543222222235679999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCC-ceeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCcceecccC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKP-KEVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSPVAQFDHE  163 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~  163 (224)
                      +|+|.....+++++.||.|+-+|+|+. +++..+..|.++|.++++++. -.++++++.|+.|++|++....+.....|.
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~  415 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS  415 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence            999988889999999999999999987 677778889999999999986 457888999999999999766554444343


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+..  ..+.++.|...-.++.|+..+.+++||+.+....
T Consensus       416 ~~~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  416 FKLGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccc--eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            33322  2234455545567899999999999999887654

>KOG0647|consensus

Probab=99.95  E-value=5.2e-26  Score=159.99  Aligned_cols=194  Identities=15%  Similarity=0.158  Sum_probs=151.5

Q ss_pred             cceEEEEEeCCCcEEEEeCCC-Cceee--EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMAS-GDPID--FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      ...+++++|+|++||+|+++. +..+-  ...|.++|.+++|+.+| ..+++|+.|+.+++||+.+++ +..+..|..+|
T Consensus        39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pv  116 (347)
T KOG0647|consen   39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPV  116 (347)
T ss_pred             cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC-eeeeeecccce
Confidence            445777999999999999986 34433  33799999999999999 899999999999999999995 67788999999


Q ss_pred             EEEEEcCCCCC--eEEEecCCCcEEEEecCCCceeeEee-----------------------------------------
Q psy11351         83 HAVMFNPVEAR--LVATANSKDGIALYDTRKPKEVLMQY-----------------------------------------  119 (224)
Q Consensus        83 ~~~~~~~~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~-----------------------------------------  119 (224)
                      ..+.|-+ ...  .|+||+.|++|+.||+|....+..+.                                         
T Consensus       117 kt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~S  195 (347)
T KOG0647|consen  117 KTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIES  195 (347)
T ss_pred             eEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence            9999988 555  89999999999999999765433211                                         


Q ss_pred             cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee--cc-cCC--cccc--eeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        120 GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ--FD-HEG--YYNS--CTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~--~~-~~~--~~~~--~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                      ..+-.++|++..++....+.|+.+|.+-+..+..+.+...  |+ |..  .+..  .++..++|+| ....|+|++.||+
T Consensus       196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGT  274 (347)
T ss_pred             cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCce
Confidence            0123467888888877778899999999888877644333  32 331  1222  2456789999 5788999999999


Q ss_pred             EEEEeCCCCCe
Q psy11351        193 LYMWRVPRDDI  203 (224)
Q Consensus       193 v~iw~~~~~~~  203 (224)
                      ..+||-+....
T Consensus       275 f~FWDkdar~k  285 (347)
T KOG0647|consen  275 FSFWDKDARTK  285 (347)
T ss_pred             EEEecchhhhh
Confidence            99999876544

>KOG1407|consensus

Probab=99.95  E-value=9.3e-26  Score=155.86  Aligned_cols=176  Identities=14%  Similarity=0.172  Sum_probs=152.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----------------
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----------------   70 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------   70 (224)
                      ...+++++.|.+|++||...++++......+.-.-+.|+|+| ++++.++.|..|...|.++.+                
T Consensus        77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w  155 (313)
T KOG1407|consen   77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW  155 (313)
T ss_pred             CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeee
Confidence            457999999999999999999999888766666778899998 788888888888887775432                


Q ss_pred             -------------------------cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCce
Q psy11351         71 -------------------------EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESC  125 (224)
Q Consensus        71 -------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v  125 (224)
                                               ++..++.|...+.|+.|+| ++++||+|+.|..+.+||+...-+...+..+.-+|
T Consensus       156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV  234 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPV  234 (313)
T ss_pred             cCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCce
Confidence                                     3456778999999999999 99999999999999999999888888888999999


Q ss_pred             eEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        126 MSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      ..+.|+.+|++|+++++|..|-|=++++|..+.++.+.++...     ++|+| ...+|+-+..|
T Consensus       235 RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~t-----VAWHP-k~~LLAyA~dd  293 (313)
T KOG1407|consen  235 RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFT-----VAWHP-KRPLLAYACDD  293 (313)
T ss_pred             EEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCcee-----EEecC-CCceeeEEecC
Confidence            9999999999999999999999999999999999988887665     67777 57777655443

>KOG0772|consensus

Probab=99.95  E-value=3.3e-26  Score=171.36  Aligned_cols=198  Identities=15%  Similarity=0.210  Sum_probs=151.3

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceee-------------EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPID-------------FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      .+..+..+++.+.....+|+|-...+...             +.+|...++|.+|+|...+.|++++.||+++|||+...
T Consensus       222 ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~  301 (641)
T KOG0772|consen  222 YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT  301 (641)
T ss_pred             ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence            34566777777777899999976544322             22799999999999999889999999999999999865


Q ss_pred             cc-ceeec-----cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee---eEeecCCC--ceeEEEEcCCCCeEe
Q psy11351         70 EE-ATELA-----VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV---LMQYGSCE--SCMSIRFNKAGTQLL  138 (224)
Q Consensus        70 ~~-~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~--~v~~~~~~~~~~~l~  138 (224)
                      +. ...++     +..-+++.++|++ ++.++|+|..||.|.+||.+.....   ..-..|..  .|+|++||++|++|+
T Consensus       302 k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  302 KSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             hhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            53 22332     2334789999999 8999999999999999998654221   11224666  899999999999999


Q ss_pred             eeecCCCcEEEECCCC-CcceecccCCcccceeeeEEEEeCCCCeEEEEcCC------CCeEEEEeCCCCCeE
Q psy11351        139 GLRRRLPPVLYNTRSS-SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD------DFVLYMWRVPRDDIY  204 (224)
Q Consensus       139 ~~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~v~iw~~~~~~~~  204 (224)
                      +-+.|+++++||+++. +++...  .+-.+...-..|||+| +.++|++|+.      .|.+.+||..+-+..
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~--tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v  450 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVR--TGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTV  450 (641)
T ss_pred             hccCCCceeeeeccccccchhhh--cCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeE
Confidence            9999999999999875 444444  2222333344589999 6899999865      578999998877653

>KOG0305|consensus

Probab=99.95  E-value=6.8e-26  Score=173.07  Aligned_cols=202  Identities=15%  Similarity=0.179  Sum_probs=170.6

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-e-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee-eccCC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-L-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE-LAVNS   79 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~   79 (224)
                      .+..|++|++|..+|.|.|||....+.+..+ + |...|-+++|.  + ..+.+|+.|+.|..+|++..+.... +.+|.
T Consensus       225 ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~-~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~  301 (484)
T KOG0305|consen  225 WSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S-SVLSSGSRDGKILNHDVRISQHVVSTLQGHR  301 (484)
T ss_pred             ECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C-ceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence            4677999999999999999999998888777 5 89999999999  3 6899999999999999998876554 88999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC-CCeEeee--ecCCCcEEEECCCCCc
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA-GTQLLGL--RRRLPPVLYNTRSSSP  156 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~--~~d~~v~v~d~~~~~~  156 (224)
                      ..|..+.|++ ++.++|+|+.|+.+.|||....+.+..+..|...|.+++|+|. ...||+|  +.|+.|++||+.+++.
T Consensus       302 qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  302 QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR  380 (484)
T ss_pred             ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence            9999999999 9999999999999999999888888999999999999999996 5577775  4799999999999999


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEE-cCCCCeEEEEeCCCCCeEeeeeeeEe-eCCcee
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVS-GSDDFVLYMWRVPRDDIYVSSDIYVC-RHGSLE  218 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~  218 (224)
                      +..+.-...|..     +.|++...+++.+ |..+..|.||+..+.++.     ..+ ||....
T Consensus       381 i~~vdtgsQVcs-----L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-----~~l~gH~~RV  434 (484)
T KOG0305|consen  381 IDSVDTGSQVCS-----LIWSKKYKELLSTHGYSENQITLWKYPSMKLV-----AELLGHTSRV  434 (484)
T ss_pred             ecccccCCceee-----EEEcCCCCEEEEecCCCCCcEEEEecccccee-----eeecCCccee
Confidence            988865555544     6777754445444 446789999999996664     444 676543

>KOG0973|consensus

Probab=99.95  E-value=4.6e-26  Score=183.05  Aligned_cols=150  Identities=11%  Similarity=0.167  Sum_probs=131.7

Q ss_pred             CCCCcceEEEEEe--CCCcEEEEeCCCC------------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec
Q psy11351          2 ASGDPIKVLRVIG--NDDHVISHDMASG------------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT   66 (224)
Q Consensus         2 a~~~~~~~l~~~~--~dg~i~iwd~~~~------------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~   66 (224)
                      ++.+++..++||+  .||.++||+.+.-            +.+.+. .|.+.|+|+.|+|+| ++||+|++|+.|.||..
T Consensus        20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWER   98 (942)
T ss_pred             EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeee
Confidence            5678899999999  9999999997531            111222 799999999999999 89999999999999998


Q ss_pred             CC----------c--------ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEE
Q psy11351         67 RS----------R--------EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSI  128 (224)
Q Consensus        67 ~~----------~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~  128 (224)
                      ..          +        +....+.+|...|..++|+| ++.++++++.|++|.+|+.++.+.+..+.+|.+.|..+
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv  177 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV  177 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence            72          1        13556789999999999999 99999999999999999999998888899999999999


Q ss_pred             EEcCCCCeEeeeecCCCcEEEECCC
Q psy11351        129 RFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus       129 ~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .|+|-|+||++-+.|++|++|++.+
T Consensus       178 s~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  178 SWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             EECCccCeeeeecCCceEEEEEccc
Confidence            9999999999999999999998654

>KOG0305|consensus

Probab=99.95  E-value=1.1e-25  Score=171.86  Aligned_cols=187  Identities=17%  Similarity=0.273  Sum_probs=164.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc-CCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV-NSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~   84 (224)
                      .+.||.|. ...|.+|+..+++...... +...|+++.|+++| .+|++|..+|.|.|||..+.+.+..+.+ |...|.+
T Consensus       188 ~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~  265 (484)
T KOG0305|consen  188 ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGS  265 (484)
T ss_pred             CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEE
Confidence            44666665 5589999999999776663 38999999999999 8999999999999999999999999988 9999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      ++|+   ...+.+|+.++.|..+|++..+.... +.+|...|..++|++|++++++|+.|+.+.|||....++...+ .|
T Consensus       266 laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H  342 (484)
T KOG0305|consen  266 LAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH  342 (484)
T ss_pred             Eecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence            9996   47899999999999999998876666 6679999999999999999999999999999999888888887 68


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcC--CCCeEEEEeCCCCCe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGS--DDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~v~iw~~~~~~~  203 (224)
                      .+.|..     ++|+|-...+||+|+  .|+.|++||..+++.
T Consensus       343 ~aAVKA-----~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  343 TAAVKA-----LAWCPWQSGLLATGGGSADRCIKFWNTNTGAR  380 (484)
T ss_pred             ceeeeE-----eeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence            777665     667776788899875  699999999999876

>KOG1273|consensus

Probab=99.94  E-value=1.2e-25  Score=159.34  Aligned_cols=198  Identities=19%  Similarity=0.260  Sum_probs=161.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      +++.|.+||+|..||.|.|||+.+...-+.+ +|..+|++++|+++| ..|++++.|..|.+||+..|.+++.++- .++
T Consensus        31 Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf-~sp  108 (405)
T KOG1273|consen   31 FSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSP  108 (405)
T ss_pred             eccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEc-cCc
Confidence            5678999999999999999999998877777 899999999999999 8999999999999999998875543321 111


Q ss_pred             eE-----------------------------------------------EEEEcCCCCCeEEEecCCCcEEEEecCCCce
Q psy11351         82 FH-----------------------------------------------AVMFNPVEARLVATANSKDGIALYDTRKPKE  114 (224)
Q Consensus        82 i~-----------------------------------------------~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  114 (224)
                      |.                                               +..|.+ .++++++|...|.+.+||..+.++
T Consensus       109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~  187 (405)
T KOG1273|consen  109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLEC  187 (405)
T ss_pred             cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchhee
Confidence            11                                               122555 678999999999999999999887


Q ss_pred             eeEeecCC-CceeEEEEcCCCCeEeeeecCCCcEEEECCC-------CCcceecccCCcccceeeeEEEEeCCCCeEEEE
Q psy11351        115 VLMQYGSC-ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS-------SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       115 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  186 (224)
                      +..+.-.. ..|..+.++..|++|+..+.|..|+.|+++.       +++....+...-++...|..|||+. ++.|+++
T Consensus       188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a  266 (405)
T KOG1273|consen  188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCA  266 (405)
T ss_pred             eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEe
Confidence            77766544 7899999999999999999999999998762       2222222345678888999999999 7888877


Q ss_pred             cC-CCCeEEEEeCCCCCeE
Q psy11351        187 GS-DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       187 ~~-~d~~v~iw~~~~~~~~  204 (224)
                      ++ ....++||....|...
T Consensus       267 ~s~~aHaLYIWE~~~GsLV  285 (405)
T KOG1273|consen  267 GSARAHALYIWEKSIGSLV  285 (405)
T ss_pred             ccccceeEEEEecCCccee
Confidence            76 4578999999998776

>KOG0293|consensus

Probab=99.94  E-value=1.5e-26  Score=168.92  Aligned_cols=193  Identities=17%  Similarity=0.217  Sum_probs=155.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---------   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------   70 (224)
                      +.+++.++|++|+.|..+++||+.+|+....++  +...+.+++|.||+ ..+++|+.|+++..||+....         
T Consensus       276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~  354 (519)
T KOG0293|consen  276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRD  354 (519)
T ss_pred             EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccccccc
Confidence            346778899999999999999999999999884  45899999999999 899999999999999975321         


Q ss_pred             -cce-------------------------------eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe
Q psy11351         71 -EAT-------------------------------ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ  118 (224)
Q Consensus        71 -~~~-------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  118 (224)
                       ++.                               .+-..+.+|++++.+. +++++++.-.+..+++||++..+.+..+
T Consensus       355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHh
Confidence             000                               0112235788888888 8888888888889999999977777777


Q ss_pred             ecCCCc--eeEEEEcC-CCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEE
Q psy11351        119 YGSCES--CMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY  194 (224)
Q Consensus       119 ~~~~~~--v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~  194 (224)
                      .+|+..  +-.-+|-- +..++++|++|+.|+||+..+++++..+ +|...+++     ++|+|.+..++|+++.||+|+
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc-----VswNP~~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC-----VSWNPADPEMFASASDDGTIR  508 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE-----EecCCCCHHHhhccCCCCeEE
Confidence            776653  33345543 4579999999999999999999999999 67776665     778888889999999999999


Q ss_pred             EEeCCCC
Q psy11351        195 MWRVPRD  201 (224)
Q Consensus       195 iw~~~~~  201 (224)
                      ||.....
T Consensus       509 IWg~~~~  515 (519)
T KOG0293|consen  509 IWGPSDN  515 (519)
T ss_pred             EecCCcc
Confidence            9987643

>KOG1036|consensus

Probab=99.94  E-value=2.7e-25  Score=156.72  Aligned_cols=193  Identities=13%  Similarity=0.164  Sum_probs=151.6

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      ++..+.|+++++||++++||....+....+.|..++.+++|.++  ..+++|+.||.|+.+|+++++ ...+..|..+|.
T Consensus        22 ~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~   98 (323)
T KOG1036|consen   22 SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIR   98 (323)
T ss_pred             cCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCc-ceeeccCCCceE
Confidence            35567788888999999999999988888899999999999985  589999999999999999876 456678999999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee----
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ----  159 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~----  159 (224)
                      |+.+.+ ....+++|++|++|++||.|.......+ .....|.++..  .|+.|++|+.+..+.+||+++......    
T Consensus        99 ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS  174 (323)
T KOG1036|consen   99 CIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRES  174 (323)
T ss_pred             EEEeec-cCCeEEEcccCccEEEEecccccccccc-ccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccc
Confidence            999999 7889999999999999999974333333 34457777765  468899999999999999986422110    


Q ss_pred             -----------cc----------------------------------cCCc----ccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        160 -----------FD----------------------------------HEGY----YNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       160 -----------~~----------------------------------~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                                 +.                                  |...    -.-..+..++|+|. ...|+||+.|
T Consensus       175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsD  253 (323)
T KOG1036|consen  175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSD  253 (323)
T ss_pred             cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCC
Confidence                       00                                  0000    00011446788884 7889999999


Q ss_pred             CeEEEEeCCCCCeE
Q psy11351        191 FVLYMWRVPRDDIY  204 (224)
Q Consensus       191 ~~v~iw~~~~~~~~  204 (224)
                      |.|.+||+.+.+..
T Consensus       254 G~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  254 GIVNIWDLFNRKRL  267 (323)
T ss_pred             ceEEEccCcchhhh
Confidence            99999999988774

>KOG0296|consensus

Probab=99.94  E-value=3e-25  Score=159.62  Aligned_cols=165  Identities=17%  Similarity=0.252  Sum_probs=149.3

Q ss_pred             EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         32 FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                      ...|+..|++++.+|+. +++++|+.|..-++|++.++.....+.+|+..|+++.|+. ++.+||||+-+|.|+||+..+
T Consensus        60 F~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             hhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEccc
Confidence            33899999999999976 8999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        112 PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      +.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+ +|..++++     -+|.| +|+.++++..|
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~-----G~f~p-dGKr~~tgy~d  211 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC-----GEFIP-DGKRILTGYDD  211 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc-----ccccC-CCceEEEEecC
Confidence            9887777766777888999999999999999999999999987777777 67777665     45555 79999999999


Q ss_pred             CeEEEEeCCCCCeE
Q psy11351        191 FVLYMWRVPRDDIY  204 (224)
Q Consensus       191 ~~v~iw~~~~~~~~  204 (224)
                      |+|++|+..++++.
T Consensus       212 gti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  212 GTIIVWNPKTGQPL  225 (399)
T ss_pred             ceEEEEecCCCcee
Confidence            99999999999875

>KOG0299|consensus

Probab=99.94  E-value=6.8e-26  Score=167.22  Aligned_cols=195  Identities=17%  Similarity=0.210  Sum_probs=167.7

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceee------------------E-EeccCCeeEEEEcCCCCcEEEEecCCCEE
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPID------------------F-YLHERPVYGLSVDPSQDAIFASACDDGRV   61 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i   61 (224)
                      ||.++.+++.++++.||+|.=|++.+++..+                  . ..|...+.+++.++++ ++|++|+.|..|
T Consensus       148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v  226 (479)
T KOG0299|consen  148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHV  226 (479)
T ss_pred             EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceE
Confidence            4567788999999999999999998775320                  1 1577899999999999 899999999999


Q ss_pred             EEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      .||+.++.+.++.+.+|.+.|.+++|-. +...+++++.|+.+++|++.....+..+++|.+.|.++.-..-++.+.+|+
T Consensus       227 ~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg  305 (479)
T KOG0299|consen  227 QIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG  305 (479)
T ss_pred             EEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc
Confidence            9999999999999999999999999998 888899999999999999998888888999999999999888888888899


Q ss_pred             cCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        142 RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|+++++|++..-..+.-..+.+.+.++++.       +...+++|+.||.|.+|++.+.++.
T Consensus       306 rDrT~rlwKi~eesqlifrg~~~sidcv~~I-------n~~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  306 RDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-------NDEHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             ccceeEEEeccccceeeeeCCCCCeeeEEEe-------cccceeeccCCceEEEeeecccCce
Confidence            9999999999544333333566666654443       5788999999999999999998875

>KOG0278|consensus

Probab=99.94  E-value=1.1e-26  Score=159.73  Aligned_cols=207  Identities=16%  Similarity=0.229  Sum_probs=173.5

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i   82 (224)
                      +++...-|+++.|-+.++||.-+|..+..+.|..-|..++|+.+. +.|++|+.++.++|||++..+ +...+.+|.+.|
T Consensus        68 ~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~I  146 (334)
T KOG0278|consen   68 NKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI  146 (334)
T ss_pred             CchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence            445556788999999999999999999999999999999999998 899999999999999998765 567889999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceeccc
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDH  162 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~  162 (224)
                      ..+-|.. ..+.+++++.|+.|++||.+++..+..+. ...+|+++.++++|++|.++.. +.|..||..+-.+++.+..
T Consensus       147 r~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  147 RTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             eeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecC-ceeEEeccccccceeeccC
Confidence            9999998 77788888999999999999997766554 5688999999999999887754 5599999999999988877


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEeeCC--ceeEEEee
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHG--SLEVSILP  223 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~p  223 (224)
                      +..+.+..+     +| +...+++|++|..++.||..+++..-.   ...||.  ...+.+.|
T Consensus       224 P~nV~SASL-----~P-~k~~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  224 PCNVESASL-----HP-KKEFFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSP  277 (334)
T ss_pred             ccccccccc-----cC-CCceEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECC
Confidence            777766444     44 679999999999999999999988622   112343  44566655

>KOG0269|consensus

Probab=99.94  E-value=5.8e-26  Score=176.93  Aligned_cols=194  Identities=13%  Similarity=0.211  Sum_probs=157.1

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCcee----eEEe----ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC---ccc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPI----DFYL----HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS---REE   71 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~   71 (224)
                      .+++...++.++. ..++||.++.....    ..++    -...+.++.|.....++||+++..|.|.+||+..   .+.
T Consensus        47 ~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~  125 (839)
T KOG0269|consen   47 VNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKL  125 (839)
T ss_pred             ecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchh
Confidence            3445555666654 36888887654321    1111    1234667888865568999999999999999987   556


Q ss_pred             ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEE
Q psy11351         72 ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        72 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d  150 (224)
                      +..+..|+..+++++|++....+|++|+.||.|++||+|..+....+.+....|..|+|+|. +.+++++...|.+.+||
T Consensus       126 l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD  205 (839)
T KOG0269|consen  126 LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD  205 (839)
T ss_pred             hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence            67889999999999999989999999999999999999998888888888999999999995 77899999999999999


Q ss_pred             CCCCCc-ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        151 TRSSSP-VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       151 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++.... ...+ .|.+.+.+     +.|+| ++.+||||+.|+.|+|||+.+++.
T Consensus       206 lRqp~r~~~k~~AH~GpV~c-----~nwhP-nr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  206 LRQPDRCEKKLTAHNGPVLC-----LNWHP-NREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             ccCchhHHHHhhcccCceEE-----EeecC-CCceeeecCCCccEEEEeccCCCc
Confidence            997644 4444 68888776     66777 899999999999999999997655

>KOG0306|consensus

Probab=99.94  E-value=9.1e-25  Score=170.00  Aligned_cols=192  Identities=14%  Similarity=0.180  Sum_probs=163.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-----cccceee---
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-----REEATEL---   75 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~---   75 (224)
                      +.++++++|...|.+.++|+.+...+.+. .|++.+.+++.+|++ ..+++|+.|.+|++||..-     +...+.+   
T Consensus       422 pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~  500 (888)
T KOG0306|consen  422 PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK  500 (888)
T ss_pred             CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence            34567888888888888888887777766 799999999999999 8999999999999999742     1111111   


Q ss_pred             ----ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         76 ----AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        76 ----~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                          -.-+..|.|+.++| ++.+++.+--|.+|++|-+.+.+-...+++|.-+|.||..+||++.+++|+.|..|++|-+
T Consensus       501 ~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL  579 (888)
T KOG0306|consen  501 HTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL  579 (888)
T ss_pred             cceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence                12346799999999 9999999999999999999999888899999999999999999999999999999999999


Q ss_pred             CCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .-|.+-+.+ .|...+.++.|.|      ...++.+++.|+.|+-||-..-+..
T Consensus       580 dFGDCHKS~fAHdDSvm~V~F~P------~~~~FFt~gKD~kvKqWDg~kFe~i  627 (888)
T KOG0306|consen  580 DFGDCHKSFFAHDDSVMSVQFLP------KTHLFFTCGKDGKVKQWDGEKFEEI  627 (888)
T ss_pred             ccchhhhhhhcccCceeEEEEcc------cceeEEEecCcceEEeechhhhhhh
Confidence            999998888 8888877755555      7899999999999999997766554

>KOG0640|consensus

Probab=99.93  E-value=2.7e-25  Score=157.33  Aligned_cols=213  Identities=17%  Similarity=0.223  Sum_probs=165.7

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCcee---eEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---c
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPI---DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---A   76 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~   76 (224)
                      +.+...+|++|+.|++|+++|+..-...   +.+....+|.++.|+|.| .+|+.|.+-.++++||+++-++...-   .
T Consensus       180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCccc
Confidence            3455678999999999999999765433   334567899999999999 79999999999999999998865433   5


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-C-CCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-S-CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .|.+.|+++.+++ .+++.++++.||.|++||--+++++..+.. | ...|.+..|..+|+|+++.+.|..+++|.+.++
T Consensus       259 qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  259 QHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             ccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            6888999999999 999999999999999999888888777663 4 457999999999999999999999999999999


Q ss_pred             CcceecccCCccccee-eeEEEEeCCCCeEEEEcCC-CCeEEEEeCCCCCeEeeeeeeEeeCCceeEEE
Q psy11351        155 SPVAQFDHEGYYNSCT-MKSCCFAGTQDEYVVSGSD-DFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSI  221 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  221 (224)
                      +.+.++...+...... -....|+. .+++++.-.+ .+.+.-||.+++...   ....+||++..-.|
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~---~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRV---ALLSLGHNGAVRWI  402 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhh---hhcccCCCCCceEE
Confidence            9999883221111111 12244444 5677666543 468999999998764   22344777665444

>KOG0641|consensus

Probab=99.93  E-value=1.6e-23  Score=142.66  Aligned_cols=193  Identities=15%  Similarity=0.195  Sum_probs=147.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC------------ceee----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEe
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG------------DPID----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFD   65 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd   65 (224)
                      |+.++|.+.+.|++..+.||.....-            .+..    ...|.+.|+|.+|+|+| +++++|+.|++|++..
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~  117 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLP  117 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEe
Confidence            56678999999999999998864321            1111    12589999999999999 8999999999999876


Q ss_pred             cCCccc-----ceeeccCCcCeEEEEEcCC---------------------------------------------CCCeE
Q psy11351         66 TRSREE-----ATELAVNSGPFHAVMFNPV---------------------------------------------EARLV   95 (224)
Q Consensus        66 ~~~~~~-----~~~~~~~~~~i~~~~~~~~---------------------------------------------~~~~l   95 (224)
                      ++...+     -..+.-|.+.|..++|-.+                                             ++-.+
T Consensus       118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~  197 (350)
T KOG0641|consen  118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMF  197 (350)
T ss_pred             cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEE
Confidence            643221     1122233333333333210                                             44578


Q ss_pred             EEecCCCcEEEEecCCCceeeEeec-------CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCccc
Q psy11351         96 ATANSKDGIALYDTRKPKEVLMQYG-------SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYN  167 (224)
Q Consensus        96 ~~~~~dg~v~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~  167 (224)
                      ++|+.|.+|++||++-..++..+..       ..+.|.+++..|.|++|++|-.|....+||++.+++++.+ .|...+.
T Consensus       198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir  277 (350)
T KOG0641|consen  198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR  277 (350)
T ss_pred             EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee
Confidence            9999999999999998776665542       3467899999999999999999999999999999999999 6777766


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +     +.|+| ...|+++++.|..|++=|++..
T Consensus       278 ~-----vrfsp-~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  278 C-----VRFSP-GAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             E-----EEeCC-CceEEEEecccceEEEeecccc
Confidence            6     55566 7899999999999999998754

>KOG0973|consensus

Probab=99.93  E-value=1.7e-24  Score=174.09  Aligned_cols=195  Identities=13%  Similarity=0.154  Sum_probs=161.7

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCC----------C--------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEE
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMAS----------G--------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLL   63 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~----------~--------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i   63 (224)
                      .+.+|++||+|++|+.|.||....          |        +.+..+ +|+..|.+++|+|++ .+|++++.|++|.|
T Consensus        77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsVii  155 (942)
T KOG0973|consen   77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVII  155 (942)
T ss_pred             ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEE
Confidence            468899999999999999999872          0        133344 899999999999998 89999999999999


Q ss_pred             EecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee----------------------------
Q psy11351         64 FDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV----------------------------  115 (224)
Q Consensus        64 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----------------------------  115 (224)
                      ||.++.+.+..+++|.+.|..+.|.| -+++||+-+.|++|++|++.+....                            
T Consensus       156 wn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l  234 (942)
T KOG0973|consen  156 WNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL  234 (942)
T ss_pred             EccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence            99999999999999999999999999 9999999999999999996542111                            


Q ss_pred             ------------------------eEeecCCCceeEEEEcCC-----CC------------eEeeeecCCCcEEEECCCC
Q psy11351        116 ------------------------LMQYGSCESCMSIRFNKA-----GT------------QLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus       116 ------------------------~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~d~~v~v~d~~~~  154 (224)
                                              ..+.+|.+++.+++|+|.     .+            .+++|+.|++|.||.....
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~  314 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP  314 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence                                    113468899999999973     11            5788999999999999888


Q ss_pred             CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +++....+   +....+..++|+| +|..|+++|.||+|.++.+...+.
T Consensus       315 RPl~vi~~---lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  315 RPLFVIHN---LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             Cchhhhhh---hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence            88877621   1222355588888 799999999999999999987654

>KOG4283|consensus

Probab=99.93  E-value=1.2e-24  Score=152.98  Aligned_cols=191  Identities=16%  Similarity=0.199  Sum_probs=154.7

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCc------------eee----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGD------------PID----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~------------~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      .|+++++|+.||.|.+||++...            ++.    .-+|...|.++.|-|.+.-.|.+++.|.++++||.++.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            47899999999999999997543            110    11588899999999977679999999999999999998


Q ss_pred             ccceeeccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCe-EeeeecCCCc
Q psy11351         70 EEATELAVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQ-LLGLRRRLPP  146 (224)
Q Consensus        70 ~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v  146 (224)
                      +....++ .++.|.+-+++|..  ..++|+|..+-.|++-|+.++...+.+.+|.+.|.++.|+|...+ |++|+.||.|
T Consensus       135 Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i  213 (397)
T KOG4283|consen  135 QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI  213 (397)
T ss_pred             eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence            8766664 36678888888843  358889999999999999999999999999999999999998775 6778999999


Q ss_pred             EEEECCCC-Ccceec---------------ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        147 VLYNTRSS-SPVAQF---------------DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       147 ~v~d~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++||++.. .+...+               .|.+.++.     ++|+. ++.++++.+.|.++++|+..+|+.
T Consensus       214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng-----la~tS-d~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG-----LAWTS-DARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             EEEEeecccceeEEeecccCccCccccccccccceeee-----eeecc-cchhhhhccCccceEEeecccCcc
Confidence            99999753 222111               24444444     55555 799999999999999999998865

>KOG1274|consensus

Probab=99.93  E-value=5e-24  Score=168.95  Aligned_cols=191  Identities=14%  Similarity=0.222  Sum_probs=165.1

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      ....+|++|+.+++|.+|....++.-..+ ..+-++++++|+-+| ++++.|+.|-.|++-++.+......+++|..+|.
T Consensus        64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCcee
Confidence            44568999999999999999998877555 678899999999998 8999999999999999999988999999999999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--------CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--------SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      ++.|+| .+++||+.+.||.|++||+.++.....+.+        ....+..++|+|+|..+++.+.|+.|++|+..+++
T Consensus       143 ~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  143 QLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             eeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence            999999 999999999999999999998765544432        24567789999999889999999999999999998


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ....+.....  +..+..+.|+| +|.|||+++.||.|.|||.++
T Consensus       222 ~~f~Lr~~~~--ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  222 LQFKLRDKLS--SSKFSDLQWSP-NGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eheeeccccc--ccceEEEEEcC-CCcEEeeeccCCcEEEEeccc
Confidence            8888732221  11266789999 699999999999999999995

>KOG0647|consensus

Probab=99.93  E-value=3.4e-24  Score=150.93  Aligned_cols=169  Identities=14%  Similarity=0.162  Sum_probs=141.3

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-cc-ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-EE-ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                      .-+..|.+++|+|....++++++.|++|++|+++.. .. -+....|.+++.+++|+. ++..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence            356789999999966578889999999999999863 32 244567899999999999 889999999999999999999


Q ss_pred             CceeeEeecCCCceeEEEEcCCCC--eEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        112 PKEVLMQYGSCESCMSIRFNKAGT--QLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      + .+..+..|.++|..+.|-+...  .|++|+-|.+|+.||++...++.++..+++++++..        ...+++.+..
T Consensus       104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--------~~pm~vVata  174 (347)
T KOG0647|consen  104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--------LYPMAVVATA  174 (347)
T ss_pred             C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--------cCceeEEEec
Confidence            8 5667778999999999987655  899999999999999999999999988888877554        4567888889


Q ss_pred             CCeEEEEeCCCCCeEeeeeeeEe
Q psy11351        190 DFVLYMWRVPRDDIYVSSDIYVC  212 (224)
Q Consensus       190 d~~v~iw~~~~~~~~~~~~~~~~  212 (224)
                      ++.|.+|+++++.....+...+|
T Consensus       175 ~r~i~vynL~n~~te~k~~~SpL  197 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIESPL  197 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhcCcc
Confidence            99999999987755333333333

>KOG0288|consensus

Probab=99.93  E-value=1.2e-24  Score=158.77  Aligned_cols=180  Identities=9%  Similarity=0.096  Sum_probs=154.1

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcC
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP   89 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~   89 (224)
                      +++|+.|.+|++||+....+.+..-..+.+.+|..++   ..+++|..|++|++||+++..+......+. .|+++..++
T Consensus       276 vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~  351 (459)
T KOG0288|consen  276 VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM  351 (459)
T ss_pred             eeeccccchhhhhhhhhhheeccccccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc
Confidence            8999999999999999999988886677788888773   689999999999999999999888887755 899999999


Q ss_pred             CCCCeEEEecCCCcEEEEecCCCceeeEeec----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCc
Q psy11351         90 VEARLVATANSKDGIALYDTRKPKEVLMQYG----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGY  165 (224)
Q Consensus        90 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~  165 (224)
                       ++..+.+++.|..+.+.|+++.+....+..    .....+.+.|||++.|+++|+.||.|+||++.+++....+.....
T Consensus       352 -~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s  430 (459)
T KOG0288|consen  352 -DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS  430 (459)
T ss_pred             -CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC
Confidence             888888889999999999999877666553    334588999999999999999999999999999998888732221


Q ss_pred             ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        166 YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      -.  .+.++.|+| .|..|++++.++.+.+|.
T Consensus       431 ~~--aI~s~~W~~-sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  431 NA--AITSLSWNP-SGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             Cc--ceEEEEEcC-CCchhhcccCCcceEecC
Confidence            11  455688888 699999999999999993

>KOG0300|consensus

Probab=99.93  E-value=2.2e-24  Score=153.35  Aligned_cols=194  Identities=16%  Similarity=0.184  Sum_probs=164.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeC------CCC----------------------------------ceeeEE-eccCCee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDM------ASG----------------------------------DPIDFY-LHERPVY   40 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~------~~~----------------------------------~~~~~~-~~~~~v~   40 (224)
                      ++.+.+.++++++.|++..||..      ...                                  .++..+ +|.+.|.
T Consensus       197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~  276 (481)
T KOG0300|consen  197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS  276 (481)
T ss_pred             EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence            45677889999999999999972      110                                  012223 7999999


Q ss_pred             EEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC-ceeeEee
Q psy11351         41 GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP-KEVLMQY  119 (224)
Q Consensus        41 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~  119 (224)
                      +..|...+ +.+++++.|.+..+||+++++.+..+.+|....+.++-+| ..+++++++.|.+.++||.+.. ..+..|.
T Consensus       277 a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  277 ACDWLAGG-QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             ehhhhcCc-ceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeec
Confidence            99999988 8999999999999999999999999999999999999999 9999999999999999999954 3345677


Q ss_pred             cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC-CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        120 GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      +|...|+++.|..+ ..+++|+.|.+|++||+++. .++.++.....++.++++.      .+..++.--.++.|++||+
T Consensus       355 GHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~------g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSK------GHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             ccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeec------CCceEEeccCCceEEEEec
Confidence            89999999999875 56789999999999999876 5667777788888887766      6778899889999999999


Q ss_pred             CCCCeE
Q psy11351        199 PRDDIY  204 (224)
Q Consensus       199 ~~~~~~  204 (224)
                      +.....
T Consensus       428 nG~Rla  433 (481)
T KOG0300|consen  428 NGNRLA  433 (481)
T ss_pred             CCCccc
Confidence            887664

>KOG0301|consensus

Probab=99.92  E-value=5.6e-24  Score=164.23  Aligned_cols=176  Identities=12%  Similarity=0.129  Sum_probs=147.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      .+++||+|.++++|-..  ++.... +|+..|.++...|++  .++||+.|++|++|.-  ++.++++.+|.+.|..+++
T Consensus       114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            38999999999999875  333334 999999999999975  8999999999999975  7788999999999999999


Q ss_pred             cCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCC-cc
Q psy11351         88 NPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEG-YY  166 (224)
Q Consensus        88 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~-~~  166 (224)
                      -+ + ..|++++.||.|++|++ +++.+....+|...+++++..+++..++++++|+++++|+..  ++.+.+.+++ .+
T Consensus       188 l~-~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi  262 (745)
T KOG0301|consen  188 LD-D-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI  262 (745)
T ss_pred             ec-C-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce
Confidence            88 3 56888999999999999 677899999999999999988889999999999999999976  6667776655 44


Q ss_pred             cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        167 NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .++.     +-+ +++ +++|+.||.|+||......
T Consensus       263 Wsa~-----~L~-NgD-Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  263 WSAK-----VLL-NGD-IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             EEEE-----Eee-CCC-EEEeccCceEEEEEecccc
Confidence            4333     222 444 6778889999999887543

>KOG0267|consensus

Probab=99.92  E-value=1.3e-25  Score=173.92  Aligned_cols=179  Identities=13%  Similarity=0.156  Sum_probs=156.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      -...+|++|+.+|+|++||++.++.++.+ +|...+..+.|+|.+ .++++|+.|+.+++||++...+.+.+.+|...+.
T Consensus        80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~  158 (825)
T KOG0267|consen   80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD  158 (825)
T ss_pred             cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeE
Confidence            34457899999999999999999888777 999999999999999 7999999999999999999899999999999999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-c
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-H  162 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~  162 (224)
                      .+.|+| ++++++.++.|..++|||+..++....+..|++.+..+.|+|..-.++.|+.|+++++||+++-+.+...+ .
T Consensus       159 ~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~  237 (825)
T KOG0267|consen  159 VLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE  237 (825)
T ss_pred             EEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc
Confidence            999999 99999999999999999999998888888999999999999999999999999999999999876665552 2


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                      ...+.+     ..|+| ++..+.+|-.+.
T Consensus       238 ~~~v~~-----~~fn~-~~~~~~~G~q~s  260 (825)
T KOG0267|consen  238 TDGVRS-----LAFNP-DGKIVLSGEQIS  260 (825)
T ss_pred             cCCcee-----eeecC-CceeeecCchhh
Confidence            333333     55666 688887776543

>KOG0321|consensus

Probab=99.92  E-value=2.1e-23  Score=159.87  Aligned_cols=209  Identities=21%  Similarity=0.254  Sum_probs=152.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeE--E-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-------------
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDF--Y-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-------------   70 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------   70 (224)
                      ...|++++.|.++++||+++.+++..  + +|.+.|.+++|.|.++..|++|+.||.|.|||++-..             
T Consensus       112 e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~  191 (720)
T KOG0321|consen  112 ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG  191 (720)
T ss_pred             ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence            34789999999999999999888765  3 9999999999999998999999999999999986432             


Q ss_pred             -------c-------ceeeccCCcCeEE---EEEcCCCCCeEEEecC-CCcEEEEecCCCceeeEee--------cC---
Q psy11351         71 -------E-------ATELAVNSGPFHA---VMFNPVEARLVATANS-KDGIALYDTRKPKEVLMQY--------GS---  121 (224)
Q Consensus        71 -------~-------~~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~--------~~---  121 (224)
                             +       +...+.+...|.+   +.+.. +...||+++. |+.|++||+++........        -+   
T Consensus       192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr  270 (720)
T KOG0321|consen  192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR  270 (720)
T ss_pred             cccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence                   0       1111233334444   44445 6788888877 9999999999765433322        12   


Q ss_pred             CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        122 CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .-.+.++..+..|.+|++.+.|+.|++|++.+...--...+.+..+.--...-+.+| ++.++++|+.|...++|.+.+.
T Consensus       271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCc
Confidence            335677888888999999999999999999865433333333433333344456667 7999999999999999999987


Q ss_pred             CeEeeeeeeEe-eCCceeEEE
Q psy11351        202 DIYVSSDIYVC-RHGSLEVSI  221 (224)
Q Consensus       202 ~~~~~~~~~~~-~~~~~~~~~  221 (224)
                      +..    ...+ ||.......
T Consensus       350 e~~----~~~l~Ght~eVt~V  366 (720)
T KOG0321|consen  350 EAP----PALLLGHTREVTTV  366 (720)
T ss_pred             cCC----hhhhhCcceEEEEE
Confidence            663    1223 676554433

>KOG0639|consensus

Probab=99.92  E-value=4.3e-24  Score=159.89  Aligned_cols=188  Identities=16%  Similarity=0.207  Sum_probs=165.3

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +|.+.+.+.++++..||.|.|||+.+...++.+ +|...+.||.++++| ..|-+|+-|.+|+.||+++++.+.... ..
T Consensus       515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhd-F~  592 (705)
T KOG0639|consen  515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-FS  592 (705)
T ss_pred             hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhh-hh
Confidence            366778889999999999999999999999988 999999999999999 899999999999999999988655442 25


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      +.|.++..+| .+.+++.|-.++.+.+-..... ....+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+..
T Consensus       593 SQIfSLg~cP-~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  593 SQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             hhheecccCC-CccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence            6899999999 8999999999999988877655 3455666999999999999999999999999999999999988888


Q ss_pred             cccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        160 FDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      .+....|.++.++.      ++++++||+.|....+|.+
T Consensus       671 skE~SsVlsCDIS~------ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 SKESSSVLSCDISF------DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccccCcceeeeecc------CceEEEecCCCcceEEEEE
Confidence            87777777766665      8999999999999888875

>KOG0302|consensus

Probab=99.92  E-value=1.1e-23  Score=152.37  Aligned_cols=183  Identities=17%  Similarity=0.212  Sum_probs=142.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCceee----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceeeccCCcCe
Q psy11351          9 VLRVIGNDDHVISHDMASGDPID----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATELAVNSGPF   82 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i   82 (224)
                      .|++|..-+.|++|...++....    +.+|+..|.+++|+|.....|++|+-||+|+|||+|.+..  -...+.|.+.|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            47888888899999998876442    3389999999999999888999999999999999998842  22337899999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCC---ceeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCc--
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKP---KEVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSP--  156 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~--  156 (224)
                      +.+.|+. ...+|++|+.||.++|||+|+.   +++..+..|+.+|+++.|+|. ...+++++.|..|.+||+.--.-  
T Consensus       306 NVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e  384 (440)
T KOG0302|consen  306 NVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE  384 (440)
T ss_pred             eeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence            9999999 6669999999999999999964   445677789999999999996 45778888999999999853211  


Q ss_pred             ---------------ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        157 ---------------VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       157 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                                     ...|-|.+..   .+..+.|++....++++.+.||. .||
T Consensus       385 e~~~~a~~~L~dlPpQLLFVHqGQk---e~KevhWH~QiPG~lvsTa~dGf-nVf  435 (440)
T KOG0302|consen  385 EIDQEAAEGLQDLPPQLLFVHQGQK---EVKEVHWHRQIPGLLVSTAIDGF-NVF  435 (440)
T ss_pred             hhccccccchhcCCceeEEEecchh---HhhhheeccCCCCeEEEecccce-eEE
Confidence                           0112232221   12246777766788999888884 444

>KOG0301|consensus

Probab=99.92  E-value=1.3e-23  Score=162.25  Aligned_cols=176  Identities=19%  Similarity=0.241  Sum_probs=152.6

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      ..+++|+.|.+|.+|...+.++..++ +|...|.+++...++  .+++||.|.++++|..  +++...+++|+..|.++.
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~  147 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVA  147 (745)
T ss_pred             cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecc--hhhhcccCCcchheeeee
Confidence            35888999999999999999999887 999999999988776  4999999999999975  556667999999999999


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCc
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGY  165 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~  165 (224)
                      .-| ++ .++||+.|..|++|.-  ++.+..+.+|.+.|+.+++-+++ .+++++.||.|+.|++ +++.+.+. +|...
T Consensus       148 ~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~  221 (745)
T KOG0301|consen  148 SLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF  221 (745)
T ss_pred             ecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceE
Confidence            999 54 8999999999999986  45678888999999999998864 5678889999999999 56666665 88888


Q ss_pred             ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        166 YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +.++....      +++.++++++|++++||+..
T Consensus       222 vYsis~~~------~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  222 VYSISMAL------SDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEEEEecC------CCCeEEEecCCceEEEeecC
Confidence            88766333      68899999999999999987

>KOG4328|consensus

Probab=99.92  E-value=3.3e-23  Score=153.17  Aligned_cols=199  Identities=19%  Similarity=0.245  Sum_probs=158.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCce----eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDP----IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---------   70 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------   70 (224)
                      .+-+++|+|+.-|+|-+||+.++++    +..+ .|..+|.++.|+|.+...+++.+.||+|++-|++...         
T Consensus       198 ~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~  277 (498)
T KOG4328|consen  198 ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT  277 (498)
T ss_pred             CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCc
Confidence            4447899999999999999964332    2333 7999999999999988899999999999988876432         


Q ss_pred             ------------------------------------cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce
Q psy11351         71 ------------------------------------EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE  114 (224)
Q Consensus        71 ------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  114 (224)
                                                          ....+.-|+..|..++++|....+|+|++.|++++|||+|....
T Consensus       278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~  357 (498)
T KOG4328|consen  278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG  357 (498)
T ss_pred             cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence                                                01123456678999999999999999999999999999996432


Q ss_pred             ----eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC----CCCCcceecccCCcc-cceeeeEEEEeCCCCeEEE
Q psy11351        115 ----VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT----RSSSPVAQFDHEGYY-NSCTMKSCCFAGTQDEYVV  185 (224)
Q Consensus       115 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  185 (224)
                          ......|...|.+..|||.+..|++.+.|..|+|||.    ..-.+...+.|.... ..+....+.|.| +..+++
T Consensus       358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~  436 (498)
T KOG4328|consen  358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIV  436 (498)
T ss_pred             CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC-CccEEE
Confidence                2444579999999999999888999999999999998    345566666665433 334445689999 799999


Q ss_pred             EcCCCCeEEEEeCCCCCeE
Q psy11351        186 SGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       186 s~~~d~~v~iw~~~~~~~~  204 (224)
                      +|..-..|-|+|-..++..
T Consensus       437 vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  437 VGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             EeccCcceeEEcCCCCEEe
Confidence            9999999999998888743

>KOG1408|consensus

Probab=99.92  E-value=6.2e-24  Score=165.04  Aligned_cols=194  Identities=18%  Similarity=0.235  Sum_probs=162.4

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCc-ccceeec
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSR-EEATELA   76 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~   76 (224)
                      ++++.+|++||+|..-|+++||++..-+..... .|+.+|.|+.|+..  +.++|++++.|+.|++||+... .+++++.
T Consensus       465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld  544 (1080)
T KOG1408|consen  465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD  544 (1080)
T ss_pred             EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence            367889999999999999999999987776666 89999999999842  2368999999999999998543 2344444


Q ss_pred             cCCcC-------------------------------------------------eEEEEEcCCCCCeEEEecCCCcEEEE
Q psy11351         77 VNSGP-------------------------------------------------FHAVMFNPVEARLVATANSKDGIALY  107 (224)
Q Consensus        77 ~~~~~-------------------------------------------------i~~~~~~~~~~~~l~~~~~dg~v~i~  107 (224)
                      +|...                                                 ++.|+..| ...++++++.|+.|+||
T Consensus       545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif  623 (1080)
T KOG1408|consen  545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIF  623 (1080)
T ss_pred             ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEE
Confidence            44444                                                 45555555 56688999999999999


Q ss_pred             ecCCCceeeEeec---CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeE
Q psy11351        108 DTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEY  183 (224)
Q Consensus       108 d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
                      |+.+++....+.+   |++..-.+...|.|.|+++.+.|.++.++|.-+++++... +|.+.++.+.|..      |-+.
T Consensus       624 ~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n------DCkH  697 (1080)
T KOG1408|consen  624 DIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN------DCKH  697 (1080)
T ss_pred             eccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc------cchh
Confidence            9999988888875   6677888999999999999999999999999999999887 8988888866655      8999


Q ss_pred             EEEcCCCCeEEEEeCCCC
Q psy11351        184 VVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       184 l~s~~~d~~v~iw~~~~~  201 (224)
                      |++.+.||.|.||.+...
T Consensus       698 lISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             heeecCCceEEEEECchh
Confidence            999999999999998764

>KOG4378|consensus

Probab=99.92  E-value=1.9e-23  Score=156.17  Aligned_cols=196  Identities=15%  Similarity=0.256  Sum_probs=161.8

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC-CcCeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-SGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~   83 (224)
                      ...++++|+..+.|+|||++...+++.. +|...|+++.++..+ .+||+++..|.|.|..+.++.....+... ...+.
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            3468999999999999999966666665 899999999999887 79999999999999999998877777544 33566


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcceecc
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~~~~~  161 (224)
                      -+.|+|....+|.+++.+|.|.+||+....+..... .|..+...++|+|.. ..|++.+.|..|.+||.+..+....+.
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~  248 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT  248 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence            899999777788899999999999998766655554 599999999999975 567788999999999999877777765


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeee
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD  208 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~  208 (224)
                      ...+...     ++|.+ +|.+|++|+..|.|..||++..+..+...
T Consensus       249 y~~Plst-----vaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~  289 (673)
T KOG4378|consen  249 YSHPLST-----VAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVR  289 (673)
T ss_pred             ecCCcce-----eeecC-CceEEEeecCCceEEEEecccCCCCceEe
Confidence            4445444     56666 79999999999999999999887654433

>KOG0641|consensus

Probab=99.92  E-value=2.7e-22  Score=136.64  Aligned_cols=186  Identities=22%  Similarity=0.300  Sum_probs=153.6

Q ss_pred             CCcceEEEEEe-CCCcEEEEeCCCCceeeEE-eccCCeeEEE-EcCCCCcEEEEecCCCEEEEEecCCcccceeecc--C
Q psy11351          4 GDPIKVLRVIG-NDDHVISHDMASGDPIDFY-LHERPVYGLS-VDPSQDAIFASACDDGRVLLFDTRSREEATELAV--N   78 (224)
Q Consensus         4 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~   78 (224)
                      +..+.+|++++ .|..|.+=|..+++....+ +|++.|.++- |+  + .++++|+.|.+|++||++-..++.++..  |
T Consensus       149 ~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~  225 (350)
T KOG0641|consen  149 ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH  225 (350)
T ss_pred             CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCccc
Confidence            34466777765 5788999999999988877 9999999884 54  4 7999999999999999998887776631  1


Q ss_pred             -----CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         79 -----SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        79 -----~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                           .+.|.+++..| .+++|++|-.|....+||++.+..+..+..|...|.++.|+|...|+++++.|..|++-|+..
T Consensus       226 ~~glessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  226 DGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCcccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence                 25799999999 999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             C----Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        154 S----SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       154 ~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      .    -++... +|...+     ..+.|+| ..--+++.+.|.++.+|-++
T Consensus       305 dla~el~~~vv~ehkdk~-----i~~rwh~-~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  305 DLAHELPIMVVAEHKDKA-----IQCRWHP-QDFSFISSSADKTATLWALN  349 (350)
T ss_pred             chhhcCceEEEEeccCce-----EEEEecC-ccceeeeccCcceEEEeccC
Confidence            2    122222 455443     2378888 46668888999999999765

>KOG0639|consensus

Probab=99.91  E-value=9.5e-24  Score=158.07  Aligned_cols=194  Identities=15%  Similarity=0.223  Sum_probs=160.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC---ceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce--
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG---DPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT--   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--   73 (224)
                      +++++.+.+.||+ .|.|+|||+...   .++..+   .-...|.++..+|+| +.|++|++-.++.|||+....+..  
T Consensus       426 tIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprika  503 (705)
T KOG0639|consen  426 TISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKA  503 (705)
T ss_pred             EecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhh
Confidence            4578888999998 578999999743   233333   356789999999999 899999999999999998765432  


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .+....-.+.+++.+| +.++.+++..||.|.|||+++...+..+.+|.+.+.|+..++||..|-+|+-|++|+.||+++
T Consensus       504 eltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  504 ELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             hcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence            2333334678899999 899999999999999999999989999999999999999999999999999999999999999


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.+........+-+     +.+.| ++++++.|-+++.+-+-.....+..
T Consensus       583 grqlqqhdF~SQIfS-----Lg~cP-~~dWlavGMens~vevlh~skp~ky  627 (705)
T KOG0639|consen  583 GRQLQQHDFSSQIFS-----LGYCP-TGDWLAVGMENSNVEVLHTSKPEKY  627 (705)
T ss_pred             hhhhhhhhhhhhhee-----cccCC-CccceeeecccCcEEEEecCCccce
Confidence            998887766666555     44455 7999999999999988877665553

>KOG1332|consensus

Probab=99.91  E-value=5.2e-23  Score=141.16  Aligned_cols=197  Identities=11%  Similarity=0.145  Sum_probs=149.8

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCC-CcEEEEecCCCEEEEEecCCc-c--cceeeccC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQ-DAIFASACDDGRVLLFDTRSR-E--EATELAVN   78 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~~   78 (224)
                      -|.+||+++.||.|.||.-+.++..+..   .|...|++++|-|.+ .-.|++++.||.|.|.+.+.. .  .......|
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            4789999999999999999988655443   799999999999865 247899999999999998765 2  23445789


Q ss_pred             CcCeEEEEEcCCC--C-----------CeEEEecCCCcEEEEecCCCc--eeeEeecCCCceeEEEEcCCC----CeEee
Q psy11351         79 SGPFHAVMFNPVE--A-----------RLVATANSKDGIALYDTRKPK--EVLMQYGSCESCMSIRFNKAG----TQLLG  139 (224)
Q Consensus        79 ~~~i~~~~~~~~~--~-----------~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~  139 (224)
                      .-.+++++|.|..  +           +.|++|+.|..|+||+...++  ....+.+|.+.|+.++|.|.-    .+|++
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence            9999999999931  2           569999999999999998753  223366799999999999973    48999


Q ss_pred             eecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.||++.||..+......+...-.....+ ...+.|++ .++.|+.++.|..+.+|.-....++
T Consensus       229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~-~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gkw  291 (299)
T KOG1332|consen  229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDV-VWRVSWSL-SGNILAVSGGDNKVTLWKENVDGKW  291 (299)
T ss_pred             ecCCCcEEEEEecCccCcccccccccCCcc-eEEEEEec-cccEEEEecCCcEEEEEEeCCCCcE
Confidence            999999999987632111111111111221 23467777 6999999999999999986655444

>KOG0303|consensus

Probab=99.91  E-value=1.5e-22  Score=147.36  Aligned_cols=197  Identities=14%  Similarity=0.163  Sum_probs=150.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCC-------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASG-------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      +.+.+|+||+|.+|.||++..+       +++..+ +|...|--++|+|.-.+.|++++.|.+|.+||+.+++.+.++. 
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-  171 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-  171 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence            3468999999999999998754       233444 9999999999999988999999999999999999999888877 


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC-ceeEEEEcCCCCeEeeee---cCCCcEEEECCC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE-SCMSIRFNKAGTQLLGLR---RRLPPVLYNTRS  153 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~---~d~~v~v~d~~~  153 (224)
                      |...|.++.|+. ++.++++++.|.+|+|||.++++.+..-..|.+ ....+.|-.+|..+.+|-   .+..+-+||..+
T Consensus       172 hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  172 HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence            999999999999 999999999999999999999988777766665 455677888888555553   467799998766


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEee
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVS  206 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~  206 (224)
                      .+.-..+..-...+.+-+  --|.++..-..++|-.|+.|+.|.+.+....+.
T Consensus       251 l~eP~~~~elDtSnGvl~--PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~h  301 (472)
T KOG0303|consen  251 LEEPIALQELDTSNGVLL--PFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVH  301 (472)
T ss_pred             ccCcceeEEeccCCceEE--eeecCCCCEEEEEecCCcceEEEEecCCCceeE
Confidence            433222211111122221  123443334467788899999999998876433

>KOG0307|consensus

Probab=99.91  E-value=7.5e-24  Score=171.37  Aligned_cols=209  Identities=20%  Similarity=0.283  Sum_probs=160.4

Q ss_pred             eEEEEEeCCCcEEEEeCCC---Cc---eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee--ccC
Q psy11351          8 KVLRVIGNDDHVISHDMAS---GD---PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL--AVN   78 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~---~~---~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~   78 (224)
                      .++|.|.+||.|.+||...   +.   .+..+ .|.+.|..++|++..+++||+|+.||.|.|||+.+.+.....  ...
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            3689999999999999875   22   22333 799999999999998789999999999999999876544433  224


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC--ceeEEEEcCCC-CeEeeeecCC---CcEEEECC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE--SCMSIRFNKAG-TQLLGLRRRL---PPVLYNTR  152 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~v~v~d~~  152 (224)
                      .+.|.+++|+.....+|++++.+|++.|||+|..+.+..+..+..  .+..++|+|+. ..+++++.|.   .|.+||+|
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            568999999997889999999999999999998877777765544  47789999985 4566666553   48999998


Q ss_pred             CC-Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        153 SS-SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       153 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      .. .+++++ .|...+.+     +.|.+.|..+|++++.|+++.+|+.++++..-.-..  -+.-.+++.+.|
T Consensus       241 ~assP~k~~~~H~~Gils-----lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  241 FASSPLKILEGHQRGILS-----LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCP  306 (1049)
T ss_pred             ccCCchhhhcccccceee-----eccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecC
Confidence            64 556666 46555444     777777779999999999999999999988611111  144455566554

>KOG1539|consensus

Probab=99.91  E-value=2e-23  Score=164.12  Aligned_cols=190  Identities=16%  Similarity=0.218  Sum_probs=167.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      +.+..|++.+.|+..|+|-+||+++|-....+    .|..+|++++....+ +.+++++.+|.++.||..+...+..++.
T Consensus       455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l  533 (910)
T KOG1539|consen  455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRL  533 (910)
T ss_pred             EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeecc
Confidence            34677899999999999999999999888877    699999999999887 8999999999999999998887777754


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                       ...+.++..+. ...+++.+..|-.|.++|..+.+....+.+|...|++++|||||++|++++.|++|++||+.++.++
T Consensus       534 -~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  534 -GSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             -CCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence             45688888888 7889999999999999999999889999999999999999999999999999999999999999998


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCC-CeEEEEeCCC
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-FVLYMWRVPR  200 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~v~iw~~~~  200 (224)
                      -.+........     +.|+| ++++|+|...| .-|++|.=.+
T Consensus       612 D~~~vd~~~~s-----ls~SP-ngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  612 DGLLVDSPCTS-----LSFSP-NGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eeEecCCccee-----eEECC-CCCEEEEEEecCceEEEEEchh
Confidence            88755555444     56666 79999999988 6899996443

>KOG1446|consensus

Probab=99.91  E-value=9.6e-22  Score=139.33  Aligned_cols=189  Identities=17%  Similarity=0.136  Sum_probs=146.2

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc--ccceeec---c
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR--EEATELA---V   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~---~   77 (224)
                      .++-+..+++++.|++||+||++..++...+. ...-..++|.|+| -++|++.....|++||+|.-  .+..++.   .
T Consensus       108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~  185 (311)
T KOG1446|consen  108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDN  185 (311)
T ss_pred             ecCCCCeEEecccCCeEEeeEecCCCCceEEe-cCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCC
Confidence            34556789999999999999999888776662 2233458899999 78999888889999999864  3444443   3


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCc---eeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES---CMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      ...+.+.+.|+| +|+.++.++..+.+++.|.-++..+..+..+...   --...|+||++++++|+.||+|++|+++++
T Consensus       186 ~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  186 DEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             CccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            356889999999 8999999999999999999999877776654332   256789999999999999999999999999


Q ss_pred             Ccceecc--cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        155 SPVAQFD--HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +.+..+.  +.+++.+     +.|+| .-..++++  +..+.+|-....+
T Consensus       265 ~~v~~~~~~~~~~~~~-----~~fnP-~~~mf~sa--~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  265 KKVAVLRGPNGGPVSC-----VRFNP-RYAMFVSA--SSNLVFWLPDEDA  306 (311)
T ss_pred             cEeeEecCCCCCCccc-----cccCC-ceeeeeec--CceEEEEeccccc
Confidence            9998883  3455554     44655 34555554  5678888655443

>KOG1034|consensus

Probab=99.90  E-value=1.9e-22  Score=143.76  Aligned_cols=191  Identities=14%  Similarity=0.109  Sum_probs=150.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---ccCCcCe
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---AVNSGPF   82 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~i   82 (224)
                      .-++|+|+.-|.|+|.|+.++++...+ +|...|+.+.++|+.++++++++.|.+|++|++++..++..+   .+|.+.|
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            458899999999999999999998877 999999999999999999999999999999999999988776   6799999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCce------e----------------eEee------cC-------------
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKE------V----------------LMQY------GS-------------  121 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~------~----------------~~~~------~~-------------  121 (224)
                      .++.|++ ++..+++++.|..+++|++...+-      .                ..+.      -|             
T Consensus       185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~  263 (385)
T KOG1034|consen  185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF  263 (385)
T ss_pred             EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence            9999999 889999999999999999983110      0                0000      01             


Q ss_pred             -----------------------------------------CCceeE--EEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351        122 -----------------------------------------CESCMS--IRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus       122 -----------------------------------------~~~v~~--~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                                                               ...++-  .+|+|.++.|+.|...|.+++||++..++..
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~  343 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK  343 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence                                                     111222  3445667788999999999999999887753


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      .-.+...+....+...+|+- ++.+|+....|+.|.-||..
T Consensus       344 ~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  344 CTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            33332333333445566666 79999999999999999854

>KOG0294|consensus

Probab=99.90  E-value=1.2e-21  Score=138.96  Aligned_cols=191  Identities=14%  Similarity=0.182  Sum_probs=148.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCc--------e----eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          9 VLRVIGNDDHVISHDMASGD--------P----IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~--------~----~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      .+++|+....|.=+++....        +    +..+ .|.+.+++++.+  + .++++|+.|.+|+|||+++......+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccchhhhcce
Confidence            36778887777777664221        1    1122 799999999998  4 79999999999999999999999999


Q ss_pred             ccCCcCeEEEEEcCCCCC--eEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         76 AVNSGPFHAVMFNPVEAR--LVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~--~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ..|.+.|+++.|.+ ...  .|++|+.||.|.+|+......+..+..|.+.|+.++.+|.++..++.+.|+.++.||+-+
T Consensus        80 l~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   80 LSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             eccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            99999999999998 443  899999999999999999988999999999999999999999999999999999999876


Q ss_pred             CCcceecc--c---------CCcc------ccee----------------eeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        154 SSPVAQFD--H---------EGYY------NSCT----------------MKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       154 ~~~~~~~~--~---------~~~~------~~~~----------------~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      |+.-....  +         .+..      +.+.                ....+..+.++..|++|..|+.|.+||..+
T Consensus       159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             CccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence            64332221  1         1110      0000                002233333677889999999999999887


Q ss_pred             CCe
Q psy11351        201 DDI  203 (224)
Q Consensus       201 ~~~  203 (224)
                      ..+
T Consensus       239 ~~~  241 (362)
T KOG0294|consen  239 DTP  241 (362)
T ss_pred             Ccc
Confidence            544

>KOG4283|consensus

Probab=99.90  E-value=4.8e-22  Score=140.04  Aligned_cols=193  Identities=15%  Similarity=0.129  Sum_probs=149.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCC--cEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD--AIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      ..++.+++.|.++++||.++-+....+..++.|++-+++|-..  .++|+|..|-.|++.|+.+|...+++.+|.+.|.+
T Consensus       114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             CceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            3478999999999999999999888888899999999998531  47889999999999999999999999999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCC-ceeeE--------------eecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKP-KEVLM--------------QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      +.|+|...-.|++|+.||.|++||+|.. .+...              -..|.+.+..++|+.++.++++++.|..+++|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            9999977788899999999999999864 22211              12477889999999999999999999999999


Q ss_pred             ECCCCCcce-ecc---cCCc------ccceeeeEEEEeCCCC-eEEEEcCCCCeEEEEeCC
Q psy11351        150 NTRSSSPVA-QFD---HEGY------YNSCTMKSCCFAGTQD-EYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       150 d~~~~~~~~-~~~---~~~~------~~~~~~~~~~~~~~~~-~~l~s~~~d~~v~iw~~~  199 (224)
                      +..+|+.-. .+.   |...      +.+.......+.|.++ -.|++..+...|+.|+..
T Consensus       274 n~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  274 NMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             ecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence            998774322 121   1111      1121222233344332 346666667778888777

>KOG1408|consensus

Probab=99.90  E-value=7e-23  Score=159.28  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=155.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCc---e-----------------------------------eeEEeccCCeeEEEEcCCCC
Q psy11351          8 KVLRVIGNDDHVISHDMASGD---P-----------------------------------IDFYLHERPVYGLSVDPSQD   49 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~---~-----------------------------------~~~~~~~~~v~~~~~~~~~~   49 (224)
                      ..+.+++.|++||+||+..+.   .                                   ...++....+.+++.+|++ 
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-  471 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-  471 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-
Confidence            458999999999999987521   0                                   0111234579999999999 


Q ss_pred             cEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCC--CCCeEEEecCCCcEEEEecCCCce-eeEeecCC----
Q psy11351         50 AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPV--EARLVATANSKDGIALYDTRKPKE-VLMQYGSC----  122 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~----  122 (224)
                      ++|++|..-|++++|++..-+....+..|+.+|.|+.|+..  ...+||+++.|+.|++||+...-. +..+.+|.    
T Consensus       472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT  551 (1080)
T KOG1408|consen  472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT  551 (1080)
T ss_pred             ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence            99999999999999999998888899999999999999852  357899999999999999865321 11112222    


Q ss_pred             ---------------------------------------------CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351        123 ---------------------------------------------ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus       123 ---------------------------------------------~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                                                                   ..++.|+..|..+++++++.|..|+||+++++++.
T Consensus       552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~  631 (1080)
T KOG1408|consen  552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV  631 (1080)
T ss_pred             EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence                                                         23466777777788899999999999999999999


Q ss_pred             eecc----cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEe-eCCcee
Q psy11351        158 AQFD----HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVC-RHGSLE  218 (224)
Q Consensus       158 ~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~  218 (224)
                      +.|+    |++..     ..+...| .+.|+++...|+++.++|..+|++.     ..+ ||+.+.
T Consensus       632 k~FKgs~~~eG~l-----IKv~lDP-SgiY~atScsdktl~~~Df~sgEcv-----A~m~GHsE~V  686 (1080)
T KOG1408|consen  632 KSFKGSRDHEGDL-----IKVILDP-SGIYLATSCSDKTLCFVDFVSGECV-----AQMTGHSEAV  686 (1080)
T ss_pred             eeecccccCCCce-----EEEEECC-CccEEEEeecCCceEEEEeccchhh-----hhhcCcchhe
Confidence            9993    33332     3355556 7999999999999999999999986     333 676554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.6e-21  Score=144.83  Aligned_cols=188  Identities=11%  Similarity=0.106  Sum_probs=141.6

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      ..+++++.|+.+++||+.+++.+..+.+...+.+++|+|++..++++++.++.|++||..+++....+..+.. +..++|
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence            5788999999999999999998887755555788999999843457788899999999998887766655443 567899


Q ss_pred             cCCCCCeE-EEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC-CcEEEECCCCCcceecccCCc
Q psy11351         88 NPVEARLV-ATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL-PPVLYNTRSSSPVAQFDHEGY  165 (224)
Q Consensus        88 ~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~v~d~~~~~~~~~~~~~~~  165 (224)
                      +| +++.+ ++++.++.+++||+++.+.+..+. ....+.+++|+|++++++++..++ .+.+||.++++..........
T Consensus        81 ~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (300)
T TIGR03866        81 HP-NGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR  158 (300)
T ss_pred             CC-CCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence            99 66655 455678999999999876554443 334568899999999999888765 467789888766554422222


Q ss_pred             ccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCCCCCeE
Q psy11351        166 YNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..     .+.|+| +++++ +++..++.|++||+.+++..
T Consensus       159 ~~-----~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~  192 (300)
T TIGR03866       159 PR-----FAEFTA-DGKELWVSSEIGGTVSVIDVATRKVI  192 (300)
T ss_pred             cc-----EEEECC-CCCEEEEEcCCCCEEEEEEcCcceee
Confidence            22     366777 57666 55567999999999988653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2919|consensus

Probab=99.90  E-value=5.4e-22  Score=141.32  Aligned_cols=193  Identities=17%  Similarity=0.283  Sum_probs=150.0

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE---eccC---CeeEEEEcCCCCcEEEEecCCCEEEEEec-CCccc--cee-
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY---LHER---PVYGLSVDPSQDAIFASACDDGRVLLFDT-RSREE--ATE-   74 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~--~~~-   74 (224)
                      +...++++.+.|.-|++||.-+|+....+   .|..   +..+++|+|+| ..|++| ...+|+++|+ |.|..  +.. 
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCcchhh
Confidence            34568889999999999999999988766   4443   45689999999 566655 5689999999 55542  111 


Q ss_pred             ----eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCCcEEE
Q psy11351         75 ----LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLPPVLY  149 (224)
Q Consensus        75 ----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~  149 (224)
                          -.+..+-|.+++|+|.+...++.|+....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|.. |..|.+|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence                12346788999999988889999999999999988777777778899999999999999999999874 6779999


Q ss_pred             ECCCC-Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC-CC
Q psy11351        150 NTRSS-SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR-DD  202 (224)
Q Consensus       150 d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~-~~  202 (224)
                      |++.. .++..+ +|.+..+.-.+  ....| .+++|++|+.||.|++||+++ +.
T Consensus       279 DiR~~~~pv~~L~rhv~~TNQRI~--FDld~-~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  279 DIRYSRDPVYALERHVGDTNQRIL--FDLDP-KGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             eehhccchhhhhhhhccCccceEE--EecCC-CCceeeccCCCccEEEEecCCCCC
Confidence            99864 555555 45553333221  22344 689999999999999999998 44

>KOG0303|consensus

Probab=99.90  E-value=1.7e-22  Score=147.16  Aligned_cols=164  Identities=18%  Similarity=0.301  Sum_probs=141.0

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-------ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-------EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL  106 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i  106 (224)
                      +|+++|.+++|+|.+.+.+|+|++|.+|.||.+..+       +++..+.+|...|.-++|+|.-.+.|++++.|..|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            899999999999998899999999999999998654       3566788999999999999988899999999999999


Q ss_pred             EecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEE
Q psy11351        107 YDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVV  185 (224)
Q Consensus       107 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  185 (224)
                      |++.+++.+..+. |...|.++.|+.+|.+|++.+.|..|+|||.++++.+.+- .|.+.-..    .+.|.. ++..+.
T Consensus       159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~----Raifl~-~g~i~t  232 (472)
T KOG0303|consen  159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA----RAIFLA-SGKIFT  232 (472)
T ss_pred             EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc----eeEEec-cCceee
Confidence            9999998887776 9999999999999999999999999999999999998887 57665432    233433 677665


Q ss_pred             EcC---CCCeEEEEeCCCCCe
Q psy11351        186 SGS---DDFVLYMWRVPRDDI  203 (224)
Q Consensus       186 s~~---~d~~v~iw~~~~~~~  203 (224)
                      ||-   .++++-+||..+-+.
T Consensus       233 TGfsr~seRq~aLwdp~nl~e  253 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEE  253 (472)
T ss_pred             eccccccccceeccCcccccC
Confidence            553   478999999877655

>KOG2048|consensus

Probab=99.90  E-value=2.8e-21  Score=149.02  Aligned_cols=197  Identities=14%  Similarity=0.181  Sum_probs=159.3

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      ||.++..+.||.+-.||.|.||++..+=.....   +-+..|.+++|.+.  ..|++.+.+|.|.-||+.+.++...+..
T Consensus        31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk~~~~~d~  108 (691)
T KOG2048|consen   31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLKQKYNIDS  108 (691)
T ss_pred             EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCceeEEecC
Confidence            577788888999999999999999886544433   44678999999965  4888999999999999999999999988


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE--eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM--QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      ..+.|.+++.+| .+..++.|+.||.+..++...++....  +...++.+.+++|+|++..++.|+.||.|++||..++.
T Consensus       109 ~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  109 NGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             CCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence            899999999999 889999999999777777766543222  22467899999999999999999999999999999988


Q ss_pred             cceec-----ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        156 PVAQF-----DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       156 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+...     +....-..+.| ++.|.  ....|++|..-|.|.+||...+.+
T Consensus       188 t~~~~~~~~d~l~k~~~~iVW-Sv~~L--rd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  188 TLHIITMQLDRLSKREPTIVW-SVLFL--RDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             eEEEeeecccccccCCceEEE-EEEEe--ecCcEEEecCCceEEEEcccCcch
Confidence            77633     11221223333 34444  357899999999999999998866

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.5e-20  Score=140.70  Aligned_cols=193  Identities=11%  Similarity=0.095  Sum_probs=139.4

Q ss_pred             CCCcceEEE-EEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC-EEEEEecCCcccceeeccCCc
Q psy11351          3 SGDPIKVLR-VIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG-RVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         3 ~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ..+.++.++ +++.|+.+++||+.+++.+..+.+...+.+++|+|++ .+++++..++ .+.+||.++++....+.. ..
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~  157 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ  157 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence            345566554 5567899999999988877777655667899999998 7887777664 567789988776554432 23


Q ss_pred             CeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCceeeEeecC-------CCceeEEEEcCCCCeEeee-ecCCCcEEEEC
Q psy11351         81 PFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKEVLMQYGS-------CESCMSIRFNKAGTQLLGL-RRRLPPVLYNT  151 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~  151 (224)
                      ....++|+| +++++ +++..++.|++||+++++....+..+       ......++|+|++++++++ ..++.+.+||+
T Consensus       158 ~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       158 RPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             CccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence            457899999 66666 45556899999999988665544321       1123568899999986554 45667999999


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEc-CCCCeEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSG-SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~iw~~~~~~~~  204 (224)
                      ++++....+.+...+.     .++|+| ++++|+++ +.++.|.+||+.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~-----~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       237 KTYEVLDYLLVGQRVW-----QLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             CCCcEEEEEEeCCCcc-----eEEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            9887766554333333     367777 67777765 56899999999998875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=99.89  E-value=9.1e-22  Score=150.97  Aligned_cols=196  Identities=15%  Similarity=0.189  Sum_probs=145.3

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCcee-------eEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee--ec
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPI-------DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE--LA   76 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~   76 (224)
                      .-.+|+.+.+||.|.++|.......       ....|..+|.++.|-| ++..|++++.|.++++||+++.+....  +.
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeec
Confidence            3458999999999999998754332       2237999999999999 558999999999999999999887766  88


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee--e-------------------------EeecCCCceeE--
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV--L-------------------------MQYGSCESCMS--  127 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--~-------------------------~~~~~~~~v~~--  127 (224)
                      +|.+.+.+++|.|.+...|++|+.||.+.|||++....-  .                         .-..+...|.+  
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv  221 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV  221 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence            999999999999999999999999999999999853200  0                         00013334444  


Q ss_pred             -EEEcCCCCeEeeeec-CCCcEEEECCCCCcceecc-------cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        128 -IRFNKAGTQLLGLRR-RLPPVLYNTRSSSPVAQFD-------HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       128 -~~~~~~~~~l~~~~~-d~~v~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                       +.+..|...|++++. |+.|+|||++.........       +........+..++... .|.+|.+...|+.|+.|++
T Consensus       222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm  300 (720)
T KOG0321|consen  222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNM  300 (720)
T ss_pred             EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEec
Confidence             556678888888877 9999999998754433321       11111233344444443 3566665556999999999


Q ss_pred             CCCCe
Q psy11351        199 PRDDI  203 (224)
Q Consensus       199 ~~~~~  203 (224)
                      .+...
T Consensus       301 ~s~s~  305 (720)
T KOG0321|consen  301 RSLSI  305 (720)
T ss_pred             cccCc
Confidence            87654

>KOG2096|consensus

Probab=99.89  E-value=2.4e-21  Score=137.86  Aligned_cols=192  Identities=12%  Similarity=0.088  Sum_probs=146.1

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCce-----eeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---cc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDP-----IDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EA   72 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~   72 (224)
                      |+++.+|++|++++.|++|+||++..-+.     ++.--.-+..+.+.|.||-...++++-...++++|-+...+   ..
T Consensus        92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~  171 (420)
T KOG2096|consen   92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS  171 (420)
T ss_pred             eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence            57788999999999999999999986432     22221123567899999987788888888899999874332   11


Q ss_pred             ---------eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC
Q psy11351         73 ---------TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        73 ---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                               ..-+.|+-.+-.+.... ++.++++++.|..|.+|+++ ++.+..+......-+..+.||+|+++++++..
T Consensus       172 ~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  172 HHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             cccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence                     11134555777788777 89999999999999999999 77777777666777888999999999999999


Q ss_pred             CCcEEEECC---CC---Ccceec---ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        144 LPPVLYNTR---SS---SPVAQF---DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       144 ~~v~v~d~~---~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ..|++|.+-   .|   +....+   +|...+.     .++|+| +...+++.+.||+.++||++-
T Consensus       250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~-----~~aFsn-~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL-----AAAFSN-SSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             CCceEEEEEeccCcchhhhhhhheeccchhhee-----eeeeCC-CcceeEEEecCCcEEEeeccc
Confidence            999999862   22   122222   3444443     377777 689999999999999999863

>KOG2445|consensus

Probab=99.89  E-value=7.7e-21  Score=134.50  Aligned_cols=195  Identities=15%  Similarity=0.236  Sum_probs=142.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCc----eeeEE-eccCCeeEEEEc-CCCCcEEEEecCCCEEEEEecCCc-------
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGD----PIDFY-LHERPVYGLSVD-PSQDAIFASACDDGRVLLFDTRSR-------   69 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~-~~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~-------   69 (224)
                      .+..|+.+|+|+.|++|+|||.++..    +.... .|.+.|..+.|. |.-++.+|+++.|+++.||.=...       
T Consensus        21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~  100 (361)
T KOG2445|consen   21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR  100 (361)
T ss_pred             ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence            46678999999999999999975433    22222 799999999996 443489999999999999975211       


Q ss_pred             --ccceeeccCCcCeEEEEEcCCC-CCeEEEecCCCcEEEEecCCCcee-------------------------------
Q psy11351         70 --EEATELAVNSGPFHAVMFNPVE-ARLVATANSKDGIALYDTRKPKEV-------------------------------  115 (224)
Q Consensus        70 --~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~~-------------------------------  115 (224)
                        ....++....+.|++++|.|.. +..+++++.||.++||+......+                               
T Consensus       101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s  180 (361)
T KOG2445|consen  101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPS  180 (361)
T ss_pred             eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccc
Confidence              1233455667789999999942 678899999999999976431100                               


Q ss_pred             ------------------------------------eEeecCCCceeEEEEcCC-C---CeEeeeecCCCcEEEECCCC-
Q psy11351        116 ------------------------------------LMQYGSCESCMSIRFNKA-G---TQLLGLRRRLPPVLYNTRSS-  154 (224)
Q Consensus       116 ------------------------------------~~~~~~~~~v~~~~~~~~-~---~~l~~~~~d~~v~v~d~~~~-  154 (224)
                                                          ..+..|..+|+.++|.|+ |   ..|++++.|| |+||.+... 
T Consensus       181 r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  181 RMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR  259 (361)
T ss_pred             cccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence                                                001237789999999997 3   4788999999 999998631 


Q ss_pred             -------------------Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 -------------------SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 -------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                         +.+..+ .|.+.+.+     ++|+- .|..|.+.+.||.|++|...-..++
T Consensus       260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr-----v~wNm-tGtiLsStGdDG~VRLWkany~n~~  323 (361)
T KOG2445|consen  260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR-----VRWNM-TGTILSSTGDDGCVRLWKANYNNLW  323 (361)
T ss_pred             chhhhhcccCCCCccccceEEeeeccCCCCceEE-----EEEee-eeeEEeecCCCceeeehhhhhhhhh
Confidence                               111223 35566555     55555 6999999999999999987654443

>KOG1036|consensus

Probab=99.89  E-value=3.3e-21  Score=136.23  Aligned_cols=176  Identities=14%  Similarity=0.154  Sum_probs=139.7

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE  114 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  114 (224)
                      -...|.++.|+|.+ +.|+++++||++++||+........+ .|..++.+++|.+  ...+++|+.||.|+.+|+.+++ 
T Consensus        12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~-   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN-   86 (323)
T ss_pred             ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC--CceEEEeccCceEEEEEecCCc-
Confidence            35789999999988 78888889999999999887654444 5788999999987  5788999999999999999874 


Q ss_pred             eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEE
Q psy11351        115 VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY  194 (224)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~  194 (224)
                      ...+..|..++.++.+++....+++|+-|++|++||.+.......+...+.|.++..        .++.|+.|..|..+.
T Consensus        87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--------~g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--------SGNRLVVGTSDRKVL  158 (323)
T ss_pred             ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--------cCCEEEEeecCceEE
Confidence            456667999999999999999999999999999999998666666655566665443        678899999999999


Q ss_pred             EEeCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        195 MWRVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      +||+++...........|....-.+.+.|
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~p  187 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVP  187 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEec
Confidence            99999987754333333333333333333

>KOG0646|consensus

Probab=99.88  E-value=2.7e-21  Score=143.34  Aligned_cols=187  Identities=10%  Similarity=0.117  Sum_probs=157.2

Q ss_pred             eEEEEEe-CCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          8 KVLRVIG-NDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         8 ~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ++++++. ....+.+|.+........+ --.++|.+++-+|.| .+|+.|+..|.|++|.+.+|..+..+..|-..|+++
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL  129 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL  129 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence            4566555 3457899998876554433 567899999999998 888888899999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCC---------CceeeEeecCCCceeEEEEcCC--CCeEeeeecCCCcEEEECCCC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRK---------PKEVLMQYGSCESCMSIRFNKA--GTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .|+. ++.+|++|+.||.|.+|++..         .++...+..|.-+|+.+...+.  ..++++++.|.++++||+..+
T Consensus       130 ~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  130 KFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             EEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence            9999 999999999999999997742         3455666789999999988765  468999999999999999999


Q ss_pred             CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ..+.++..+..+.++++.+      .+..+..|+.+|.|.+.++..-.
T Consensus       209 ~LLlti~fp~si~av~lDp------ae~~~yiGt~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  209 VLLLTITFPSSIKAVALDP------AERVVYIGTEEGKIFQNLLFKLS  250 (476)
T ss_pred             eeeEEEecCCcceeEEEcc------cccEEEecCCcceEEeeehhcCC
Confidence            9999887777777755555      68999999999999998876544

>KOG2055|consensus

Probab=99.88  E-value=2.1e-21  Score=143.87  Aligned_cols=193  Identities=13%  Similarity=0.209  Sum_probs=158.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc-
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG-   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-   80 (224)
                      .+++.+++++..+..|.|.+....+++.+..+...+.|.+++|+.++ +.|++++.+|.|.+||+++..+++.+....+ 
T Consensus       310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v  388 (514)
T KOG2055|consen  310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDGSV  388 (514)
T ss_pred             EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence            45677889999999999999999999999999999999999999998 7777777899999999999988888754222 


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCC------CceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRK------PKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTR  152 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~  152 (224)
                      .=++++.++ ++.+||+|+..|.|.|||..+      ++++..+..-...|++++|+|+++.|+.++.  +..+++-.+.
T Consensus       389 ~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP  467 (514)
T KOG2055|consen  389 HGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP  467 (514)
T ss_pred             ceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence            235677778 889999999999999999753      3444455556778999999999999988874  5679999988


Q ss_pred             CCCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        153 SSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       153 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +......+. ....+..  ..+++|+| ++.+|+.|..+|++.+|.+.
T Consensus       468 S~TVFsNfP~~n~~vg~--vtc~aFSP-~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  468 SCTVFSNFPTSNTKVGH--VTCMAFSP-NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceeeeccCCCCCCcccc--eEEEEecC-CCceEEeecCCCceeeEeec
Confidence            877777763 3333333  34578888 79999999999999999874

>KOG0307|consensus

Probab=99.88  E-value=1.5e-22  Score=163.93  Aligned_cols=192  Identities=17%  Similarity=0.216  Sum_probs=157.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc--C
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG--P   81 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~   81 (224)
                      +++||+|+.||.|.|||++.-+.-...   ...+.|.+++|+..-...|++++.+|.+.|||++..+++-.+..+..  .
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~  208 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH  208 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence            458999999999999999874433333   35678999999987667899999999999999999988877765544  5


Q ss_pred             eEEEEEcCCCCCeEEEecCCCc---EEEEecCCCceeeEe-ecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCc
Q psy11351         82 FHAVMFNPVEARLVATANSKDG---IALYDTRKPKEVLMQ-YGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~---v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      +..++|+|++...+++++.|..   |.+||+|....+... .+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.
T Consensus       209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV  288 (1049)
T ss_pred             eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence            7899999988888888877654   899999976555444 4899999999999876 8999999999999999999999


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +..+...+. .   +..+.|.|.+...+++++.||.|-||.+.+..
T Consensus       289 l~~~p~~~n-W---~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  289 LGELPAQGN-W---CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeecCCCCc-c---eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            998843221 1   23478888777899999999999999998765

>KOG1274|consensus

Probab=99.88  E-value=1.7e-20  Score=149.24  Aligned_cols=198  Identities=11%  Similarity=0.113  Sum_probs=164.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC-ceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG-DPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ..++.|+++++++.||.|++|+...- +.-..+. +...|.+++...   ++|++|+.+++|.+|.+.+++.-..+....
T Consensus        20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~Rft   96 (933)
T KOG1274|consen   20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILARFT   96 (933)
T ss_pred             EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeeeee
Confidence            45678899999999999999998765 3333443 788888888653   689999999999999999888665666667


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      -++.+++|+- ++.+++.|+.|-.|++-++........+.+|.++|.++.|+|.+++|++.+.||.|++||+.++.....
T Consensus        97 lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   97 LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             ccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            7899999999 999999999999999999998888889999999999999999999999999999999999999887777


Q ss_pred             cc----cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 FD----HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.    ..+....-.....+|+|. +..++....|+.|++|+..+.+..
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             cccCCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeh
Confidence            63    222232334556899994 556666677999999999988764

>KOG2096|consensus

Probab=99.87  E-value=1.1e-20  Score=134.46  Aligned_cols=183  Identities=12%  Similarity=0.163  Sum_probs=143.8

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC---Ccc-----ccee
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR---SRE-----EATE   74 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~-----~~~~   74 (224)
                      .+++.++++++.|.+|.||+++ |+.+..+ .....-+..+.+|+| .++++++..-.+++|.+-   .|.     .+..
T Consensus       196 A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~  273 (420)
T KOG2096|consen  196 AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS  273 (420)
T ss_pred             cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence            4677899999999999999999 7776666 445566788999999 899999999999999873   222     3567


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC----ceeeEee-------cCCCceeEEEEcCCCCeEeeeecC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP----KEVLMQY-------GSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      +++|+..|..++|+| +...+++.+.||++++||+.-.    +.+..+.       ...+....+.++|.|+.|+.+.. 
T Consensus       274 LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-  351 (420)
T KOG2096|consen  274 LKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-  351 (420)
T ss_pred             eccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-
Confidence            789999999999999 8999999999999999998631    1111111       12334458999999999988654 


Q ss_pred             CCcEEEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        144 LPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      ..+++|..++++....+  .|.+.+.+     +.|++ +|+++++++ |+.++++.
T Consensus       352 s~l~~~~se~g~~~~~~e~~h~~~Is~-----is~~~-~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  352 SDLKVFASEDGKDYPELEDIHSTTISS-----ISYSS-DGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CceEEEEcccCccchhHHHhhcCceee-----EEecC-CCcEEeeec-ceeeeeec
Confidence            45999999999888877  36666655     55555 799999987 77888875

>KOG1188|consensus

Probab=99.87  E-value=1.4e-20  Score=134.80  Aligned_cols=190  Identities=16%  Similarity=0.214  Sum_probs=147.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCC-CCcEEEEecCCCEEEEEecCCccccee--eccCC-cCe
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPS-QDAIFASACDDGRVLLFDTRSREEATE--LAVNS-GPF   82 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~-~~i   82 (224)
                      ..+|++-..|+|++||..+++.+..+ ++...++.+.|..+ ++..+.+|+.||+|++||+|+......  +..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            46888888999999999999988888 88999999999864 568899999999999999998765433  34444 356


Q ss_pred             EEEEEcCCCCCeEEEec----CCCcEEEEecCCCce-eeEee-cCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCC
Q psy11351         83 HAVMFNPVEARLVATAN----SKDGIALYDTRKPKE-VLMQY-GSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~----~dg~v~i~d~~~~~~-~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      .+++.+- ..+++++|+    .+..|.+||+|..+. +..+. .|...|+++.|+|. .+.|++|+.||-|.+||+....
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            6777665 678888885    466799999998876 33333 59999999999996 5789999999999999997653


Q ss_pred             c----ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        156 P----VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       156 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .    +..+.+...+.     .+.|.......+.+-+......+|+++.+.+
T Consensus       200 EeDaL~~viN~~sSI~-----~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIH-----LIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceee-----eeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            2    22333444343     4666654334688888899999999998865

>KOG0290|consensus

Probab=99.87  E-value=1.6e-20  Score=132.07  Aligned_cols=188  Identities=13%  Similarity=0.236  Sum_probs=148.3

Q ss_pred             eEEEEEeCCCcEEEEeCCCCc--ee--------eEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---cee
Q psy11351          8 KVLRVIGNDDHVISHDMASGD--PI--------DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---ATE   74 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~--~~--------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~   74 (224)
                      .+||+++.  .+|+|.+...+  ..        +...+..++++.+|+.-.++++.+.+-|-+..|||++++..   ...
T Consensus       114 dlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            35666543  79999987422  11        11157789999999998889999999999999999998743   445


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec---CCCceeEEEEcCC-CCeEeeeec-CCCcEEE
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSIRFNKA-GTQLLGLRR-RLPPVLY  149 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~-d~~v~v~  149 (224)
                      +-.|..+|..++|...+.+.||+.+.||.|++||+|..+....+++   ...+...++|++. -+++++-.. ...|.+.
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            6789999999999986678999999999999999998766555554   2457788899875 467776544 4569999


Q ss_pred             ECCCC-Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        150 NTRSS-SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       150 d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      |++.. .++.++ .|.+.|+.     ++|.|.....|++++.|.++.+||+.+.-
T Consensus       272 DiR~P~tpva~L~~H~a~VNg-----IaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNG-----IAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             EecCCCcceehhhcCcccccc-----eEecCCCCceeeecCCcceEEEEeccccc
Confidence            99864 566667 68898887     66777778899999999999999998653

>KOG0642|consensus

Probab=99.86  E-value=1.8e-20  Score=141.98  Aligned_cols=192  Identities=13%  Similarity=0.198  Sum_probs=152.3

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCC--------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASG--------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR------   69 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------   69 (224)
                      +-...|++++.||++++|+++..        +++..+ +|.++|.|+++.+++ ..+++|+.||+|+.|++...      
T Consensus       304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds  382 (577)
T KOG0642|consen  304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDS  382 (577)
T ss_pred             CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccc
Confidence            34457999999999999999432        355555 899999999999998 89999999999999966421      


Q ss_pred             ----ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceee-----------E-----------------
Q psy11351         70 ----EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL-----------M-----------------  117 (224)
Q Consensus        70 ----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-----------~-----------------  117 (224)
                          .....+.+|.+.+..+++++ ....|++++.||++++|+........           .                 
T Consensus       383 ~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  383 YDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             cCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence                12346789999999999999 78889999999999999876543200           0                 


Q ss_pred             ---------------eec--------CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeE
Q psy11351        118 ---------------QYG--------SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKS  173 (224)
Q Consensus       118 ---------------~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~  173 (224)
                                     +.+        ....+..+.++|.+...+++..|+.|+++|..+++++... .|...+.++++.+
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~  541 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP  541 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC
Confidence                           000        1123466788888889999999999999999999988777 5666666655555


Q ss_pred             EEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        174 CCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       174 ~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                            ++.+|++++.|+.+++|.+....+.
T Consensus       542 ------ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  542 ------NGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ------CCceEEeecCCceeehhhccchhee
Confidence                  8999999999999999999877664

>KOG2055|consensus

Probab=99.86  E-value=4.7e-20  Score=136.81  Aligned_cols=190  Identities=13%  Similarity=0.184  Sum_probs=154.5

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceeeccCC
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATELAVNS   79 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~   79 (224)
                      +....+++|+.||+++||.+....  .+..+ --..+|.+..|.|+|...+++++....++.||+.+.+.  +....+++
T Consensus       223 p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e  302 (514)
T KOG2055|consen  223 PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE  302 (514)
T ss_pred             CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc
Confidence            445689999999999999987543  33333 45679999999999955999999999999999988774  23333443


Q ss_pred             -cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         80 -GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        80 -~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                       ..+.....++ ++++++..+..|.|++.-..+++.+..+ ...+.|..+.|+.+++.|++++.+|.|++||++....+.
T Consensus       303 ~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~  380 (514)
T KOG2055|consen  303 EKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH  380 (514)
T ss_pred             cchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence             3577888899 8899999999999999998887654444 467889999999999999999999999999999999999


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .+...+.+....   +|.++ ++.+|++|+..|.|.|||.++
T Consensus       381 rf~D~G~v~gts---~~~S~-ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  381 RFVDDGSVHGTS---LCISL-NGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EEeecCccceee---eeecC-CCceEEeccCcceEEEeccch
Confidence            986666665433   56666 799999999999999999765

>KOG0771|consensus

Probab=99.86  E-value=5.6e-21  Score=140.13  Aligned_cols=191  Identities=18%  Similarity=0.159  Sum_probs=148.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec--c
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA--V   77 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~   77 (224)
                      ||.+.+|..+++|+.||++|||+..+.+.+... .|...|.+++|+|++ ++|++-+.| ..+||+.+++..+....  .
T Consensus       150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            467788899999999999999998877766655 899999999999999 899999999 99999999997665553  2


Q ss_pred             CCcCeEEEEEcCCCC-----CeEEEecCCCcEEEEecCCCce-----eeEeecCCCceeEEEEcCCCCeEeeeecCCCcE
Q psy11351         78 NSGPFHAVMFNPVEA-----RLVATANSKDGIALYDTRKPKE-----VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~-----~~l~~~~~dg~v~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  147 (224)
                      .......+.|+. ++     .+++.....+.|..||+.....     ..........|++++.+++|++++.|+.||.|-
T Consensus       228 k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  228 KDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             cchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            334677788887 54     3334444566788877764332     112223456899999999999999999999999


Q ss_pred             EEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        148 LYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       148 v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +++..+.+.++..  .|...|+.     +.|+| +.+++++.+.|....+..+.-
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~-----ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTG-----LTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeee-----EEEcC-CcCcccccccCCceeEEEEee
Confidence            9999888777766  36665555     55666 799999999999988887765

>KOG2048|consensus

Probab=99.86  E-value=3.1e-19  Score=137.90  Aligned_cols=189  Identities=12%  Similarity=0.178  Sum_probs=157.3

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc--eeeccCCcCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA--TELAVNSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~i   82 (224)
                      ++..|.+.+.+|+|.-||+.+.+.+... ...+.|++++.+|.+ ..++.|++||.+..+++..++..  ..+...++++
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence            4667888899999999999999988877 678899999999998 89999999998888888777643  3344556899


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-------c-CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-------G-SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .++.|+| ++..+++|+.||.|++||..++..+....       . ..--|+++.|-.+ ..+++|...|+|.+||...+
T Consensus       158 Lslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  158 LSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             EEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc
Confidence            9999999 88999999999999999999987766222       1 2334778887754 57889999999999999999


Q ss_pred             Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        155 SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+++.+ -|.+.+.+++...      +++++++++.|+.+..|...+++.
T Consensus       236 TLiqS~~~h~adVl~Lav~~------~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  236 TLIQSHSCHDADVLALAVAD------NEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             chhhhhhhhhcceeEEEEcC------CCCeEEEccCCCceEEEEecCCcc
Confidence            999998 5888888766655      789999999999999998877644

>KOG2110|consensus

Probab=99.86  E-value=7.5e-19  Score=127.22  Aligned_cols=178  Identities=10%  Similarity=0.176  Sum_probs=147.3

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc---CCcCeEEEEEcCCCCC
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV---NSGPFHAVMFNPVEAR   93 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~   93 (224)
                      +.+++++.+.+..+..+-...+|.++.++.   +.|+++=++ .|+|||+++.+.++++..   +...+.++.+++ .+.
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~  142 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANC  142 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCc
Confidence            458999998888777777888999999985   456666554 599999999998888753   445566777666 556


Q ss_pred             eEEEec--CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCC-cEEEECCCCCcceecccCCccccee
Q psy11351         94 LVATAN--SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLP-PVLYNTRSSSPVAQFDHEGYYNSCT  170 (224)
Q Consensus        94 ~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~v~d~~~~~~~~~~~~~~~~~~~~  170 (224)
                      +++.-+  ..|.|.+||+.+.+....+..|++.+-+++|+++|.+|++++..|+ |||+.+.+|+.+.+|+...  ..+.
T Consensus       143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~  220 (391)
T KOG2110|consen  143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVS  220 (391)
T ss_pred             eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eeeE
Confidence            776532  4688999999999888888899999999999999999999999988 7999999999999995433  3667


Q ss_pred             eeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        171 MKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +.+++|+| ++++|++.+..++|++|.+....
T Consensus       221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            88899999 69999999999999999998754

>KOG1539|consensus

Probab=99.85  E-value=1.3e-19  Score=143.01  Aligned_cols=203  Identities=12%  Similarity=0.182  Sum_probs=166.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCce-eeEEecc------CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---ccC
Q psy11351          9 VLRVIGNDDHVISHDMASGDP-IDFYLHE------RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---AVN   78 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~   78 (224)
                      .++..-.+..++.|+...... ...+.+.      ..+++++.++.| ++.+.|...|+|-+|++.+|-....+   ..|
T Consensus       414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence            455555677899999987654 2333443      789999999999 89999999999999999999877777   589


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      .++|+.++... .++.+++++.+|.++.||..+.. +.....-...+.++.++.....++.+..|-.|+++|..+.+.++
T Consensus       493 ~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  493 KGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             cCceeEEEecC-CCceEEEccCcceEEEEecCCcc-eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            99999999988 88999999999999999998764 33334456788889999988999999999999999999999999


Q ss_pred             ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        159 QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      .| +|...++.+     +||| ++++|++++.|++|++||+.++.+...   ..+..++..+++.|
T Consensus       571 ~f~gh~nritd~-----~FS~-DgrWlisasmD~tIr~wDlpt~~lID~---~~vd~~~~sls~SP  627 (910)
T KOG1539|consen  571 EFWGHGNRITDM-----TFSP-DGRWLISASMDSTIRTWDLPTGTLIDG---LLVDSPCTSLSFSP  627 (910)
T ss_pred             Hhhccccceeee-----EeCC-CCcEEEEeecCCcEEEEeccCcceeee---EecCCcceeeEECC
Confidence            99 699988874     4555 899999999999999999999988511   11256666666665

>KOG1273|consensus

Probab=99.85  E-value=4.9e-20  Score=131.05  Aligned_cols=159  Identities=15%  Similarity=0.199  Sum_probs=128.4

Q ss_pred             EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         32 FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                      ++.+.. ..|+.|++-| .+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++ +++.|++++.|..+.+||+..
T Consensus        20 tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   20 TLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             eccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccC
Confidence            344444 7899999999 8999999999999999999998888999999999999999 999999999999999999998


Q ss_pred             CceeeEeec---------CC-------------------------------------CceeEEEEcCCCCeEeeeecCCC
Q psy11351        112 PKEVLMQYG---------SC-------------------------------------ESCMSIRFNKAGTQLLGLRRRLP  145 (224)
Q Consensus       112 ~~~~~~~~~---------~~-------------------------------------~~v~~~~~~~~~~~l~~~~~d~~  145 (224)
                      +..+..+.-         |.                                     ....+..|.+.|+++++|...|.
T Consensus        97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk  176 (405)
T KOG1273|consen   97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK  176 (405)
T ss_pred             CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence            765443210         00                                     01122347777899999999999


Q ss_pred             cEEEECCCCCcceecccC--CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        146 PVLYNTRSSSPVAQFDHE--GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       146 v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +.++|..+.+.+..++..  ..+..     +.++. .++.|+..+.|+.|+.|+++
T Consensus       177 llv~~a~t~e~vas~rits~~~IK~-----I~~s~-~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRITSVQAIKQ-----IIVSR-KGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             EEEEecchheeeeeeeechheeeeE-----EEEec-cCcEEEEecCCceEEEEehh
Confidence            999999998888777422  23333     44444 79999999999999999987

>KOG0649|consensus

Probab=99.85  E-value=4.4e-19  Score=122.15  Aligned_cols=195  Identities=17%  Similarity=0.151  Sum_probs=143.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC----------ceeeE-EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG----------DPIDF-YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      |.+.++++|++|..+|+|-+..++..          .++.. .+|+++++.++|+.   .+|++|+ ||.|+-|..+...
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~   92 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEE   92 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhh
Confidence            46788999999999999999998632          12223 38999999999992   5778777 5999999875432


Q ss_pred             c------ceee--ccCC-----cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeE
Q psy11351         71 E------ATEL--AVNS-----GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL  137 (224)
Q Consensus        71 ~------~~~~--~~~~-----~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (224)
                      .      ....  ..|.     -.|+++-..| ..+-++.++.|+.++-||+++++....+.+|.+.+.++.--.....+
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi  171 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI  171 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence            1      1111  1111     2689999999 44455555589999999999999989999999999999986666788


Q ss_pred             eeeecCCCcEEEECCCCCcceecccCCccccee--eeE--EEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        138 LGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCT--MKS--CCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++|++||++++||+++++.+..++.-...+...  +..  .+... +.++|++|+ ...+.+|.+++.+.
T Consensus       172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-NEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-cCceEEecC-CCceeEEeccCCCc
Confidence            999999999999999999988873222111111  111  22222 678888876 45799999998876

>KOG1445|consensus

Probab=99.85  E-value=3.3e-20  Score=142.99  Aligned_cols=193  Identities=14%  Similarity=0.219  Sum_probs=146.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc-------eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD-------PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      .+.||.+++||.|++|.+..+.       +...+ .|...|+++.|+|-..+.|++++.|-+|++||+++.+....+.+|
T Consensus       640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH  719 (1012)
T KOG1445|consen  640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH  719 (1012)
T ss_pred             hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence            3579999999999999987542       33334 799999999999987789999999999999999999999999999


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCC----CcEEEECC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRL----PPVLYNTR  152 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~----~v~v~d~~  152 (224)
                      .+.|..++|+| +++.+++.+.||++++|..++.+.+.....  -...--.+.|.-+|+++++.+.|.    .|.+||..
T Consensus       720 tdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  720 TDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             cCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            99999999999 999999999999999999998755433221  112334578888999998877654    47888876


Q ss_pred             CC--CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        153 SS--SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       153 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +-  .++.+....-...-  +. -.+.++.+-++++|-.|..|++|.+-....
T Consensus       799 ~l~~~pl~t~~lDvaps~--Lv-P~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  799 TLDLRPLYTQVLDVAPSP--LV-PHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             hccCCcceeeeecccCcc--cc-ccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            43  34433321111000  10 123333456789999999999999877665

>KOG1009|consensus

Probab=99.84  E-value=5.3e-20  Score=134.53  Aligned_cols=178  Identities=13%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce------eeE---E-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC--------C-
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP------IDF---Y-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR--------S-   68 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~------~~~---~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------~-   68 (224)
                      +.++||+.|..|+||-++.++.      +..   + .|..+|+++.|+|+| .+|++|+.+|.+.+|-..        + 
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e  105 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTE  105 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccch
Confidence            3899999999999999875432      222   2 699999999999999 899999999999999765        2 


Q ss_pred             ----c---ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         69 ----R---EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        69 ----~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                          .   .....+.+|...|..++|+| +++++++++.|..+++||+..++....+..|...+..++|.|-++++++-+
T Consensus       106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s  184 (434)
T KOG1009|consen  106 ADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS  184 (434)
T ss_pred             hhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence                1   12345578999999999999 999999999999999999999998888889999999999999999999999


Q ss_pred             cCCCcEEEECCCCCcceecc---------c--CCcccc--------eeeeEEEEeCCCCeEEEEcC
Q psy11351        142 RRLPPVLYNTRSSSPVAQFD---------H--EGYYNS--------CTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~~---------~--~~~~~~--------~~~~~~~~~~~~~~~l~s~~  188 (224)
                      .|...+.+.+...+.+....         +  .+....        .-|..++|+| ++.+|++.+
T Consensus       185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPa  249 (434)
T KOG1009|consen  185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPA  249 (434)
T ss_pred             cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEccc
Confidence            88877777664322221110         0  111111        1255788898 688888764

>KOG1445|consensus

Probab=99.84  E-value=3e-20  Score=143.26  Aligned_cols=184  Identities=18%  Similarity=0.213  Sum_probs=145.6

Q ss_pred             EeCCCcEEEEeCCCC-ce----eeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-------cceeeccCCc
Q psy11351         13 IGNDDHVISHDMASG-DP----IDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-------EATELAVNSG   80 (224)
Q Consensus        13 ~~~dg~i~iwd~~~~-~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~   80 (224)
                      ++.-|.|-||+++.- +.    +-.+.....|+++.|.|.+...|+.+++||.|++|.+..+.       +...+..|..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            345789999999742 22    22234667899999999888999999999999999986543       4566788999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc-cee
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP-VAQ  159 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~-~~~  159 (224)
                      .|+++.|+|--.+.|++++.|-+|++||+++.+....+.+|.+.|..++|||+|+.+++.+.||++++|+.++++. +++
T Consensus       679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E  758 (1012)
T KOG1445|consen  679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE  758 (1012)
T ss_pred             eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence            9999999998889999999999999999999988889999999999999999999999999999999999987643 332


Q ss_pred             cc-c-CCcccceeeeEEEEeCCCCeEEEEcCCC----CeEEEEeCCCCC
Q psy11351        160 FD-H-EGYYNSCTMKSCCFAGTQDEYVVSGSDD----FVLYMWRVPRDD  202 (224)
Q Consensus       160 ~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~v~iw~~~~~~  202 (224)
                      -. . ..+--.+.|..      +++++++.+.|    ++|.+||.++-.
T Consensus       759 g~gpvgtRgARi~wac------dgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  759 GKGPVGTRGARILWAC------DGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CCCCccCcceeEEEEe------cCcEEEEecccccchhhhhhhhhhhcc
Confidence            21 1 11112233333      78887776655    578888876644

>KOG1034|consensus

Probab=99.84  E-value=2.8e-19  Score=127.76  Aligned_cols=186  Identities=17%  Similarity=0.290  Sum_probs=145.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCcee---eEE---eccCCeeEEEEcCC---CCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPI---DFY---LHERPVYGLSVDPS---QDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      +.-+.+++.+. ..+.+|+....--+   ..+   .|+...+.++|+-+   +..+++.|+.-|.|+|.|+.+++....+
T Consensus        53 ~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~  131 (385)
T KOG1034|consen   53 DEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY  131 (385)
T ss_pred             CCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce
Confidence            33456676664 47899988754322   223   47888899999743   3358899999999999999999999999


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee---cCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY---GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      .+|...|+.+.++|.+.+++++++.|..|++|++++..++..+.   +|.+.|.++.|+++|.++++++.|.++++|++.
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            99999999999999888999999999999999999998887776   499999999999999999999999999999997


Q ss_pred             CCCccee-------------------------c----ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        153 SSSPVAQ-------------------------F----DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       153 ~~~~~~~-------------------------~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ..+-...                         |    -|...|.++     .|   -++++++=+-++.|..|...
T Consensus       212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv-----rw---~gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV-----RW---FGDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH-----HH---HhhheeecccCceEEEEecc
Confidence            3211100                         0    022222222     22   35789998999999999873

>KOG0650|consensus

Probab=99.84  E-value=1.9e-19  Score=137.64  Aligned_cols=193  Identities=12%  Similarity=0.138  Sum_probs=149.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-----------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-----------   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------   70 (224)
                      .++..|++|++|+.||+||||.+.++.+++.+...+.|.|++|+|.+...++++..+..+.|-+..-|.           
T Consensus       407 Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell  486 (733)
T KOG0650|consen  407 SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL  486 (733)
T ss_pred             EecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence            456789999999999999999999999999999999999999999875555544444455555532221           


Q ss_pred             --------------------------cceeeccCCcCeEEEEEcCCCCCeEEEecC---CCcEEEEecCCCceeeEeecC
Q psy11351         71 --------------------------EATELAVNSGPFHAVMFNPVEARLVATANS---KDGIALYDTRKPKEVLMQYGS  121 (224)
Q Consensus        71 --------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~  121 (224)
                                                -++..-.|...|..+.|+. .|.+|++...   ...|.|+++........+...
T Consensus       487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks  565 (733)
T KOG0650|consen  487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS  565 (733)
T ss_pred             hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence                                      0112234667899999999 8999998754   356999999877666666677


Q ss_pred             CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        122 CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .+.+.++.|+|...+|++++.. .|++||+..++.++.+ .....+..     ++.+| .|+.|+.|+.|+.+..||+.-
T Consensus       566 kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~-----msihp-~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISS-----MSIHP-NGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             CCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeee-----eeecC-CCCeEEEecCCCeeEEEEccc
Confidence            8899999999999999998754 5999999988777776 33344444     55555 789999999999999999986


Q ss_pred             CC
Q psy11351        201 DD  202 (224)
Q Consensus       201 ~~  202 (224)
                      +.
T Consensus       639 ss  640 (733)
T KOG0650|consen  639 SS  640 (733)
T ss_pred             Cc
Confidence            63

>KOG1007|consensus

Probab=99.84  E-value=5.4e-19  Score=124.43  Aligned_cols=189  Identities=17%  Similarity=0.222  Sum_probs=143.6

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCcee-eEE------eccCCeeEEEEcCC-CCcEEEEecCCCEEEEEecCCcccceee-
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPI-DFY------LHERPVYGLSVDPS-QDAIFASACDDGRVLLFDTRSREEATEL-   75 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~------~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-   75 (224)
                      +++..+++-. |..|.+|+++.+..+ ...      ++....++-+|+|. ..+.+++.+ |+++..||+|+.+....+ 
T Consensus       133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh
Confidence            3445566554 889999999877652 211      46778889999982 226676665 789999999998877666 


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ..|...+..+.|+|+...+|++++.||.|++||.|..+. +..+.+|...|+++.|+|. .+++++++.|..|.+|...+
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            578889999999998888999999999999999997654 4556679999999999996 56788899999999996532


Q ss_pred             C-----------------------------Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        154 S-----------------------------SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       154 ~-----------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      -                             ..+.++ .|...|++     ++|+..+.-.+++-+.||++.|=.++.
T Consensus       291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~-----~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA-----LAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccccCcchhhHHhcccccccccccccccccceEE-----EeeccCCCeeEEEeccCceEEeecCCh
Confidence            1                             111223 35555554     667766777899999999998866553

>KOG2106|consensus

Probab=99.84  E-value=9.7e-19  Score=131.42  Aligned_cols=203  Identities=14%  Similarity=0.160  Sum_probs=153.4

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .....+.+++++.|+.+++|+  ..+++.......++.|++|+|.|  .++.|...|...+.|.++...+..-.. ..++
T Consensus       376 ~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~l  450 (626)
T KOG2106|consen  376 THPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQL  450 (626)
T ss_pred             cCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCce
Confidence            344556899999999999999  55666666678899999999997  899999999999999998665544444 7899


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      ++++|+| ++.+||.|+.|+.|++|.+..........  .+..+|+.+.|++|++++.+.+.|-.|..|....-+.+...
T Consensus       451 s~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~  529 (626)
T KOG2106|consen  451 SVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSV  529 (626)
T ss_pred             EEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccccee
Confidence            9999999 99999999999999999997655444333  25589999999999999999999999999954432222211


Q ss_pred             c-------------------cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEeeCCcee
Q psy11351        161 D-------------------HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLE  218 (224)
Q Consensus       161 ~-------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  218 (224)
                      +                   +...++.     ++-+. ..+++++|...|+|++|..+-.+.. +..+...+|+...
T Consensus       530 kDvkW~t~~c~lGF~v~g~s~~t~i~a-----~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~r-A~~he~~ghs~~v  599 (626)
T KOG2106|consen  530 KDVKWATYTCTLGFEVFGGSDGTDINA-----VARSH-CEKLLASGDDFGKVHLFSYPCSSPR-APSHEYGGHSSHV  599 (626)
T ss_pred             cceeeeeeEEEEEEEEecccCCchHHH-----hhhhh-hhhhhhccccCceEEEEccccCCCc-ccceeecccccee
Confidence            0                   1111222     22222 5678999999999999998766554 3344444777654

>KOG2106|consensus

Probab=99.84  E-value=1.9e-18  Score=129.94  Aligned_cols=183  Identities=11%  Similarity=0.163  Sum_probs=144.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-----------cc----
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-----------EA----   72 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~----   72 (224)
                      -+++|..+|.|.||+..+.+..+.. .|++.|.+++...+|  .|++|+.|+.|..||-.-.+           .+    
T Consensus       259 dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  259 DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence            4789999999999999877766554 899999999999998  56669999999999832111           00    


Q ss_pred             -------------------------eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeE
Q psy11351         73 -------------------------TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMS  127 (224)
Q Consensus        73 -------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~  127 (224)
                                               ....+|......++.+| +.+++++++.|+.+++|+   ...+.-...-..++.|
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~~~  412 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPAEC  412 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc---CCceeEEEEecCceeE
Confidence                                     02246777888999999 889999999999999999   2233333345678899


Q ss_pred             EEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        128 IRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+|.| .++.|...|...+.|.++...+..-....++     +.+.|+| +|.+|+.|+.|+.|++|.+..+...
T Consensus       413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l-----s~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~  482 (626)
T KOG2106|consen  413 ADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQL-----SVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRK  482 (626)
T ss_pred             eeccCcc-eEEEeeccceEEEEecccceeEEEEecCCce-----EEEEEcC-CCCEEEEecCCCeEEEEEECCCCcE
Confidence            9999999 9999999999999999986555444334443     3467777 7999999999999999999877653

>KOG4378|consensus

Probab=99.83  E-value=2.2e-19  Score=134.69  Aligned_cols=187  Identities=13%  Similarity=0.160  Sum_probs=147.5

Q ss_pred             EEEEeCCCcEEEEeCCCC--ceee-EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351         10 LRVIGNDDHVISHDMASG--DPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      +++.+.|..+++|.-...  +.-. .......-.|++..... .++++|+..+.|+|||++...+.+.++.|...|+++.
T Consensus        50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~  128 (673)
T KOG4378|consen   50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD  128 (673)
T ss_pred             EeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE
Confidence            444557888999975543  1111 11222355566666655 7999999999999999997777788899999999999


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-CCceeEEEEcCCCCe-EeeeecCCCcEEEECCCCCcceec--cc
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-CESCMSIRFNKAGTQ-LLGLRRRLPPVLYNTRSSSPVAQF--DH  162 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~d~~v~v~d~~~~~~~~~~--~~  162 (224)
                      ++. ...+||+++..|.|.|..+.++.....+... ...|.-+.|+|..++ |.+++.+|.|.+||+....++..+  .|
T Consensus       129 YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H  207 (673)
T KOG4378|consen  129 YNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH  207 (673)
T ss_pred             ecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence            999 8899999999999999999988776666644 455668999998775 456788999999999998888887  36


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..+...     +||+|.++.+|++.+.|..|.+||+...+.
T Consensus       208 sAP~~g-----icfspsne~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  208 SAPCRG-----ICFSPSNEALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             cCCcCc-----ceecCCccceEEEecccceEEEeecccccc
Confidence            655444     788888889999999999999999986544

>KOG1063|consensus

Probab=99.83  E-value=1.5e-18  Score=134.71  Aligned_cols=193  Identities=19%  Similarity=0.222  Sum_probs=147.8

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCc-eee--EE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc--------c-
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGD-PID--FY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--------E-   71 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~--~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------~-   71 (224)
                      .+++.+++-+..|..++|..+... ...  .. +|...|.+++|+|.| .+|++.+.|.+-+++-.-..+        + 
T Consensus       326 ~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ  404 (764)
T KOG1063|consen  326 PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQ  404 (764)
T ss_pred             CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccc
Confidence            445678888899999999943321 121  22 899999999999999 699999999887775432000        0 


Q ss_pred             c-------------------------------------------------------------------------------
Q psy11351         72 A-------------------------------------------------------------------------------   72 (224)
Q Consensus        72 ~-------------------------------------------------------------------------------   72 (224)
                      +                                                                               
T Consensus       405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence            0                                                                               


Q ss_pred             ----------------------------------eeeccCCcCeEEEEEcCCCCCeEEEecCCC-----cEEEEecCCCc
Q psy11351         73 ----------------------------------TELAVNSGPFHAVMFNPVEARLVATANSKD-----GIALYDTRKPK  113 (224)
Q Consensus        73 ----------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~  113 (224)
                                                        +++.+|...|++++.+| +++++|+++...     .|++|+..+..
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~  563 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWL  563 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchh
Confidence                                              03457888999999999 999999997543     48999999888


Q ss_pred             eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC-cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        114 EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS-PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                      ....+..|.-.|+.++|||||++|++.+.|.++.+|...... ....+.....-.. .+..|.|+| ++.+++|+|.|.+
T Consensus       564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~p-de~~FaTaSRDK~  641 (764)
T KOG1063|consen  564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR-IIWDCSWSP-DEKYFATASRDKK  641 (764)
T ss_pred             hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccce-EEEEcccCc-ccceeEEecCCce
Confidence            888889999999999999999999999999999999874332 2222221111122 345688999 6899999999999


Q ss_pred             EEEEeCCCC
Q psy11351        193 LYMWRVPRD  201 (224)
Q Consensus       193 v~iw~~~~~  201 (224)
                      |++|.....
T Consensus       642 VkVW~~~~~  650 (764)
T KOG1063|consen  642 VKVWEEPDL  650 (764)
T ss_pred             EEEEeccCc
Confidence            999999887

>KOG0290|consensus

Probab=99.83  E-value=4.6e-19  Score=124.81  Aligned_cols=177  Identities=19%  Similarity=0.303  Sum_probs=139.0

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce----eeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec---cCCc
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP----IDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA---VNSG   80 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~   80 (224)
                      +++.++|-|-+..|||++++..    ...+.|..+|++++|...+.+.|++.+.||.++++|+|..+-...+.   ....
T Consensus       164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~  243 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST  243 (364)
T ss_pred             ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence            5889999999999999999743    23349999999999999888899999999999999999876433332   1245


Q ss_pred             CeEEEEEcCCCCCeEEEecCC-CcEEEEecCCCce-eeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCC---
Q psy11351         81 PFHAVMFNPVEARLVATANSK-DGIALYDTRKPKE-VLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSS---  154 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~---  154 (224)
                      +...++|++++.+++|+-..| ..|.+.|+|.+.. +..+..|.+.|..++|.|. ...+++++.|..+.+||+.+.   
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~  323 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE  323 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence            788999999999999986655 4599999997654 4556689999999999997 568899999999999999753   


Q ss_pred             ---CcceecccCCcccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        155 ---SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                         .++..+...+.++.     +.|++..++.++.+..
T Consensus       324 ~~~dPilay~a~~EVNq-----i~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  324 NGEDPILAYTAGGEVNQ-----IQWSSSQPDWIAICFG  356 (364)
T ss_pred             CCCCchhhhhccceeee-----eeecccCCCEEEEEec
Confidence               23333345566665     5666657788887754

>KOG1188|consensus

Probab=99.83  E-value=4.8e-19  Score=127.04  Aligned_cols=149  Identities=19%  Similarity=0.269  Sum_probs=116.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE---ecc-CCeeEEEEcCCCCcEEEEec----CCCEEEEEecCCccc-ceee-
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY---LHE-RPVYGLSVDPSQDAIFASAC----DDGRVLLFDTRSREE-ATEL-   75 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~-~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-   75 (224)
                      ....+.+|+.||+||+||++.......+   ++. .+..+++.+-.+ +.+++|.    .+-.+.+||+|..+. +..+ 
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~  161 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLN  161 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhh
Confidence            5567899999999999999877655443   444 567777777555 6888774    467899999998775 5444 


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEEC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~  151 (224)
                      ..|...|++++|+|.++++|++|+.||.|.+||+.....   +.....+...|.++.|..++ +.+.+-+...+..+|++
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            689999999999999999999999999999999986532   33444578889999998776 45777777888899988


Q ss_pred             CCCC
Q psy11351        152 RSSS  155 (224)
Q Consensus       152 ~~~~  155 (224)
                      +.+.
T Consensus       242 e~~~  245 (376)
T KOG1188|consen  242 EDGS  245 (376)
T ss_pred             cCCC
Confidence            6553

>KOG0268|consensus

Probab=99.82  E-value=4e-20  Score=133.54  Aligned_cols=146  Identities=11%  Similarity=0.196  Sum_probs=126.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCcCeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPFHAVM   86 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~   86 (224)
                      .+|++|+.|+.|.|||+.++++++..-..-.-+.++|+|.. ..|.+|++|..++.+|++.-+ ++...++|.+.|.++.
T Consensus       201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd  279 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD  279 (433)
T ss_pred             hheeeeccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence            47889999999999999999998877666778899999966 789999999999999998654 6778899999999999


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      |+| .|+-+++|+.|.+|+||..+.+....... .....|.++.||.|.+++++|+.|+.|++|.....+
T Consensus       280 fsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  280 FSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             cCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            999 99999999999999999998764432221 244679999999999999999999999999875443

>KOG1063|consensus

Probab=99.81  E-value=5.4e-19  Score=137.07  Aligned_cols=167  Identities=16%  Similarity=0.265  Sum_probs=136.3

Q ss_pred             eeEEeccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcE
Q psy11351         30 IDFYLHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGI  104 (224)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  104 (224)
                      .+.++|...|++++.+|++ +++|+++..     ..|++|+..+-..+..+..|.-.|+.++|+| ++++|++.++|+++
T Consensus       519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTV  596 (764)
T ss_pred             HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceE
Confidence            3566999999999999999 899999865     4589999998888889999999999999999 99999999999999


Q ss_pred             EEEecCCCcee----eEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC--Ccceec---ccCCcccceeeeEEE
Q psy11351        105 ALYDTRKPKEV----LMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS--SPVAQF---DHEGYYNSCTMKSCC  175 (224)
Q Consensus       105 ~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~--~~~~~~---~~~~~~~~~~~~~~~  175 (224)
                      .+|........    .....|..-|+++.|+|++.++++++.|.+|++|.....  +.+..+   .+...++.+++.+..
T Consensus       597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~  676 (764)
T KOG1063|consen  597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD  676 (764)
T ss_pred             EeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence            99987543221    123469999999999999999999999999999998876  444443   466666666554432


Q ss_pred             EeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        176 FAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       176 ~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      . +..+..++.|-+.|.|.+|...
T Consensus       677 ~-~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  677 H-NEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             c-ccccceEEEEecccEEEEEecc
Confidence            2 2234578899999999999966

>KOG3881|consensus

Probab=99.81  E-value=5.8e-18  Score=123.48  Aligned_cols=190  Identities=12%  Similarity=0.074  Sum_probs=152.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc----eeeEEeccCCeeEEEEcCCCCcEEEEecCC--CEEEEEecCCcccceeeccC--
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD----PIDFYLHERPVYGLSVDPSQDAIFASACDD--GRVLLFDTRSREEATELAVN--   78 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~--   78 (224)
                      ...|++|-.+|.+.+|..+.+.    ....+.-...+..+.-++..+.++++|+..  ..++|||+++.+++..-+.-  
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence            3478899999999999998443    222333446788888888887888889998  89999999988655443211  


Q ss_pred             -------CcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         79 -------SGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        79 -------~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                             .-+++++.|-+ +  ...|++++.-+.+++||.+.+..+. .+.-.+.+++++...|.+++++++...+.+..
T Consensus       195 D~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~  273 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK  273 (412)
T ss_pred             ccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhe
Confidence                   22678899998 7  8999999999999999999776544 44457789999999999999999999999999


Q ss_pred             EECCCCCccee-c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        149 YNTRSSSPVAQ-F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       149 ~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ||+++++.... + +..+.+.++...+      ..+++++++-|+.|+|+|+++.+.
T Consensus       274 FD~r~~kl~g~~~kg~tGsirsih~hp------~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGITGSIRSIHCHP------THPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ecccCceeeccccCCccCCcceEEEcC------CCceEEeeccceeEEEeecccchh
Confidence            99999988877 4 4667777655544      688999999999999999999655

>KOG4328|consensus

Probab=99.81  E-value=1.5e-18  Score=128.84  Aligned_cols=165  Identities=16%  Similarity=0.194  Sum_probs=131.5

Q ss_pred             eccCCeeEEEEcCCCC-cEEEEecCCCEEEEEecCCcc----cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEe
Q psy11351         34 LHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSRE----EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYD  108 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d  108 (224)
                      -+...|++++|+|..+ +++++|...|+|-+||+++.+    .+..+..|..+|.++.|+|.+...+++.+.||++++-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            4789999999999886 789999999999999996433    34556789999999999998889999999999999999


Q ss_pred             cCCCce--eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc-ceec-ccCCcccceeeeEEEEeCCCCeEE
Q psy11351        109 TRKPKE--VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP-VAQF-DHEGYYNSCTMKSCCFAGTQDEYV  184 (224)
Q Consensus       109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  184 (224)
                      ++....  +............+.|+.+...++.+..=|...+||++++.. ...+ -|...|..     ++++|....+|
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s-----v~~NP~~p~~l  338 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS-----VALNPVCPWFL  338 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce-----eecCCCCchhe
Confidence            986532  222222455677888988888777777767899999998765 3334 36666665     56666678899


Q ss_pred             EEcCCCCeEEEEeCCCCCe
Q psy11351        185 VSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       185 ~s~~~d~~v~iw~~~~~~~  203 (224)
                      +|++.|++++|||++.-..
T Consensus       339 aT~s~D~T~kIWD~R~l~~  357 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRG  357 (498)
T ss_pred             eecccCcceeeeehhhhcC
Confidence            9999999999999987543

>KOG1272|consensus

Probab=99.80  E-value=7.6e-20  Score=135.95  Aligned_cols=192  Identities=15%  Similarity=0.097  Sum_probs=169.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ..+++|+.++.|+..|.|-.+|..+++....+.-...|.++.|..+. +++|++- ...++||| +.|..++-++.|. .
T Consensus       136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQ-K~y~yvYD-~~GtElHClk~~~-~  211 (545)
T KOG1272|consen  136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQ-KKYVYVYD-NNGTELHCLKRHI-R  211 (545)
T ss_pred             eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhh-hceEEEec-CCCcEEeehhhcC-c
Confidence            45789999999999999999999999988888778899999999876 7777765 57999999 4566677777654 5


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      +..+.|-| .-.+|++++..|.++--|+.+++.+..+....+.+..++-+|....+-+|...|+|.+|.....+++..+ 
T Consensus       212 v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL  290 (545)
T KOG1272|consen  212 VARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL  290 (545)
T ss_pred             hhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence            89999999 8889999999999999999999888888777888899999999999999999999999999999888777 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|.+.+.++++.+      +|+|++|.+.|..++|||++.-...
T Consensus       291 cH~g~V~siAv~~------~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  291 CHRGPVSSIAVDR------GGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             hcCCCcceEEECC------CCcEEeecccccceeEeeecccccc
Confidence            7999999877776      8999999999999999999987654

>KOG2110|consensus

Probab=99.80  E-value=4e-17  Score=118.40  Aligned_cols=143  Identities=20%  Similarity=0.272  Sum_probs=120.7

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEE--ecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFAS--ACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ++|+++-++. |.|||+++.++++++    .+...+.++.+++.+ .+++-  ....|.|.+||..+-+++..+..|++.
T Consensus        98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~  175 (391)
T KOG2110|consen   98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP  175 (391)
T ss_pred             ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence            4566666554 999999999998877    355567777777665 56664  334689999999999999999999999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCc-EEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         82 FHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      +.+++|++ +|.+|||++..|+ |++|.+.+++.+.++..  ....|.+++|+|++++|.+.+..++|++|.++.
T Consensus       176 lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  176 LAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999 9999999999998 79999999998888874  345689999999999999999999999998854

>KOG2445|consensus

Probab=99.80  E-value=1.1e-17  Score=118.63  Aligned_cols=167  Identities=15%  Similarity=0.221  Sum_probs=122.6

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----cceeeccCCcCeEEEEEc-CCCCCeEEEecCCCcEEEEe
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----EATELAVNSGPFHAVMFN-PVEARLVATANSKDGIALYD  108 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~v~i~d  108 (224)
                      +|..-|.++.|.+.| ..+++|+.|++++|||.++..    +....+.|.+.|..+.|. |.-|+.+|+++.|+++.||.
T Consensus        11 ~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             CCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            688999999999999 899999999999999975543    455678999999999985 44589999999999999997


Q ss_pred             cCC---------CceeeEeecCCCceeEEEEcCC--CCeEeeeecCCCcEEEECCCCCcc------eecc----cCCccc
Q psy11351        109 TRK---------PKEVLMQYGSCESCMSIRFNKA--GTQLLGLRRRLPPVLYNTRSSSPV------AQFD----HEGYYN  167 (224)
Q Consensus       109 ~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~d~~~~~~~------~~~~----~~~~~~  167 (224)
                      -..         ......+......|+.+.|.|.  |-.|++++.||.+|||+....-.+      .++.    ..+. +
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~-~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK-N  168 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc-c
Confidence            521         1123344457889999999996  778999999999999987543222      2221    1111 1


Q ss_pred             ceeeeEEEEeCC--CCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        168 SCTMKSCCFAGT--QDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       168 ~~~~~~~~~~~~--~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                      .....++.|+|.  ...+|+.|+.+     +.++||....+.
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~  210 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG  210 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence            112223455442  35678888766     589999887665

>KOG1009|consensus

Probab=99.80  E-value=8.5e-19  Score=128.31  Aligned_cols=161  Identities=17%  Similarity=0.267  Sum_probs=134.0

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---------ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEE
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---------ATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL  106 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i  106 (224)
                      ..++..+.|.++..+.++||+.|..|++|-++.+..         ...+..|...|+++.|+| +++++++|+.+|.+.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence            468999999998866999999999999999875442         334578999999999999 9999999999999999


Q ss_pred             EecC--------C-----C---ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccce
Q psy11351        107 YDTR--------K-----P---KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSC  169 (224)
Q Consensus       107 ~d~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~  169 (224)
                      |...        +     .   .......+|...+..++|+|+++++++++.|+.+++||+..|.....+ .|...++.+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9765        2     1   112233468899999999999999999999999999999999999888 677777764


Q ss_pred             eeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        170 TMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                           +|.| -.+++++-+.|...+.+.+...+.
T Consensus       172 -----awDp-l~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  172 -----AWDP-LNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             -----ecch-hhhhhhhhccCcccceeeeeeeee
Confidence                 4555 689999999999888887776554

>KOG1007|consensus

Probab=99.79  E-value=4.1e-18  Score=120.03  Aligned_cols=148  Identities=19%  Similarity=0.225  Sum_probs=122.4

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSG   80 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~   80 (224)
                      .++++.+++.+ |++++.||+.+.+....+  .|...|.+++|+|+...+|++|+.||.|+|||.|..+ ++..+.+|..
T Consensus       181 HHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  181 HHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             CCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence            35677777765 899999999998877766  7999999999999987789999999999999998654 7889999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc-----------------------------eeeEeecCCCceeEEEEc
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPK-----------------------------EVLMQYGSCESCMSIRFN  131 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~  131 (224)
                      .+.++.|+|...+++++|+.|..|.+|-...-.                             .+..+..|+..|++++|+
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            999999999888999999999999998543210                             122344699999999999


Q ss_pred             CCCCe-EeeeecCCCcEEEECC
Q psy11351        132 KAGTQ-LLGLRRRLPPVLYNTR  152 (224)
Q Consensus       132 ~~~~~-l~~~~~d~~v~v~d~~  152 (224)
                      .-..+ +++-+.||.+.|=.+.
T Consensus       340 sadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cCCCeeEEEeccCceEEeecCC
Confidence            86665 5667899998877664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=9.5e-17  Score=124.74  Aligned_cols=187  Identities=25%  Similarity=0.390  Sum_probs=148.7

Q ss_pred             EEEEEeC-CCcEEEEeCCC-CceeeEE-eccCCeeEEEEcCCCCcEEEEecC-CCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          9 VLRVIGN-DDHVISHDMAS-GDPIDFY-LHERPVYGLSVDPSQDAIFASACD-DGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         9 ~l~~~~~-dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +++..+. |+.+++|+... ......+ .|...|..++|+|++ ..+++++. |+.+++|++..+..+..+..|...+.+
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  203 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS  203 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence            4454444 99999999997 5555544 899999999999998 68888885 999999999998888888889999999


Q ss_pred             EEEcCCCCC-eEEEecCCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc-ceec-
Q psy11351         85 VMFNPVEAR-LVATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP-VAQF-  160 (224)
Q Consensus        85 ~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~-~~~~-  160 (224)
                      ++|+| ++. .+++++.|+.+++||.+.+.... .+..|.... ...|+|++.++++++.|+.+++|+.+.... ...+ 
T Consensus       204 ~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (466)
T COG2319         204 LAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS  281 (466)
T ss_pred             EEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence            99998 665 66665899999999988776666 466677665 448999998889999999999999987665 3333 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|...+.     .+.|.| ++..+++++.|+.+.+|+..+....
T Consensus       282 ~~~~~v~-----~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         282 GHSSSVL-----SVAFSP-DGKLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             cCCccEE-----EEEECC-CCCEEEEeeCCCcEEEEEcCCCceE
Confidence            3434433     356777 5777777888899999998887764

>KOG2394|consensus

Probab=99.79  E-value=3.3e-18  Score=129.44  Aligned_cols=199  Identities=13%  Similarity=0.173  Sum_probs=151.8

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---------   70 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------   70 (224)
                      +.+--++.|-.-|.|.+.|....+..+.+     -....|+|+.|-|.++..++.+-.+|.+.+||.....         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            33445777778889999988765444433     1357899999999888899999999999999763210         


Q ss_pred             -------------------cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEc
Q psy11351         71 -------------------EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN  131 (224)
Q Consensus        71 -------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  131 (224)
                                         ++..+.--++.|+.++|+| ++++||+.+.||.++|||..+.+.+..+...-+...|++||
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                               1112222245789999999 99999999999999999999876655555667889999999


Q ss_pred             CCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEE------------------------------EEeCCC
Q psy11351        132 KAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSC------------------------------CFAGTQ  180 (224)
Q Consensus       132 ~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~------------------------------~~~~~~  180 (224)
                      |||+|+++|++|.-|.||.....+.+..- +|...|+.++|.+-                              .++-.+
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~  421 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG  421 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence            99999999999999999999988877765 68888887776510                              000000


Q ss_pred             ------------CeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        181 ------------DEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       181 ------------~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                  .-.|.+.+.|-++.+||+....+.
T Consensus       422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             CcccccccccceEEEeecccccceEEEEecchhhcc
Confidence                        124788899999999999887664

>KOG0644|consensus

Probab=99.79  E-value=4.1e-19  Score=140.51  Aligned_cols=191  Identities=13%  Similarity=0.133  Sum_probs=143.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++.|.++++|+.|..++||..+++.+.... ||++.++.++.+..+ .++++++.|..|++|.+..+.++..+++|.+
T Consensus       197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg  275 (1113)
T KOG0644|consen  197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGAPVSVLRGHTG  275 (1113)
T ss_pred             eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCchHHHHhcccc
Confidence            45788999999999999999999999998887 999999999999887 7999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe----e-cCCCceeE--------------------------EE
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ----Y-GSCESCMS--------------------------IR  129 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----~-~~~~~v~~--------------------------~~  129 (224)
                      .|++++|+| ..    +.+.||++++||.+-. .....    . ....-+.+                          ++
T Consensus       276 avtaiafsP-~~----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~  349 (1113)
T KOG0644|consen  276 AVTAIAFSP-RA----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA  349 (1113)
T ss_pred             ceeeeccCc-cc----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence            999999999 43    7789999999998811 10000    0 00111111                          22


Q ss_pred             EcCCC-----------CeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        130 FNKAG-----------TQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       130 ~~~~~-----------~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      |....           .+.+++-.+-.+.+|++.+|...... .|...+..     +.++|-+.....+++.||...|||
T Consensus       350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yv-----Ld~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYV-----LDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceee-----eeecCCCcHhhhhccCCCceEeee
Confidence            22221           22223334445677888777776666 45544433     666776777888999999999999


Q ss_pred             CCCCCeE
Q psy11351        198 VPRDDIY  204 (224)
Q Consensus       198 ~~~~~~~  204 (224)
                      +-.|...
T Consensus       425 i~eg~pi  431 (1113)
T KOG0644|consen  425 IWEGIPI  431 (1113)
T ss_pred             cccCCcc
Confidence            9988664

>KOG1524|consensus

Probab=99.78  E-value=1.7e-17  Score=125.84  Aligned_cols=183  Identities=11%  Similarity=0.127  Sum_probs=137.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ...++.++.||.+.|.+-. ++..+.. .|.+++.+-.|+|+| .-|+++++||.|++|. ++|....++.....+|.|+
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            4578888999999999854 3444444 899999999999999 8999999999999998 5676555665667789999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCc
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGY  165 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~  165 (224)
                      +|.|+....+++.  .+.+.|=-+.....+.....|.+-|.++.|++..+.+++|++|-..++||-........-.|+-+
T Consensus       152 ~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYA  229 (737)
T ss_pred             EECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccc
Confidence            9999555555554  45677777777777888889999999999999999999999999999999753322222233333


Q ss_pred             cccee------------------------eeEEEEeCCCCeEEEEcCCCCeEEE
Q psy11351        166 YNSCT------------------------MKSCCFAGTQDEYVVSGSDDFVLYM  195 (224)
Q Consensus       166 ~~~~~------------------------~~~~~~~~~~~~~l~s~~~d~~v~i  195 (224)
                      +++++                        +..++|++ ||..++.|...|.+.+
T Consensus       230 ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  230 ITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSA-DGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeccccceeeeeeeeeeecCCCccceEEEEEcC-CCceeeccccCceEEE
Confidence            33322                        33466777 5777777777766544

>KOG2919|consensus

Probab=99.77  E-value=1.6e-17  Score=118.81  Aligned_cols=181  Identities=12%  Similarity=0.114  Sum_probs=138.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeC-CCCcee---e-----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDM-ASGDPI---D-----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA   72 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~-~~~~~~---~-----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~   72 (224)
                      +++++|++|++|. ...|+++|+ ..|..-   .     .++..+-+.|++|+|.....++.|+....+-||.-..+.+.
T Consensus       165 ~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl  243 (406)
T KOG2919|consen  165 QFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL  243 (406)
T ss_pred             EecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce
Confidence            5688999999875 678999999 444321   1     22457889999999988789999999999999998888899


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCce-eeEeecCCC-ceeEE--EEcCCCCeEeeeecCCCcE
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKE-VLMQYGSCE-SCMSI--RFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~-~~~~~~~~~-~v~~~--~~~~~~~~l~~~~~d~~v~  147 (224)
                      ..+.+|.+.|+.++|.+ +++.|.+|. .+..|..||+|..+. +..+..|.. .-..|  ...|++++|++|+.||.|+
T Consensus       244 ~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             eeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence            99999999999999999 777777776 477899999997543 334444444 33334  4468899999999999999


Q ss_pred             EEECCC-CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        148 LYNTRS-SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       148 v~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      +||+.. +.+...+ .+...++.+++.|      --.++++++..
T Consensus       323 vwdlk~~gn~~sv~~~~sd~vNgvslnP------~mpilatssGq  361 (406)
T KOG2919|consen  323 VWDLKDLGNEVSVTGNYSDTVNGVSLNP------IMPILATSSGQ  361 (406)
T ss_pred             EEecCCCCCcccccccccccccceecCc------ccceeeeccCc
Confidence            999988 6656666 4666777755444      45667776644

>KOG0649|consensus

Probab=99.77  E-value=9.5e-17  Score=110.76  Aligned_cols=179  Identities=16%  Similarity=0.153  Sum_probs=135.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce----e---eEE--ec-----cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP----I---DFY--LH-----ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~----~---~~~--~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      .+|++|+ ||.|+-|..+....    .   ...  -|     --.|+++...|.. +-++.++.|+.++-||+++|+..+
T Consensus        73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEE
Confidence            4567766 69999998754321    1   111  12     2468899999987 555566689999999999999999


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--C--------CCceeEEEEcCCCCeEeeeecC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--S--------CESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      .+++|.+-+.++.-.. ....+++|++||++++||+++.+....+..  +        ...|.+++  -+..+|++|+ .
T Consensus       151 ~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-G  226 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-G  226 (325)
T ss_pred             EEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-C
Confidence            9999999999999866 667889999999999999999988776653  1        22344444  3456777765 4


Q ss_pred             CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ..+.+|.+++.++...|..+.++..+.|        .++.+++++..+.|.-|.+..
T Consensus       227 p~lslwhLrsse~t~vfpipa~v~~v~F--------~~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPIPARVHLVDF--------VDDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             CceeEEeccCCCceEEEecccceeEeee--------ecceEEEeccccceeeeeecc
Confidence            5699999999999999987787776555        457788888888888887754

>KOG1310|consensus

Probab=99.77  E-value=4.1e-18  Score=129.47  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=132.3

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-ccCCcCeEEEEEcCCC-CCeEEEecCCCcEEEEecCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AVNSGPFHAVMFNPVE-ARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~  111 (224)
                      +|++-|+|++|+.+| .+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|-|.. .+++++|..|..|++||+..
T Consensus        48 GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            899999999999999 79999999999999999988888777 6899999999999853 56888999999999999985


Q ss_pred             Cc----------eeeEeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcceecc--c----CCcccceeeeEE
Q psy11351        112 PK----------EVLMQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPVAQFD--H----EGYYNSCTMKSC  174 (224)
Q Consensus       112 ~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~~~~~--~----~~~~~~~~~~~~  174 (224)
                      .+          .......|...|..++-.|++ +.+.++++||+++-+|++.......-.  +    .-...-+...++
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l  206 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL  206 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence            21          223334588899999999998 788899999999999998642211100  0    000112445668


Q ss_pred             EEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        175 CFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       175 ~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ..+|.+..+|+.|+.|-..++||.+
T Consensus       207 tisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  207 TISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eecCCCCceEEecCCCchhhhhhhh
Confidence            8889888999999999999999954

>KOG4227|consensus

Probab=99.77  E-value=6.9e-17  Score=118.50  Aligned_cols=196  Identities=24%  Similarity=0.368  Sum_probs=155.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccC---CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceee--
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHER---PVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATEL--   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--   75 (224)
                      +++-.+.++.+|..+++|.+.|+++.+.+..+.|..   .|+.+..+|.. +.|++.+.++.|.+||.+..+ +...+  
T Consensus       112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeee
Confidence            455667899999999999999999999998886655   99999999997 899999999999999998765 22222  


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee----cC---CCceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY----GS---CESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~----~~---~~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                      .........+.|+|..+.+|++.+..+.+.+||++.........    +.   ...-.++.|+|.|+.+++-.....-.+
T Consensus       191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~  270 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY  270 (609)
T ss_pred             cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence            23345688999999889999999999999999999765433222    11   223367899999999988877777888


Q ss_pred             EECCCCC-cceeccc--CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        149 YNTRSSS-PVAQFDH--EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       149 ~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ||+-+.+ ++..+.|  .+..+..++.+|+|..  ...+++|+.+-.|++|.+..
T Consensus       271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             eeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCC
Confidence            9987744 4445543  3677778888899974  45699999999999999864

>KOG1310|consensus

Probab=99.76  E-value=5.1e-17  Score=123.66  Aligned_cols=203  Identities=18%  Similarity=0.177  Sum_probs=148.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCC-CcEEEEecCCCEEEEEecCCc---------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQ-DAIFASACDDGRVLLFDTRSR---------   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~---------   69 (224)
                      +.+.+|.+|++||.|-.+.|||.-..++++.+  +|...|.++.|-|.. ..++++|..|..|+++|+...         
T Consensus        57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~  136 (758)
T KOG1310|consen   57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM  136 (758)
T ss_pred             eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence            45678999999999999999999988888877  899999999999853 358899999999999999742         


Q ss_pred             -ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-e---------ecCCCceeEEEEcCC-CCeE
Q psy11351         70 -EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-Q---------YGSCESCMSIRFNKA-GTQL  137 (224)
Q Consensus        70 -~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~---------~~~~~~v~~~~~~~~-~~~l  137 (224)
                       .....+..|...|..++..|.++..+.++++||.++-||+|....... .         ...--...++..+|. ..+|
T Consensus       137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l  216 (758)
T KOG1310|consen  137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL  216 (758)
T ss_pred             cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence             234455678889999999996679999999999999999997432111 1         012234678999997 4588


Q ss_pred             eeeecCCCcEEEECCCC--------C----------cceec--ccC----C----cccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        138 LGLRRRLPPVLYNTRSS--------S----------PVAQF--DHE----G----YYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~--------~----------~~~~~--~~~----~----~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      ++|+.|...++||.+..        .          ++..|  .|-    +    .+.+  ..-+.|+|....+|++-+ 
T Consensus       217 aVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~--~t~vtfnpNGtElLvs~~-  293 (758)
T KOG1310|consen  217 AVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC--CTYVTFNPNGTELLVSWG-  293 (758)
T ss_pred             EecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee--eEEEEECCCCcEEEEeeC-
Confidence            99999999999995321        1          12222  111    1    1112  334788995445556554 


Q ss_pred             CCeEEEEeCCCCCeEeee
Q psy11351        190 DFVLYMWRVPRDDIYVSS  207 (224)
Q Consensus       190 d~~v~iw~~~~~~~~~~~  207 (224)
                      .-.|+++|+..++...+.
T Consensus       294 gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  294 GEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CeEEEEEeecCCCCceee
Confidence            448999999988775333

>KOG0322|consensus

Probab=99.76  E-value=2e-17  Score=115.19  Aligned_cols=141  Identities=15%  Similarity=0.257  Sum_probs=111.9

Q ss_pred             EEEEecCCCEEEEEecCCcc----------cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce----ee
Q psy11351         51 IFASACDDGRVLLFDTRSRE----------EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE----VL  116 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~----~~  116 (224)
                      ++++|-++|.+.+||+.++.          .......|..++.++.+.+ ....=++|+.+..+..|.+.....    ..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccc
Confidence            56788899999999999873          2334457889999999988 555556777888889998864311    11


Q ss_pred             EeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEE
Q psy11351        117 MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYM  195 (224)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~i  195 (224)
                      ...-....|..+..-||++.+++++-|+.+|||..++.+++..+ -|.+.+++     ++|+| +.+++++++.|++|.+
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~-----vAfsp-d~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA-----VAFSP-DCELMAAASKDARISL  319 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE-----EEeCC-CCchhhhccCCceEEe
Confidence            12223456788999999999999999999999999999999998 47787777     45555 7899999999999999


Q ss_pred             EeC
Q psy11351        196 WRV  198 (224)
Q Consensus       196 w~~  198 (224)
                      |++
T Consensus       320 WkL  322 (323)
T KOG0322|consen  320 WKL  322 (323)
T ss_pred             eec
Confidence            986

>KOG1523|consensus

Probab=99.75  E-value=1.2e-16  Score=113.99  Aligned_cols=194  Identities=12%  Similarity=0.119  Sum_probs=153.8

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCc---eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc---ccce
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGD---PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR---EEAT   73 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~   73 (224)
                      +|.+.+.+.+|.+-+...|.||.....+   ..+++ .|...|++++|+|.. +.|++|+.|..-++|....+   ++..
T Consensus        16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~Wkptl   94 (361)
T KOG1523|consen   16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTL   94 (361)
T ss_pred             eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccce
Confidence            4677888999999999999999988766   34444 899999999999998 89999999999999998433   3455


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee----eEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV----LMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      .+..+....+++.|+| .++.|++|+....|.+|-++..+.-    +....+.+.|.+++|+|++-.|++|+.|+.++++
T Consensus        95 vLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf  173 (361)
T KOG1523|consen   95 VLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF  173 (361)
T ss_pred             eEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence            6677888999999999 9999999999999999988765432    1223467889999999999999999999999999


Q ss_pred             EC-----CC-------------CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        150 NT-----RS-------------SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       150 d~-----~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ..     +.             |.++.++ ...+.+..     +.|+| +|..|+-.+.|..+.+-|.....
T Consensus       174 SayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~-----v~fs~-sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  174 SAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG-----VLFSP-SGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceee-----eEeCC-CCCEeeEecCCCceEEeecCCCc
Confidence            63     11             1222333 23344444     66666 79999999999999998877664

>KOG0322|consensus

Probab=99.75  E-value=1.2e-17  Score=116.18  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=117.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceee----------EE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc--cc--ce
Q psy11351          9 VLRVIGNDDHVISHDMASGDPID----------FY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR--EE--AT   73 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~----------~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~--~~   73 (224)
                      ++++|.++|.+.+||+.++..+.          .. .|..+|.++.+.+.- ..=++|+.+..+..|.+...  ..  ..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccc
Confidence            57788899999999999874332          22 699999999999876 56788899999999988644  21  11


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      .+....-.+..+.+.| +++++|+++.|+.+++|..++.+++..+.-|.+.|.+++|+|+.+.+++++.|..|.+|++
T Consensus       246 e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            2222234588899999 9999999999999999999999888888889999999999999999999999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=1.7e-15  Score=117.71  Aligned_cols=192  Identities=20%  Similarity=0.307  Sum_probs=150.8

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCc-eeeEE-ecc-CCeeEEEE-cCCCCcEEEEecC-CCEEEEEecCC-cccceeecc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGD-PIDFY-LHE-RPVYGLSV-DPSQDAIFASACD-DGRVLLFDTRS-REEATELAV   77 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~-~~v~~~~~-~~~~~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~   77 (224)
                      ...+..++.++.|+.+.+|+...+. ....+ .+. ..+..+.+ ++++...++..+. |+.+.+||... ......+..
T Consensus        74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  153 (466)
T COG2319          74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG  153 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec
Confidence            4556778888899999999999886 44444 323 36777777 7877325555444 99999999998 677788889


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecC-CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCC-eEeeeecCCCcEEEECCCCC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANS-KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT-QLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~d~~~~~  155 (224)
                      |...|..++|+| ++..+++++. ++.+++|++........+..|...+.+++|+|++. .+++++.|+.+++||...+.
T Consensus       154 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         154 HSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             CcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence            999999999999 7778888875 99999999998777777777999999999999998 55555899999999988666


Q ss_pred             cce-ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        156 PVA-QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       156 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+. .+ .|....  +    ..|+| ++.++++++.|+.+++|++.....
T Consensus       233 ~~~~~~~~~~~~~--~----~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         233 LLRSTLSGHSDSV--V----SSFSP-DGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             EEeeecCCCCcce--e----EeECC-CCCEEEEecCCCcEEEeeecCCCc
Confidence            666 34 333321  1    16777 567888999999999999987765

>KOG2111|consensus

Probab=99.74  E-value=3.3e-15  Score=106.67  Aligned_cols=179  Identities=9%  Similarity=0.114  Sum_probs=136.7

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC-CcccceeeccC--CcCeEEEEEcCCCCC
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR-SREEATELAVN--SGPFHAVMFNPVEAR   93 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~   93 (224)
                      ..|.|||=...+++..+....+|.++.+.++   .+++.- .+.|++|... +.+.++.+...  .....+++-.. +..
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~  149 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKS  149 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC-Cce
Confidence            4799999777788888889999999999975   455444 5799999987 44555555432  23344444333 334


Q ss_pred             eEEE-ecCCCcEEEEecCCCce--eeEeecCCCceeEEEEcCCCCeEeeeecCCC-cEEEECCCCCcceecccCCcccce
Q psy11351         94 LVAT-ANSKDGIALYDTRKPKE--VLMQYGSCESCMSIRFNKAGTQLLGLRRRLP-PVLYNTRSSSPVAQFDHEGYYNSC  169 (224)
Q Consensus        94 ~l~~-~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~v~d~~~~~~~~~~~~~~~~~~~  169 (224)
                      +|+. |-.-|.|.|-|+...+.  +..+..|.+.|.|++++.+|..+++++..|+ |||||..+|+++.+++..  +...
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG--~d~A  227 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG--VDRA  227 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--Cchh
Confidence            4443 44568999999986544  5777889999999999999999999999998 799999999999998422  2333


Q ss_pred             eeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        170 TMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+..++|+| +..+|+++|..|+|.||.++....
T Consensus       228 ~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  228 DIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             eEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCC
Confidence            455678888 799999999999999999887543

>KOG0650|consensus

Probab=99.73  E-value=9.6e-17  Score=123.09  Aligned_cols=189  Identities=12%  Similarity=0.143  Sum_probs=150.5

Q ss_pred             CCcceEEEEEeCC---CcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          4 GDPIKVLRVIGND---DHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         4 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ...|.||++...+   ..|.|.++.......-+ ...+.|.++.|+|.. .+|+.++. ..|+|||+..+..+..+....
T Consensus       530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKKLLTGS  607 (733)
T ss_pred             ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHHHhcCC
Confidence            4668888887654   46889999877665555 566789999999998 56666664 699999999988888887778


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC------C
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT------R  152 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~------~  152 (224)
                      ..|..++.+| ++..|+.|+.|+.+..||+.-... ...+.-|...+++|+|++.-.++++|+.|+++.|+--      -
T Consensus       608 kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~  686 (733)
T KOG0650|consen  608 KWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLL  686 (733)
T ss_pred             eeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhh
Confidence            8999999999 888999999999999999986544 4445569999999999999999999999999998842      2


Q ss_pred             CCC---cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        153 SSS---PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       153 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                      ...   ++..+......+.+.+..++|+| ...+|++++.||.|++|
T Consensus       687 qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  687 QNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence            222   23344222333566677789999 68999999999999998

>KOG1587|consensus

Probab=99.73  E-value=3.9e-16  Score=122.95  Aligned_cols=192  Identities=14%  Similarity=0.137  Sum_probs=142.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCce--ee---EE--eccCCeeEEEEcCCCC-cEEEEecCCCEEEEEecCCccc-ceee--
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDP--ID---FY--LHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREE-ATEL--   75 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~--~~---~~--~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~-~~~~--   75 (224)
                      ..+++.|..+|+|.+||+..+..  ..   ..  .|..+++.+.|..+.. .-|++++.||.|..|+++.-.. ...+  
T Consensus       255 p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~  334 (555)
T KOG1587|consen  255 PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL  334 (555)
T ss_pred             cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence            46899999999999999987654  21   11  6899999999986531 3488999999999998864332 1110  


Q ss_pred             --c-------cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEe---cCCCc----e-eeEeecCCCceeEEEEcCCCCeEe
Q psy11351         76 --A-------VNSGPFHAVMFNPVEARLVATANSKDGIALYD---TRKPK----E-VLMQYGSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        76 --~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d---~~~~~----~-~~~~~~~~~~v~~~~~~~~~~~l~  138 (224)
                        .       .....+++++|.+.+.+.++.|+.+|.|.-=.   .+...    + ...+..|.++|+++.++|-+..++
T Consensus       335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f  414 (555)
T KOG1587|consen  335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF  414 (555)
T ss_pred             ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence              1       11236899999998899999999999987633   22222    1 223445889999999999987666


Q ss_pred             eeecCCCcEEEECC-CCCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        139 GLRRRLPPVLYNTR-SSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       139 ~~~~d~~v~v~d~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..+.|-++++|... ...++..+. +...     +..++|||.....|+++..||.+.+||+.....
T Consensus       415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  415 LSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             eeeccceeEeccccCCCCcchhhhhccce-----eeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence            66669999999987 666766663 3333     334888887788999999999999999987644

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=1.1e-15  Score=106.87  Aligned_cols=153  Identities=17%  Similarity=0.318  Sum_probs=106.8

Q ss_pred             eEEEEcCCCCcEEEEecC---------CCEEEEEecCCc-ccceeecc-CCcCeEEEEEcCCCCCeEEE--ecCCCcEEE
Q psy11351         40 YGLSVDPSQDAIFASACD---------DGRVLLFDTRSR-EEATELAV-NSGPFHAVMFNPVEARLVAT--ANSKDGIAL  106 (224)
Q Consensus        40 ~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~l~~--~~~dg~v~i  106 (224)
                      ..+.|+|+|..+++....         -+...+|.++.. .+...+.. ..++|.+++|+| +++.++.  |..++.+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            357889988444444431         234566666332 33444433 345799999999 6666543  445679999


Q ss_pred             EecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC---CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeE
Q psy11351        107 YDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEY  183 (224)
Q Consensus       107 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
                      ||++ .+.+..+.  ...+..+.|+|+|++|++++.+   |.+.+||.++.+.+....|..      ...++|+| +|++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~------~t~~~WsP-dGr~  157 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD------ATDVEWSP-DGRY  157 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc------EEEEEEcC-CCCE
Confidence            9997 44444443  4677889999999999998754   569999999888887775543      24588999 7999


Q ss_pred             EEEcCC------CCeEEEEeCCCCCeE
Q psy11351        184 VVSGSD------DFVLYMWRVPRDDIY  204 (224)
Q Consensus       184 l~s~~~------d~~v~iw~~~~~~~~  204 (224)
                      |++++.      |..++||+.. |++.
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             EEEEEeccceeccccEEEEEec-CeEe
Confidence            988764      7889999986 4443

>KOG1517|consensus

Probab=99.73  E-value=2.2e-16  Score=128.17  Aligned_cols=190  Identities=13%  Similarity=0.138  Sum_probs=142.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---cceeeccCCcC--
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATELAVNSGP--   81 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~--   81 (224)
                      +|++++.-..|||||.....+..-+  +-+..++++.-+-.+.+.+++|..||.|++||.+...   .+...+.|...  
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            4555555889999999988777665  5666788887654444899999999999999998654   46677888877  


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee--eEeecC---CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEV--LMQYGS---CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      |..+.+.+++-..+++|+.+|.|++||+|.....  ..+..|   .+..+++..++....+++|+. +.|+||++. |+.
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~ 1336 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQ 1336 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhh
Confidence            9999999855556999999999999999984221  122222   235899999999999999998 889999986 444


Q ss_pred             ceecc-cC----CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        157 VAQFD-HE----GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       157 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +..+. +.    ..+.  ..+++.|+| ..-++++|+.|..|.||....++.
T Consensus      1337 l~~~k~n~~F~~q~~g--s~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIG--SVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             hcccccCcccccCcCC--Ccceeeecc-hhHhhhhccCCceEEEeecCCcCC
Confidence            44442 11    1122  235678888 577899999999999998876643

>KOG4227|consensus

Probab=99.73  E-value=2.9e-16  Score=115.27  Aligned_cols=166  Identities=10%  Similarity=0.113  Sum_probs=135.8

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC------Ccccceeec-cCCcCeEEEEEcCCCCCeEEEecCCCcEEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR------SREEATELA-VNSGPFHAVMFNPVEARLVATANSKDGIAL  106 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i  106 (224)
                      +|.+.|+++.|+.++ ++|++|+.|..+++|.+.      +.+++.... .|.+.|.|++|+. .+..+++|..+++|.+
T Consensus        54 ~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   54 EHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcceeEe
Confidence            799999999999997 899999999999999985      345665554 4558999999999 8999999999999999


Q ss_pred             EecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC-cceecccCCcccceeeeEEEEeCCCCeE
Q psy11351        107 YDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS-PVAQFDHEGYYNSCTMKSCCFAGTQDEY  183 (224)
Q Consensus       107 ~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
                      .|+.+.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+... +...+-...  ..-.|..+.|+|....+
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTAEFHPETPAL  209 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceeeeecCCCcee
Confidence            99998876655443  34589999999999999999999999999998654 333331111  12246678999988899


Q ss_pred             EEEcCCCCeEEEEeCCCCCe
Q psy11351        184 VVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       184 l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |++.+..+-+.+||++..+.
T Consensus       210 i~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             EEeccccCCCCceeeccccc
Confidence            99999999999999987655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=5.3e-15  Score=112.49  Aligned_cols=193  Identities=12%  Similarity=0.226  Sum_probs=123.4

Q ss_pred             CCCCcceEEEEEe-CCCcEEEEeCCC-Cc---eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce---
Q psy11351          2 ASGDPIKVLRVIG-NDDHVISHDMAS-GD---PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT---   73 (224)
Q Consensus         2 a~~~~~~~l~~~~-~dg~i~iwd~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---   73 (224)
                      +.+++++++++++ .++.|.+|++++ +.   .+....+.....+++++|++..++++...++.|.+||+.+...+.   
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            4567788777766 488999999974 22   222233444577889999984444666777999999997643221   


Q ss_pred             ----eeccCCcCeEEEEEcCCCCCeEEEecC-CCcEEEEecCCC--c--eeeEeec------CCCceeEEEEcCCCCeEe
Q psy11351         74 ----ELAVNSGPFHAVMFNPVEARLVATANS-KDGIALYDTRKP--K--EVLMQYG------SCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        74 ----~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~--~--~~~~~~~------~~~~v~~~~~~~~~~~l~  138 (224)
                          .... ......+.|+| ++++++++.. ++.|.+||+...  +  ....+..      +......+.++|++++++
T Consensus       166 ~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        166 PAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY  243 (330)
T ss_pred             CCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence                1111 23457899999 7788777665 899999999742  2  1222211      112234688999999999


Q ss_pred             eeec-CCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCC
Q psy11351        139 GLRR-RLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVP  199 (224)
Q Consensus       139 ~~~~-d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~  199 (224)
                      ++.. ++.|.+|++........+ .+...-  .....+.++| ++++|+++. .++.|.+|+++
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDH-SGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECC-CCCEEEEEEccCCcEEEEEEc
Confidence            8854 688999998654322222 211100  0112356777 677776655 48999999875

>KOG1272|consensus

Probab=99.73  E-value=1.4e-17  Score=124.06  Aligned_cols=178  Identities=11%  Similarity=0.154  Sum_probs=145.0

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      +++|++ +..-+.|||-.. ..++.+.-...|..+.|.|.. -+|++++..|.++--|+.+|+.+..+....+.+..++-
T Consensus       183 q~~AVA-QK~y~yvYD~~G-tElHClk~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q  259 (545)
T KOG1272|consen  183 QFFAVA-QKKYVYVYDNNG-TELHCLKRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ  259 (545)
T ss_pred             HHHHhh-hhceEEEecCCC-cEEeehhhcCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence            344444 567889999764 444455445678999999998 89999999999999999999999999888899999999


Q ss_pred             cCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCccc
Q psy11351         88 NPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYN  167 (224)
Q Consensus        88 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~  167 (224)
                      +| -+-.+-+|..+|+|.+|.....+++..+..|.++|.++++.++|.|+++.+.|..++|||+++-..+.++...-+..
T Consensus       260 NP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~  338 (545)
T KOG1272|consen  260 NP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPAS  338 (545)
T ss_pred             CC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcc
Confidence            99 78899999999999999999998888999999999999999999999999999999999999887776663233333


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      .+++     |   +.-+++.+....|.||.
T Consensus       339 ~ls~-----S---qkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  339 NLSL-----S---QKGLLALSYGDHVQIWK  360 (545)
T ss_pred             cccc-----c---cccceeeecCCeeeeeh
Confidence            3333     2   23344445566899994

>KOG1523|consensus

Probab=99.72  E-value=3.6e-16  Score=111.65  Aligned_cols=161  Identities=10%  Similarity=0.073  Sum_probs=131.1

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                      ...+|+|.+|+++. +.++.+.....|.||.....+   ..++++.|...|+.++|+| ..+.|++++.|..-++|....
T Consensus         9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCC
Confidence            35789999999998 899999999999999987665   5788899999999999999 888999999999999999854


Q ss_pred             C---ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        112 P---KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       112 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      +   ++...+..+....+++.|+|.++.+++|+....|.||-.+..+--..-+|-+..-.-.+.++.|+| ++-+|++|+
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs  165 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGS  165 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceecccc
Confidence            3   345566678999999999999999999999999999877654333222333222223455688888 688999999


Q ss_pred             CCCeEEEEeC
Q psy11351        189 DDFVLYMWRV  198 (224)
Q Consensus       189 ~d~~v~iw~~  198 (224)
                      .|+..++|..
T Consensus       166 ~D~k~rVfSa  175 (361)
T KOG1523|consen  166 TDGKCRVFSA  175 (361)
T ss_pred             cCcceeEEEE
Confidence            9999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=8.4e-16  Score=120.54  Aligned_cols=183  Identities=13%  Similarity=0.113  Sum_probs=123.0

Q ss_pred             CCCcceEEEEEeCC---CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEE-ecCCCEEEEE--ecCCcccceeec
Q psy11351          3 SGDPIKVLRVIGND---DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFAS-ACDDGRVLLF--DTRSREEATELA   76 (224)
Q Consensus         3 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~   76 (224)
                      .+++|+.++..+.+   ..|++||+.+++........+....++|+|+| +.|+. .+.+|.+.||  |+.+++ ...+.
T Consensus       211 wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt  288 (429)
T PRK01742        211 WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT-PSQLT  288 (429)
T ss_pred             EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC-eEeec
Confidence            46778888877654   36999999988654443333344578999999 55555 4567876655  555554 44555


Q ss_pred             cCCcCeEEEEEcCCCCCeEE-EecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         77 VNSGPFHAVMFNPVEARLVA-TANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      .+...+....|+| +++.++ ++..++...||++...........+..  ....|+|+|++++..+.++ +.+||+.+++
T Consensus       289 ~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~  364 (429)
T PRK01742        289 SGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS  364 (429)
T ss_pred             cCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence            6666788999999 666555 555678888888754322222223333  4578999999998887755 6779998876


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      ....... ...     ....|+| ++++|+.++.++...+|++
T Consensus       365 ~~~lt~~-~~~-----~~~~~sP-dG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        365 TEVLSST-FLD-----ESPSISP-NGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             eEEecCC-CCC-----CCceECC-CCCEEEEEEcCCCceEEEE
Confidence            5432221 111     2356788 7999999888888888775

>KOG0771|consensus

Probab=99.71  E-value=4.2e-16  Score=114.79  Aligned_cols=161  Identities=12%  Similarity=0.100  Sum_probs=118.1

Q ss_pred             eEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee
Q psy11351         40 YGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY  119 (224)
Q Consensus        40 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  119 (224)
                      ..++|+++| ..+++++.||++|+|+..+...+.....|...|.++.|+| ++++|++-+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            689999998 8999999999999999888887888888999999999999 99999999999 99999999985555444


Q ss_pred             c--CCCceeEEEEcCCC---CeEee--eecCCCcEEEECCCCCcceecccCCcccce-eeeEEEEeCCCCeEEEEcCCCC
Q psy11351        120 G--SCESCMSIRFNKAG---TQLLG--LRRRLPPVLYNTRSSSPVAQFDHEGYYNSC-TMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       120 ~--~~~~v~~~~~~~~~---~~l~~--~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                      .  .......+.|+.++   .+++.  ...-+.|+.|++...+.-..+.....+... .+++++.++ +|++++.|+.||
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dG  303 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDG  303 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCC
Confidence            2  33456678888776   33332  334456777776543221111111111111 233455555 899999999999


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      .|-|++..+-+..
T Consensus       304 sVai~~~~~lq~~  316 (398)
T KOG0771|consen  304 SVAIYDAKSLQRL  316 (398)
T ss_pred             cEEEEEeceeeee
Confidence            9999999988775

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=2.4e-15  Score=105.06  Aligned_cols=135  Identities=14%  Similarity=0.258  Sum_probs=96.4

Q ss_pred             cEEEEeCCC-CceeeEE--eccCCeeEEEEcCCCCcEEE--EecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCC
Q psy11351         18 HVISHDMAS-GDPIDFY--LHERPVYGLSVDPSQDAIFA--SACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA   92 (224)
Q Consensus        18 ~i~iwd~~~-~~~~~~~--~~~~~v~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~   92 (224)
                      ...||-++. +.....+  ...++|.+++|+|++ +.|+  .|..++.|.+||++ ++.+..+.  ...++.+.|+| ++
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G  112 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DG  112 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CC
Confidence            355555532 2333333  455679999999999 5543  34567899999997 55555553  45778999999 88


Q ss_pred             CeEEEecC---CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec------CCCcEEEECCCCCcceec
Q psy11351         93 RLVATANS---KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR------RLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        93 ~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~v~d~~~~~~~~~~  160 (224)
                      +++++++.   .|.+.+||+++.+.+... .| ..++.++|+|+|++++++..      |+.++||+.. |+.+...
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRKKKKISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCEEeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            89988864   366999999977655443 33 34789999999999999764      6778999985 6555444

>KOG1517|consensus

Probab=99.71  E-value=1.7e-15  Score=123.08  Aligned_cols=192  Identities=12%  Similarity=0.149  Sum_probs=135.6

Q ss_pred             CcceEEEEEeCCCcEEEEeCC-C----CceeeEE--------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc
Q psy11351          5 DPIKVLRVIGNDDHVISHDMA-S----GDPIDFY--------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE   71 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~-~----~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~   71 (224)
                      .+..++++|+.||.||||+-- .    .+.+.-+        +-.+.-.-++|..+. .+|++++.-..|+|||....+.
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred             cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEeccccee
Confidence            345689999999999999742 2    2222211        111222446787776 4666666689999999998877


Q ss_pred             ceeec-cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEeecCCCc--eeEEEEcCCCC-eEeeeecCC
Q psy11351         72 ATELA-VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQYGSCES--CMSIRFNKAGT-QLLGLRRRL  144 (224)
Q Consensus        72 ~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~  144 (224)
                      ...+. +....++++.-+...++++++|..||.|++||.|....   +.....|...  |..+.+.+.|- .|++|+.+|
T Consensus      1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred             EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence            76664 33456788876665689999999999999999986533   3334457766  99999998765 499999999


Q ss_pred             CcEEEECCCCCcceec---cc---CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        145 PPVLYNTRSSSPVAQF---DH---EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|++||++.......+   .|   .+..+++.+     ++ +...+++|+. +.|+||++...+..
T Consensus      1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V-----H~-hapiiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTV-----HE-HAPIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred             eEEEEecccCcccccceeeeccccCccceeeee-----cc-CCCeeeecCc-ceEEEEecChhhhc
Confidence            9999999975222222   12   122444443     43 7899999998 99999999877663

>KOG1240|consensus

Probab=99.71  E-value=2.2e-15  Score=123.98  Aligned_cols=198  Identities=16%  Similarity=0.140  Sum_probs=139.7

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCc-------eeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGD-------PIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE------   70 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------   70 (224)
                      ..+.++++||.||+|++||...-.       ...++. ....+.++...+.+ +.+|.++.||.|++.++...+      
T Consensus      1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEcccccccccee
Confidence            345899999999999999986421       222332 57889999999988 899999999999999987622      


Q ss_pred             -cceeeccC-CcCeEEE-EEcCCCCC-eEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         71 -EATELAVN-SGPFHAV-MFNPVEAR-LVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        71 -~~~~~~~~-~~~i~~~-~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                       ..+....+ .+.+.+| +|...... .++.+...+.+..||+++........  ...+.|++++.+|.+++++.|+..|
T Consensus      1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred             eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence             11111111 2333333 34332334 77888889999999999875544433  3557899999999999999999999


Q ss_pred             CcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE-cC-CCCeEEEEeCCCCCeE
Q psy11351        145 PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS-GS-DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~-~d~~v~iw~~~~~~~~  204 (224)
                      .+.+||++-+.++..+.|+....-..+..+-+.| .....++ ++ ..+.|.+|++.+|.+.
T Consensus      1218 ~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~-~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP-QESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             eEEEEEeecCceeecccCcccCCcceEEeeccCC-CCceEEEecccCCCceeeeecccCcce
Confidence            9999999999999888655443222222222333 3345444 44 5789999999999663

>KOG1334|consensus

Probab=99.70  E-value=2.6e-16  Score=118.01  Aligned_cols=201  Identities=25%  Similarity=0.333  Sum_probs=149.6

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCcee-------------------------------------------------eEE
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPI-------------------------------------------------DFY   33 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------------------~~~   33 (224)
                      ++..|..+++|+.|..|.+||...++..                                                 ...
T Consensus       150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~  229 (559)
T KOG1334|consen  150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA  229 (559)
T ss_pred             ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence            4677889999999999999997654211                                                 111


Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---ccCCc---CeEEEEEcCCCCCeEEEecCCCcEEEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---AVNSG---PFHAVMFNPVEARLVATANSKDGIALY  107 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~---~i~~~~~~~~~~~~l~~~~~dg~v~i~  107 (224)
                      .|.++|.-++.-|+.+..|.+++.|+.+.-+|++.+.+...+   +.+..   ..+.++.+|.+...+++++.|..+++|
T Consensus       230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY  309 (559)
T KOG1334|consen  230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY  309 (559)
T ss_pred             cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence            478888888888888888999999999999999887754443   22333   578999999777899999999999999


Q ss_pred             ecCCCcee------eEee------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc--------ceec---ccCC
Q psy11351        108 DTRKPKEV------LMQY------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP--------VAQF---DHEG  164 (224)
Q Consensus       108 d~~~~~~~------~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~--------~~~~---~~~~  164 (224)
                      |.+.-...      ..+.      ...-.|++++|+.++.-|+++..|-.|+++....+.-        ...+   ...+
T Consensus       310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG  389 (559)
T KOG1334|consen  310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG  389 (559)
T ss_pred             cccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc
Confidence            99864321      2222      1334689999998888777777888899995432211        0011   1456


Q ss_pred             cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        165 YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.++-++..+-|..+...|+++|+.-|.|.||+-.+++.
T Consensus       390 HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  390 HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             cccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence            666666666777665789999999999999999999876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=5.1e-14  Score=107.12  Aligned_cols=197  Identities=12%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             CCCCCcceEEEEEe-CCCcEEEEeCC-CCcee--eEEeccCCeeEEEEcCCCCcEEEEec-CCCEEEEEecCCcc----c
Q psy11351          1 MASGDPIKVLRVIG-NDDHVISHDMA-SGDPI--DFYLHERPVYGLSVDPSQDAIFASAC-DDGRVLLFDTRSRE----E   71 (224)
Q Consensus         1 ~a~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~----~   71 (224)
                      |+.++++++|++++ .++.|.+|+++ +++..  ......+....++|+|++ +++++++ .++.|.+|++.+..    .
T Consensus        40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~  118 (330)
T PRK11028         40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAP  118 (330)
T ss_pred             EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence            34567788776654 57899999997 34332  222344467789999999 5665554 58999999997432    1


Q ss_pred             ceeeccCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCceeeE------eecCCCceeEEEEcCCCCeEeeeec-C
Q psy11351         72 ATELAVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKEVLM------QYGSCESCMSIRFNKAGTQLLGLRR-R  143 (224)
Q Consensus        72 ~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~-d  143 (224)
                      +..+. +......++++| +++++ ++...++.|.+||+.+...+..      ..........++|+|+|++++++.. +
T Consensus       119 ~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~  196 (330)
T PRK11028        119 IQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN  196 (330)
T ss_pred             eeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence            22222 223467789999 66666 5555679999999986432211      1112345678999999999988876 8


Q ss_pred             CCcEEEECCC--CC--cceecc-cCCcccce-eeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCCC
Q psy11351        144 LPPVLYNTRS--SS--PVAQFD-HEGYYNSC-TMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPRD  201 (224)
Q Consensus       144 ~~v~v~d~~~--~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~~  201 (224)
                      +.|.+|++..  ++  .+..+. ........ ....+.++| ++++++++. .++.|.+|++...
T Consensus       197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence            9999999974  22  222221 11110000 112366778 678777764 5789999999654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=5.8e-15  Score=115.84  Aligned_cols=176  Identities=15%  Similarity=0.143  Sum_probs=118.9

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC---CEEEEEecCCcccceeeccCCcCeEEEEEcCCCC
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD---GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA   92 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~   92 (224)
                      +.+|.+||...........|...+.+.+|+|+| +.|+.++.+   ..|++||+.+++... +....+....++|+| ++
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSP-DG  259 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSP-DG  259 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECC-CC
Confidence            468999999876654444788889999999999 677766543   479999998875322 222222344789999 77


Q ss_pred             CeEEEe-cCCCcEEEE--ecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCC-CcceecccCCccc
Q psy11351         93 RLVATA-NSKDGIALY--DTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSS-SPVAQFDHEGYYN  167 (224)
Q Consensus        93 ~~l~~~-~~dg~v~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~-~~~~~~~~~~~~~  167 (224)
                      +.|+.+ +.+|.+.||  |+.++ ....+..+...+....|+|||+.|+..+ .++...+|+++.. .....+.+.+  .
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~  336 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGG-TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--Y  336 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCC-CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--C
Confidence            776665 467776655  65554 3455556667788899999999877654 5677888876432 2222222222  1


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                           ...|+| ++++|+..+.++ +.+||+.+++..
T Consensus       337 -----~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~  366 (429)
T PRK01742        337 -----SAQISA-DGKTLVMINGDN-VVKQDLTSGSTE  366 (429)
T ss_pred             -----CccCCC-CCCEEEEEcCCC-EEEEECCCCCeE
Confidence                 246777 688887777665 556999888653

>KOG1587|consensus

Probab=99.69  E-value=2.8e-15  Score=118.17  Aligned_cols=188  Identities=10%  Similarity=0.121  Sum_probs=138.6

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce-ee-----EE-------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP-ID-----FY-------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----   70 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~-~~-----~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----   70 (224)
                      .-+++++.||.|..|+++.-.. ..     ..       .-...+++++|.+..++.|+.|+++|.|.--+....+    
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            4588888899999998764321 11     11       2245789999999999999999999999874332221    


Q ss_pred             ----cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC-CCceeeEeecCCCceeEEEEcCCCC-eEeeeecCC
Q psy11351         71 ----EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR-KPKEVLMQYGSCESCMSIRFNKAGT-QLLGLRRRL  144 (224)
Q Consensus        71 ----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  144 (224)
                          ....+..|.++|+++.++|....++.+++ |..++||... ...++..+..+...+++++|||... .++++..||
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence                13345678899999999997777777776 9999999988 5556666667778899999999854 667778899


Q ss_pred             CcEEEECCCC--CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        145 PPVLYNTRSS--SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       145 ~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .+.+||+...  +++........    ......|++ .++.|++|...|.+.+|++...
T Consensus       465 ~l~iWDLl~~~~~Pv~s~~~~~~----~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEPVLSQKVCSP----ALTRVRWSP-NGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ceehhhhhccccCCccccccccc----ccceeecCC-CCcEEEEecCCCcEEEEEcCch
Confidence            9999999754  33333322221    222345555 6999999999999999999654

>KOG3881|consensus

Probab=99.69  E-value=1.2e-15  Score=111.61  Aligned_cols=161  Identities=15%  Similarity=0.120  Sum_probs=133.4

Q ss_pred             eEEEEEeCC--CcEEEEeCCCCceeeEE----------eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCcc-cc
Q psy11351          8 KVLRVIGND--DHVISHDMASGDPIDFY----------LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSRE-EA   72 (224)
Q Consensus         8 ~~l~~~~~d--g~i~iwd~~~~~~~~~~----------~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~-~~   72 (224)
                      .++++|+..  ..++|||++..+.+..-          .-.-.++++.|.+.  . ..|+++..-+.+++||.+.++ ++
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce
Confidence            467789988  88999999987544322          23456788889876  4 789999999999999998764 67


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ..+.-.+.+++++...| +++++++|..-|.+..||++.++.+.. +.+..+.++++..+|.++++++++-|..|||+|+
T Consensus       241 ~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             eEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            77877788999999999 999999999999999999999987776 5678899999999999999999999999999999


Q ss_pred             CCCCcceecccCCccccee
Q psy11351        152 RSSSPVAQFDHEGYYNSCT  170 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~  170 (224)
                      .+.+++...-.....+.+-
T Consensus       320 ktrkll~kvYvKs~lt~il  338 (412)
T KOG3881|consen  320 KTRKLLHKVYVKSRLTFIL  338 (412)
T ss_pred             ccchhhhhhhhhccccEEE
Confidence            9977766554444444433

>KOG0642|consensus

Probab=99.68  E-value=7.2e-16  Score=117.42  Aligned_cols=167  Identities=14%  Similarity=0.240  Sum_probs=130.6

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC--------cccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--------REEATELAVNSGPFHAVMFNPVEARLVATANSKDGIA  105 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~  105 (224)
                      .|...++.+.|+|.. ..|++++.|+++++|++..        -+++.++++|.++|.|+++.+ ++..+++|+-||.|+
T Consensus       292 s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~  369 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIR  369 (577)
T ss_pred             cchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceee
Confidence            588899999999987 6999999999999999932        136788999999999999999 999999999999999


Q ss_pred             EEecCCCc----------eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc----c---------
Q psy11351        106 LYDTRKPK----------EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD----H---------  162 (224)
Q Consensus       106 i~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~----~---------  162 (224)
                      .|++....          ....+.+|.+.++.+++|+....|++++.||+++.|+.....+ ..|.    +         
T Consensus       370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~  448 (577)
T KOG0642|consen  370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT  448 (577)
T ss_pred             eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence            99665221          1234557999999999999999999999999999998765433 1110    0         


Q ss_pred             -----------------------------------CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        163 -----------------------------------EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       163 -----------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                                         .+....-.+..+.++| ...+.+++..|+.|+++|..++++.
T Consensus       449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccc
Confidence                                               0000001123355566 5688899999999999999999874

>KOG2139|consensus

Probab=99.68  E-value=1.1e-14  Score=105.92  Aligned_cols=180  Identities=16%  Similarity=0.234  Sum_probs=127.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc----cc----------c
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR----EE----------A   72 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~----------~   72 (224)
                      .-+|++..|-.|++||-+...+.... .-...|+|++|-|.+...|+.|+. +-|.+|.....    ..          +
T Consensus       111 ~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qv  189 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQV  189 (445)
T ss_pred             hhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhh
Confidence            34778889999999998874333333 445689999999998788888886 57889976421    11          1


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEecC-CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATANS-KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ....+| .+|++++|++ ++..+++++. +..|.|||..++..........+.++-+.||||+.+|+++.-|+..++|+.
T Consensus       190 l~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  190 LQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             eeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            112333 5899999999 7888888774 567999999988765555455678889999999999999999999999965


Q ss_pred             CCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEE
Q psy11351        152 RSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYM  195 (224)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~i  195 (224)
                      ....-.... -..+.+     ...+|+|....+|++.+....++-
T Consensus       268 ~q~wt~erw~lgsgrv-----qtacWspcGsfLLf~~sgsp~lys  307 (445)
T KOG2139|consen  268 NQSWTKERWILGSGRV-----QTACWSPCGSFLLFACSGSPRLYS  307 (445)
T ss_pred             cccceecceeccCCce-----eeeeecCCCCEEEEEEcCCceEEE
Confidence            433222222 233433     348899964455666665555443

>KOG1538|consensus

Probab=99.67  E-value=2.5e-14  Score=111.69  Aligned_cols=188  Identities=15%  Similarity=0.156  Sum_probs=133.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--------c
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--------A   72 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~   72 (224)
                      |..++|..|+.+. +..+.+||.+.|.....+ +|...|+|++|+.+| +.+++|+.|+.|.+|.-.-...        +
T Consensus        19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~I   96 (1081)
T KOG1538|consen   19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAI   96 (1081)
T ss_pred             EECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCee
Confidence            4556777766665 447999999999988877 999999999999999 8999999999999998642210        0


Q ss_pred             e---------------------------eeccC--CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee---c
Q psy11351         73 T---------------------------ELAVN--SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY---G  120 (224)
Q Consensus        73 ~---------------------------~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~  120 (224)
                      +                           ....|  ...+.+++|.. ++++++.|-.+|+|.+-+-. ++....+.   +
T Consensus        97 QCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg  174 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GEEKVKIERPGG  174 (1081)
T ss_pred             eEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCC-CCcceEEeCCCC
Confidence            0                           00011  23678888988 89999999999999988644 33333333   3


Q ss_pred             CCCceeEEEEcCCC-----CeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEE
Q psy11351        121 SCESCMSIRFNKAG-----TQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY  194 (224)
Q Consensus       121 ~~~~v~~~~~~~~~-----~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~  194 (224)
                      ..++|++++|+|..     ..+++..-..++..|.+. |+.+..- ...-...+     +.+.+ +|.+++.|+.|+.++
T Consensus       175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~C-----isYf~-NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCC-----ISYFT-NGEYILLGGSDKQLS  247 (1081)
T ss_pred             CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchh-----heecc-CCcEEEEccCCCceE
Confidence            77899999999973     356666667777777765 3333211 11111122     33445 799999999999999


Q ss_pred             EEeCCC
Q psy11351        195 MWRVPR  200 (224)
Q Consensus       195 iw~~~~  200 (224)
                      +|..+.
T Consensus       248 ~fTR~G  253 (1081)
T KOG1538|consen  248 LFTRDG  253 (1081)
T ss_pred             EEeecC
Confidence            996543

>KOG2321|consensus

Probab=99.67  E-value=8.9e-15  Score=112.06  Aligned_cols=192  Identities=16%  Similarity=0.321  Sum_probs=148.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA----   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----   76 (224)
                      ..+.+..-|..++....|.-+|++.|..+..+. ..+.++++..++.. .+|++|+.+|.|..||.+....+..+.    
T Consensus       140 ~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~  218 (703)
T KOG2321|consen  140 KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASS  218 (703)
T ss_pred             cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccc
Confidence            344444445555666789999999999988884 45899999999988 799999999999999999877655542    


Q ss_pred             --cCCc-----CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCC--CCeEeeeecCCCc
Q psy11351         77 --VNSG-----PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKA--GTQLLGLRRRLPP  146 (224)
Q Consensus        77 --~~~~-----~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~v  146 (224)
                        .|.+     .|+++.|+. ++-.+++|+.+|.+.|||+|+.+++..-. ...-+|..+.|.+.  ++.+++. ....+
T Consensus       219 v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~  296 (703)
T KOG2321|consen  219 VNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRIL  296 (703)
T ss_pred             cCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHh
Confidence              2333     499999998 89999999999999999999886654433 24557888999776  3445544 45669


Q ss_pred             EEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        147 VLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       147 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +|||-.+|++...+.....++.     .|+.| ++.+++++-.++.+..|=++.-.
T Consensus       297 kiWd~~~Gk~~asiEpt~~lND-----~C~~p-~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  297 KIWDECTGKPMASIEPTSDLND-----FCFVP-GSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             hhcccccCCceeeccccCCcCc-----eeeec-CCceEEEecCCCcceeEEccccC
Confidence            9999999999988866666666     55555 78888999888888877666543

>KOG1963|consensus

Probab=99.66  E-value=1.4e-14  Score=115.57  Aligned_cols=192  Identities=16%  Similarity=0.134  Sum_probs=148.5

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCC--cEEEEecCCCEEEEEecCCcccce------
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQD--AIFASACDDGRVLLFDTRSREEAT------   73 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~------   73 (224)
                      .++++++++... +.+|.||...+++++..+ +|..+++.+.+.|..+  .++++++.||.|++||...+..++      
T Consensus        24 fSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~  102 (792)
T KOG1963|consen   24 FSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL  102 (792)
T ss_pred             cccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence            356677666665 558999999999999987 8999999999998776  477799999999999986543211      


Q ss_pred             --------------------------------------------------------------------------------
Q psy11351         74 --------------------------------------------------------------------------------   73 (224)
Q Consensus        74 --------------------------------------------------------------------------------   73 (224)
                                                                                                      
T Consensus       103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~  182 (792)
T KOG1963|consen  103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCK  182 (792)
T ss_pred             ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeee
Confidence                                                                                            


Q ss_pred             --e---------------eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC--C--ceeeEeecCCCceeEEEEcC
Q psy11351         74 --E---------------LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK--P--KEVLMQYGSCESCMSIRFNK  132 (224)
Q Consensus        74 --~---------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~--~--~~~~~~~~~~~~v~~~~~~~  132 (224)
                        .               -..|...+++.+++| .++++++|..||.|.+|.=-.  .  .....+.-|...|.+++|++
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~  261 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS  261 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence              0               012334578899999 999999999999999995332  1  12333445889999999999


Q ss_pred             CCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        133 AGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       133 ~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +|.+|++|+..+.+.+|.+.++++...-+..+.+..     +.++| ++.+.+..-+|..|.+....+.+
T Consensus       262 ~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~-----i~vS~-ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  262 DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILH-----IVVSP-DSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             CCceEeecccceEEEEEeecCCCcccccccCCeeEE-----EEEcC-CCCeEEEEecCceEEEEeccchh
Confidence            999999999999999999999883333245555554     55666 78888888889999998875543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=8.3e-14  Score=109.54  Aligned_cols=191  Identities=14%  Similarity=0.051  Sum_probs=126.1

Q ss_pred             CCCCcceEEEEEeCC---CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeec
Q psy11351          2 ASGDPIKVLRVIGND---DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~   76 (224)
                      +.+++|+.++..+.+   ..|.+||+.+++......+.+...+..|+|+|..++++.+.++  .|++||+.+++. ..+.
T Consensus       210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt  288 (433)
T PRK04922        210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLT  288 (433)
T ss_pred             cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECc
Confidence            345678888877643   4699999998877655555556668899999954555655555  699999988764 4454


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEec-CCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC---CcEEEE
Q psy11351         77 VNSGPFHAVMFNPVEARLVATAN-SKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL---PPVLYN  150 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~-~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~d  150 (224)
                      .+.......+|+| +++.++..+ .+|.  +.++|+.+++. ..+..........+|+|+|++++..+.++   .|.+||
T Consensus       289 ~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d  366 (433)
T PRK04922        289 NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMD  366 (433)
T ss_pred             cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEE
Confidence            5555556789999 777666554 4555  66667666543 33333334455789999999998765433   589999


Q ss_pred             CCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC---CCeEEEEeCCCCC
Q psy11351        151 TRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD---DFVLYMWRVPRDD  202 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~v~iw~~~~~~  202 (224)
                      +.+++.. .+.+.....     ...|+| ++++++..+.   .+.|.++++..+.
T Consensus       367 ~~~g~~~-~Lt~~~~~~-----~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        367 LSTGSVR-TLTPGSLDE-----SPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CCCCCeE-ECCCCCCCC-----CceECC-CCCEEEEEEecCCceEEEEEECCCCc
Confidence            9877654 333222222     246777 6777665544   3468888886543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.4e-13  Score=108.34  Aligned_cols=175  Identities=15%  Similarity=0.118  Sum_probs=120.5

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec---CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC---DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .|.++|...........+...+.+.+|+|+| +.|+..+   .+..|.+||+.+++. ..+..+.+.+...+|+| +++.
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~  259 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRK  259 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCE
Confidence            7889998776665555788899999999999 6666554   347899999988764 34445566778899999 6665


Q ss_pred             E-EEecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CC--CcEEEECCCCCcceecccCCcccc
Q psy11351         95 V-ATANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RL--PPVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        95 l-~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      + ++.+.++.  |.+||+.+++ ...+..+........|+|||+.++..+. ++  .|+++|+.+++........+... 
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~-  337 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYS-  337 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCccc-
Confidence            5 46666655  7777888764 4455556666778999999998887663 33  57788877655433222233322 


Q ss_pred             eeeeEEEEeCCCCeEEEEcCCC---CeEEEEeCCCCC
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSDD---FVLYMWRVPRDD  202 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~d---~~v~iw~~~~~~  202 (224)
                          ...|+| +++.|+..+.+   ..|.+||+.++.
T Consensus       338 ----~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        338 ----TPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             ----CeEECC-CCCEEEEEEcCCCceEEEEEECCCCc
Confidence                256777 67777654432   478888986554

>KOG1538|consensus

Probab=99.65  E-value=1.9e-15  Score=117.84  Aligned_cols=151  Identities=13%  Similarity=0.270  Sum_probs=119.4

Q ss_pred             CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE
Q psy11351         38 PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM  117 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  117 (224)
                      .|+.++|-|+|.+++++++  ..+.+||.+.|..++++++|.+.|++++|+. ++..+++|+.|..|.+|.-.-.. . -
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG-~-L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEG-I-L   88 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccc-e-e
Confidence            7999999999965555544  5899999999999999999999999999999 99999999999999999865332 2 2


Q ss_pred             eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        118 QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      ...|.+.|.|+.|+|-...|++++-.. .-+|..... .+...+...     .+..|+|.. ||++++.|-.||+|.+=+
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK-~V~K~kss~-----R~~~CsWtn-DGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQK-SVSKHKSSS-----RIICCSWTN-DGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhh-ccccChhhh-hHHhhhhhe-----eEEEeeecC-CCcEEEEeccCceEEeec
Confidence            346999999999999999999988654 567876532 222222222     344577777 799999999999999886


Q ss_pred             CCCC
Q psy11351        198 VPRD  201 (224)
Q Consensus       198 ~~~~  201 (224)
                      -...
T Consensus       161 k~gE  164 (1081)
T KOG1538|consen  161 KNGE  164 (1081)
T ss_pred             CCCC
Confidence            4443

>KOG0974|consensus

Probab=99.65  E-value=8.3e-15  Score=118.72  Aligned_cols=186  Identities=10%  Similarity=0.199  Sum_probs=145.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCee-----EEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVY-----GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ...++.+..+..+.+||...+.......+...++     -+-++++. -++++|+.-+.|.+|+....+....+.+|++.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcceecccCCc
Confidence            4567788888899999998776555554443322     22345554 78999999999999999854444468899999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      |.++.++. ++.++++.+.|..+++|++.+.+.+. ...+|...++.+.|.|+  .+++++.|.+.++|+.. ++.+..+
T Consensus       178 iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y  253 (967)
T KOG0974|consen  178 IFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY  253 (967)
T ss_pred             eEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh
Confidence            99999999 99999999999999999999887665 56689999999999997  99999999999999654 4444455


Q ss_pred             -ccC-CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 -DHE-GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 -~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       .|. ..+..     +...+ +....+|++.|+.+++|++.....
T Consensus       254 ~~h~g~~iw~-----~~~~~-~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  254 DEHSGKGIWK-----IAVPI-GVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             hhhhhcceeE-----EEEcC-CceEEEeeccCcchhhhhhhcccc
Confidence             343 33444     34443 688899999999999999876533

>KOG4547|consensus

Probab=99.65  E-value=5.5e-14  Score=107.82  Aligned_cols=193  Identities=12%  Similarity=0.158  Sum_probs=155.7

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE----eccCCeeEEEEc------C-------------CCCcEEEEecCCCE
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY----LHERPVYGLSVD------P-------------SQDAIFASACDDGR   60 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~------~-------------~~~~~l~s~~~d~~   60 (224)
                      .++..++|....||.+|+||...++....+    .-++..++..|.      |             .+-..++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            466789999999999999999988876655    234555666662      2             11147888999999


Q ss_pred             EEEEecCCcccceeec--cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEe
Q psy11351         61 VLLFDTRSREEATELA--VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        61 i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (224)
                      |.+|++..++....+.  .|.+.+.++.++. +-..|.+++.|+.+..|+....+...........+.+++.+|||..++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            9999999998777664  6889999999998 888999999999999999998888888888888999999999999999


Q ss_pred             eeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEE-cCCCCeEEEEeCCC
Q psy11351        139 GLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVS-GSDDFVLYMWRVPR  200 (224)
Q Consensus       139 ~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~v~iw~~~~  200 (224)
                      +++  +.|++||+++++.+..| +|.+.++.+.|... +....|.++++ ...+..+.+|-+..
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe-ccccccceeeeccccccceeEEEEEc
Confidence            886  57999999999999999 78999998887753 33322555554 45567788887765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.3e-13  Score=108.11  Aligned_cols=191  Identities=9%  Similarity=0.019  Sum_probs=123.6

Q ss_pred             CCCcceEEEEEe---CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeecc
Q psy11351          3 SGDPIKVLRVIG---NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAV   77 (224)
Q Consensus         3 ~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~   77 (224)
                      .+++|+.|+..+   .+..|.+|++.+++........+.+....|+|+|..++++.+.++  .|.+||+.+++.. .+..
T Consensus       206 wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~  284 (429)
T PRK03629        206 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTD  284 (429)
T ss_pred             EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccC
Confidence            456778777654   245799999998876554444455667899999944444545454  5889999887644 3434


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecC-CCcEEEE--ecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC---CCcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANS-KDGIALY--DTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~-dg~v~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~d~  151 (224)
                      +...+....|+| +++.|+..+. ++...+|  |+..++ ...+...........|+|+|++++..+.+   ..|.+||+
T Consensus       285 ~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl  362 (429)
T PRK03629        285 GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  362 (429)
T ss_pred             CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence            445678899999 7776665544 4444555  665553 33444444456678999999998876543   34888999


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC---eEEEEeCCCCCe
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF---VLYMWRVPRDDI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~v~iw~~~~~~~  203 (224)
                      .+++.. .+.......     ...|+| |+++|+..+.++   .+.++++..+..
T Consensus       363 ~~g~~~-~Lt~~~~~~-----~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~~  410 (429)
T PRK03629        363 ATGGVQ-VLTDTFLDE-----TPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK  410 (429)
T ss_pred             CCCCeE-EeCCCCCCC-----CceECC-CCCEEEEEEcCCCceEEEEEECCCCCe
Confidence            877543 332111111     256777 788888777665   377788755443

>KOG2321|consensus

Probab=99.64  E-value=3.6e-14  Score=108.78  Aligned_cols=197  Identities=17%  Similarity=0.181  Sum_probs=141.2

Q ss_pred             CCCCcceEE-EEEeCCCcEEEEeCCCCce----------eeE------------------E------------eccCCee
Q psy11351          2 ASGDPIKVL-RVIGNDDHVISHDMASGDP----------IDF------------------Y------------LHERPVY   40 (224)
Q Consensus         2 a~~~~~~~l-~~~~~dg~i~iwd~~~~~~----------~~~------------------~------------~~~~~v~   40 (224)
                      ..+++|+|+ |+|..-..|++||+..-..          +..                  +            .....-.
T Consensus        58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR  137 (703)
T KOG2321|consen   58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR  137 (703)
T ss_pred             EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCc
Confidence            456788864 5677788999999875321          100                  0            0112233


Q ss_pred             EEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-
Q psy11351         41 GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-  119 (224)
Q Consensus        41 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-  119 (224)
                      +++++.-.-.+++ ++....|+-++++.|..+..+....+.++++..++ -..+|++|+.+|.|..||.|....+..+. 
T Consensus       138 Dm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  138 DMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             cccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence            4444432213444 44456888889999999888888888999999999 78899999999999999999765544433 


Q ss_pred             -----cCC-----CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCC-CeEEEEcC
Q psy11351        120 -----GSC-----ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQ-DEYVVSGS  188 (224)
Q Consensus       120 -----~~~-----~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~  188 (224)
                           .|.     ..|+++.|+.+|-.+++|..+|.+.+||+++.+++..-.|...+   .+..+.|.+.+ ++.+++. 
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~---pi~~l~~~~~~~q~~v~S~-  291 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL---PIKKLDWQDTDQQNKVVSM-  291 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc---ceeeecccccCCCceEEec-
Confidence                 122     34999999999999999999999999999999998887665443   34446665533 3455554 


Q ss_pred             CCCeEEEEeCCCCCeE
Q psy11351        189 DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       189 ~d~~v~iw~~~~~~~~  204 (224)
                      ....++|||-.+|+..
T Consensus       292 Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  292 DKRILKIWDECTGKPM  307 (703)
T ss_pred             chHHhhhcccccCCce
Confidence            4568899999999874

>KOG2394|consensus

Probab=99.63  E-value=9.8e-15  Score=110.98  Aligned_cols=95  Identities=17%  Similarity=0.307  Sum_probs=87.6

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV  115 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  115 (224)
                      .+.|+..+|+||| ++||+.+.||.++|+|..+.+.+..++..-+...|++|+| +++++++|++|..|.||.+...+.+
T Consensus       290 ~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  290 EGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEE
Confidence            4689999999998 8999999999999999999988877777778899999999 9999999999999999999988888


Q ss_pred             eEeecCCCceeEEEEcC
Q psy11351        116 LMQYGSCESCMSIRFNK  132 (224)
Q Consensus       116 ~~~~~~~~~v~~~~~~~  132 (224)
                      ..-.+|++.|..|+|+|
T Consensus       368 ARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EeccccccceeeEeecc
Confidence            77788999999999994

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.1e-13  Score=108.76  Aligned_cols=178  Identities=10%  Similarity=0.056  Sum_probs=119.2

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecC---CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCC
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD---DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR   93 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~   93 (224)
                      .+|.+||...........+...+.+..|+|++ +.|+..+.   +..|.+||+.+++.. .+....+...+..|+| +++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~  260 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGR  260 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCC
Confidence            36999999766665555777889999999999 67766553   347999999877643 3333344556789999 666


Q ss_pred             eE-EEecCCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCC--cEEEECCCCCcceecccCCccc
Q psy11351         94 LV-ATANSKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLP--PVLYNTRSSSPVAQFDHEGYYN  167 (224)
Q Consensus        94 ~l-~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--v~v~d~~~~~~~~~~~~~~~~~  167 (224)
                      .+ ++.+.+|  .|.+||+.+++ ...+..+.......+|+|||+.|+..+. ++.  |+++|+.+++............
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~  339 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNA  339 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCcc
Confidence            55 4555555  59999998775 3445555555677899999998887663 344  6666776665332222221111


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCC---CeEEEEeCCCCCeE
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDD---FVLYMWRVPRDDIY  204 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d---~~v~iw~~~~~~~~  204 (224)
                           ...|+| ++++++..+.+   ..|.+||+.+++..
T Consensus       340 -----~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        340 -----RASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             -----CEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE
Confidence                 257888 67777654333   26999999887653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.8e-13  Score=106.66  Aligned_cols=191  Identities=9%  Similarity=0.042  Sum_probs=127.4

Q ss_pred             CCCcceEEEEEeC---CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCE--EEEEecCCcccceeecc
Q psy11351          3 SGDPIKVLRVIGN---DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR--VLLFDTRSREEATELAV   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~   77 (224)
                      .+++|+.|+..+.   +..|.+||+.+++......+.+.+...+|+|+|..++++.+.++.  |.+||+.+++. ..+..
T Consensus       209 wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~  287 (435)
T PRK05137        209 FSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTD  287 (435)
T ss_pred             ECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccC
Confidence            3567787777653   468999999998876555677788899999999545556666655  77778887664 44555


Q ss_pred             CCcCeEEEEEcCCCCCeEEEec-CCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC---CCcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVATAN-SKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~-~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~d~  151 (224)
                      +........|+| +++.++..+ .+|  .|.++|+..++ ...+......+....|+|+|+.|+....+   ..|.+||+
T Consensus       288 ~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        288 SPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             CCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            555667889999 777666554 333  57788877553 34444445556778999999999876543   35788887


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC-C-----CeEEEEeCCCCCe
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD-D-----FVLYMWRVPRDDI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d-----~~v~iw~~~~~~~  203 (224)
                      .++. ...+......     ....|+| +++.|+..+. .     ..++++|+..++.
T Consensus       366 ~~~~-~~~lt~~~~~-----~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        366 DGSG-ERILTSGFLV-----EGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCCc-eEeccCCCCC-----CCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            6543 3333222222     2357788 6776654332 2     3688888877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.8e-13  Score=104.10  Aligned_cols=177  Identities=8%  Similarity=0.010  Sum_probs=116.3

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec---CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC---DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .|.++|...........+...+...+|+|+| +.|+..+   .+..|.+||+.+++... +....+......|+| +++.
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSK  256 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCE
Confidence            6999999876665555677789999999999 6665432   34689999998876322 222233455789999 7766


Q ss_pred             EEE-ecCCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-CC--cEEEECCCCCcceecccCCcccc
Q psy11351         95 VAT-ANSKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-LP--PVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        95 l~~-~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      |+. .+.+|  .|.+||+.+++. ..+..+...+....|+|+|+.|+..+.+ +.  |+++|+.+++............ 
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-  334 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-  334 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCcc-
Confidence            654 34455  488899987643 4444455567889999999988776654 44  4445666654432222222222 


Q ss_pred             eeeeEEEEeCCCCeEEEEcCC-C--CeEEEEeCCCCCeE
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSD-D--FVLYMWRVPRDDIY  204 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~-d--~~v~iw~~~~~~~~  204 (224)
                          ...|+| ++++|+..+. +  ..|.+||+.+++..
T Consensus       335 ----~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        335 ----DADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             ----CEEECC-CCCEEEEEEccCCCceEEEEECCCCCeE
Confidence                256777 6777765443 2  46889999888653

>KOG0644|consensus

Probab=99.62  E-value=8.6e-16  Score=122.11  Aligned_cols=114  Identities=15%  Similarity=0.202  Sum_probs=107.3

Q ss_pred             EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         33 YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      .+|..+|+|..|...| .++++|+.|..++||..++..+.....+|++.|+.++.+. +..++++++.|..|++|.++.+
T Consensus       187 lgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             Hhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCC
Confidence            3899999999999999 8999999999999999999999999999999999999998 8889999999999999999999


Q ss_pred             ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351        113 KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      ..+..+.+|.+.|++++|+|-.    +.+.||++++||.+
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            8888889999999999999954    67889999999987

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.2e-13  Score=106.89  Aligned_cols=177  Identities=13%  Similarity=0.096  Sum_probs=114.9

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecC---CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCC
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD---DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR   93 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~   93 (224)
                      ..|.++|...........+...+.+.+|+|+| +.|+..+.   ...|.+||+.+++.. .+....+.+....|+| +++
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~  252 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSP-DGR  252 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECC-CCC
Confidence            46778887554444445778889999999999 66665543   246999999888643 2333345567899999 666


Q ss_pred             eEE-EecCCCcEEEEec--CCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCCcEEEEC--CCCCcceecccCCccc
Q psy11351         94 LVA-TANSKDGIALYDT--RKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLPPVLYNT--RSSSPVAQFDHEGYYN  167 (224)
Q Consensus        94 ~l~-~~~~dg~v~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~--~~~~~~~~~~~~~~~~  167 (224)
                      .++ +.+.+|...+|.+  ..+ ....+..+........|+|||+.|+..+. ++...+|.+  .+++............
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~  331 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT  331 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC
Confidence            554 6677887666654  433 34445555555677899999998876654 456666654  4443222221111111


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCCC---eEEEEeCCCCCe
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDDF---VLYMWRVPRDDI  203 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d~---~v~iw~~~~~~~  203 (224)
                           ...|+| ++++|+..+.++   .|.+||+.+++.
T Consensus       332 -----~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        332 -----SPRISP-DGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             -----ceEECC-CCCEEEEEEccCCcEEEEEEECCCCCe
Confidence                 256888 688877655443   699999988765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7e-13  Score=104.05  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=119.5

Q ss_pred             CCCcceEEEEEeCC---CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEec--CCcccceeecc
Q psy11351          3 SGDPIKVLRVIGND---DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDT--RSREEATELAV   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~   77 (224)
                      .+++|+.++..+.+   ..|.+||+.+++........+......|+|+|..++++.+.++...||.+  ..+. ...+..
T Consensus       203 wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~  281 (427)
T PRK02889        203 WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ  281 (427)
T ss_pred             EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC
Confidence            45677888776643   35999999998876555455667789999999544456788887777655  3333 445555


Q ss_pred             CCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecC--CCceeeEeecCCCceeEEEEcCCCCeEeeeecCC---CcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVATAN-SKDGIALYDTR--KPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL---PPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~d~  151 (224)
                      +........|+| +++.++..+ .+|...+|.+.  .++ ...+..........+|+|+|++++..+.++   .|.+||+
T Consensus       282 ~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        282 SSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             CCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            555567788999 777666444 45666666553  333 223322333445678999999998776554   5999999


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-C--eEEEEeCCC
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-F--VLYMWRVPR  200 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~--~v~iw~~~~  200 (224)
                      .+++... +.......     ...|+| +++.|+..+.+ |  .+.+.++..
T Consensus       360 ~~g~~~~-lt~~~~~~-----~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        360 ATGQVTA-LTDTTRDE-----SPSFAP-NGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             CCCCeEE-ccCCCCcc-----CceECC-CCCEEEEEEecCCCEEEEEEECCC
Confidence            8876443 32222212     257888 57766555433 3  455666643

>KOG2111|consensus

Probab=99.59  E-value=1.6e-12  Score=93.23  Aligned_cols=142  Identities=15%  Similarity=0.234  Sum_probs=109.0

Q ss_pred             EEEEeCCCcEEEEeCCCC-ceeeEE---eccCCeeEEEEcCCCCcEEE-EecCCCEEEEEecCCccc--ceeeccCCcCe
Q psy11351         10 LRVIGNDDHVISHDMASG-DPIDFY---LHERPVYGLSVDPSQDAIFA-SACDDGRVLLFDTRSREE--ATELAVNSGPF   82 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~-~~~~~~---~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i   82 (224)
                      +++. ..+.|.||...+. +.++.+   .......+++-+... .+|+ =|-.-|.|.|-|+...+.  ...+..|.+.|
T Consensus       107 iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~I  184 (346)
T KOG2111|consen  107 IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDI  184 (346)
T ss_pred             EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCce
Confidence            4443 3668999998843 444444   223344443333222 3333 255679999999987665  47789999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCc-EEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         83 HAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .|++.+. .|.++||+|..|+ |+|||..++..+.++..  ....|.+++|||++.+|++++..|+++++.++..
T Consensus       185 acv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  185 ACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999 8999999999998 79999999998888774  5568999999999999999999999999998653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.59  E-value=1.4e-12  Score=102.32  Aligned_cols=190  Identities=14%  Similarity=0.120  Sum_probs=124.1

Q ss_pred             CCCCcceEEEEEeCC---CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeec
Q psy11351          2 ASGDPIKVLRVIGND---DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~   76 (224)
                      +.+++|++|+.++.+   ..|++||+.+++......+...+.+++|+|++..++++.+.++  .|++||+.+++. ..+.
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~  274 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLT  274 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECC
Confidence            346678888877644   4799999998876665566677788999999944555555554  588889887653 3344


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEec-CCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC---CcEEEE
Q psy11351         77 VNSGPFHAVMFNPVEARLVATAN-SKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL---PPVLYN  150 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~-~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~d  150 (224)
                      .+........|+| +++.|+..+ .++  .|.++|+.+++ ...+..+...+....|+|+|++++..+.++   .|.+||
T Consensus       275 ~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d  352 (417)
T TIGR02800       275 NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD  352 (417)
T ss_pred             CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence            4444455778999 777665543 344  47777877664 334444556677889999999999887765   688999


Q ss_pred             CCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC---eEEEEeCCCC
Q psy11351        151 TRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF---VLYMWRVPRD  201 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~v~iw~~~~~  201 (224)
                      +.++.. ..+.......     ...|+| +++.|+..+.++   .+++.+....
T Consensus       353 ~~~~~~-~~l~~~~~~~-----~p~~sp-dg~~l~~~~~~~~~~~l~~~~~~g~  399 (417)
T TIGR02800       353 LDGGGE-RVLTDTGLDE-----SPSFAP-NGRMILYATTRGGRGVLGLVSTDGR  399 (417)
T ss_pred             CCCCCe-EEccCCCCCC-----CceECC-CCCEEEEEEeCCCcEEEEEEECCCc
Confidence            887543 2222122211     246777 577666555443   4566665443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1524|consensus

Probab=99.59  E-value=5.2e-14  Score=107.26  Aligned_cols=161  Identities=15%  Similarity=0.253  Sum_probs=120.3

Q ss_pred             cEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEE
Q psy11351         50 AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIR  129 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~  129 (224)
                      ..|+.++.||.+.|.+ +.++..+.+..|.+.+.+-.|+| ++.-|+++++||.|++|.- ++-....+.....+|+|++
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence            5788889999999987 55777778899999999999999 8899999999999999984 3433333445678999999


Q ss_pred             EcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeee
Q psy11351        130 FNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD  208 (224)
Q Consensus       130 ~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~  208 (224)
                      |.|+.+.++-+.. +.+.+=.+.....+-.+ .|.+-+.+     +.|++ ..+++++|++|-..++||-..........
T Consensus       153 W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~-----~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~  225 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLS-----LSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAA  225 (737)
T ss_pred             ECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEE-----eecCc-cccceeecCCceeEEeecccCcccccCCh
Confidence            9999877666543 45666666655555555 57777655     66666 68999999999999999987655543333


Q ss_pred             eeEeeCCceeEEEee
Q psy11351        209 IYVCRHGSLEVSILP  223 (224)
Q Consensus       209 ~~~~~~~~~~~~~~p  223 (224)
                      +.   |+.-.+++.|
T Consensus       226 ~e---y~ITSva~np  237 (737)
T KOG1524|consen  226 EE---YAITSVAFNP  237 (737)
T ss_pred             hc---cceeeeeecc
Confidence            32   5555555544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.59  E-value=1e-12  Score=103.15  Aligned_cols=176  Identities=10%  Similarity=0.087  Sum_probs=118.3

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC---CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD---GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .|.++|....+......+...+...+|+|++ +.|+.+..+   ..|++||+.+++.. .+..+.+.+.+++|+| +++.
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~sp-Dg~~  247 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSP-DGSK  247 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECC-CCCE
Confidence            5888888766665555777789999999999 666665433   58999999887643 2334455667899999 6665


Q ss_pred             E-EEecCCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-C--CcEEEECCCCCcceecccCCcccc
Q psy11351         95 V-ATANSKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-L--PPVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        95 l-~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      | ++.+.++  .|.+||+.+++ ...+..+........|+|+|+.|+..+.. +  .|+++|+.+++............ 
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~-  325 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA-  325 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc-
Confidence            5 4555544  48888988764 34444444455677999999988766543 3  47777887665432222222222 


Q ss_pred             eeeeEEEEeCCCCeEEEEcCCCC---eEEEEeCCCCCe
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSDDF---VLYMWRVPRDDI  203 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~d~---~v~iw~~~~~~~  203 (224)
                          ...|+| ++++++..+.++   .|.+||+.++..
T Consensus       326 ----~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       326 ----SPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             ----CeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence                256777 677777766665   889999887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280|consensus

Probab=99.58  E-value=1.6e-13  Score=97.33  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=115.8

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceee--EE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-ccccee-eccCC
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPID--FY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-REEATE-LAVNS   79 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-~~~~~   79 (224)
                      ..+..++++..+|.+.+-+........  .. .|+-++.-..|+...++++.+|+.|+.+..||+|. ++.+.. .+.|.
T Consensus       131 ~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~  210 (339)
T KOG0280|consen  131 TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT  210 (339)
T ss_pred             ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee
Confidence            344557888888888866655544433  33 79999999999988889999999999999999994 333333 56788


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCC--CeEeeeecCCCcEEEECCCCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG--TQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      ..|.+|.-+|..+.++++|+.|..|++||.|+-.++..-..-.+.|+.+.++|.-  ..|+++-.+| .+|.+...+.
T Consensus       211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~  287 (339)
T KOG0280|consen  211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKV  287 (339)
T ss_pred             cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccc
Confidence            8999999998789999999999999999999766665555567899999999963  3444444455 7777776543

>KOG1963|consensus

Probab=99.57  E-value=1.2e-12  Score=104.74  Aligned_cols=196  Identities=8%  Similarity=0.047  Sum_probs=145.9

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeE-----EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC--cc--ccee
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDF-----YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--RE--EATE   74 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~--~~~~   74 (224)
                      ++.|++.... .+..+.+|+.+++.....     ..|.-.+++.+++|.+ .++++|..||.|.+|.--.  +.  ....
T Consensus       169 ~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~  246 (792)
T KOG1963|consen  169 NNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTL  246 (792)
T ss_pred             cCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceE
Confidence            4445544444 466799999887552211     1577789999999998 8999999999999996432  21  2455


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      +.-|..+|+++.|++ ++.+|++|+..|.+-+|.+.+++ ..-+..-.++|..+.++||+.+.+....|+.|.+....+.
T Consensus       247 lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  247 LHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             EEecccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            677889999999999 99999999999999999999986 4444557789999999999999999999999999987665


Q ss_pred             CcceecccCCcc-------cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQFDHEGYY-------NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .....+.+-.+.       ..--..-+++.| ..+.++-.+..|.|.+||+.+.+..
T Consensus       325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             hhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccccee
Confidence            544444211111       111122356666 4566777788999999999887664

>KOG1064|consensus

Probab=99.56  E-value=2.9e-14  Score=121.42  Aligned_cols=180  Identities=17%  Similarity=0.235  Sum_probs=146.7

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      .....+.+||+.||.|++|....++.+..+  .....|+.+.|+.+| +.+..+..||.+.+|... .++....+.|...
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKA 2294 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-CcceeccccCCcc
Confidence            344568899999999999999998888766  334899999999999 789999999999999987 6667777888888


Q ss_pred             eEEEEEcCCCCCeEEEec---CCCcEEEEecCCC-ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         82 FHAVMFNPVEARLVATAN---SKDGIALYDTRKP-KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ..++.|-.   ..+++++   .++.+.+||.... ........|.+.++++++-|..+.|++|+.+|.|++||++..++.
T Consensus      2295 ~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2295 LSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             ccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence            88888865   5666653   5788999997633 222222679999999999999999999999999999999988777


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..+..             +.  ...++++|+..|.++||++..-..
T Consensus      2372 h~~~~-------------~~--~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2372 HTFQA-------------LD--TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             HHhhh-------------hh--hhheeeccCcccceEEEEccccch
Confidence            76632             11  367899999999999999987644

>KOG0280|consensus

Probab=99.55  E-value=7.3e-13  Score=94.00  Aligned_cols=189  Identities=11%  Similarity=-0.015  Sum_probs=132.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-e-----c-cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc--cceeeccCC
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-L-----H-ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--EATELAVNS   79 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-----~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~   79 (224)
                      .++-+..+|.|.++.....+....+ +     . .....++.|++.+ ..++++..+|.+.+-+.....  .++.++.|+
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He  165 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHE  165 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccc
Confidence            4556667778888876543322222 1     1 1135678899988 678888889999866654443  345789999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeE-eecCCCceeEEEEcC-CCCeEeeeecCCCcEEEECC-CCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLM-QYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTR-SSS  155 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~-~~~  155 (224)
                      -++....|+..+++++.+|+.|+.+..||+|.++. +.. ...|...|.++.-+| .+.++++|+.|..|++||.+ -++
T Consensus       166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            99999999988899999999999999999995432 222 234888999998876 47799999999999999999 467


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++..-...+.|..     ++++|.....++.+..-.-.+|-+.+.+..
T Consensus       246 Pl~~~~v~GGVWR-----i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~  288 (339)
T KOG0280|consen  246 PLFKAKVGGGVWR-----IKHHPEIFHRLLAACMHNGAKILDSSDKVL  288 (339)
T ss_pred             ccccCccccceEE-----EEecchhhhHHHHHHHhcCceEEEeccccc
Confidence            7766655566654     556664333333333333356666655433

>KOG4497|consensus

Probab=99.53  E-value=1.7e-13  Score=98.75  Aligned_cols=195  Identities=12%  Similarity=0.106  Sum_probs=139.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      +++.|+++|+++.- .+.|-|.++-+....+..-..|.-+.|..+....|..+..|+.|.+|++...+-...+.....++
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl   94 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL   94 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence            46789999999866 78899999888777665556788899998875667778889999999999988888888888899


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCC---cEE-----------
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLP---PVL-----------  148 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~---v~v-----------  148 (224)
                      .+++|+|++..++.+...+-+|.+|.+.+.+. ..+...+..+..++|+|+|++.+..+....   +.+           
T Consensus        95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~  173 (447)
T KOG4497|consen   95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE  173 (447)
T ss_pred             eeeeECCCcceEeeeecceeEEEEEEecccee-EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence            99999994446777788899999999987644 333334556688999999999887654322   111           


Q ss_pred             EECCC-----------CCcceecc--cCCc----ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        149 YNTRS-----------SSPVAQFD--HEGY----YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       149 ~d~~~-----------~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +++.+           |..+..+.  .+-.    -.+..+....|+| .+++|+.|+.|+.+++.+--+
T Consensus       174 f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  174 FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             cCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceee
Confidence            11111           11111110  0000    0112344578888 589999999999998865433

>KOG1354|consensus

Probab=99.53  E-value=1.4e-13  Score=99.67  Aligned_cols=193  Identities=21%  Similarity=0.348  Sum_probs=135.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc-----------------------------------eeeEE--eccCCeeEEEEcCCCC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD-----------------------------------PIDFY--LHERPVYGLSVDPSQD   49 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~-----------------------------------~~~~~--~~~~~v~~~~~~~~~~   49 (224)
                      ...++....|.+|++|.+....                                   +.+.+  .|+..|+++.++.|. 
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-  176 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-  176 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-
Confidence            3456666789999999874211                                   22333  588899999999998 


Q ss_pred             cEEEEecCCCEEEEEecCCccc---ceeeccC-----CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee------
Q psy11351         50 AIFASACDDGRVLLFDTRSREE---ATELAVN-----SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV------  115 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~------  115 (224)
                      ..++++. |=.|.+|+++-...   +..++.+     ..-|++..|+|...+.++-.+..|.|++-|+|.....      
T Consensus       177 Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  177 ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            6777765 78999999864332   2222222     3468999999988899999999999999999953211      


Q ss_pred             eEe----------ecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC-CCCCcceecc-cCCc---cc-----c--eeeeE
Q psy11351        116 LMQ----------YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT-RSSSPVAQFD-HEGY---YN-----S--CTMKS  173 (224)
Q Consensus       116 ~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~-~~~~~~~~~~-~~~~---~~-----~--~~~~~  173 (224)
                      ...          .+--..|..+.|+++|+|+++-.. -+|++||+ ...+++..+. |..-   ..     .  ..-..
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence            111          112346788999999999998653 46999999 4556666552 2111   10     0  11235


Q ss_pred             EEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        174 CCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       174 ~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |+|+. ++.+++||+....+++|+...|..
T Consensus       335 c~~sg-~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  335 CSWSG-NDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             EEEcC-CcceEecccccceEEEecCCCCcc
Confidence            88887 678999999999999999766644

>KOG1240|consensus

Probab=99.52  E-value=1.1e-12  Score=108.55  Aligned_cols=174  Identities=16%  Similarity=0.191  Sum_probs=122.8

Q ss_pred             EeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-------cceeeccCCcCeEEEEEcCCCCC
Q psy11351         22 HDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-------EATELAVNSGPFHAVMFNPVEAR   93 (224)
Q Consensus        22 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~   93 (224)
                      |+++ |..+..+ .|...+..++.++....+|++|+.||+|++||.+.-.       ...++......+.++.+.+ .+.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGD 1111 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCC
Confidence            4443 4444444 8999999999887665799999999999999986432       2233333466889999988 889


Q ss_pred             eEEEecCCCcEEEEecCCCc--eeeEee------cCCCceeEE-EEcCC-CC-eEeeeecCCCcEEEECCCCCcceecc-
Q psy11351         94 LVATANSKDGIALYDTRKPK--EVLMQY------GSCESCMSI-RFNKA-GT-QLLGLRRRLPPVLYNTRSSSPVAQFD-  161 (224)
Q Consensus        94 ~l~~~~~dg~v~i~d~~~~~--~~~~~~------~~~~~v~~~-~~~~~-~~-~l~~~~~d~~v~v~d~~~~~~~~~~~-  161 (224)
                      .+|.++.||.|++.++...+  ......      ...+.+.+| +|... +. .++.+..-+.+..||+++.......+ 
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            99999999999999987621  111111      122333333 44332 33 56667777889999999877766663 


Q ss_pred             --cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 --HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 --~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                        ..|.+++     ++.+| .+++++.|+..|.+.+||++-+.+
T Consensus      1192 ~~~hG~vTS-----i~idp-~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1192 QLRHGLVTS-----IVIDP-WCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred             CccccceeE-----EEecC-CceEEEEecCCceEEEEEeecCce
Confidence              2344444     55566 688999999999999999987765

>KOG0974|consensus

Probab=99.52  E-value=2.4e-13  Score=110.41  Aligned_cols=141  Identities=14%  Similarity=0.090  Sum_probs=120.5

Q ss_pred             eEEEEEeCCCcEEEEeCCC-CceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eeccCCcCeEEE
Q psy11351          8 KVLRVIGNDDHVISHDMAS-GDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAVNSGPFHAV   85 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~   85 (224)
                      -++++|+.-+.|.+|+... ..+....+|.+.|.++.++.+| .++++.|+|+++++|++.+.+... ...+|..++..+
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~  224 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC  224 (967)
T ss_pred             EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence            3788999999999999873 3445566999999999999999 899999999999999999988665 667999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-CCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      +|.| +  .+++++.|.+.++|+.... .+..+.+| ...+..++..++...+++++.|+.+++|++..
T Consensus       225 ~~~~-n--~i~t~gedctcrvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  225 CFLP-N--RIITVGEDCTCRVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             Eecc-c--eeEEeccceEEEEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999 4  9999999999999976533 44455555 45789999999999999999999999998753

>KOG4497|consensus

Probab=99.49  E-value=1e-11  Score=89.76  Aligned_cols=141  Identities=13%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      -.+.....|+.|.+|++...+....+ ....++..++|+|+|..+|.+...|-.|.+|.+.+.+.... +-.+..+..++
T Consensus        62 ~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~  140 (447)
T KOG4497|consen   62 HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYA  140 (447)
T ss_pred             eeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEE
Confidence            35667788999999999988777666 56788999999999977888899999999999988764322 22234567888


Q ss_pred             EcCCCCCeEEEecCCC------------------------------------cEEEEecCCCceeeEeecCCCceeEEEE
Q psy11351         87 FNPVEARLVATANSKD------------------------------------GIALYDTRKPKEVLMQYGSCESCMSIRF  130 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg------------------------------------~v~i~d~~~~~~~~~~~~~~~~v~~~~~  130 (224)
                      |+| ++++.+..++-.                                    .+.+||---.-.+. .....-.+..++|
T Consensus       141 f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-aYe~~lG~k~v~w  218 (447)
T KOG4497|consen  141 FHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-AYERGLGLKFVEW  218 (447)
T ss_pred             ECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-eeeeccceeEEEe
Confidence            988 777777664321                                    12233321110111 1223356788999


Q ss_pred             cCCCCeEeeeecCCCcEEEEC
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      +|.+++|++|+.|+.+|+.+-
T Consensus       219 sP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  219 SPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             ccccceEEeeccchhhhhhce
Confidence            999999999999998887653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=4.1e-11  Score=94.46  Aligned_cols=176  Identities=12%  Similarity=0.084  Sum_probs=115.4

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC---CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD---GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .|.++|.+.+.......+...+....|+|+| +.|+..+.+   ..|.+||+.+++... +....+.+....|+| +++.
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSK  256 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCE
Confidence            4888888876665555777889999999999 566554432   478999998876432 333334456789999 6666


Q ss_pred             EE-EecCCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CC--CcEEEECCCCCcceecccCCcccc
Q psy11351         95 VA-TANSKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RL--PPVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        95 l~-~~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      ++ +.+.+|  .|.+||+.+++ ...+..+........|+|+|+.++..+. ++  .|+++++.+++..... ..+... 
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~-  333 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYN-  333 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCc-
Confidence            55 555555  58888998764 3445555555677899999998776653 33  4777788776643222 112111 


Q ss_pred             eeeeEEEEeCCCCeEEEEcCC-CC--eEEEEeCCCCCe
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSD-DF--VLYMWRVPRDDI  203 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~-d~--~v~iw~~~~~~~  203 (224)
                         ....|+| +++.++..+. ++  .|.+||+.+++.
T Consensus       334 ---~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        334 ---ARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             ---cceEECC-CCCEEEEEEccCCceEEEEEECCCCCE
Confidence               1356788 5777655443 33  688899988765

>KOG2139|consensus

Probab=99.49  E-value=2.8e-11  Score=88.46  Aligned_cols=191  Identities=12%  Similarity=0.130  Sum_probs=121.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCC----ce--------eeEE---eccCCeeEEEEcCCCCcEEEEec-CCCEEEEEecCCcc
Q psy11351          7 IKVLRVIGNDDHVISHDMASG----DP--------IDFY---LHERPVYGLSVDPSQDAIFASAC-DDGRVLLFDTRSRE   70 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~----~~--------~~~~---~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~   70 (224)
                      ++-|+.|... -|.+|.....    ..        ...+   +| .+|+++.|+++| ..+++++ .|..|.|||..++.
T Consensus       153 aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  153 ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             cceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCC
Confidence            3456677654 5999986531    11        1112   34 789999999999 6777665 46789999999998


Q ss_pred             cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         71 EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      .+.......+.+.-+.|+| ++.++++++.|+..++|............-..+.|....|+|+|++|+.... +.-++|.
T Consensus       230 ~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             cccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            7655544456789999999 8899999999999999965433222222223458999999999998776553 2345565


Q ss_pred             CCCCCccee------------c-c-------cCCcccceeeeEEEEeCCCCeEEEEcCCCC--------eEEEEeCCCCC
Q psy11351        151 TRSSSPVAQ------------F-D-------HEGYYNSCTMKSCCFAGTQDEYVVSGSDDF--------VLYMWRVPRDD  202 (224)
Q Consensus       151 ~~~~~~~~~------------~-~-------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--------~v~iw~~~~~~  202 (224)
                      +.-...-..            + +       .....-+-....++|.| .|.+|++.-..+        .|.+||.+...
T Consensus       308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            421110000            0 0       01111112244578888 688888764433        45667766554


Q ss_pred             e
Q psy11351        203 I  203 (224)
Q Consensus       203 ~  203 (224)
                      .
T Consensus       387 ~  387 (445)
T KOG2139|consen  387 P  387 (445)
T ss_pred             c
Confidence            4

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=4.6e-11  Score=94.18  Aligned_cols=191  Identities=10%  Similarity=0.059  Sum_probs=119.2

Q ss_pred             CCCcceEEEEEeCC---CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeecc
Q psy11351          3 SGDPIKVLRVIGND---DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAV   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~   77 (224)
                      .+++|+.|+..+.+   ..|.+||+.+++........+.+....|+|+|..++++...++  .|.+||+.+++. ..+..
T Consensus       206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~  284 (430)
T PRK00178        206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTN  284 (430)
T ss_pred             ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEccc
Confidence            45677877766543   3689999998876655444555667999999944444665555  688889987764 34444


Q ss_pred             CCcCeEEEEEcCCCCCeEEE-ecCCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC---CcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVAT-ANSKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL---PPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~-~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~v~d~  151 (224)
                      +........|+| +++.++. ...+|  .|.++|+.+++. ..+...........|+|+|++++..+.++   .|.++|+
T Consensus       285 ~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        285 HPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence            555566788999 6665554 43444  467778776653 23322223344578999999988776432   4788898


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC-C--CeEEEEeCCCCCe
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD-D--FVLYMWRVPRDDI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d--~~v~iw~~~~~~~  203 (224)
                      .+++. ..+.......     ...|+| +++.++..+. +  ..+.++++..+..
T Consensus       363 ~tg~~-~~lt~~~~~~-----~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        363 QRGSV-RILTDTSLDE-----SPSVAP-NGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             CCCCE-EEccCCCCCC-----CceECC-CCCEEEEEEecCCceEEEEEECCCCce
Confidence            87754 3332221111     136788 5666655443 3  3577777765433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1.5e-10  Score=88.72  Aligned_cols=190  Identities=12%  Similarity=0.099  Sum_probs=127.9

Q ss_pred             cceEE-EEEeCCCcEEEEeCCCCceeeEEeccCCe-eEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVL-RVIGNDDHVISHDMASGDPIDFYLHERPV-YGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      .++++ ++-..+++|.+.|..+.+.+..+.....+ ..+.|+|++ +++++++.||.|.++|+.+++.+.+++.... ..
T Consensus         4 ~~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~   81 (369)
T PF02239_consen    4 TGNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGGN-PR   81 (369)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EE
T ss_pred             CccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCCC-cc
Confidence            34555 45567899999999999999988544444 457799999 7888888999999999999998888876444 67


Q ss_pred             EEEEcCCCCCeEEEec-CCCcEEEEecCCCceeeEeec-------CCCceeEEEEcCCCCeEeeeec-CCCcEEEECCCC
Q psy11351         84 AVMFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQYG-------SCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRSS  154 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~~  154 (224)
                      .+++++ ++++++++. ..+.+.++|.++.+.+..+..       .+..+..+..+|....++..-. .+.|.+.|....
T Consensus        82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   82 GIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             eEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            899999 777777664 688999999999887776653       2356778888888886655544 466777787765


Q ss_pred             Ccceec--ccCCcccceeeeEEEEeCCCCeEEEE-cCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVS-GSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+..-  .....     .....|.| ++++++. ......|-++|..+++..
T Consensus       161 ~~~~~~~i~~g~~-----~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  161 KNLKVTTIKVGRF-----PHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             SCEEEEEEE--TT-----EEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             cccceeeeccccc-----ccccccCc-ccceeeecccccceeEEEeeccceEE
Confidence            444322  22222     22366777 6776544 456779999999988764

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=5.3e-11  Score=93.93  Aligned_cols=176  Identities=11%  Similarity=0.065  Sum_probs=111.2

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec-CC--CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC-DD--GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d--~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .+.++|...........+...+.+..|+|+| +.|+..+ .+  ..|.+||+.+++.. .+....+.....+|+| +++.
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSP-DG~~  275 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSP-DGKK  275 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECC-CCCE
Confidence            6777788766555555677889999999999 5665443 33  36888999877642 2222233345789999 6665


Q ss_pred             EE-EecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CC--CcEEEECCCCCcceecccCCcccc
Q psy11351         95 VA-TANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RL--PPVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        95 l~-~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      |+ +.+.+|.  |.++|+.+++ ...+..+.......+|+|||+.++..+. ++  .|+++|+.+++..... ..+... 
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~-  352 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQN-  352 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCC-
Confidence            54 5566665  7777887664 3444445556677899999998876553 33  4666777766543322 122111 


Q ss_pred             eeeeEEEEeCCCCeEEEEcCC-CC--eEEEEeCCCCCe
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSD-DF--VLYMWRVPRDDI  203 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~-d~--~v~iw~~~~~~~  203 (224)
                         ....|+| ++++|+..+. ++  .|.++|+.+++.
T Consensus       353 ---~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        353 ---LGGSITP-DGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             ---cCeeECC-CCCEEEEEEecCCceEEEEEECCCCCe
Confidence               1246788 5766655433 44  566678877765

>KOG4547|consensus

Probab=99.45  E-value=2.8e-11  Score=93.27  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=125.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      ...++-|...|.|.+|++..++....+   .|.+.|.++.++.+- ..|.+++.|+.+..|+....+.++.++.....+.
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            357888999999999999999988777   699999999999876 7999999999999999999999999988888999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC-----CCeEeee-ecCCCcEEEECCC
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA-----GTQLLGL-RRRLPPVLYNTRS  153 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~d~~v~v~d~~~  153 (224)
                      +++.+| ++.++++++  +.|++||+++.+.+..+.+|.++|.++.|-.+     |.+++++ ..+..+.+|-++.
T Consensus       149 sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  149 SLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999 788998875  57999999999999999999999999999876     6777664 3455578887765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=7.7e-11  Score=93.02  Aligned_cols=189  Identities=10%  Similarity=0.016  Sum_probs=113.7

Q ss_pred             CCCcceEEEEEeC-CC--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCE--EEEEecCCcccceeecc
Q psy11351          3 SGDPIKVLRVIGN-DD--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR--VLLFDTRSREEATELAV   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~   77 (224)
                      .+++|+.|+..+. ++  .|.+||+.+++........+......|+|+|..++++.+.++.  |.++|+.+++. ..+..
T Consensus       225 wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~  303 (448)
T PRK04792        225 WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITR  303 (448)
T ss_pred             ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECcc
Confidence            3567777776553 33  5889999888765444334445578999999545555666664  77778877653 34444


Q ss_pred             CCcCeEEEEEcCCCCCeEEE-ecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-C--CcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVAT-ANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-L--PPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~-~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~v~d~  151 (224)
                      +.......+|+| +++.++. ...++.  |.++|+.+++. ..+..........+|+|+|++++..+.+ +  .|.++|+
T Consensus       304 ~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl  381 (448)
T PRK04792        304 HRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL  381 (448)
T ss_pred             CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence            555567889999 6665554 434444  66667776643 3332222334457899999998876543 3  3566788


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEE-cCCCC--eEEEEeCCCC
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS-GSDDF--VLYMWRVPRD  201 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~--~v~iw~~~~~  201 (224)
                      .+++.. .+......    . ...|+| +++.|+. ...++  .+++++....
T Consensus       382 ~~g~~~-~lt~~~~d----~-~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        382 ETGAMQ-VLTSTRLD----E-SPSVAP-NGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CCCCeE-EccCCCCC----C-CceECC-CCCEEEEEEecCCceEEEEEECCCC
Confidence            776543 22211111    1 136788 5665544 43444  4677777544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=8.4e-11  Score=92.19  Aligned_cols=186  Identities=10%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             EEeCCC--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC----EEEEEecCCc---ccceeeccCCcCe
Q psy11351         12 VIGNDD--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG----RVLLFDTRSR---EEATELAVNSGPF   82 (224)
Q Consensus        12 ~~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~---~~~~~~~~~~~~i   82 (224)
                      +...+|  .|.+.++.+++........+.....+|+|||..++++...+|    .+.+|++..+   +............
T Consensus       204 ~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~  283 (428)
T PRK01029        204 VSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQ  283 (428)
T ss_pred             EEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCc
Confidence            444443  578888888876665555566677899999944444443323    3444676653   2222222222344


Q ss_pred             EEEEEcCCCCCeEEEe-cCCCcEEEE--ecCC-CceeeEeecCCCceeEEEEcCCCCeEeeeecC---CCcEEEECCCCC
Q psy11351         83 HAVMFNPVEARLVATA-NSKDGIALY--DTRK-PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLYNTRSSS  155 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~-~~dg~v~i~--d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~d~~~~~  155 (224)
                      ...+|+| +++.|+.. ..+|...+|  ++.. +.....+......+....|+|||+.|+..+.+   ..|.+||+.+++
T Consensus       284 ~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        284 GNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             CCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            6789999 77765544 456655555  4432 22344444445567788999999988876543   358999998886


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEE-EcCC--CCeEEEEeCCCCCeE
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVV-SGSD--DFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~--d~~v~iw~~~~~~~~  204 (224)
                      ...........     ....|+| +++.|+ +...  ...|+++|+.+++..
T Consensus       363 ~~~Lt~~~~~~-----~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        363 DYQLTTSPENK-----ESPSWAI-DSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             eEEccCCCCCc-----cceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            54333222222     2356777 576655 3332  457889999887653

>KOG3914|consensus

Probab=99.43  E-value=3.9e-12  Score=93.80  Aligned_cols=157  Identities=15%  Similarity=0.207  Sum_probs=110.6

Q ss_pred             eeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC--c
Q psy11351         39 VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP--K  113 (224)
Q Consensus        39 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~--~  113 (224)
                      ...+..++.+ .++|.+..+....+++++.......+   ..-...-+++.|.. +......+...|.++-+|+-+.  .
T Consensus        65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence            3445566777 79999988888778877655431111   11122234444544 3344444444444444444321  3


Q ss_pred             eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        114 EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                      +...+.+|-+.++.++++||+++++++..|..|++-.......+..|  +|...|..+.+.       +++.|++++.|+
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-------~~~~LlS~sGD~  215 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-------DNYLLLSGSGDK  215 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-------cCceeeecCCCC
Confidence            45566789999999999999999999999999999988877777777  688888876654       466799999999


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      +|++||+.+|+..
T Consensus       216 tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  216 TLRLWDITSGKLL  228 (390)
T ss_pred             cEEEEecccCCcc
Confidence            9999999999875

>KOG2695|consensus

Probab=99.38  E-value=2.3e-12  Score=93.53  Aligned_cols=164  Identities=15%  Similarity=0.253  Sum_probs=122.9

Q ss_pred             EEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-----cceeeccCCcCeEEE
Q psy11351         11 RVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-----EATELAVNSGPFHAV   85 (224)
Q Consensus        11 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~i~~~   85 (224)
                      ++.+.+-.|-+-|++++-.. .+...+.|.++.|...+ ++++.|+.+|.|..+|++.+.     +.+.+ .|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            44455667888888776443 23467789999999877 799999999999999998762     23333 578889999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCce---eeEeecCCCceeE--EEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKE---VLMQYGSCESCMS--IRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      ..-..++++|++.+-+|+|++||+|.-++   +.+..+|...-.-  +...+....+++++.|...++|.++.+..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            87765778888888999999999997766   6666666543322  334566778888999999999999999999888


Q ss_pred             ccCCcccceeeeEEEEe
Q psy11351        161 DHEGYYNSCTMKSCCFA  177 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~  177 (224)
                      ..+.....+.+..++|.
T Consensus       385 pf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  385 PFPYSASEVDIPSVAFD  401 (425)
T ss_pred             CCCCccccccccceehh
Confidence            66555555445455553

>KOG3914|consensus

Probab=99.38  E-value=2.5e-11  Score=89.61  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=112.6

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCc----eeeEEeccCCeeEEEEcCCCCcEEE---EecCCCEEEEEecCCcccceee
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGD----PIDFYLHERPVYGLSVDPSQDAIFA---SACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~---s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      ..+.++++|.+..+....++++....    +...+.-...-+.+.|..+. ....   .++....+.+|....+. ...+
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~~-~~~~  147 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSGR-CEPI  147 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccccC-cchh
Confidence            45678899999888887788776543    23333344444555555444 3333   34555566666655543 4455


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      -+|.+.+..++|+| ++++++++..|..|++-.......+..+. +|+..|..++.-++ ..|++++.|+++++||+.+|
T Consensus       148 lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence            68999999999999 88999999999999997776554444443 69999999999875 45899999999999999999


Q ss_pred             Ccceecc
Q psy11351        155 SPVAQFD  161 (224)
Q Consensus       155 ~~~~~~~  161 (224)
                      +.+.++.
T Consensus       226 k~L~t~d  232 (390)
T KOG3914|consen  226 KLLDTCD  232 (390)
T ss_pred             Ccccccc
Confidence            9887663

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.35  E-value=7.2e-10  Score=95.39  Aligned_cols=199  Identities=8%  Similarity=0.103  Sum_probs=128.1

Q ss_pred             CCCCcceEEEE-EeCCCcEEEEeCCCCceeeEEec-----------------cCCeeEEEEcCCCCcEEEEecCCCEEEE
Q psy11351          2 ASGDPIKVLRV-IGNDDHVISHDMASGDPIDFYLH-----------------ERPVYGLSVDPSQDAIFASACDDGRVLL   63 (224)
Q Consensus         2 a~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~d~~i~i   63 (224)
                      +++..++.|+. -...+.|+++|..++......+-                 -....+++|+|++..++++...++.|++
T Consensus       630 avd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v  709 (1057)
T PLN02919        630 AYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWE  709 (1057)
T ss_pred             EEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEE
Confidence            34444454444 44456799999877654332210                 1234689999955478888888999999


Q ss_pred             EecCCcccceeecc---------C------CcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCCCceeeEee--------
Q psy11351         64 FDTRSREEATELAV---------N------SGPFHAVMFNPVEAR-LVATANSKDGIALYDTRKPKEVLMQY--------  119 (224)
Q Consensus        64 wd~~~~~~~~~~~~---------~------~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~--------  119 (224)
                      ||..++... .+.+         +      -.....++++| ++. ++++-+.++.|++||+.++.......        
T Consensus       710 ~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        710 YNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            998766421 1111         0      12345799999 555 66677778999999998764321110        


Q ss_pred             ----c-C--------CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccC--C----cccc---eeeeEEEEe
Q psy11351        120 ----G-S--------CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE--G----YYNS---CTMKSCCFA  177 (224)
Q Consensus       120 ----~-~--------~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~--~----~~~~---~~~~~~~~~  177 (224)
                          + .        -.....++++++|+.+++-..++.|++||..++.........  +    ....   -....++++
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd  867 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG  867 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence                0 0        112468899999998888888999999999876554332211  0    0000   012235666


Q ss_pred             CCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        178 GTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       178 ~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      + +++++++-+.++.|++||+.+++.
T Consensus       868 ~-dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        868 E-NGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             C-CCCEEEEECCCCEEEEEECCCCcc
Confidence            6 688899999999999999998765

>KOG1409|consensus

Probab=99.35  E-value=1.2e-10  Score=84.76  Aligned_cols=187  Identities=11%  Similarity=0.120  Sum_probs=136.2

Q ss_pred             EEEEEeCCCcEEEEeC-CCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC----CcccceeeccCCcC
Q psy11351          9 VLRVIGNDDHVISHDM-ASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR----SREEATELAVNSGP   81 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~   81 (224)
                      -+++.+.|.++|||-- +.++.-..+  ....+++++.+.++. ..|+.|-..|++.-+.+.    .....+....|...
T Consensus        38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~  116 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR  116 (404)
T ss_pred             CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence            4789999999999954 445544444  346789999999987 789999999999887653    33445666788888


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCC-----------------------------------------CceeeEeec
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRK-----------------------------------------PKEVLMQYG  120 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-----------------------------------------~~~~~~~~~  120 (224)
                      +..+-|+- ...++++.+.|..+.---.+.                                         ......+.+
T Consensus       117 v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~  195 (404)
T KOG1409|consen  117 VSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG  195 (404)
T ss_pred             eeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC
Confidence            88888887 667777776665543211111                                         112233446


Q ss_pred             CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC--CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        121 SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS--SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      |.+.+.+++|.|....|+++..|..+.+||+...  .....+.|...+..+...+      .-..+.+++.||.|.+|++
T Consensus       196 h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~------~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  196 HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ------HTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh------hheeeeeccCCCeEEEEec
Confidence            8899999999999999999999999999999643  3333346777766544333      5678999999999999999


Q ss_pred             CCCCe
Q psy11351        199 PRDDI  203 (224)
Q Consensus       199 ~~~~~  203 (224)
                      +....
T Consensus       270 n~~r~  274 (404)
T KOG1409|consen  270 NVKRV  274 (404)
T ss_pred             cceee
Confidence            87654

>KOG2695|consensus

Probab=99.35  E-value=4.8e-12  Score=91.89  Aligned_cols=148  Identities=16%  Similarity=0.160  Sum_probs=116.1

Q ss_pred             EEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC----ceeeEeecCCCceeEE
Q psy11351         53 ASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP----KEVLMQYGSCESCMSI  128 (224)
Q Consensus        53 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~v~~~  128 (224)
                      ++.+.+-.+-+-|++++-. +.+. ..+.|.++.|.. .++++..|..+|.|..+|+|..    .......-|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence            5566677888889888753 3343 456789999998 8899999999999999999965    2333444588999999


Q ss_pred             EEcC-CCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        129 RFNK-AGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       129 ~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..-. ++++|++.+.+|+|++||++.-+..... ...++++..+..++-..+ .+..+++++.|...+||.++.+...
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCcee
Confidence            8776 7889999999999999999876663323 347777777776666666 4677888999999999999998875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=3.7e-10  Score=86.63  Aligned_cols=155  Identities=17%  Similarity=0.181  Sum_probs=108.3

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEE-EecCCCEEEEEecCCcccceeecc----
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFA-SACDDGRVLLFDTRSREEATELAV----   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~----   77 (224)
                      ++++++++.+++.||.|.++|+.+++.+..+.-.....+++++++| ++++ +....+.+.++|.++.++++.+..    
T Consensus        44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~  122 (369)
T PF02239_consen   44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP  122 (369)
T ss_dssp             -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC-CEEEEEecCCCceeEeccccccceeeccccccc
Confidence            4677899999999999999999999999988777778999999999 5555 455789999999999988877643    


Q ss_pred             ---CCcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeee-ecCCCcEEEEC
Q psy11351         78 ---NSGPFHAVMFNPVEAR-LVATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGL-RRRLPPVLYNT  151 (224)
Q Consensus        78 ---~~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~  151 (224)
                         .+..+..+..+| ... ++++--+.+.|.+.|....+.+. .............|+|++++++++ ..++.+-++|.
T Consensus       123 ~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~  201 (369)
T PF02239_consen  123 VDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT  201 (369)
T ss_dssp             TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred             ccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence               234677888888 555 55555555888888987664433 233455667889999999987765 45667888998


Q ss_pred             CCCCccee
Q psy11351        152 RSSSPVAQ  159 (224)
Q Consensus       152 ~~~~~~~~  159 (224)
                      .+++.+..
T Consensus       202 ~~~k~v~~  209 (369)
T PF02239_consen  202 KTGKLVAL  209 (369)
T ss_dssp             TTTEEEEE
T ss_pred             ccceEEEE
Confidence            87655543

...

>KOG4714|consensus

Probab=99.34  E-value=1.5e-11  Score=86.09  Aligned_cols=148  Identities=8%  Similarity=0.003  Sum_probs=97.4

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceee-EE--eccCCeeEEEEcCCCCcEEEEecC-----CCEEEEEecCCcccceee
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPID-FY--LHERPVYGLSVDPSQDAIFASACD-----DGRVLLFDTRSREEATEL   75 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~--~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~   75 (224)
                      +-+++.++++..||.+.+.+.+.-.... ..  .|.+ -.+.+....+ +.+.++.-     -+..+.|+++..+....-
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecc-cEEecCCcceEeeccceeeeccccccccccc
Confidence            3456679999999999999987521111 11  1221 1222333333 34444321     134445655543322111


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-ecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-YGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ......+.+++-+|....++++|+.||.+.+||.|....+..+ ..|+.+++.+-|+|. +..|+++++||.+..||..+
T Consensus       176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            1122349999999977888999999999999999987444433 369999999999995 78999999999999999763

>KOG1334|consensus

Probab=99.34  E-value=8.9e-12  Score=94.13  Aligned_cols=168  Identities=13%  Similarity=0.128  Sum_probs=134.2

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-ccCCcCeEEEEEcCCC-CCeEEEecCCCcEEEEecCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AVNSGPFHAVMFNPVE-ARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~  111 (224)
                      .|.+.|+.+.|+..| ..+++|+.|..|.+||...+++...+ .+|...|....|-|+. ...+++++.||.+++=.+..
T Consensus       140 ~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            799999999999999 89999999999999999988876665 5788888888888853 46788999999999877654


Q ss_pred             Cce---eeEeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcceecc--cCCcccceeeeEEEEeCCCCeEEE
Q psy11351        112 PKE---VLMQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPVAQFD--HEGYYNSCTMKSCCFAGTQDEYVV  185 (224)
Q Consensus       112 ~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~  185 (224)
                      .+.   ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+.  .......+....++..|.+...++
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence            332   33445699999999999975 468889999999999999887766552  112222455666788887777899


Q ss_pred             EcCCCCeEEEEeCCCCC
Q psy11351        186 SGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       186 s~~~d~~v~iw~~~~~~  202 (224)
                      +|+.|..+++||.+.-.
T Consensus       299 VgG~dqf~RvYD~R~~~  315 (559)
T KOG1334|consen  299 VGGSDQFARVYDQRRID  315 (559)
T ss_pred             cCChhhhhhhhcccchh
Confidence            99999999999987643

>KOG4190|consensus

Probab=99.32  E-value=1.2e-11  Score=95.44  Aligned_cols=185  Identities=15%  Similarity=0.179  Sum_probs=128.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCC-------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASG-------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA   76 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   76 (224)
                      ++.+-+++++.|.+|++|.++..       .+..++ .|..+|.++.|..+. ..++++  ||-|++||.--++++..+.
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~Sc--D~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIASC--DGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeeec--cCcceeecccccchhHhhh
Confidence            34456889999999999998642       234444 799999999999876 566554  7899999988777655432


Q ss_pred             --cCC---cCeEEEEEcCCCCCeEEE-ecCCCcEEEEecCCCceeeEee-----cCCCceeEEEEcCCCCeEeeeecCCC
Q psy11351         77 --VNS---GPFHAVMFNPVEARLVAT-ANSKDGIALYDTRKPKEVLMQY-----GSCESCMSIRFNKAGTQLLGLRRRLP  145 (224)
Q Consensus        77 --~~~---~~i~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~  145 (224)
                        ...   +.|.++.--  +..++.. ++...+|+++|.|..+-.....     +...-+.+++..+.|+.++++-..|.
T Consensus       822 dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc  899 (1034)
T KOG4190|consen  822 DAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC  899 (1034)
T ss_pred             cCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence              122   234444311  3344444 4788899999999876555443     24566889999999999999999999


Q ss_pred             cEEEECCCCCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEE-EeCCCC
Q psy11351        146 PVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYM-WRVPRD  201 (224)
Q Consensus       146 v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~i-w~~~~~  201 (224)
                      +.+.|.++|+.+..++ .......++      .| ..+.++....|..+.+ |-.-.+
T Consensus       900 i~~LDaR~G~vINswrpmecdllqla------ap-sdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  900 IAILDARNGKVINSWRPMECDLLQLA------AP-SDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             EEEEecCCCceeccCCcccchhhhhc------Cc-hhHHHHhhcccceeEeeehhcCC
Confidence            9999999999887773 222222111      12 4566777777887777 765554

>KOG1354|consensus

Probab=99.30  E-value=3.7e-11  Score=87.34  Aligned_cols=195  Identities=13%  Similarity=0.115  Sum_probs=131.1

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCce-----eeEE-------------eccCCeeEEEEcCCC-CcEEEEecCCCEEEE
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDP-----IDFY-------------LHERPVYGLSVDPSQ-DAIFASACDDGRVLL   63 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~-------------~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~i   63 (224)
                      ++..|++||+|..+|.|.++.-+....     ...+             .....|+.+.|.+++ ...++....|.+|++
T Consensus        33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl  112 (433)
T KOG1354|consen   33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL  112 (433)
T ss_pred             eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence            467899999999999999997643221     1111             244678999999765 245667778999999


Q ss_pred             EecCCcccc-----------------------------------eee-ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEE
Q psy11351         64 FDTRSREEA-----------------------------------TEL-AVNSGPFHAVMFNPVEARLVATANSKDGIALY  107 (224)
Q Consensus        64 wd~~~~~~~-----------------------------------~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~  107 (224)
                      |.++.....                                   +.+ .+|.--|+++.++. +...++++ .|=.|.+|
T Consensus       113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLW  190 (433)
T KOG1354|consen  113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLW  190 (433)
T ss_pred             eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeec
Confidence            988543210                                   011 24666789999998 88888887 67889999


Q ss_pred             ecCCCceeeEe---ec-----CCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcc----eecc-cC---------C
Q psy11351        108 DTRKPKEVLMQ---YG-----SCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPV----AQFD-HE---------G  164 (224)
Q Consensus       108 d~~~~~~~~~~---~~-----~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~----~~~~-~~---------~  164 (224)
                      .+.-......+   ..     -..-|++..|+|.. +.++-.+..|+|++.|++...+.    ..+. ..         +
T Consensus       191 nlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffse  270 (433)
T KOG1354|consen  191 NLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSE  270 (433)
T ss_pred             cccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHH
Confidence            98744332222   22     23467889999974 56666778899999999853221    1111 11         1


Q ss_pred             cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        165 YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      -+.  .++.+.|++ +|+|+++-+. -+|++||++....
T Consensus       271 iIs--SISDvKFs~-sGryilsRDy-ltvk~wD~nme~~  305 (433)
T KOG1354|consen  271 IIS--SISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAK  305 (433)
T ss_pred             Hhh--hhhceEEcc-CCcEEEEecc-ceeEEEeccccCC
Confidence            122  245577777 6999998654 4899999965544

>KOG4532|consensus

Probab=99.29  E-value=2.7e-09  Score=75.41  Aligned_cols=196  Identities=8%  Similarity=-0.007  Sum_probs=127.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      -.+||.|+..|...+|...+.+.....  .|...|+-+.=.-+....+..++.|.++++.++.-+.....+....-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            347999999999999999977655443  344433322211122235666788888888888654432222111123789


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      +.+++ ++.++++.+....|-.|.+..... ...+.  ..++.-.+..|+.....++++..||++.|||++........ 
T Consensus       164 ~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  164 LHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            99999 999999999999999999875432 22222  34455578899999999999999999999999875433322 


Q ss_pred             ccCCcccceeeeEEEEeCCC-CeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQ-DEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ....+-..-++..|.|++.+ -++|.-.-.-+.+.+.|++++..
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            11111112234557777621 13444444457899999999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.24  E-value=1.5e-08  Score=76.59  Aligned_cols=182  Identities=13%  Similarity=0.087  Sum_probs=117.7

Q ss_pred             CCCcEEEEeCCCCceeeEEecc--------CCeeEEEEcCCCCcEEEEec-C-CCEEEEEecCCcccceeeccCC-----
Q psy11351         15 NDDHVISHDMASGDPIDFYLHE--------RPVYGLSVDPSQDAIFASAC-D-DGRVLLFDTRSREEATELAVNS-----   79 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~-----   79 (224)
                      .+..|.+||..+.+.+..+...        .....++++|+| ++++... . +..|-+.|+.+++.+..+....     
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy  153 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF  153 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence            5789999999999998877432        233488999999 6666554 3 7899999998876443221000     


Q ss_pred             -------------c-------------CeEEEE--------------EcCCCCCeEEEecCCCcEEEEecCCCc-----e
Q psy11351         80 -------------G-------------PFHAVM--------------FNPVEARLVATANSKDGIALYDTRKPK-----E  114 (224)
Q Consensus        80 -------------~-------------~i~~~~--------------~~~~~~~~l~~~~~dg~v~i~d~~~~~-----~  114 (224)
                                   +             ......              |.+.++.++..... |.|.+.|+....     .
T Consensus       154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence                         0             011111              12224555555544 899999964322     1


Q ss_pred             eeEeec-------CCCceeEEEEcCCCCeEeeee----------cCCCcEEEECCCCCcceecccCCcccceeeeEEEEe
Q psy11351        115 VLMQYG-------SCESCMSIRFNKAGTQLLGLR----------RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA  177 (224)
Q Consensus       115 ~~~~~~-------~~~~v~~~~~~~~~~~l~~~~----------~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (224)
                      ...+..       ..+...-++++|+++.+++..          ..+.|.++|..+++.+..+.-......     +.++
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~-----iavS  307 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDS-----INVS  307 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceee-----EEEC
Confidence            111110       223344599999999888742          124699999999999988854444444     5566


Q ss_pred             CCCCe-EEEEcC-CCCeEEEEeCCCCCeE
Q psy11351        178 GTQDE-YVVSGS-DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       178 ~~~~~-~l~s~~-~d~~v~iw~~~~~~~~  204 (224)
                      | +++ +|++.. .++.|.++|..+++..
T Consensus       308 ~-Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       308 Q-DAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             C-CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            6 666 666544 6788999999999876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.24  E-value=6e-08  Score=74.33  Aligned_cols=197  Identities=10%  Similarity=0.163  Sum_probs=119.2

Q ss_pred             CCCCcceEEEEEe-CCCcEEEEeCCC-CceeeE---Eec-----------cCCeeEEEEcCCCCcEEEEecCCCEEEEEe
Q psy11351          2 ASGDPIKVLRVIG-NDDHVISHDMAS-GDPIDF---YLH-----------ERPVYGLSVDPSQDAIFASACDDGRVLLFD   65 (224)
Q Consensus         2 a~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd   65 (224)
                      +.++++++|+++. .+|+|.++++.. +.....   ..|           .....++.|+|++..++++.-....|.+|+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            4567778777776 589999999986 433322   211           245789999999944444444556899999


Q ss_pred             cCCccc-c---eeec-cCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecC--CCce--eeEeec------CCCceeEEE
Q psy11351         66 TRSREE-A---TELA-VNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTR--KPKE--VLMQYG------SCESCMSIR  129 (224)
Q Consensus        66 ~~~~~~-~---~~~~-~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~--~~~~--~~~~~~------~~~~v~~~~  129 (224)
                      +..... +   ..+. .....-..+.|+| +++++ ++...++.|.+|++.  ++..  ......      .......++
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            976541 1   1222 2234568999999 65555 555667889999988  3321  111111      122578899


Q ss_pred             EcCCCCeEeeee-cCCCcEEEECCC--CCcc--eecccCCcccceeeeEEEEeCCCCeEEEEc-CCCCeEEEEeC--CCC
Q psy11351        130 FNKAGTQLLGLR-RRLPPVLYNTRS--SSPV--AQFDHEGYYNSCTMKSCCFAGTQDEYVVSG-SDDFVLYMWRV--PRD  201 (224)
Q Consensus       130 ~~~~~~~l~~~~-~d~~v~v~d~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~iw~~--~~~  201 (224)
                      ++|+|++|+++. ..+.|.+|++..  ++..  ..+.-.+..    -..+.++| ++++|+++ ..++.|.+|++  .+|
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~----Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF----PRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS----EEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC----ccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCC
Confidence            999999988875 456799999942  3322  122111221    22366677 67776655 46779999976  466


Q ss_pred             CeE
Q psy11351        202 DIY  204 (224)
Q Consensus       202 ~~~  204 (224)
                      .+.
T Consensus       327 ~l~  329 (345)
T PF10282_consen  327 KLT  329 (345)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=7.1e-08  Score=73.94  Aligned_cols=195  Identities=13%  Similarity=0.150  Sum_probs=120.5

Q ss_pred             CCCCcceEEEEEeC----CCcEEEEeCCCC--ceee--EEe-ccCCeeEEEEcCCCCcEEEEe-cCCCEEEEEecCCc-c
Q psy11351          2 ASGDPIKVLRVIGN----DDHVISHDMASG--DPID--FYL-HERPVYGLSVDPSQDAIFASA-CDDGRVLLFDTRSR-E   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~----dg~i~iwd~~~~--~~~~--~~~-~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~-~   70 (224)
                      +.++.+++|.+..+    ++.|..|.+...  ++..  ... .......++++|++ ++|+++ ..+|.+.++++... .
T Consensus        43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~  121 (345)
T PF10282_consen   43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGS  121 (345)
T ss_dssp             EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSE
T ss_pred             EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcc
Confidence            45567777887776    578999988764  3322  222 45566789999999 555555 56899999999863 3


Q ss_pred             cce---eec----------cCCcCeEEEEEcCCCCCeEEEe-cCCCcEEEEecCCCce-ee---Ee-ecCCCceeEEEEc
Q psy11351         71 EAT---ELA----------VNSGPFHAVMFNPVEARLVATA-NSKDGIALYDTRKPKE-VL---MQ-YGSCESCMSIRFN  131 (224)
Q Consensus        71 ~~~---~~~----------~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~-~~---~~-~~~~~~v~~~~~~  131 (224)
                      ...   .+.          .......++.++| +++++++. -....|.+|++..... +.   .+ .........++|+
T Consensus       122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~  200 (345)
T PF10282_consen  122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS  200 (345)
T ss_dssp             EEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred             cceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence            211   111          1123578999999 76766654 3456799999976542 21   11 2355677899999


Q ss_pred             CCCCeEeeee-cCCCcEEEECC--CCCc--ceecc-cCCccc-ceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCC
Q psy11351        132 KAGTQLLGLR-RRLPPVLYNTR--SSSP--VAQFD-HEGYYN-SCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVP  199 (224)
Q Consensus       132 ~~~~~l~~~~-~d~~v~v~d~~--~~~~--~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~  199 (224)
                      |+++++++.. .++.|.++++.  ++..  +..+. ...... ......+.++| ++++| ++...+..|.+|++.
T Consensus       201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEEC
T ss_pred             CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEe
Confidence            9999887765 46779999887  3322  22221 111111 11344577888 57665 455567899999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.22  E-value=5.9e-09  Score=79.28  Aligned_cols=128  Identities=18%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             EEEEEeCCC-cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351          9 VLRVIGNDD-HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus         9 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      -++.|..|| .+-|+|..+++..+..+.-+.|.++..+|+| +.++.+.....+-+.|+.+++....-+...+-|+.+.|
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~  451 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW  451 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence            578888898 8999999999988877778899999999999 78999988899999999999865555666778999999


Q ss_pred             cCCCCCeEEEecCCC----cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEee
Q psy11351         88 NPVEARLVATANSKD----GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        88 ~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      +| +++++|-+--+|    .|++||+..++... .....+.=.+-+|.|++++|.-
T Consensus       452 ~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         452 HP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             cC-CceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEEE
Confidence            99 999999876555    48999998765433 3322333345567777776543

>KOG2315|consensus

Probab=99.22  E-value=3.2e-09  Score=81.86  Aligned_cols=176  Identities=15%  Similarity=0.191  Sum_probs=114.8

Q ss_pred             CCCcEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEecC--C---------CEEEEEecCCcccceeeccCC
Q psy11351         15 NDDHVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASACD--D---------GRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~--d---------~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      .-+.|+||...-.......    -....=-.+.|++-|..+|+.++.  |         .++++.++........+ ...
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~  270 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKE  270 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCC
Confidence            3456888877632211111    012222357788776445444432  2         46777777733333333 347


Q ss_pred             cCeEEEEEcCCCCCeEEEe--cCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec---CCCcEEEECCCC
Q psy11351         80 GPFHAVMFNPVEARLVATA--NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR---RLPPVLYNTRSS  154 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~d~~~~  154 (224)
                      ++|.++.|+| +++-+++.  -.=..+.+||++-. .+..+  .+++=.++-|+|.|++++.++.   .|.+-+||+.+.
T Consensus       271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCceEEEECC-CCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            8999999999 66555443  34467999999843 44443  3466678999999999998765   478999999998


Q ss_pred             CcceecccCCcccceeeeEEEEeCCCCeEEEEcCC------CCeEEEEeCCCCC
Q psy11351        155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD------DFVLYMWRVPRDD  202 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~v~iw~~~~~~  202 (224)
                      +++..+.-...      +-+.|+| ||++++|++.      |..++||+.....
T Consensus       347 K~i~~~~a~~t------t~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  347 KLIAKFKAANT------TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             hhccccccCCc------eEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence            88777743222      2378999 7999988865      6788999976543

>KOG1409|consensus

Probab=99.21  E-value=1.4e-09  Score=79.29  Aligned_cols=147  Identities=16%  Similarity=0.198  Sum_probs=110.0

Q ss_pred             CCcceEEEEEeCCCcEEEEeCC----CCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc---------
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMA----SGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR---------   69 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------   69 (224)
                      ......|+.|-..|++.=+.+.    .....+.+ .|...+..+-|+... ..+++.+.|..+.---.+.+         
T Consensus        77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~  155 (404)
T KOG1409|consen   77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFE  155 (404)
T ss_pred             eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEee
Confidence            3445678888888888877653    23333333 788899998888765 67777777755532111111         


Q ss_pred             --------------------------------ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc-eee
Q psy11351         70 --------------------------------EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK-EVL  116 (224)
Q Consensus        70 --------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~  116 (224)
                                                      .++..+.+|.+.+.+++|.+ ...++.+|..|..+.+||+--.+ ...
T Consensus       156 ~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  156 TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceee
Confidence                                            13345678999999999999 89999999999999999996432 345


Q ss_pred             EeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351        117 MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      ...+|...|..+..-+.-+.+.+++.|+.|.+|+..
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            566799999999888888999999999999999875

>KOG4532|consensus

Probab=99.20  E-value=5.1e-09  Score=74.09  Aligned_cols=148  Identities=16%  Similarity=0.062  Sum_probs=108.3

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEecc--CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-ccee--eccCCcCeEE
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYLHE--RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATE--LAVNSGPFHA   84 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~--~~~~~~~i~~   84 (224)
                      +.-++.|.++++.+++.+...... |.  -.+.++++++++ .++++.+....|..|.+.... .+..  ....+..=.+
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             eeeccCCcceeEEEEecCccccee-eccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            455677888888887755433332 32  238899999998 899999999999999886543 2222  2233444578


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-----cCCCceeEEEEcCCCC--eEeeeecCCCcEEEECCCCCcc
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-----GSCESCMSIRFNKAGT--QLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~--~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ..|+. ....+|++..||.+.|||+|....+....     .|.+.+..+.|++.|.  +|+..-.-+.+++.|+++++..
T Consensus       209 ~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  209 NSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             eeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            88998 88999999999999999999765544332     4889999999998764  4444444567999999998776


Q ss_pred             eec
Q psy11351        158 AQF  160 (224)
Q Consensus       158 ~~~  160 (224)
                      +.+
T Consensus       288 q~I  290 (344)
T KOG4532|consen  288 QVI  290 (344)
T ss_pred             eEE
Confidence            655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=3.2e-09  Score=83.38  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=96.0

Q ss_pred             CCCcceEEEEEeC-CC----cEEEEeCCCC---ceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEe--cCC-cc
Q psy11351          3 SGDPIKVLRVIGN-DD----HVISHDMASG---DPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFD--TRS-RE   70 (224)
Q Consensus         3 ~~~~~~~l~~~~~-dg----~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~-~~   70 (224)
                      .+++|+.|+..+. +|    .+.+|++..+   +...... ........+|+|+|..++++...+|...+|.  +.. +.
T Consensus       238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence            3567777775542 23    3444776653   3333332 2234567899999943444555567555554  432 22


Q ss_pred             cceeeccCCcCeEEEEEcCCCCCeEEEecC-C--CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec---CC
Q psy11351         71 EATELAVNSGPFHAVMFNPVEARLVATANS-K--DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR---RL  144 (224)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~  144 (224)
                      ....+..+...+....|+| +++.|+..+. +  ..|.+||+.+++. ..+......+....|+|||+.|+....   ..
T Consensus       318 ~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~  395 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNES  395 (428)
T ss_pred             ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence            3344444445677899999 7776665543 2  3689999987754 334333445678999999998875433   34


Q ss_pred             CcEEEECCCCCcceecc
Q psy11351        145 PPVLYNTRSSSPVAQFD  161 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~~  161 (224)
                      .|+++|+.+++......
T Consensus       396 ~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        396 ELYLISLITKKTRKIVI  412 (428)
T ss_pred             eEEEEECCCCCEEEeec
Confidence            58888988776544433

>KOG4190|consensus

Probab=99.19  E-value=4.8e-11  Score=92.14  Aligned_cols=161  Identities=14%  Similarity=0.169  Sum_probs=117.2

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-------ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-------EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL  106 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i  106 (224)
                      +|...|..+.-..+. +-+++++.|+++++|.++..       .+..+++.|..+|.++.|-. +.+.+++  .||.+++
T Consensus       733 GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~giHl  808 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGGIHL  808 (1034)
T ss_pred             CcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCccee
Confidence            898889888766554 78999999999999998642       25678899999999999988 7677766  5889999


Q ss_pred             EecCCCceeeEeec--CCCceeEEEEcCC--CCeEeee-ecCCCcEEEECCCCCcceeccc---C---CcccceeeeEEE
Q psy11351        107 YDTRKPKEVLMQYG--SCESCMSIRFNKA--GTQLLGL-RRRLPPVLYNTRSSSPVAQFDH---E---GYYNSCTMKSCC  175 (224)
Q Consensus       107 ~d~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~-~~d~~v~v~d~~~~~~~~~~~~---~---~~~~~~~~~~~~  175 (224)
                      ||.--+..+.+...  ..+.+..+..-|+  ...+..+ +...+|+++|.+..+-..+++-   .   +.+.+     ++
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~-----ia  883 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA-----IA  883 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE-----EE
Confidence            99876655443321  2233333444343  3444444 6788999999998877666631   1   22333     33


Q ss_pred             EeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        176 FAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       176 ~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+ .|+.++++=.+|.+.+.|.++|+..
T Consensus       884 Va~-~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  884 VAD-KGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             ecc-CcchhhHHhcCCcEEEEecCCCcee
Confidence            344 7999999999999999999999863

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.18  E-value=2.5e-08  Score=72.34  Aligned_cols=185  Identities=12%  Similarity=0.029  Sum_probs=117.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-ccCC---cCe
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AVNS---GPF   82 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~---~~i   82 (224)
                      +..+++++.++.+..||..+|+.+..+.....+.......+  ..++.+..++.+..+|..+++.+... ....   ...
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            45677778999999999999998877743443333222222  45666667889999999999988774 3221   111


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCc----------e-eEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES----------C-MSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ....... .+..++.+..++.+..+|+++++.+.........          + ..+.+. ++ .++.++.++.+..+|+
T Consensus       114 ~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~  190 (238)
T PF13360_consen  114 SSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDL  190 (238)
T ss_dssp             --SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEET
T ss_pred             cccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEEC
Confidence            2222222 3567777778999999999999887666543221          1 222333 34 6777777776444499


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+++.+.... .......      ..+ .+..|+.++.++.|..||+.+|+..
T Consensus       191 ~tg~~~w~~~-~~~~~~~------~~~-~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  191 ATGEKLWSKP-ISGIYSL------PSV-DGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTTEEEEEEC-SS-ECEC------EEC-CCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEec-CCCccCC------cee-eCCEEEEEeCCCEEEEEECCCCCEE
Confidence            9998654332 2221110      112 4666666668999999999999873

...

>KOG2066|consensus

Probab=99.17  E-value=4.8e-09  Score=84.19  Aligned_cols=178  Identities=12%  Similarity=0.134  Sum_probs=127.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      +++++-|+.+|.|++.+.+... ...+.|...      ..+| .++++|+.||+|.|-.+-+.+....+.- ..++.+++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksia  119 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIA  119 (846)
T ss_pred             cceeeeccccceEEEEecCCcc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCccceeEec-CCcceeEE
Confidence            5789999999999999987544 444456544      5566 7999999999999999888876655533 56899999


Q ss_pred             EcCC----CCCeEEEecCCCcEEEEecCCC--ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         87 FNPV----EARLVATANSKDGIALYDTRKP--KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        87 ~~~~----~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      ++|+    ..+.+++|+..| +.++.-+-.  +.........++|.++.|.  |++++-++.+| |++||+.+.+.+..+
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence            9994    257889998888 777764422  1222344577899999995  68999998888 999999998887777


Q ss_pred             ccC-Ccc-cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        161 DHE-GYY-NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       161 ~~~-~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ..+ ..+ ...--..+.|.+  ...|+.| ...+|+|..++.
T Consensus       196 ~~p~~~~R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  196 PPPSQSVRPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             CCCCCCCCcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence            322 222 222222356654  4556665 445788888873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.17  E-value=1.8e-08  Score=76.76  Aligned_cols=150  Identities=12%  Similarity=0.084  Sum_probs=119.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC-EEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG-RVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +|.+++..| -|+..|.+...+-.+ ..++.+.|.-..+.-++ +-++.|..|| .+-|+|.++++ +..+...-+.|.+
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeE-EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence            567777777 467777776654433 34677889999998887 5888899998 89999999887 4455556778999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC----CcEEEECCCCCcceec
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL----PPVLYNTRSSSPVAQF  160 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~v~d~~~~~~~~~~  160 (224)
                      +..++ +++.++.+.....+.+.|+.+++....-....+-|+...|+|++++++-+--+|    .|+++|..+++.....
T Consensus       407 v~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         407 VKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            99999 899999998888999999999976655556778899999999999998765444    5899999987766554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.16  E-value=1.2e-07  Score=67.88  Aligned_cols=199  Identities=14%  Similarity=0.080  Sum_probs=124.7

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCC--ceeeEE----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASG--DPIDFY----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      +|..++|++||.- .|..|.|=..++.  ..+...    .-.-.=..++|+||+ .+||.+...|+|+++|+.... +..
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccce-eEE
Confidence            4567788877765 5777888776543  122211    223345789999999 899999999999999987433 222


Q ss_pred             ecc-------CCcCeEEEEEcCCC-----CCeEEEecCCCcEEEEecCC-----CceeeEee--c-CCCceeEEEEcCCC
Q psy11351         75 LAV-------NSGPFHAVMFNPVE-----ARLVATANSKDGIALYDTRK-----PKEVLMQY--G-SCESCMSIRFNKAG  134 (224)
Q Consensus        75 ~~~-------~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~--~-~~~~v~~~~~~~~~  134 (224)
                      +..       -...|..+.|-+..     ...|+.-...|.++=|-+..     .+....+.  . ....|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            221       12466777665522     22455555777777666532     12222222  2 46789999999998


Q ss_pred             CeEeeeecC-C----------CcEEEECCCCCcceec--ccCCcc-----------------------cceeeeEEEEeC
Q psy11351        135 TQLLGLRRR-L----------PPVLYNTRSSSPVAQF--DHEGYY-----------------------NSCTMKSCCFAG  178 (224)
Q Consensus       135 ~~l~~~~~d-~----------~v~v~d~~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~~  178 (224)
                      +.|++|+.. .          -+..|.+-++.+....  ..+..+                       ..-.+..+..+|
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            888776531 1          2667766544333221  000000                       011134577788


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       ++..|++...+|.|.+|++++-++
T Consensus       240 -dg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  240 -DGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             -CCCEEEEEEcCCeEEEEecCcchh
Confidence             799999999999999999998765

>KOG1064|consensus

Probab=99.15  E-value=1.4e-10  Score=99.86  Aligned_cols=146  Identities=12%  Similarity=0.163  Sum_probs=114.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEe---cCCCEEEEEecCCccc-ceeecc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASA---CDDGRVLLFDTRSREE-ATELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~-~~~~~~   77 (224)
                      .++..|+.+..+..||.+.+|............|.....++.|-.   ..++++   +.++.+.+||...... -..-..
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeee
Confidence            456778888889999999999998433333337888999999885   466665   4578999999754332 112278


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      |.+.++++++.| ..++|++|+.+|.|++||++..+..+.+..         +. ...++++++..|.++||++.....+
T Consensus      2335 H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             cCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence            999999999999 899999999999999999997765554443         44 5679999999999999999988777


Q ss_pred             eecc
Q psy11351        158 AQFD  161 (224)
Q Consensus       158 ~~~~  161 (224)
                      ..+.
T Consensus      2404 ~~~p 2407 (2439)
T KOG1064|consen 2404 HTFP 2407 (2439)
T ss_pred             hcCc
Confidence            7773

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=7.1e-08  Score=75.54  Aligned_cols=188  Identities=9%  Similarity=0.059  Sum_probs=113.0

Q ss_pred             CCcceE-EEEEeC---CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC--CEEEEEecCCcccceeecc
Q psy11351          4 GDPIKV-LRVIGN---DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD--GRVLLFDTRSREEATELAV   77 (224)
Q Consensus         4 ~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~   77 (224)
                      +++|+. ++..+.   +..|.++|+.+++........+......|+|+|..++++.+.+  ..|.++|+.+++. ..+..
T Consensus       196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~  274 (419)
T PRK04043        196 ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN  274 (419)
T ss_pred             CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc
Confidence            455653 554333   3569999999988777665666677788999995555555544  5677778877653 34443


Q ss_pred             CCcCeEEEEEcCCCCCeE-EEecCCC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC---------CC
Q psy11351         78 NSGPFHAVMFNPVEARLV-ATANSKD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---------LP  145 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l-~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~  145 (224)
                      +........|+| +++.+ ++....+  .|.++|+.+++....... ...  ...|+|+|++++.....         ..
T Consensus       275 ~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~  350 (419)
T PRK04043        275 YPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFN  350 (419)
T ss_pred             CCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcE
Confidence            333334568999 66544 4444444  477778876654222221 111  24899999988776543         25


Q ss_pred             cEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC-CC--CeEEEEeCCCCCe
Q psy11351        146 PVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DD--FVLYMWRVPRDDI  203 (224)
Q Consensus       146 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d--~~v~iw~~~~~~~  203 (224)
                      |.+.|+.++.. ..+...+...     ...|+| +++.++-.+ ..  ..+.+.++.....
T Consensus       351 I~v~d~~~g~~-~~LT~~~~~~-----~p~~SP-DG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        351 LYLISTNSDYI-RRLTANGVNQ-----FPRFSS-DGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             EEEEECCCCCe-EECCCCCCcC-----CeEECC-CCCEEEEEEccCCcEEEEEEecCCCee
Confidence            78888887754 3332222111     256888 576554333 22  3466777766543

>KOG0309|consensus

Probab=99.13  E-value=3.8e-10  Score=89.78  Aligned_cols=141  Identities=19%  Similarity=0.266  Sum_probs=104.4

Q ss_pred             EEEeCCCcEEEEeCCC--CceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCcCeEEE
Q psy11351         11 RVIGNDDHVISHDMAS--GDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPFHAV   85 (224)
Q Consensus        11 ~~~~~dg~i~iwd~~~--~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~   85 (224)
                      ++......-.+|++..  ...+..+  +|+.+|+++.|+|+.+..+++++.|-.+..||+++.. ++.....-......+
T Consensus        85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            3333445667888753  3344444  8999999999999999999999999999999999875 344444444567889


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCcee-eEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEV-LMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~  152 (224)
                      +|+-.++..+++ +....+.+||++.+..+ ..+.+|...+..++|... ...+.+++.|++|+.||.+
T Consensus       165 kwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  165 KWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             eecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            999855555554 46778999999987654 445567778888888653 4466778889999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.12  E-value=7.9e-07  Score=67.43  Aligned_cols=201  Identities=9%  Similarity=0.067  Sum_probs=123.7

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec---------CCCEEEEEecCCcccceeeccCCc-------
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC---------DDGRVLLFDTRSREEATELAVNSG-------   80 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~-------   80 (224)
                      ++|.+.|..+++.+..+.-...-..+ ++|++..+.++.+         .+..|.+||..+.+.+..+.....       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            89999999999998888433333345 9999955555556         689999999999998877753222       


Q ss_pred             CeEEEEEcCCCCCeEEEec-C-CCcEEEEecCCCceeeEeecC-------------------------------CCceeE
Q psy11351         81 PFHAVMFNPVEARLVATAN-S-KDGIALYDTRKPKEVLMQYGS-------------------------------CESCMS  127 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~~~~~~~~~~~-------------------------------~~~v~~  127 (224)
                      .-..++++| ++++++... . +..|.+.|+.+.+.+.++.-.                               +.....
T Consensus       106 ~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       106 YPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             ccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            234788999 888777665 3 688999999887654432100                               000111


Q ss_pred             E--------------EEcC-CCCeEeeeecCCCcEEEECCCC-----Ccceeccc---CCcccceeeeEEEEeCCCCeEE
Q psy11351        128 I--------------RFNK-AGTQLLGLRRRLPPVLYNTRSS-----SPVAQFDH---EGYYNSCTMKSCCFAGTQDEYV  184 (224)
Q Consensus       128 ~--------------~~~~-~~~~l~~~~~d~~v~v~d~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l  184 (224)
                      .              .|.+ +|+++.+... |.|.+.|+...     +....+..   .+......+.+++++|+.+..+
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            1              1233 6666666655 88999995432     22222211   1122222344578888444444


Q ss_pred             EEc---------CCCCeEEEEeCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        185 VSG---------SDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       185 ~s~---------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      +..         ...+.|.++|..+++..   ....+|+....+.+.|
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi---~~i~vG~~~~~iavS~  308 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRL---RKIELGHEIDSINVSQ  308 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEE---EEEeCCCceeeEEECC
Confidence            423         12258999999998875   1112256665555544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315|consensus

Probab=99.12  E-value=9e-09  Score=79.45  Aligned_cols=134  Identities=16%  Similarity=0.237  Sum_probs=97.7

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEE--ecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeE
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFAS--ACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLV   95 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l   95 (224)
                      ++++.+++..++...+.-.++|.++.|+|++ .-|++  |-.=.++.|+|++ ++++..+.  +++=+++-|+| .++++
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEE
Confidence            5777787744554445678999999999998 44443  4455688899987 55555553  45668999999 88888


Q ss_pred             EEecCC---CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec------CCCcEEEECCCCCccee
Q psy11351         96 ATANSK---DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR------RLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        96 ~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~v~d~~~~~~~~~  159 (224)
                      +.++.+   |.+-+||+.+.+.+..+...  .-+-+.|+|||++++++..      |+.++||+.. |..+..
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~  396 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHE  396 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeeh
Confidence            877654   77999999987665555433  3355799999999999864      6779999985 444443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=1.9e-08  Score=86.81  Aligned_cols=149  Identities=9%  Similarity=0.104  Sum_probs=106.0

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEec---------------cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLH---------------ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      .+.++++.+.++.|++||..++......+.               -.....++++|++..++++-+.++.|++||+.++.
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            466777778889999999987654322111               12456799999984577777888999999998764


Q ss_pred             cceee-------------ccC--------CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec---------
Q psy11351         71 EATEL-------------AVN--------SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---------  120 (224)
Q Consensus        71 ~~~~~-------------~~~--------~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---------  120 (224)
                      .....             -..        -..-..+++++ ++.++++-+.++.|++||..++... .+.+         
T Consensus       774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG  851 (1057)
T PLN02919        774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDG  851 (1057)
T ss_pred             EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCC
Confidence            21100             000        01235788999 7888888889999999999876433 2221         


Q ss_pred             -----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351        121 -----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus       121 -----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                           .-.....++++++|+.+++-+.++.|++||+++++.
T Consensus       852 ~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        852 KALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                 112567899999999888888889999999988764

>KOG0309|consensus

Probab=99.08  E-value=9.4e-10  Score=87.62  Aligned_cols=192  Identities=15%  Similarity=0.235  Sum_probs=130.3

Q ss_pred             CCcceEEEEEeCCCcEEEEeCC-CCceeeEEecc--CCeeEEEEcCCC--CcEEEEecCCCEEEEEecCCcc---cceee
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMA-SGDPIDFYLHE--RPVYGLSVDPSQ--DAIFASACDDGRVLLFDTRSRE---EATEL   75 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~--~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~---~~~~~   75 (224)
                      +..|+-+|.++.-| +.+.|+. ...+-+.+.|.  -.|-.+.|+|..  +..+++.+.. .-.+|++....   ....+
T Consensus        33 ~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~~aIef~l  110 (1081)
T KOG0309|consen   33 NPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSSNAIEFVL  110 (1081)
T ss_pred             ccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCCccceEEEE
Confidence            44455566666555 4555554 34444444443  346678888653  3466666654 44579885432   23345


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .+|...|+.+-|+|+....+++++.|-.+..||+++...+.... .-......|+|+-....+++.+..+.|.+||++.|
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG  190 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence            68999999999999999999999999999999999876544333 33445678999876555555666777999999876


Q ss_pred             C-cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        155 S-PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       155 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      . ++..+ +|...++.+.+...     ....+.+.+.|++|+.||.....
T Consensus       191 s~pl~s~K~~vs~vn~~~fnr~-----~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  191 STPLCSLKGHVSSVNSIDFNRF-----KYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             CcceEEecccceeeehHHHhhh-----hhhhhcccCCCCceeeecccccc
Confidence            4 44444 45555666554432     34458899999999999987653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.08  E-value=5.4e-08  Score=75.58  Aligned_cols=184  Identities=13%  Similarity=0.077  Sum_probs=115.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe----
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF----   82 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i----   82 (224)
                      +..++.++.++.+..+|.++|+.+......+.+.+.-.. .+ ..++.++.++.+..||.++++.+..++.....+    
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            456777778889999998888877665433333321111 13 466677789999999999998777664432211    


Q ss_pred             -EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-C---Cc---eeEEEEcC--CCCeEeeeecCCCcEEEECC
Q psy11351         83 -HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-C---ES---CMSIRFNK--AGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        83 -~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~---~~---v~~~~~~~--~~~~l~~~~~d~~v~v~d~~  152 (224)
                       .+....  + ..++.+..++.+..+|.++++........ .   ..   ...+.-+|  .+..+++++.++.++.+|..
T Consensus       183 ~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       183 SASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             CCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence             111121  2 36677888899999999988755433210 0   00   00011111  25677888889999999999


Q ss_pred             CCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++.+........ ..     ...   .+..++.++.||.+..+|..+++..
T Consensus       260 tG~~~W~~~~~~~-~~-----p~~---~~~~vyv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       260 SGRVLWKRDASSY-QG-----PAV---DDNRLYVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             CCcEEEeeccCCc-cC-----ceE---eCCEEEEECCCCeEEEEECCCCcEE
Confidence            9987766542221 11     111   3566777788999999999988763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714|consensus

Probab=99.06  E-value=1.7e-09  Score=76.08  Aligned_cols=76  Identities=22%  Similarity=0.341  Sum_probs=67.5

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                      ...|.+++-+|...+++++|+.||.+-+||.+... +...++.|+.+|.-+-|+|.++..|+++++||.+..||..+
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            34599999999876889999999999999999875 45567899999999999999999999999999999999874

>KOG1275|consensus

Probab=99.05  E-value=7.1e-09  Score=84.40  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=129.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEec-cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLH-ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ...++-|+-...+..+|+++.+..+...- .+.|+-+..+  + ..+++|...|+|.+-|.++.+.++++..|.+.|.++
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            34567777777888999998887777633 2346666654  3 789999999999999999999999999999999988


Q ss_pred             EEcCCCCCeEEEecC---------CCcEEEEecCCCceeeEeecCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCC-C
Q psy11351         86 MFNPVEARLVATANS---------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRS-S  154 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~-~  154 (224)
                      ..   .+++|++++.         |..|++||+|+.+.+..+.-+.++ .-+.|.|. ...+++++..|...+-|..+ +
T Consensus       224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence            76   4577887764         455899999987665544434333 44678886 45778888889999988432 1


Q ss_pred             Cc-c--eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        155 SP-V--AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       155 ~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      .+ .  ..+ .....     +...++++ +++.++.|..+|.|.+|.
T Consensus       300 NP~~~~~~v~p~~s~-----i~~fDiSs-n~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSG-----ISAFDISS-NGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCccceeEEccCCCc-----ceeEEecC-CCceEEEecccCcEeeec
Confidence            22 1  111 11222     33456666 799999999999999997

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.05  E-value=1.4e-09  Score=78.54  Aligned_cols=163  Identities=18%  Similarity=0.258  Sum_probs=111.3

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---ceeeccCC-----cCeEEEEEcCCCCCeEEEecCCCcEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---ATELAVNS-----GPFHAVMFNPVEARLVATANSKDGIA  105 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~dg~v~  105 (224)
                      .|...++++.|+.+. ..++++. |=.|.+|++.....   +..++.|.     .-|++..|+|...+.+...+..|.|+
T Consensus       170 aH~yhiNSiS~NsD~-et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         170 AHPYHINSISFNSDK-ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cceeEeeeeeecCch-heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            578889999999987 5776654 78999999865431   22233333     46899999998888888899999999


Q ss_pred             EEecCCCce------eeE----------eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC-Ccceecc-cCC---
Q psy11351        106 LYDTRKPKE------VLM----------QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS-SPVAQFD-HEG---  164 (224)
Q Consensus       106 i~d~~~~~~------~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~-~~~~~~~-~~~---  164 (224)
                      +-|+|....      +..          +.+-...|..+.|+++|+++++-+. -+|++||.+.. .++.++. |..   
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            999995321      111          1123357788999999999988654 46999999764 4555552 211   


Q ss_pred             ccc-----ce--eeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        165 YYN-----SC--TMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       165 ~~~-----~~--~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .++     ..  .--.+.|+. +...+++|+.....-+|-..+
T Consensus       327 ~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecccc
Confidence            111     11  122466776 577888888888777776444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.05  E-value=3e-09  Score=76.81  Aligned_cols=199  Identities=12%  Similarity=0.117  Sum_probs=130.3

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCc-e-----------------eeEEeccCCeeEEEEcC-CCCcEEEEecCCCEEEEE
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGD-P-----------------IDFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLF   64 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~-~-----------------~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iw   64 (224)
                      +..|.||++|...|.|.++.-+... +                 ++.+.....|..+.|.. .+.+.++..+.|++|++|
T Consensus        35 d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlW  114 (460)
T COG5170          35 DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLW  114 (460)
T ss_pred             ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeee
Confidence            4668899999999999999865432 1                 11112346788888874 444677778889999999


Q ss_pred             ecCCcc-------------------cc-----------------------eee-ccCCcCeEEEEEcCCCCCeEEEecCC
Q psy11351         65 DTRSRE-------------------EA-----------------------TEL-AVNSGPFHAVMFNPVEARLVATANSK  101 (224)
Q Consensus        65 d~~~~~-------------------~~-----------------------~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d  101 (224)
                      .+....                   ++                       +.. ..|.--|.++.|+. +...++++ .|
T Consensus       115 Kiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-Dd  192 (460)
T COG5170         115 KIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DD  192 (460)
T ss_pred             eeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cc
Confidence            986431                   00                       001 24555688999998 77777776 67


Q ss_pred             CcEEEEecCCCceeeE---eecC-----CCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcc------eecc-----
Q psy11351        102 DGIALYDTRKPKEVLM---QYGS-----CESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPV------AQFD-----  161 (224)
Q Consensus       102 g~v~i~d~~~~~~~~~---~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~------~~~~-----  161 (224)
                      =.|.+|++........   +..|     ..-|++..|+|.. +.+.-.+..|.|++-|++.....      ....     
T Consensus       193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~  272 (460)
T COG5170         193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD  272 (460)
T ss_pred             eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence            7899999875433222   2233     2457888999974 34455667899999999853211      1110     


Q ss_pred             ---cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeEeeee
Q psy11351        162 ---HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD  208 (224)
Q Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~  208 (224)
                         ..+.+.+  ++...|++ +++++++-+. -+|++||++..+..+.+.
T Consensus       273 ~~ff~eivsS--ISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         273 VDFFEEIVSS--ISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             chhHHHHhhh--hcceEEcC-CCcEEEEecc-ceEEEEecccccCCceee
Confidence               1122222  45577887 6899888654 489999999876644443

>KOG0882|consensus

Probab=99.05  E-value=4.6e-09  Score=79.20  Aligned_cols=195  Identities=14%  Similarity=0.083  Sum_probs=134.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCce---eeEE-eccCCeeEEEEcCCCCcEEEEecC-CCEEEEEecCCcccceeecc--CC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDP---IDFY-LHERPVYGLSVDPSQDAIFASACD-DGRVLLFDTRSREEATELAV--NS   79 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~--~~   79 (224)
                      .+++.+++.||.++.|.-..-+-   +..+ .|...+.+++.+-++ .++.|.+. |..++++|+++-..+.-++.  -.
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            46899999999999998654232   2233 788999999999998 78899777 99999999987665433321  22


Q ss_pred             cCeEEEEEcCCCC-CeEE-EecCCCcEEEEecCCCceee-Eee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC--
Q psy11351         80 GPFHAVMFNPVEA-RLVA-TANSKDGIALYDTRKPKEVL-MQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS--  153 (224)
Q Consensus        80 ~~i~~~~~~~~~~-~~l~-~~~~dg~v~i~d~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~--  153 (224)
                      +.+.. ..++.+. ..++ +.-.++.+.++|-+...+.. .+. -|..+|.++.+.+.+..+++....|-|..|..+.  
T Consensus        99 g~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~  177 (558)
T KOG0882|consen   99 GFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF  177 (558)
T ss_pred             CceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcc
Confidence            22222 2223111 1333 33467889999987654333 333 3899999999999999999999999999998763  


Q ss_pred             ----CCcceecccCCccc-----ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 ----SSPVAQFDHEGYYN-----SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                          .+....++|.....     .-.....+|+| ++..+.+-+.|..|++++.++|+..
T Consensus       178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence                11112222221111     11123467787 7999999999999999999999874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.04  E-value=1.2e-07  Score=73.69  Aligned_cols=185  Identities=10%  Similarity=0.024  Sum_probs=117.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCee-EEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVY-GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +..++.++.+|.+.-+|..+|+.+..+.....+. ....  ++ ..++.++.++.+..+|..+++.+....... .+.+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~  140 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP  140 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cC-CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence            4567888889999999999999887663333222 2222  34 577788889999999999999876654322 22221


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCce-----eEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESC-----MSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      -..  .+..++.++.++.+..+|.++++............     .+....  +..++.+..++.+..+|+++|+.+...
T Consensus       141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence            111  23456667789999999999987665554322111     111111  346777778889999999999876554


Q ss_pred             ccCCc-----c---cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGY-----Y---NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~-----~---~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .....     .   ..+.-.+ ..   .+..++.++.+|.++.||..+++.
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p-~~---~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDP-VV---DGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             ccccCCCCCchhhhhccCCcc-EE---ECCEEEEEEcCCEEEEEECCCCcE
Confidence            21110     0   0000011 11   245667777899999999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645|consensus

Probab=99.04  E-value=2.5e-08  Score=74.29  Aligned_cols=94  Identities=11%  Similarity=0.170  Sum_probs=78.0

Q ss_pred             EEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEE
Q psy11351         19 VISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVAT   97 (224)
Q Consensus        19 i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~   97 (224)
                      +++.+..+.+..... .+...|.+++|+|..+-++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-++..++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            444444444444433 678899999999988558999999999999999999888888776 789999999978889999


Q ss_pred             ecCCCcEEEEecCCCc
Q psy11351         98 ANSKDGIALYDTRKPK  113 (224)
Q Consensus        98 ~~~dg~v~i~d~~~~~  113 (224)
                      |..+|.|.+||+|..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            9999999999999754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.3e-06  Score=64.55  Aligned_cols=190  Identities=10%  Similarity=0.155  Sum_probs=123.8

Q ss_pred             CCCCcceEEEEEeC-CCcEEEEeCCC-Ccee---eEEeccCC----------eeEEEEcCCCCcEEEEec-CCCEEEEEe
Q psy11351          2 ASGDPIKVLRVIGN-DDHVISHDMAS-GDPI---DFYLHERP----------VYGLSVDPSQDAIFASAC-DDGRVLLFD   65 (224)
Q Consensus         2 a~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~---~~~~~~~~----------v~~~~~~~~~~~~l~s~~-~d~~i~iwd   65 (224)
                      +.+..+++|+++.. .|.|.++-++. |.+.   ....|.+.          +....+.|++ ++|++.. .-..|.+|+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEE
Confidence            56778888887764 57899999965 4433   33456666          8899999999 6777653 234899999


Q ss_pred             cCCcccc----eeeccCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecCCC-ceeeEee---------cCCCceeEEEE
Q psy11351         66 TRSREEA----TELAVNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTRKP-KEVLMQY---------GSCESCMSIRF  130 (224)
Q Consensus        66 ~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~-~~~~~~~---------~~~~~v~~~~~  130 (224)
                      +..++..    ..++. ...-..|.|+| ++++..... -+++|.+|..... .....+.         ........+..
T Consensus       174 ~~dg~L~~~~~~~v~~-G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         174 LDDGKLTPADPAEVKP-GAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             cccCccccccccccCC-CCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            9977632    12222 34568999999 777666554 5889999998763 2222221         13446678999


Q ss_pred             cCCCCeEeeeec-CCCcEEEECCCCCcceec----ccCCc-ccceeeeEEEEeCCCCeEEEEcCCC-CeEEEEeCCC
Q psy11351        131 NKAGTQLLGLRR-RLPPVLYNTRSSSPVAQF----DHEGY-YNSCTMKSCCFAGTQDEYVVSGSDD-FVLYMWRVPR  200 (224)
Q Consensus       131 ~~~~~~l~~~~~-d~~v~v~d~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d-~~v~iw~~~~  200 (224)
                      +|+|++|+++.. ...|.+|.+....-...+    ...+. ....     .+++ ++++|+++.++ ..|.+|.+..
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-----~i~~-~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-----NINP-SGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-----eeCC-CCCEEEEEccCCCcEEEEEEcC
Confidence            999999998753 346888877543222222    11222 3333     3444 68888777764 4788886654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=8.6e-07  Score=69.52  Aligned_cols=175  Identities=14%  Similarity=0.097  Sum_probs=107.6

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEe-cC--CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCC
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASA-CD--DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR   93 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~--d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~   93 (224)
                      ..|.+-|............ +......|+|++...++.. ..  +..|.++|+.+++..... ...+......|+| +++
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP-DG~  245 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK-DGS  245 (419)
T ss_pred             ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC-CCC
Confidence            3566767665543333333 3788899999994335433 22  467999999888754333 3455566788999 665


Q ss_pred             -eEEEecCC--CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-C--CcEEEECCCCCcceecccCCccc
Q psy11351         94 -LVATANSK--DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-L--PPVLYNTRSSSPVAQFDHEGYYN  167 (224)
Q Consensus        94 -~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~v~d~~~~~~~~~~~~~~~~~  167 (224)
                       ++++.+.+  ..|.++|+..++ ...+..+........|+|||+.|+..+.. +  .|++.|+.+++...... .+..+
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~~  323 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKNN  323 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCcC
Confidence             44455444  457777887664 34444444334456899999987776532 3  47777887776533322 22211


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCC---------CeEEEEeCCCCCe
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDD---------FVLYMWRVPRDDI  203 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d---------~~v~iw~~~~~~~  203 (224)
                            ..|+| +++.++..+..         ..|.+.|+.+++.
T Consensus       324 ------~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        324 ------SSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             ------ceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence                  26788 57765544332         3788889888765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.01  E-value=1.2e-09  Score=55.58  Aligned_cols=37  Identities=19%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEe
Q psy11351         28 DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFD   65 (224)
Q Consensus        28 ~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd   65 (224)
                      +++..+ +|.+.|++++|+|++ ++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            455556 899999999999998 8999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.00  E-value=1.6e-09  Score=55.10  Aligned_cols=39  Identities=15%  Similarity=0.389  Sum_probs=36.1

Q ss_pred             cccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEe
Q psy11351         69 REEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYD  108 (224)
Q Consensus        69 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d  108 (224)
                      ++++..+++|.+.|.+++|+| ++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            356788999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.97  E-value=1e-07  Score=69.22  Aligned_cols=181  Identities=14%  Similarity=0.089  Sum_probs=110.9

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCeeEEE--EcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCC
Q psy11351         15 NDDHVISHDMASGDPIDFYLHERPVYGLS--VDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA   92 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~   92 (224)
                      .+|+|..||..+++.+.............  ..+++ ..+++++.++.+..||..+|+.+..+.. ...+......  .+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~   76 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DG   76 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET-TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ET
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cc
Confidence            37899999999999888774422222222  22234 5677778899999999999998777654 2221111111  23


Q ss_pred             CeEEEecCCCcEEEEecCCCceeeEe-ecCC---CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcc--
Q psy11351         93 RLVATANSKDGIALYDTRKPKEVLMQ-YGSC---ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYY--  166 (224)
Q Consensus        93 ~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~--  166 (224)
                      ..++.++.++.+..+|.++++..... ....   ..........++..++++..++.+..+|+++|+.+.........  
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            45555557789999999999887774 3221   11122233334788888888999999999999988777322211  


Q ss_pred             cce-----eeeEEEEeCCCCeEEEEcCCCCe-EEEEeCCCCCe
Q psy11351        167 NSC-----TMKSCCFAGTQDEYVVSGSDDFV-LYMWRVPRDDI  203 (224)
Q Consensus       167 ~~~-----~~~~~~~~~~~~~~l~s~~~d~~-v~iw~~~~~~~  203 (224)
                      ..+     ......+.  ++ .+..++.++. +.+ |+.+++.
T Consensus       157 ~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~  195 (238)
T PF13360_consen  157 SPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEK  195 (238)
T ss_dssp             --EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEE
T ss_pred             cceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCE
Confidence            100     01112222  34 5555566664 555 9999974

...

>KOG1275|consensus

Probab=98.97  E-value=1e-08  Score=83.57  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=114.5

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCC---------CEEEEEecCCccccee
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDD---------GRVLLFDTRSREEATE   74 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~   74 (224)
                      .+++++.+|...|+|.+-|.++.+.++.+ .|++.+.+++..  | ++|++++..         .-|++||+|.-+.+..
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            35688999999999999999999999998 899999887765  5 788888754         5578999998876666


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce----eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE----VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      +.-+.++ .-+.|+|.-...++.++..|...+-|..+...    ...+......+..++++++++.++.+..+|.|.+|.
T Consensus       262 I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  262 IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            6555554 56788996678899999999999999433222    222333455699999999999999999999999997


Q ss_pred             C
Q psy11351        151 T  151 (224)
Q Consensus       151 ~  151 (224)
                      -
T Consensus       341 ~  341 (1118)
T KOG1275|consen  341 D  341 (1118)
T ss_pred             C
Confidence            3

>KOG2041|consensus

Probab=98.95  E-value=7.1e-09  Score=82.61  Aligned_cols=159  Identities=9%  Similarity=0.053  Sum_probs=120.3

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---------------cceeeccCCcCeEEEEEcCCCCCeEEEec
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---------------EATELAVNSGPFHAVMFNPVEARLVATAN   99 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~   99 (224)
                      ......|+.|+... .++++|+.||.+++..+.+..               .-+++.+|...|.-+.|+. ..+.|.+..
T Consensus        13 nnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccC
Confidence            45678899999987 799999999999999876532               1246789999999999998 788899999


Q ss_pred             CCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEe
Q psy11351        100 SKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA  177 (224)
Q Consensus       100 ~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (224)
                      .+|.|.+|-+-++.-.....  ..++-|.+++|+.+|..+.....||.|.+=.++..+.- --...+.    ....+.|+
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw-gKeLkg~----~l~hv~ws  165 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW-GKELKGQ----LLAHVLWS  165 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-chhcchh----eccceeec
Confidence            99999999998775433333  25677899999999999999999998887776643321 1111111    12236777


Q ss_pred             CCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        178 GTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       178 ~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      + |...++.+-.+|.+.+||.+..
T Consensus       166 ~-D~~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  166 E-DLEQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             c-cHHHHHhhhcCCcEEEeccccc
Confidence            7 6777777778899999987654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.5e-06  Score=64.19  Aligned_cols=182  Identities=13%  Similarity=0.123  Sum_probs=118.3

Q ss_pred             CCcEEEEeCCCC--c--eeeEEeccCCeeEEEEcCCCCcEEEEecC---CCEEEEEecCC--cccc--eeeccCCcCeEE
Q psy11351         16 DDHVISHDMASG--D--PIDFYLHERPVYGLSVDPSQDAIFASACD---DGRVLLFDTRS--REEA--TELAVNSGPFHA   84 (224)
Q Consensus        16 dg~i~iwd~~~~--~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~--~~~~--~~~~~~~~~i~~   84 (224)
                      +.-|.+|++.+.  +  ........+..+-++|+|++ ++|.++-.   +|.|..|.+..  |+..  ........+-+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            567999999743  2  23344778889999999998 67777644   47777777654  4421  111122233388


Q ss_pred             EEEcCCCCCeEEEec-CCCcEEEEecCCCceee---EeecCCCc----------eeEEEEcCCCCeEeeeec-CCCcEEE
Q psy11351         85 VMFNPVEARLVATAN-SKDGIALYDTRKPKEVL---MQYGSCES----------CMSIRFNKAGTQLLGLRR-RLPPVLY  149 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~---~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~v~v~  149 (224)
                      +++++ ++++++++. ..|.|.++-++....+.   ....|.+.          +....+.|++++|++... -..|.+|
T Consensus        94 vsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          94 VSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            99999 787887775 45789999997633322   22334444          788999999999998753 2349999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE-cCCCCeEEEEeCCCC
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS-GSDDFVLYMWRVPRD  201 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~v~iw~~~~~  201 (224)
                      ++..+++...-...- .....-..+.|+| ++++... .-.+++|.+|..+..
T Consensus       173 ~~~dg~L~~~~~~~v-~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         173 DLDDGKLTPADPAEV-KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EcccCcccccccccc-CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCC
Confidence            998775543321100 0111122377777 6777544 446999999999884

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=2.8e-06  Score=62.04  Aligned_cols=187  Identities=12%  Similarity=0.080  Sum_probs=116.0

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEc-CCCCcEEEEecCCCEEEEEecCCcccceeecc-----CC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVD-PSQDAIFASACDDGRVLLFDTRSREEATELAV-----NS   79 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~   79 (224)
                      .+.++.+-...+.|..|+..+++..... ... ...+.+. +++ .+++ +..+ .+.++|..+++.......     ..
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-~~G~~~~~~~g-~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~   85 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG-PNGMAFDRPDG-RLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPF   85 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEE-SSS-EEEEEEECTTS-EEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCT
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC-CceEEEEccCC-EEEE-EEcC-ceEEEecCCCcEEEEeeccCCCccc
Confidence            5777778778899999999887654432 222 7788888 665 4544 4444 445559888764333222     33


Q ss_pred             cCeEEEEEcCCCCCeEEEecCC--------CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEee-eecCCCcEEEE
Q psy11351         80 GPFHAVMFNPVEARLVATANSK--------DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG-LRRRLPPVLYN  150 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~v~d  150 (224)
                      ...+.+++.| ++++.++....        |.+..++.. ++ .......-.....++|+|+++.|+. -+..+.|..++
T Consensus        86 ~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   86 NRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             EEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEe
Confidence            5688999999 78877776543        557777766 43 3333333456689999999997765 45667788888


Q ss_pred             CCCCCc-c---eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        151 TRSSSP-V---AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       151 ~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +..... +   ..+ ......  -...-+++.. ++++.++....+.|.+++.+ |+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~--g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGP--GYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSS--CEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             ccccccceeeeeeEEEcCCCC--cCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEE
Confidence            853322 1   112 111111  0122345555 68888887788999999987 6653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832|consensus

Probab=98.88  E-value=1e-09  Score=89.16  Aligned_cols=180  Identities=19%  Similarity=0.207  Sum_probs=130.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCC-EEEEEecCC-cccceeeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDG-RVLLFDTRS-REEATELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~-~~~~~~~~~~   78 (224)
                      |+.-..+.|+.|+..|.|+++++.+|.....+ .|.++|+-+.-+.+|...|.+++... -..+|+..+ +.+.+.+.+ 
T Consensus      1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e- 1186 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE- 1186 (1516)
T ss_pred             EeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc-
Confidence            44455678999999999999999999888777 89999999999999855555555544 567899864 455566643 


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                         -.++.|+. ....-+.|+......+||+.+..++..+..    ....-.+..|+|+...++-   ||  .+||++..
T Consensus      1187 ---d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1187 ---DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIP 1257 (1516)
T ss_pred             ---cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccH
Confidence               46889988 556666677777899999999877666432    2233377899999887763   55  68999998


Q ss_pred             Ccceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        155 SPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.+..|. .....      .-.|+| ++..++..+     -|||+++-+.
T Consensus      1258 ~aIh~FD~ft~~~------~G~FHP-~g~eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1258 EAIHRFDQFTDYG------GGGFHP-SGNEVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred             HHHhhhhhheecc------cccccC-CCceEEeec-----hhhhhHHHHH
Confidence            8888873 22111      145677 577776654     3788887554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.87  E-value=8.1e-07  Score=63.73  Aligned_cols=159  Identities=9%  Similarity=0.095  Sum_probs=107.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-------eccCCeeEEEEcCCC-----CcEEEEecCCCEEEEEecCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-------LHERPVYGLSVDPSQ-----DAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      +.+.++.+||.+...|+|+++|+...+....-       .-..+|-.+.|.+..     ...|+.-..+|.++-|-+..+
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g  129 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG  129 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence            45678889999999999999999865433211       234567777776432     135666677888888876432


Q ss_pred             --c---cceee---ccCCcCeEEEEEcCCCCCeEEEecC-CC----------cEEEEecCCCceee--------------
Q psy11351         70 --E---EATEL---AVNSGPFHAVMFNPVEARLVATANS-KD----------GIALYDTRKPKEVL--------------  116 (224)
Q Consensus        70 --~---~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~-dg----------~v~i~d~~~~~~~~--------------  116 (224)
                        +   ..+.+   ..+...|.++.++| ..++|+.|+. ..          .+.-|.+-++.+-.              
T Consensus       130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~  208 (282)
T PF15492_consen  130 TNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS  208 (282)
T ss_pred             cCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence              1   22222   12456899999999 6666666642 11          25566543321100              


Q ss_pred             ------E-----e----ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc
Q psy11351        117 ------M-----Q----YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus       117 ------~-----~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~  161 (224)
                            .     +    ......|..|..||||+.|++...+|.|.+|++.+-++...+.
T Consensus       209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                  0     0    1135678999999999999999999999999999888877774

>KOG1912|consensus

Probab=98.87  E-value=1.2e-07  Score=76.36  Aligned_cols=159  Identities=16%  Similarity=0.134  Sum_probs=122.7

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCC-----------CCCeEEEecCCCc
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPV-----------EARLVATANSKDG  103 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~l~~~~~dg~  103 (224)
                      |...-.+++|+|.|  +++-|+. ..|.+-|.++-+.++.+..|+..|+.+.|.|.           ...++|++...|.
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            33446788999987  7887775 58999999999999999999999999999873           1236788888999


Q ss_pred             EEEEecCCCceeeEeecCCCceeEEEEcCC---C-CeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCC
Q psy11351        104 IALYDTRKPKEVLMQYGSCESCMSIRFNKA---G-TQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGT  179 (224)
Q Consensus       104 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (224)
                      |.+||.........+..+..++..++|-+.   . ..|++-....++.+|+..+|+..........+    .++..+.|-
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i----Ls~f~~DPf  166 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI----LSCFRVDPF  166 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc----eeeeeeCCC
Confidence            999999988777888888999999998763   4 45666677788999999999988877433322    233455555


Q ss_pred             CCeEEEEcCCCCeEEEEeCCC
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +.+.+..-+..|.+.+-+.-.
T Consensus       167 d~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  167 DSRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             CcceEEEEccCceEEEEeccC
Confidence            666777667778887776543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.86  E-value=2.2e-06  Score=62.65  Aligned_cols=170  Identities=14%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEe------ccCCeeEEEEcCCCCcEEEEecCC--------CEEEEEecCCcccce
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYL------HERPVYGLSVDPSQDAIFASACDD--------GRVLLFDTRSREEAT   73 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~   73 (224)
                      ..++.+..+ .+.++|..+++......      .....+++++.|+| ++.++....        |.|..++.. ++.. 
T Consensus        52 g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-  127 (246)
T PF08450_consen   52 GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-  127 (246)
T ss_dssp             SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEE-
T ss_pred             CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEE-
Confidence            344444444 45666999887655542      34578899999999 677765543        567777776 4432 


Q ss_pred             eeccCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCce----eeEee---cCCCceeEEEEcCCCCeEeeeecCCC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKE----VLMQY---GSCESCMSIRFNKAGTQLLGLRRRLP  145 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~----~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~  145 (224)
                      .+...-...+.++|+| +++.| ++-+..+.|..|++.....    ...+.   ...+..-.+++.++|+..++....+.
T Consensus       128 ~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  128 VVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             EEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             EEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            2323344578999999 66654 5667888899999864322    11221   22234788999999998888777888


Q ss_pred             cEEEECCCCCcceecccCCcccceeeeEEEEeCCC-CeEEEEc
Q psy11351        146 PVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQ-DEYVVSG  187 (224)
Q Consensus       146 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~  187 (224)
                      |.+++.+ |+.+..+.....    ....++|...+ ..+++|.
T Consensus       207 I~~~~p~-G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  207 IVVFDPD-GKLLREIELPVP----RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETT-SCEEEEEE-SSS----SEEEEEEESTTSSEEEEEE
T ss_pred             EEEECCC-ccEEEEEcCCCC----CEEEEEEECCCCCEEEEEe
Confidence            9999988 888777743311    13347774323 4445543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.86  E-value=3.4e-07  Score=71.73  Aligned_cols=115  Identities=10%  Similarity=0.048  Sum_probs=83.3

Q ss_pred             ccCCeeEEEEcCCCCcEEEEe----cCCCE----EEEEecCCcccce--e-eccCCcCeEEEEEcCCCCCeEEEecCCCc
Q psy11351         35 HERPVYGLSVDPSQDAIFASA----CDDGR----VLLFDTRSREEAT--E-LAVNSGPFHAVMFNPVEARLVATANSKDG  103 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~----~~d~~----i~iwd~~~~~~~~--~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  103 (224)
                      -+....++.|+...++.+.+.    +.+|.    -++|++..++...  . --.....+.+++++| +...++.|+.||.
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS  282 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS  282 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe
Confidence            445567788886555566553    23333    3456665544211  1 124567899999999 8899999999999


Q ss_pred             EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351        104 IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus       104 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      |.+||...+...  .....-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus       283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            999999876332  33445667889999999999999999999999975

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.85  E-value=8.4e-07  Score=68.25  Aligned_cols=177  Identities=14%  Similarity=0.142  Sum_probs=115.9

Q ss_pred             eCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEE-ec----------CCCEEEEEecCCcccceeeccCCcC
Q psy11351         14 GNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFAS-AC----------DDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus        14 ~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s-~~----------~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ..++++++|.+..+..+.+. -....=..+.|++.| ++++. .-          ....+.|++++.... .......++
T Consensus       199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~p  276 (561)
T COG5354         199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDP  276 (561)
T ss_pred             CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc-ceecccccc
Confidence            46778899998877766544 223334468888888 44432 21          124677888874432 222255789


Q ss_pred             eEEEEEcCCCCCeEEEe--cCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC---CCcEEEECCCCCc
Q psy11351         82 FHAVMFNPVEARLVATA--NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLYNTRSSSP  156 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~d~~~~~~  156 (224)
                      |...+|.| .++.+++.  -....+.++|++..   ..+...+..=..+.|+|.+++++.++.|   |.+-+||......
T Consensus       277 Vhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         277 VHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             ceeeeecc-cCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            99999999 55555443  46778999999865   2333334444668899999999997755   6689999865433


Q ss_pred             ce-ecccCCcccceeeeEEEEeCCCCeEEEEcCC------CCeEEEEeCCCCCe
Q psy11351        157 VA-QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD------DFVLYMWRVPRDDI  203 (224)
Q Consensus       157 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d~~v~iw~~~~~~~  203 (224)
                      +. .+      .....+.|.|+| +++++.+...      |..++|||+...+.
T Consensus       353 ~~~~~------~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         353 VAGAF------NGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             EEEEe------ecCCceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence            32 33      222234488998 6888766532      78899999876543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.83  E-value=3.3e-06  Score=72.26  Aligned_cols=189  Identities=12%  Similarity=0.127  Sum_probs=119.1

Q ss_pred             eEEEEEeCCCcEEEE----eCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC---------------C
Q psy11351          8 KVLRVIGNDDHVISH----DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR---------------S   68 (224)
Q Consensus         8 ~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------------~   68 (224)
                      ..++.+..+|.|.+.    +....+.-..-..+..|.+++|+||+ .+|+....++++.+.+..               .
T Consensus        88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~  166 (928)
T PF04762_consen   88 ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE  166 (928)
T ss_pred             CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence            346777788999988    54443332222467899999999999 688877778888775421               0


Q ss_pred             --------cccceeecc------------------------CCcCeEEEEEcCCCCCeEEEecC---C---CcEEEEecC
Q psy11351         69 --------REEATELAV------------------------NSGPFHAVMFNPVEARLVATANS---K---DGIALYDTR  110 (224)
Q Consensus        69 --------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~~l~~~~~---d---g~v~i~d~~  110 (224)
                              |+....|.+                        ....-..++|.. |+.++|+.+.   .   +.+++|+-.
T Consensus       167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re  245 (928)
T PF04762_consen  167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE  245 (928)
T ss_pred             CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC
Confidence                    000001100                        222456788999 8999998864   2   569999965


Q ss_pred             CCceeeEeec-CCCceeEEEEcCCCCeEeeeec---CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE
Q psy11351        111 KPKEVLMQYG-SCESCMSIRFNKAGTQLLGLRR---RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       111 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  186 (224)
                       +. +....+ -.+--.+++|.|.|+++++.-.   ...|.+|. ++|.....|..+.......+..+.|++ ++..|+.
T Consensus       246 -G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv  321 (928)
T PF04762_consen  246 -GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAV  321 (928)
T ss_pred             -ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEE
Confidence             43 333222 2233356899999999988754   33466665 345544555322111223345688888 6888888


Q ss_pred             cCCCCeEEEEeCCCCCe
Q psy11351        187 GSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       187 ~~~d~~v~iw~~~~~~~  203 (224)
                      .-.|. |.+|-..+-.-
T Consensus       322 ~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  322 WLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             EecCC-ceEEEeeCCEE
Confidence            76555 99998887644

>KOG2066|consensus

Probab=98.81  E-value=9.9e-07  Score=71.37  Aligned_cols=142  Identities=18%  Similarity=0.271  Sum_probs=103.6

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCC----CCcEEEEecCCCEEEEEecCCc--ccceeecc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPS----QDAIFASACDDGRVLLFDTRSR--EEATELAV   77 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~   77 (224)
                      +..|+++++||.||+|.|-.+-+.+....+....++.+++++|+    ....+++|+..| +.++.-+=-  +....+..
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence            44699999999999999999999998888888899999999997    225899999888 777653311  11123455


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC------ceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE------SCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ..++|.++.|.   ++++|=++.+ .|++||+.+.+.+..+.....      ....+.|.++. .|+.|=. .+|++..+
T Consensus       159 ~eG~I~~i~W~---g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I  232 (846)
T KOG2066|consen  159 GEGPIHSIKWR---GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSI  232 (846)
T ss_pred             CccceEEEEec---CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEE
Confidence            67899999994   5788888655 589999998876655543222      23456777654 4444433 35888888


Q ss_pred             C
Q psy11351        152 R  152 (224)
Q Consensus       152 ~  152 (224)
                      +
T Consensus       233 ~  233 (846)
T KOG2066|consen  233 K  233 (846)
T ss_pred             e
Confidence            7

>KOG0882|consensus

Probab=98.81  E-value=5.8e-07  Score=68.23  Aligned_cols=199  Identities=12%  Similarity=0.076  Sum_probs=135.7

Q ss_pred             CCCCcceEEEEEeC-CCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCC--cEEEEecCCCEEEEEecCCccc-c-e
Q psy11351          2 ASGDPIKVLRVIGN-DDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQD--AIFASACDDGRVLLFDTRSREE-A-T   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~-~-~   73 (224)
                      +.+-.+.++.|.+. |..++++|+++-..+...   -..+.+..+ .+|...  .+-++.-.++.+.++|-....+ . .
T Consensus        60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~  138 (558)
T KOG0882|consen   60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY  138 (558)
T ss_pred             hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence            45566778888777 999999999877655433   223332222 122211  2333445678999999875542 2 2


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC-Ccee--------------eEeecCCCceeEEEEcCCCCeEe
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK-PKEV--------------LMQYGSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~  138 (224)
                      .-.-|..+|..+.+++ .+..+.+....|.|.-|.... .+.+              ..+...+....++.|+|+|..+.
T Consensus       139 fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis  217 (558)
T KOG0882|consen  139 FKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS  217 (558)
T ss_pred             ecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence            3356889999999999 889999998999999998772 1111              11223556788999999999999


Q ss_pred             eeecCCCcEEEECCCCCcceeccc---------CCc--------------------ccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        139 GLRRRLPPVLYNTRSSSPVAQFDH---------EGY--------------------YNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       139 ~~~~d~~v~v~d~~~~~~~~~~~~---------~~~--------------------~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      +-+.|..|++++..+++.++.+..         ...                    ..+.....++|.. .+++|+-|+.
T Consensus       218 tl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~  296 (558)
T KOG0882|consen  218 TLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTI  296 (558)
T ss_pred             ccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeecc
Confidence            999999999999999877765520         000                    1112233456665 5788888876


Q ss_pred             CCeEEEEeCCCCCeE
Q psy11351        190 DFVLYMWRVPRDDIY  204 (224)
Q Consensus       190 d~~v~iw~~~~~~~~  204 (224)
                      =| |++.++.++...
T Consensus       297 ~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  297 LG-IKVINLDTNTVV  310 (558)
T ss_pred             ee-EEEEEeecCeEE
Confidence            65 789999888775

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.79  E-value=2.5e-07  Score=72.42  Aligned_cols=89  Identities=15%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             EEEeCCCCceee----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeE
Q psy11351         20 ISHDMASGDPID----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLV   95 (224)
Q Consensus        20 ~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l   95 (224)
                      .+|++..++...    .+.....+.+++++|+. ..++.|+.||+|.+||...+...  +....-..+.++|+| ++.++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~  314 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIF  314 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEE
Confidence            356665554332    22688899999999998 89999999999999998766422  223345678999999 99999


Q ss_pred             EEecCCCcEEEEecCCC
Q psy11351         96 ATANSKDGIALYDTRKP  112 (224)
Q Consensus        96 ~~~~~dg~v~i~d~~~~  112 (224)
                      ++|+..|.+.+||+.-.
T Consensus       315 ~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  315 VVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCceEEEEEeecC
Confidence            99999999999998744

>KOG2041|consensus

Probab=98.78  E-value=8.6e-08  Score=76.70  Aligned_cols=195  Identities=7%  Similarity=0.017  Sum_probs=131.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCce---------------eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDP---------------IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT   66 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~   66 (224)
                      .+....++|.|+.||.+++..+.+...               -.++ +|.+.|.-+.|+.+. +.|-+...+|.|.+|-+
T Consensus        22 WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWml  100 (1189)
T KOG2041|consen   22 WNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWML  100 (1189)
T ss_pred             EcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEEEee
Confidence            355667999999999999998865321               1122 899999999999987 89999999999999999


Q ss_pred             CCcccceee--ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         67 RSREEATEL--AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        67 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                      -.+.-...+  ....+.|.+++|+. ++..+...-.||.|.+=.+.... +.-..-.......+.|++|.+.++.+-..|
T Consensus       101 ykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ang  178 (1189)
T KOG2041|consen  101 YKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANG  178 (1189)
T ss_pred             ecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCC
Confidence            888754333  23456789999999 88999888899998876665332 111111112234689999999888888889


Q ss_pred             CcEEEECCCCCcc-----eecc-------cCCcccceeee--EEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        145 PPVLYNTRSSSPV-----AQFD-------HEGYYNSCTMK--SCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       145 ~v~v~d~~~~~~~-----~~~~-------~~~~~~~~~~~--~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .+++||-...-..     ....       .+..+..+.+.  +....|++...|+.+-.+|.+.|-.-.+
T Consensus       179 e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  179 ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             cEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            9999987542110     0000       01111111111  0111233567788888888887754433

>KOG1008|consensus

Probab=98.78  E-value=3.4e-09  Score=83.25  Aligned_cols=190  Identities=11%  Similarity=0.125  Sum_probs=126.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCCcee-eEE--eccCCeeEEEEcCCCCcEEEEec----CCCEEEEEecCCc--ccce--eec
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPI-DFY--LHERPVYGLSVDPSQDAIFASAC----DDGRVLLFDTRSR--EEAT--ELA   76 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~-~~~--~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~--~~~~--~~~   76 (224)
                      .+++.|..+|.|.+-......-- ..+  ++...+++++|++-+.+.||.|-    .|..+.|||+.++  .+..  .+.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            46889999999999988654322 222  78899999999987656777763    3567999999876  2221  222


Q ss_pred             c-CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcC-CCCeEeeeecCCCcEEEEC-CC
Q psy11351         77 V-NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNT-RS  153 (224)
Q Consensus        77 ~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~-~~  153 (224)
                      + ......+++|.. +.+++.+|...+.++++|+|..... ...-....+..+..+| .++|+++.. |+.|.+||. ++
T Consensus       151 ~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn  227 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN  227 (783)
T ss_pred             cccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence            2 334566899987 8899999999999999999954221 1112344566778888 567777655 899999993 33


Q ss_pred             C-CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-CeEEEEeCCC
Q psy11351        154 S-SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-FVLYMWRVPR  200 (224)
Q Consensus       154 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~v~iw~~~~  200 (224)
                      - .++..+.+......-....++|.|.....+++.+.| ++|+.+|+..
T Consensus       228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            2 333333222211111234577888666667776655 6889998854

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.77  E-value=2.3e-06  Score=66.92  Aligned_cols=183  Identities=8%  Similarity=-0.019  Sum_probs=114.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe----
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF----   82 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i----   82 (224)
                      +..++.++.+|.+.-+|.++|+.+........+.+--.-.+  ..++.+..++.+..+|.++|+.+..........    
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            34567778899999999999998876643333322111113  356667788999999999999877765321110    


Q ss_pred             -EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC--C--C---ceeEEEEcC--CCCeEeeeecCCCcEEEECC
Q psy11351         83 -HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS--C--E---SCMSIRFNK--AGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        83 -~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~--~---~v~~~~~~~--~~~~l~~~~~d~~v~v~d~~  152 (224)
                       .+-...   +..++.++.+|.+..+|..+++........  .  .   ....+.-+|  .+..++.++.++.++.+|+.
T Consensus       198 ~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence             111111   234666778899999999888655443210  0  0   011111222  25667777788999999999


Q ss_pred             CCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +|+.+........ ...     ..   .+..++.++.+|.+..+|..+++.
T Consensus       275 tG~~~W~~~~~~~-~~~-----~~---~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        275 SGQIVWKREYGSV-NDF-----AV---DGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             CCCEEEeecCCCc-cCc-----EE---ECCEEEEEcCCCeEEEEECCCCcE
Confidence            9987765532211 111     11   355666677899999999988865

>KOG1912|consensus

Probab=98.74  E-value=7.9e-07  Score=71.85  Aligned_cols=187  Identities=11%  Similarity=0.121  Sum_probs=131.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCC---CCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPS---QDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      ++|++...|.|.+||...+..+..+ .|..++.+++|-+.   ....|++-....++.+|+..+|+..+..........|
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence            6788888999999999988877766 67889999999753   2246666666789999999999998888776677888


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCC-------ceeeEeecCCC-------------------------ceeEEEEcC
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKP-------KEVLMQYGSCE-------------------------SCMSIRFNK  132 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~-------~~~~~~~~~~~-------------------------~v~~~~~~~  132 (224)
                      +.+.|.+.+.+..-+..|.+.+-+.-..       +.......|.+                         ....++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            9999999888888888888777654321       11111112211                         012356788


Q ss_pred             CCCeEeeeecCCCcEEEECCCCCcceecc-cCCcccceeeeEEEEeCC-CCeEEEEcCCCCeEEEEeCCC
Q psy11351        133 AGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGT-QDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       133 ~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .-+.++....-..+.++|++-...+.... ..+.+.   |  +.+-|+ ..+.|.+...||.+.+|-.+.
T Consensus       241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak---f--v~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK---F--VDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhceEEEEeccceEEEcchhhceeEEEEeccCCcc---e--eEeccCCCcceEEEEecCCeEEEEEeec
Confidence            75544444556669999998777666663 223222   2  333331 345689999999999997765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.73  E-value=1.3e-05  Score=59.15  Aligned_cols=155  Identities=12%  Similarity=0.060  Sum_probs=105.0

Q ss_pred             CCCcceEEEEEe-----CCCcEEEEeCC-CCceeeEE-eccCCeeEEEEcCCCCcEEEEe------------------cC
Q psy11351          3 SGDPIKVLRVIG-----NDDHVISHDMA-SGDPIDFY-LHERPVYGLSVDPSQDAIFASA------------------CD   57 (224)
Q Consensus         3 ~~~~~~~l~~~~-----~dg~i~iwd~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~------------------~~   57 (224)
                      ++.+|++|.+.-     ..|.|-|||.. +.+.+..+ .|.-.-..+.+.|++ ..|+.+                  ..
T Consensus        58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhc
Confidence            467788888764     35789999998 45555556 566667788899998 555554                  23


Q ss_pred             CCEEEEEecCCccccee--e--ccCCcCeEEEEEcCCCCCeEEEecCCCc-------EEEEecCCCceeeEee-------
Q psy11351         58 DGRVLLFDTRSREEATE--L--AVNSGPFHAVMFNPVEARLVATANSKDG-------IALYDTRKPKEVLMQY-------  119 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------v~i~d~~~~~~~~~~~-------  119 (224)
                      +.++...|.++++.+..  +  ..|...|..+++.+ ++..++..-..|.       |-+++..  +.+..+.       
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~  213 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWR  213 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHH
Confidence            34566677788876655  4  33677899999999 7766666544433       2333322  2222221       


Q ss_pred             cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceecc
Q psy11351        120 GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus       120 ~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~  161 (224)
                      .-...+-+|++++++..+++.+ ..+.+.+||..+++.+....
T Consensus       214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            2456889999999998776554 56789999999998887763

>KOG2114|consensus

Probab=98.70  E-value=2.8e-06  Score=69.40  Aligned_cols=190  Identities=14%  Similarity=0.181  Sum_probs=118.4

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCC-eeEEEEcCCCCcEEEEecCCC-----EEEEEecCCcc------
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERP-VYGLSVDPSQDAIFASACDDG-----RVLLFDTRSRE------   70 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~-v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~------   70 (224)
                      +..+..++.|+.+|.|.+++-.- +.+.-+ .+... |..+....+. ++|++-+.|+     .+++||++.-+      
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             cCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            34566889999999988887542 222322 45444 5555444443 6888777665     48999986432      


Q ss_pred             cc--eeecc-----CCcCeEEEEEcCCCCCeEEEecCCCcEEEEec--CCCceeeEe--ecCCCceeEEEEcCCCCeEee
Q psy11351         71 EA--TELAV-----NSGPFHAVMFNPVEARLVATANSKDGIALYDT--RKPKEVLMQ--YGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        71 ~~--~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      ++  +.+..     ...++.+++.+. +-..++.|-.+|.|..+.-  ...+.....  ...+++|+.+.+..++..++.
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            22  11222     346789999998 7899999999999998842  222122222  235679999999988887444


Q ss_pred             eecCCCcEEEECCCCCccee-cc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQ-FD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ......|.+|.+....+... .. +....++     ..+++..++++++++  ..+.+|+....++
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC-----ss~~~~t~qfIca~~--e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNC-----SSFSDGTYQFICAGS--EFLYFYDSDGRGP  247 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCcccee-----eecCCCCccEEEecC--ceEEEEcCCCcce
Confidence            44455699999984443333 33 3344443     444443334555543  4688998876555

>KOG4649|consensus

Probab=98.70  E-value=1.4e-05  Score=57.02  Aligned_cols=140  Identities=9%  Similarity=0.016  Sum_probs=96.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      ..+++.|+..+.+.--|.++|+.+....-...+.+-+.- -| ++++.|+..|.+++.+.++|...+.+...+.-=....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            467889999999999999999988665444444444443 34 6899999999999999999987777654332112233


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      ..+ ++.++..|+.|+..+..|.++..++.......+.-.+-+..|-...|+.+...|.+.--
T Consensus       101 ~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen  101 CDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV  162 (354)
T ss_pred             EcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence            455 78899999999999999999887777655433333334555533444444445544333

>KOG3621|consensus

Probab=98.67  E-value=1.1e-06  Score=70.16  Aligned_cols=188  Identities=12%  Similarity=0.118  Sum_probs=120.4

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee------
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL------   75 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------   75 (224)
                      +..+++++.|+.-|.+.+|+-..++.....  +-.+.+..+..+++. .++|.|+..|.|.++-+....+....      
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d  120 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCD  120 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence            456789999999999999999888776554  344556666778876 79999999999999988765432111      


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC----ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP----KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      +.|...|++++|++ ++..+++|...|+|.+-.+...    .....+....+.|-.+.+..  .+|++++.-. ..++++
T Consensus       121 ~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r-~~Lc~t  196 (726)
T KOG3621|consen  121 KSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR-CILCQT  196 (726)
T ss_pred             ccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh-hheeec
Confidence            34678999999999 9999999999999988877761    11223334556676666543  3444443333 445666


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCC----CCeEEEEcCCCCeEEEEeCCC
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGT----QDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +... +..++...+-.-..+. +||.|.    +...|+++--.  .++|..+-
T Consensus       197 E~et-i~QIG~k~R~~~~~~G-ACF~~g~~~~q~~~IycaRPG--~RlWead~  245 (726)
T KOG3621|consen  197 EAET-ITQIGKKPRKSLIDFG-ACFFPGQCKAQKPQIYCARPG--LRLWEADF  245 (726)
T ss_pred             chhH-HHHhcCCCcCCccccc-eEEeeccccCCCceEEEecCC--CceEEeec
Confidence            5433 3333222221211222 455552    23345554332  56776654

>KOG2314|consensus

Probab=98.65  E-value=6.4e-06  Score=64.33  Aligned_cols=152  Identities=11%  Similarity=0.093  Sum_probs=105.8

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec-----------CCCEEEEEecCCcccc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC-----------DDGRVLLFDTRSREEA   72 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----------~d~~i~iwd~~~~~~~   72 (224)
                      ++.|.||+|--.-| |.+|--++-..+..+.|.+ |.-+.|||.. ++|++-+           ....++|||+++|...
T Consensus       219 SP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk  295 (698)
T KOG2314|consen  219 SPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK  295 (698)
T ss_pred             cCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccchh
Confidence            56788998887665 8999888777777777864 7889999997 8999854           2368999999999887


Q ss_pred             eeeccCC--cC-eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-----CC
Q psy11351         73 TELAVNS--GP-FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-----RL  144 (224)
Q Consensus        73 ~~~~~~~--~~-i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~  144 (224)
                      +.+....  .. -.-+.|+- ++.++|.-.. ..|.||+..+...+....-.-..|....|+|.++.|+-=..     -.
T Consensus       296 rsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~pa  373 (698)
T KOG2314|consen  296 RSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPA  373 (698)
T ss_pred             cceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcc
Confidence            7775422  22 23457888 8888887655 57999998764322222224467888999999888765321     12


Q ss_pred             CcEEEECCCCCcceec
Q psy11351        145 PPVLYNTRSSSPVAQF  160 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~  160 (224)
                      .+.+-.+.+++.+.+.
T Consensus       374 rvtL~evPs~~~iRt~  389 (698)
T KOG2314|consen  374 RVTLMEVPSKREIRTK  389 (698)
T ss_pred             eEEEEecCccceeeec
Confidence            3556666666555443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.63  E-value=1.1e-05  Score=63.08  Aligned_cols=185  Identities=13%  Similarity=0.049  Sum_probs=113.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEE--EcC--CCCcEEEEecCCCEEEEEecCCcccceeeccCCc---
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLS--VDP--SQDAIFASACDDGRVLLFDTRSREEATELAVNSG---   80 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---   80 (224)
                      ..++.+..++.+.-+|.++|+.+..+....+...+.  -+|  .+ ..++.++.++.+..+|..+++.+........   
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~  239 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA  239 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence            356667789999999999999887663322111000  111  12 3566677889999999999987665431110   


Q ss_pred             ----CeEEEEEcCC-CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         81 ----PFHAVMFNPV-EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        81 ----~i~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                          ....+.-+|. .+..++.++.+|.+..+|..+++......-  .....+.  ..+..++.++.++.+..+|..+++
T Consensus       240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCc
Confidence                0011111110 134566666889999999999876544321  1111122  246778888889999999999998


Q ss_pred             cceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+.... .......   .++ .   .+.+++.++.||.++..|..+|+..
T Consensus       316 ~~W~~~~~~~~~~~---sp~-v---~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        316 ELWSQSDLLHRLLT---APV-L---YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EEEcccccCCCccc---CCE-E---ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            765542 1111111   111 1   2456777889999999999999874

>KOG1832|consensus

Probab=98.62  E-value=7.3e-08  Score=78.83  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=113.9

Q ss_pred             eEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEe-cCCC-cEEEE
Q psy11351         31 DFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATA-NSKD-GIALY  107 (224)
Q Consensus        31 ~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg-~v~i~  107 (224)
                      +.+ .|+...+|++|+-.. +.|+.|+..|.|+++++.+|........|...|+-+.-+. ++..+++. +... -..+|
T Consensus      1095 ~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             hhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHh
Confidence            344 688899999999887 8999999999999999999999999999999999999888 55555444 3333 46789


Q ss_pred             ecCCC-ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE
Q psy11351        108 DTRKP-KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       108 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  186 (224)
                      ++..- ...+.+    ..-.++.|+.....-+.|+......+||+.++.++.++-...--+...-..+.|+| ...+++ 
T Consensus      1173 ~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL- 1246 (1516)
T ss_pred             ccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe-
Confidence            98742 222222    23467889877666667776677999999999988875111111111113366777 455555 


Q ss_pred             cCCCCeEEEEeCCCCCe
Q psy11351        187 GSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       187 ~~~d~~v~iw~~~~~~~  203 (224)
                        .||.  +||++..+.
T Consensus      1247 --ndGv--LWDvR~~~a 1259 (1516)
T KOG1832|consen 1247 --NDGV--LWDVRIPEA 1259 (1516)
T ss_pred             --eCce--eeeeccHHH
Confidence              3564  799887643

>KOG1920|consensus

Probab=98.59  E-value=2.2e-05  Score=66.70  Aligned_cols=189  Identities=10%  Similarity=0.117  Sum_probs=118.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEec----CCcccc-----------
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDT----RSREEA-----------   72 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~----~~~~~~-----------   72 (224)
                      +.++.+..+|.|.+-|.++......-.-...|.+++|+|++ +.++..+.++++.+-+.    -..+++           
T Consensus        81 ~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v  159 (1265)
T KOG1920|consen   81 NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFV  159 (1265)
T ss_pred             ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccc
Confidence            34566677889999988876554433567899999999998 78888877778766432    111111           


Q ss_pred             --------eeeccC---------------------CcCeEEEEEcCCCCCeEEEe-----cCCCcEEEEecCCCceeeEe
Q psy11351         73 --------TELAVN---------------------SGPFHAVMFNPVEARLVATA-----NSKDGIALYDTRKPKEVLMQ  118 (224)
Q Consensus        73 --------~~~~~~---------------------~~~i~~~~~~~~~~~~l~~~-----~~dg~v~i~d~~~~~~~~~~  118 (224)
                              ..+.+.                     .+.=..+.|.. ++.++++.     ...+.+++||.. +. +...
T Consensus       160 ~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~  236 (1265)
T KOG1920|consen  160 NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GA-LNST  236 (1265)
T ss_pred             eecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-ch-hhcc
Confidence                    011110                     01124588988 88899883     333789999977 32 2222


Q ss_pred             e-cCCCceeEEEEcCCCCeEeee---ecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE---cCCCC
Q psy11351        119 Y-GSCESCMSIRFNKAGTQLLGL---RRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS---GSDDF  191 (224)
Q Consensus       119 ~-~~~~~v~~~~~~~~~~~l~~~---~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s---~~~d~  191 (224)
                      . ...+.-.+++|-|.|..+++-   ..|+.|.+|... |..-..|..+-+.....+..++|+. ++..|++   .....
T Consensus       237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~  314 (1265)
T KOG1920|consen  237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENS  314 (1265)
T ss_pred             cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC-CCCceeeeecccccc
Confidence            2 233445779999999988874   345578888754 4333333211121222244467766 6888777   55566


Q ss_pred             eEEEEeCCCCC
Q psy11351        192 VLYMWRVPRDD  202 (224)
Q Consensus       192 ~v~iw~~~~~~  202 (224)
                      .|++|-+.+-.
T Consensus       315 ~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  315 LVQLWTTGNYH  325 (1265)
T ss_pred             eEEEEEecCeE
Confidence            79999887753

>KOG2314|consensus

Probab=98.57  E-value=1.2e-05  Score=62.83  Aligned_cols=189  Identities=14%  Similarity=0.151  Sum_probs=112.4

Q ss_pred             CCCCcceEEEEEeC-----------CCcEEEEeCCCCceeeEEe---ccCCee-EEEEcCCCCcEEEEecCCCEEEEEec
Q psy11351          2 ASGDPIKVLRVIGN-----------DDHVISHDMASGDPIDFYL---HERPVY-GLSVDPSQDAIFASACDDGRVLLFDT   66 (224)
Q Consensus         2 a~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~---~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~   66 (224)
                      .+++..+||+|-+.           ...++|||+.+|...+.+.   ....+. -..||.++ +++|--.. ..|.||+.
T Consensus       256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEt  333 (698)
T KOG2314|consen  256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYET  333 (698)
T ss_pred             ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEec
Confidence            34566678887652           2578999999999888772   222222 35799998 78887766 58889987


Q ss_pred             CCcccceeeccCCcCeEEEEEcCCCCCeEEEecC-----CCcEEE-----------------------------------
Q psy11351         67 RSREEATELAVNSGPFHAVMFNPVEARLVATANS-----KDGIAL-----------------------------------  106 (224)
Q Consensus        67 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~i-----------------------------------  106 (224)
                      .+-.++..-.-....|....|+| .+++||-=+.     -..+.+                                   
T Consensus       334 psf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  334 PSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             CceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence            65433222222234566667777 5555543211     011222                                   


Q ss_pred             -----------------EecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec---CCCcEEEECCC-C---Ccceeccc
Q psy11351        107 -----------------YDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR---RLPPVLYNTRS-S---SPVAQFDH  162 (224)
Q Consensus       107 -----------------~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~d~~~-~---~~~~~~~~  162 (224)
                                       +.++....+.....-+..|...+|-|.|+.+++-+.   ..++.+|.+++ .   +++..+. 
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-  491 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-  491 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-
Confidence                             222222222222234566788899999987776442   45688898874 2   2222221 


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEc---CCCCeEEEEeCCC
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSG---SDDFVLYMWRVPR  200 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~v~iw~~~~  200 (224)
                           ...+..+.|+| .|++++.+   |..|.+.++|+.-
T Consensus       492 -----k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  492 -----KKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             -----ccccceEEEcC-CCcEEEEEEecccccceEEEecch
Confidence                 12234477888 68887665   4578999999884

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.57  E-value=0.00012  Score=54.27  Aligned_cols=191  Identities=12%  Similarity=0.155  Sum_probs=119.2

Q ss_pred             cceEEEEEeCCCc-EEEEeCCCCceeeEE-eccCC-e-eEEEEcCCCCcEEEEe-----cCCCEEEEEecC-Ccccceee
Q psy11351          6 PIKVLRVIGNDDH-VISHDMASGDPIDFY-LHERP-V-YGLSVDPSQDAIFASA-----CDDGRVLLFDTR-SREEATEL   75 (224)
Q Consensus         6 ~~~~l~~~~~dg~-i~iwd~~~~~~~~~~-~~~~~-v-~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~-~~~~~~~~   75 (224)
                      ....++.+-.-|+ ..+||..+++....+ ...+. . =--.|+++| ++|++.     ...|.|-|||.. +-+.+..+
T Consensus        16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~   94 (305)
T PF07433_consen   16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYRRIGEF   94 (305)
T ss_pred             CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcEEEeEe
Confidence            3466777777775 689999998877655 11111 1 125799999 677765     345899999998 55667777


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecC-------CC-----------cEEEEecCCCceeeEee----cCCCceeEEEEcCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANS-------KD-----------GIALYDTRKPKEVLMQY----GSCESCMSIRFNKA  133 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~-------dg-----------~v~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~  133 (224)
                      ..|.-.-..+.+.| ++..|+.+..       .|           ++...|.++++.+.+..    .|.-++.-+++.++
T Consensus        95 ~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~  173 (305)
T PF07433_consen   95 PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD  173 (305)
T ss_pred             cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC
Confidence            77666667888999 7766666521       12           23445566665444422    26678999999999


Q ss_pred             CCeEeeeecCCC-----cEEEECCCCCcceecc--------cCCcccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCC
Q psy11351        134 GTQLLGLRRRLP-----PVLYNTRSSSPVAQFD--------HEGYYNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVP  199 (224)
Q Consensus       134 ~~~l~~~~~d~~-----v~v~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~  199 (224)
                      |..++..-..+.     --+.-.+.++.+..+.        ..+.+     -++++++ ++.++ +|+-..+.+.+||..
T Consensus       174 G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~-----gSIa~~~-~g~~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  174 GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI-----GSIAADR-DGRLIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce-----EEEEEeC-CCCEEEEECCCCCEEEEEECC
Confidence            887766543332     1122223333333331        12233     3466666 56554 666678899999999


Q ss_pred             CCCeE
Q psy11351        200 RDDIY  204 (224)
Q Consensus       200 ~~~~~  204 (224)
                      +++..
T Consensus       248 tg~~~  252 (305)
T PF07433_consen  248 TGRLL  252 (305)
T ss_pred             CCCEe
Confidence            99874

>KOG1645|consensus

Probab=98.54  E-value=2.4e-05  Score=58.95  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=59.4

Q ss_pred             CCCCCcce-EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc
Q psy11351          1 MASGDPIK-VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         1 ~a~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      ||.++..+ ++..++.+.+|+|.|+++...+..+.-...+++++|.-+..+++..|-..|.|.+||++..+
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             hccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            34555555 78899999999999999998888884448999999998888899999999999999998654

>KOG3621|consensus

Probab=98.47  E-value=2e-06  Score=68.75  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=90.7

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      +...+.--++...+ .+++.|+.-|.+++|+...++... ...+..+.+..+..++ ...++|.|+..|.|.++.+....
T Consensus        32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence            44555555566666 799999999999999977666332 2223455677778888 88999999999999999988754


Q ss_pred             eeeEee------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351        114 EVLMQY------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus       114 ~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      +.....      .|+..|++++|++++..+++|...|+|.+-.+.+
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            432222      2788999999999999999999999999888876

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.45  E-value=2.2e-05  Score=63.24  Aligned_cols=182  Identities=9%  Similarity=0.034  Sum_probs=110.8

Q ss_pred             CcceEEE-EEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC----CEEEEEecCCcccceeeccCC
Q psy11351          5 DPIKVLR-VIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD----GRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         5 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ++|+.+. +.-..+.+.+.|.++.+......-.+....++++|++ +++++.+.+    .++..-+..+......+... 
T Consensus       202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-  279 (635)
T PRK02888        202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-  279 (635)
T ss_pred             CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence            3454443 3334566788888887777766555566788999998 676666532    22322222221111111100 


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCC----CceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRK----PKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSS  154 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~  154 (224)
                       .+.  ++.+ ++++...  .++.|.+.|.++    +........-......+.++|||+++++++ .++++.|+|+.+.
T Consensus       280 -~ie--a~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        280 -RIE--EAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             -HHH--Hhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence             000  2233 4555444  356899999998    334444445566778999999999988765 5889999999875


Q ss_pred             Ccc------------eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        155 SPV------------AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       155 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +..            .+...     ...-....|.+ ++..+.|-..|..|..|++..
T Consensus       354 k~~~~~~~~~~~~vvaevev-----GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        354 DDLFDGKIKPRDAVVAEPEL-----GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhccCCccceEEEeecc-----CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence            531            11111     11111256666 578888888999999999886

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.43  E-value=0.00011  Score=59.14  Aligned_cols=178  Identities=8%  Similarity=0.032  Sum_probs=108.0

Q ss_pred             CCCcEEEEeCCCCceeeEEecc-C--------------------Ce-eEEEEcCCCCcEEEEecCCC-------------
Q psy11351         15 NDDHVISHDMASGDPIDFYLHE-R--------------------PV-YGLSVDPSQDAIFASACDDG-------------   59 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~-~--------------------~v-~~~~~~~~~~~~l~s~~~d~-------------   59 (224)
                      .+|.+.-+|.++++.+..+... .                    .+ ....+.+.+ .+++.++.++             
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~  251 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGD  251 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCC
Confidence            3678999999999887766221 1                    01 123344444 4666676554             


Q ss_pred             -----EEEEEecCCcccceeeccCCcCeE------EEEEc---CCCC---CeEEEecCCCcEEEEecCCCceeeEeecCC
Q psy11351         60 -----RVLLFDTRSREEATELAVNSGPFH------AVMFN---PVEA---RLVATANSKDGIALYDTRKPKEVLMQYGSC  122 (224)
Q Consensus        60 -----~i~iwd~~~~~~~~~~~~~~~~i~------~~~~~---~~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  122 (224)
                           .+.-+|.++++....++.-.....      ...+.   ..++   ..++.++.+|.+...|.++++.+...... 
T Consensus       252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-  330 (488)
T cd00216         252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-  330 (488)
T ss_pred             CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-
Confidence                 799999999998877642111110      00111   0122   26778889999999999999876654321 


Q ss_pred             CceeEEEEcCCCCeEeee------------------ecCCCcEEEECCCCCcceecccC---------CcccceeeeEEE
Q psy11351        123 ESCMSIRFNKAGTQLLGL------------------RRRLPPVLYNTRSSSPVAQFDHE---------GYYNSCTMKSCC  175 (224)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~------------------~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~  175 (224)
                        ...++.+|  ..++.+                  ..++.+.-.|+.+|+.+.+....         .....   .++.
T Consensus       331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~---~~~~  403 (488)
T cd00216         331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG---GSLA  403 (488)
T ss_pred             --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC---cceE
Confidence              11123333  222221                  23567888899999887776322         11111   1111


Q ss_pred             EeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        176 FAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       176 ~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .   .+..++.++.||.|+.+|..+|++.
T Consensus       404 ~---~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         404 T---AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             e---cCCeEEEECCCCeEEEEECCCCcee
Confidence            1   4678888889999999999999874

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.43  E-value=0.00012  Score=53.13  Aligned_cols=167  Identities=10%  Similarity=0.199  Sum_probs=102.5

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC-CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-SGPFHAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      +-...+..++|+|+...++++....+.|..++. +|+.++.+.-. .+-...|++.. ++.++++.-.++.+.++++...
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence            345569999999987578889999999988886 47766666432 24577888877 6777777667899999988432


Q ss_pred             c----e--eeEee-----cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC---CCcceec---ccC-CcccceeeeEE
Q psy11351        113 K----E--VLMQY-----GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS---SSPVAQF---DHE-GYYNSCTMKSC  174 (224)
Q Consensus       113 ~----~--~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~---~~~~~~~---~~~-~~~~~~~~~~~  174 (224)
                      .    .  ...+.     .+...+..++|+|.++.|+++-......+|.+..   ...+...   .+. ....-..++.+
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence            1    1  11111     2445689999999988888887777777787654   2222211   111 11122236678


Q ss_pred             EEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        175 CFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       175 ~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+.|..+.+++-......|..+| .+|+.
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~  204 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELD-RQGRV  204 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE--TT--E
T ss_pred             EEcCCCCeEEEEECCCCeEEEEC-CCCCE
Confidence            89998888988888999999999 55554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.41  E-value=4.6e-05  Score=63.51  Aligned_cols=184  Identities=17%  Similarity=0.259  Sum_probs=114.6

Q ss_pred             EEeCCCcEEEEeCCCCceeeEEe-c-cCCeeEEEEcCCC------CcEEEEecCCCEEEEEecCCcc--ccee-e--ccC
Q psy11351         12 VIGNDDHVISHDMASGDPIDFYL-H-ERPVYGLSVDPSQ------DAIFASACDDGRVLLFDTRSRE--EATE-L--AVN   78 (224)
Q Consensus        12 ~~~~dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~--~~~~-~--~~~   78 (224)
                      .......|+-.|++.|+.+..+. + ..+|..+  .|+.      +.-.+.|-.+..++.||.|-..  .+.. .  ...
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            33456789999999999998883 2 2335444  3421      1234556667899999998643  2210 1  112


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC--CC--
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR--SS--  154 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~--~~--  154 (224)
                      .....|++-..  ..++|.|+.+|.|++||--..+....+.+-..+|..|..+.||+++++.+. ..+.++++.  .+  
T Consensus       577 ~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~~~~g~~  653 (794)
T PF08553_consen  577 KNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTLIKDGKN  653 (794)
T ss_pred             CCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEeeecCCc
Confidence            33567776654  568999999999999994332223334466899999999999999887764 457777752  11  


Q ss_pred             --------------Ccc-ee--c--ccCCc-----ccceeeeEEEEeCC---CCeEEEEcCCCCeEEEEeCCCC
Q psy11351        155 --------------SPV-AQ--F--DHEGY-----YNSCTMKSCCFAGT---QDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       155 --------------~~~-~~--~--~~~~~-----~~~~~~~~~~~~~~---~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                                    ++. ..  +  .|...     ...+.|.+..|+-.   ....|+| +....+.+|+++.-
T Consensus       654 ~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivt-stG~f~v~Wnf~kV  726 (794)
T PF08553_consen  654 SGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVT-STGPFVVTWNFKKV  726 (794)
T ss_pred             cCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEE-eccCEEEEEEHHHH
Confidence                          111 01  1  11111     24466888888641   2344555 45678999998753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.41  E-value=2.7e-05  Score=61.09  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=90.6

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEE--ecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLF--DTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      ..+.++++++++........+.-..-+|+|+|.+++++...||...||  |+..++ ...+....+.-..=.|+|++..+
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~i  296 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKI  296 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEE
Confidence            458899999887766665556666789999997788888888876555  666555 33344334434466899944455


Q ss_pred             EEEecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-CC--cEEEECCCCCcceec
Q psy11351         95 VATANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-LP--PVLYNTRSSSPVAQF  160 (224)
Q Consensus        95 l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--v~v~d~~~~~~~~~~  160 (224)
                      +++.+..|.  |.++|...... ..+......-..-.|+|||++++..+.. |.  |.+.|+.++.....+
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence            556666666  55556554433 3333333333367899999999887643 43  666666665543333

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.0006  Score=53.21  Aligned_cols=195  Identities=14%  Similarity=0.149  Sum_probs=130.8

Q ss_pred             CCCCcce-EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec--CCCEEEEEecCCcccceeeccC
Q psy11351          2 ASGDPIK-VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC--DDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         2 a~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +++..+. .++....+..|.+.|..+.+......-......++++|+++...++-.  .++++.+.|..+++.......-
T Consensus        80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG  159 (381)
T COG3391          80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG  159 (381)
T ss_pred             eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence            3444555 555666678999999888887777754457889999999954445544  3789999999888877776544


Q ss_pred             CcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCCCceeeE----eecCCCceeEEEEcCCCCeEeeeecC---CCcEEEE
Q psy11351         79 SGPFHAVMFNPVEAR-LVATANSKDGIALYDTRKPKEVLM----QYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLYN  150 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~d  150 (224)
                      ..+ ..++++| ++. .+++-..++.+.+.|.........    ...-......+.++|+|+++.+....   +.+...|
T Consensus       160 ~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id  237 (381)
T COG3391         160 NTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID  237 (381)
T ss_pred             CCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence            445 8899999 666 555555789999999776543321    11223344678999999977765543   4788888


Q ss_pred             CCCCCcceec-ccCC-cccceeeeEEEEeCCCCeEEEEc-CCCCeEEEEeCCCCCeE
Q psy11351        151 TRSSSPVAQF-DHEG-YYNSCTMKSCCFAGTQDEYVVSG-SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       151 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~iw~~~~~~~~  204 (224)
                      ..++...... .... ....     ....| ++..+... ...+.+.+.|..+....
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~-----v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         238 TATGNVTATDLPVGSGAPRG-----VAVDP-AGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             CCCceEEEeccccccCCCCc-----eeECC-CCCEEEEEecCCCeEEEEeCCCCcee
Confidence            8877665542 1111 1122     44555 56665555 44588889888876653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.35  E-value=0.00023  Score=57.35  Aligned_cols=190  Identities=13%  Similarity=0.121  Sum_probs=115.7

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCC-------e--eEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERP-------V--YGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      ..+..++.++.+.-.|.++++.+..+.....       +  ..+... ++ ..++.++.++.|.-+|.++++.+..+...
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            4566777889999999999988766522111       0  011111 21 46777888999999999999988776543


Q ss_pred             CcC-----e-EEEEEcCCCCCeEEEec---------CCCcEEEEecCCCceeeEeecCCC--------------------
Q psy11351         79 SGP-----F-HAVMFNPVEARLVATAN---------SKDGIALYDTRKPKEVLMQYGSCE--------------------  123 (224)
Q Consensus        79 ~~~-----i-~~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~--------------------  123 (224)
                      ...     + ....+.  + .+++.++         .++.+.-+|..+++..........                    
T Consensus       140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            220     1 111222  2 3444443         367889999999877665542110                    


Q ss_pred             ce-eEEEEcCCCCeEeeeecCC------------------CcEEEECCCCCcceecccCCc-c------cceeeeEEEEe
Q psy11351        124 SC-MSIRFNKAGTQLLGLRRRL------------------PPVLYNTRSSSPVAQFDHEGY-Y------NSCTMKSCCFA  177 (224)
Q Consensus       124 ~v-~~~~~~~~~~~l~~~~~d~------------------~v~v~d~~~~~~~~~~~~~~~-~------~~~~~~~~~~~  177 (224)
                      .+ ...++.+.+..++.++.++                  .+.-+|..+|+....+....+ .      ....+..+.  
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~--  294 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK--  294 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc--
Confidence            01 1244555566777776554                  688899999998887632111 0      001111100  


Q ss_pred             CCCC---eEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        178 GTQD---EYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       178 ~~~~---~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..++   ..++.++.+|.+...|..+|+..
T Consensus       295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~  324 (488)
T cd00216         295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLI  324 (488)
T ss_pred             ccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence            0123   36788889999999999999874

The alignment model contains an 8-bladed beta-propeller.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.34  E-value=2.8e-05  Score=66.76  Aligned_cols=149  Identities=9%  Similarity=0.038  Sum_probs=97.6

Q ss_pred             CeeEEEEcCCCCcEEEEecC------CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecC---CCcEEEEe
Q psy11351         38 PVYGLSVDPSQDAIFASACD------DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANS---KDGIALYD  108 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~i~d  108 (224)
                      .-..++|-.|| .+||+.+.      -+.+++|+-+ |....+.+.-.+--.+++|.| .++++|+...   ...|.+|.
T Consensus       211 ~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  211 GRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEe
Confidence            45678899999 78887654      2689999965 654444333334446889999 8899998864   33466666


Q ss_pred             cCCCceeeEee----cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec----ccCCcccceeeeEEEEeCCC
Q psy11351        109 TRKPKEVLMQY----GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF----DHEGYYNSCTMKSCCFAGTQ  180 (224)
Q Consensus       109 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  180 (224)
                      -+ |..-..+.    .....|..+.|++++..|+....|. |.+|-..+..-..+.    .....+.     .+.|+|.+
T Consensus       288 rN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~-----~~~Wdpe~  360 (928)
T PF04762_consen  288 RN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN-----FVKWDPEK  360 (928)
T ss_pred             cC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC-----ceEECCCC
Confidence            33 32222222    3456899999999999999977665 999998876543332    1112211     27788876


Q ss_pred             CeEEEEcCCCCeEEEE
Q psy11351        181 DEYVVSGSDDFVLYMW  196 (224)
Q Consensus       181 ~~~l~s~~~d~~v~iw  196 (224)
                      ...|...+.+|.+..+
T Consensus       361 p~~L~v~t~~g~~~~~  376 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIY  376 (928)
T ss_pred             CCEEEEEecCCcEEEE
Confidence            6667666665655443

>KOG4640|consensus

Probab=98.33  E-value=4.4e-06  Score=66.10  Aligned_cols=91  Identities=14%  Similarity=0.085  Sum_probs=74.8

Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCcee-EEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCM-SIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ...+..+.|+| .-.++|++..+|.+.+..+. .+.+..+.-+...++ +++|.|||+.|++|-.||+|++.|++++..+
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            45688999999 89999999999999999988 667777775667777 9999999999999999999999999998877


Q ss_pred             eec--ccCCcccceee
Q psy11351        158 AQF--DHEGYYNSCTM  171 (224)
Q Consensus       158 ~~~--~~~~~~~~~~~  171 (224)
                      ..+  .....+..+.|
T Consensus        98 ~~~~~s~e~~is~~~w  113 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIW  113 (665)
T ss_pred             eccccccccchheeec
Confidence            763  33444444444

>KOG3617|consensus

Probab=98.30  E-value=1.1e-05  Score=66.24  Aligned_cols=99  Identities=14%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             EEEEEe----CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          9 VLRVIG----NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         9 ~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +++.++    ..|.|.|| .++|++.+-....-.+++++|+|.. -.|+.|-.-|.+.+|...+.+.-.....|..+|..
T Consensus        29 lfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~  106 (1416)
T KOG3617|consen   29 LFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQG  106 (1416)
T ss_pred             eeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCcee
Confidence            455554    45778877 4566666554444557789999987 78999999999999998877755555789999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecC
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTR  110 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~  110 (224)
                      +.|++ ++..++++..-|.|.+|...
T Consensus       107 l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  107 LDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEecC-CCCeEEEcCCCceeEEEEee
Confidence            99999 99999999999999999776

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.29  E-value=0.00035  Score=53.19  Aligned_cols=175  Identities=15%  Similarity=0.156  Sum_probs=104.5

Q ss_pred             CcEEEEeCCCCceeeEE--eccCCeeEEE---EcCC---CCcEEEEecC----------CCEEEEEecCCc----cccee
Q psy11351         17 DHVISHDMASGDPIDFY--LHERPVYGLS---VDPS---QDAIFASACD----------DGRVLLFDTRSR----EEATE   74 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~--~~~~~v~~~~---~~~~---~~~~l~s~~~----------d~~i~iwd~~~~----~~~~~   74 (224)
                      ..|++.|..+.+.+..+  .....+++++   +..+   ...+++.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36899999988877665  3344455554   3332   1367776632          299999999884    12222


Q ss_pred             e--ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         75 L--AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        75 ~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      +  ....++|++++--.  +. ++.+ .++.|.+|++...+.+.....  ....+.++..  .++++++|.....+.++.
T Consensus        82 i~~~~~~g~V~ai~~~~--~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN--GR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEET--TE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhhC--CE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence            2  24467899988654  34 4443 347899999987762333222  3334555544  467999999888888886


Q ss_pred             CCC-CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        151 TRS-SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       151 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .+. +..+..+....  .......+.+-+ +++.++.+..+|.+.++..+.
T Consensus       156 ~~~~~~~l~~va~d~--~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  156 YDEENNKLILVARDY--QPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EETTTE-EEEEEEES--S-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEccCCEEEEEEecC--CCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence            543 23233332111  112233456664 346899999999999998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.28  E-value=0.00014  Score=55.32  Aligned_cols=139  Identities=6%  Similarity=0.022  Sum_probs=90.6

Q ss_pred             ceEEEEEeC----------CCcEEEEeCCCC-----ceee--EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          7 IKVLRVIGN----------DDHVISHDMASG-----DPID--FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         7 ~~~l~~~~~----------dg~i~iwd~~~~-----~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      -.+++.|..          .|.|.++++...     +...  .....++|++++-. .+ . |+.+. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCc
Confidence            467777753          288999999884     2222  22678999999876 33 4 44443 479999999877


Q ss_pred             ccceeec--cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEee--cCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         70 EEATELA--VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQY--GSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        70 ~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                      +.+....  .....+.++...   +++++.|.....+.++..+.... +..+.  .....++++.|-++++.++.+..+|
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~g  194 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDG  194 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTS
T ss_pred             ccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCC
Confidence            7222221  122356666654   45899998888888886554222 33222  2456688999987767999999999


Q ss_pred             CcEEEECC
Q psy11351        145 PPVLYNTR  152 (224)
Q Consensus       145 ~v~v~d~~  152 (224)
                      .+.++...
T Consensus       195 nl~~l~~~  202 (321)
T PF03178_consen  195 NLFVLRYN  202 (321)
T ss_dssp             EEEEEEE-
T ss_pred             eEEEEEEC
Confidence            99999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.28  E-value=0.00038  Score=54.21  Aligned_cols=189  Identities=14%  Similarity=0.102  Sum_probs=114.7

Q ss_pred             CCCcceEEEEEeCCC---------------cEEEEeCCCCceeeEE-eccCC--ee-EEEEcCCCCcEEEEecCCCEEEE
Q psy11351          3 SGDPIKVLRVIGNDD---------------HVISHDMASGDPIDFY-LHERP--VY-GLSVDPSQDAIFASACDDGRVLL   63 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~-~~~~~--v~-~~~~~~~~~~~l~s~~~d~~i~i   63 (224)
                      ++.++++|.+-+..+               .+.+||..++..+..+ ....+  .. -+.|+.++ +++|-. ....++|
T Consensus        79 fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i  156 (561)
T COG5354          79 FSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYI  156 (561)
T ss_pred             cCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEE
Confidence            345566666655433               4999999999988777 33333  44 67788876 666655 3458999


Q ss_pred             EecCCcc----cceeeccCCcCeEEEEEcCC-CCCeEEE-----ecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC
Q psy11351         64 FDTRSRE----EATELAVNSGPFHAVMFNPV-EARLVAT-----ANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA  133 (224)
Q Consensus        64 wd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  133 (224)
                      +++ ++.    +...++  ...|....|+|. +...|+.     .+..+.+++|.+.....+....--+..-..+.|.+.
T Consensus       157 ~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~  233 (561)
T COG5354         157 HEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL  233 (561)
T ss_pred             Eec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence            997 333    122222  356888899993 2223332     356778999998865544332222233356889999


Q ss_pred             CCeEeeee-----------cCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeE-EEEcCCCCeEEEEeCCCC
Q psy11351        134 GTQLLGLR-----------RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEY-VVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       134 ~~~l~~~~-----------~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~v~iw~~~~~  201 (224)
                      |++|++--           ....+++++++.....-.....+.|..     .+|.|...++ +++|-.+-.+.++|++..
T Consensus       234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhd-----f~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHD-----FTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             CceEEEEEEEeeecccceeccceEEEEeecccccceecccccccee-----eeecccCCceeEEecccccceeecccccc
Confidence            99876521           124578888763322222234556554     6666643333 455567888888888765

>KOG4649|consensus

Probab=98.28  E-value=0.00016  Score=51.73  Aligned_cols=118  Identities=9%  Similarity=0.003  Sum_probs=85.9

Q ss_pred             EcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC
Q psy11351         44 VDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE  123 (224)
Q Consensus        44 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  123 (224)
                      ..++...+++.|+..+.+.--|..+|+....-.- ..+|.+-+.--  +++++.|...|.+++.+..++.....+...+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            3445557899999999999999999987654321 22333333322  46799999999999999999977666654332


Q ss_pred             ceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCC
Q psy11351        124 SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEG  164 (224)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~  164 (224)
                      --......+++..+..++.|++.+..|.++...+...+-.+
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence            22334567889999999999999999999988877764333

>KOG1008|consensus

Probab=98.24  E-value=9.7e-07  Score=69.91  Aligned_cols=134  Identities=16%  Similarity=0.173  Sum_probs=89.2

Q ss_pred             CCCcEEEEeCCCC--ceeeE---E-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCcCeEEEEE
Q psy11351         15 NDDHVISHDMASG--DPIDF---Y-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSGPFHAVMF   87 (224)
Q Consensus        15 ~dg~i~iwd~~~~--~~~~~---~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~   87 (224)
                      .|..+.|||+.++  .+...   . +-.....+++|..+. +++.+|...+.++++|++... ....+  ....+..+.+
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tV  203 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITV  203 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh--hhhhccccee
Confidence            4667999999877  33221   1 234556688999776 799999999999999998432 12222  1234556777


Q ss_pred             cCCCCCeEEEecCCCcEEEEe-cCCCceeeEeecC-----CCceeEEEEcCCCC-eEee-eecCCCcEEEECC
Q psy11351         88 NPVEARLVATANSKDGIALYD-TRKPKEVLMQYGS-----CESCMSIRFNKAGT-QLLG-LRRRLPPVLYNTR  152 (224)
Q Consensus        88 ~~~~~~~l~~~~~dg~v~i~d-~~~~~~~~~~~~~-----~~~v~~~~~~~~~~-~l~~-~~~d~~v~v~d~~  152 (224)
                      .|..+.++++-. ||.+.+|| .++-+.+.....+     ...+..++|+|... .+++ ....++|+++|+.
T Consensus       204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            786677887764 99999999 5544443333222     23489999999743 3333 3455789999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00018  Score=56.50  Aligned_cols=176  Identities=14%  Similarity=0.098  Sum_probs=100.4

Q ss_pred             cEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEe--cCC-CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCC
Q psy11351         18 HVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASA--CDD-GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR   93 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~--~~d-~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~   93 (224)
                      .+.+-|.+ +.....+ .-...+..-+|+|++..+....  ... ..+.++|+++++...... ..+.-..-+|+|++.+
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            34444444 3333333 3445677788999984332221  222 569999999887554443 2334456789995555


Q ss_pred             eEEEecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCC--cEEEECCCCCcceecccCCcccc
Q psy11351         94 LVATANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLP--PVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        94 ~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      ++++...||.  |.++|+...+ ...+....+.-..-.|+|||++++-.+. .|.  |.+++++.+.. ..+.....-..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            6666667776  5666777665 3334433344446789999998877653 344  56666665544 33321211111


Q ss_pred             eeeeEEEEeCCCCeEEEEcCC-CCe--EEEEeCCCCC
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSD-DFV--LYMWRVPRDD  202 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~-d~~--v~iw~~~~~~  202 (224)
                          .-.|+| ++++++..+. +|.  |.+.|+.++.
T Consensus       330 ----~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         330 ----NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ----CccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence                145666 6777665543 344  6666666554

>KOG2114|consensus

Probab=98.19  E-value=0.00094  Score=55.34  Aligned_cols=151  Identities=13%  Similarity=0.227  Sum_probs=102.4

Q ss_pred             ceEEEEEeCCCc-----EEEEeCCCC------cee---eEEe-----ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC
Q psy11351          7 IKVLRVIGNDDH-----VISHDMASG------DPI---DFYL-----HERPVYGLSVDPSQDAIFASACDDGRVLLFDTR   67 (224)
Q Consensus         7 ~~~l~~~~~dg~-----i~iwd~~~~------~~~---~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~   67 (224)
                      .++|++-+.|+.     ++||+++.-      +++   +.+.     .+.++.+++.+.+- +.++.|-.+|.|..+.-.
T Consensus        77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             ceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCc
Confidence            357787777765     899998743      222   2233     35678899999886 899999999999988532


Q ss_pred             ----CcccceeeccCCcCeEEEEEcCCCCCe-EEEecCCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeee
Q psy11351         68 ----SREEATELAVNSGPFHAVMFNPVEARL-VATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        68 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                          .+...........+|+.+.+.. ++.. +.++ .-..|.+|.+....+.. ....+.....|..|++....+++++
T Consensus       156 i~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~  233 (933)
T KOG2114|consen  156 ILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG  233 (933)
T ss_pred             chhccccceeeeccCCCCceeeEEec-CCceeEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence                1111222223456999999988 5554 3333 33579999988443223 3556888999999998766566665


Q ss_pred             cCCCcEEEECCCCCcceecc
Q psy11351        142 RRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~~  161 (224)
                      .. .+.+|+.....+...+.
T Consensus       234 ~e-~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  234 SE-FLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             Cc-eEEEEcCCCcceeeeec
Confidence            44 59999998777766664

>KOG4640|consensus

Probab=98.15  E-value=1.8e-05  Score=62.81  Aligned_cols=95  Identities=12%  Similarity=0.206  Sum_probs=79.1

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE-EEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH-AVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      -...+.-+.|+|.- .++|.+..+|.+.+..++ -+.+.++.-+...++ +++|.| ++++++.|-.||+|++.|+.++.
T Consensus        19 l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   19 LPINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence            34567889999997 799999999999999988 667888876677777 999999 89999999999999999999987


Q ss_pred             eeeEee-cCCCceeEEEEcC
Q psy11351        114 EVLMQY-GSCESCMSIRFNK  132 (224)
Q Consensus       114 ~~~~~~-~~~~~v~~~~~~~  132 (224)
                      .+.... .....|.++-|++
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            666532 3456778888864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.10  E-value=0.0016  Score=50.90  Aligned_cols=164  Identities=10%  Similarity=0.102  Sum_probs=90.9

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee--ecc------CCcCeEEEEEcC----CCC---CeEEEec
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE--LAV------NSGPFHAVMFNP----VEA---RLVATAN   99 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~------~~~~i~~~~~~~----~~~---~~l~~~~   99 (224)
                      ..++|++++.+.-|  +++.|.++|.+.|.|+|....+..  +..      ....++++.|..    +++   -.+++|+
T Consensus        85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            46899999998776  999999999999999987665433  111      234677787751    122   5788899


Q ss_pred             CCCcEEEEecCC-Cc--eee----EeecCCCceeEEE-EcCC-C-------------------CeEeeeecCCCcEEEEC
Q psy11351        100 SKDGIALYDTRK-PK--EVL----MQYGSCESCMSIR-FNKA-G-------------------TQLLGLRRRLPPVLYNT  151 (224)
Q Consensus       100 ~dg~v~i~d~~~-~~--~~~----~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~v~v~d~  151 (224)
                      ..|.+.+|.+.- ..  -..    ....+.+++..+. |+.+ |                   +.+++...+..++++.+
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998751 11  111    1113455555544 4322 1                   11333344556999998


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeC----CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAG----TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+.+...+.. ....   ....+++.+    ..+..|++-..+|.+++|.+..-++.
T Consensus       243 ~~~k~~~K~~-~~~~---~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  243 PKSKGAHKSF-DDPF---LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             T---EEEEE--SS-E---EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             CCCcccceee-cccc---ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            8776655442 2211   111223311    14566888889999999999998775

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617|consensus

Probab=98.06  E-value=1.9e-05  Score=65.03  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=85.6

Q ss_pred             CCeeEEEEcCCCCcEEEEec----CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         37 RPVYGLSVDPSQDAIFASAC----DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      +.-+-..|+|.. .+|+.++    ..|.|-||- ++|++...... .-.+++++|+| ..-.|+.|-.-|.+.+|...+.
T Consensus        16 avsti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   16 AVSTISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             ccccccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccCh-HHHHHhhccccceeEEEecCCc
Confidence            334456799987 5777764    457888874 56665443322 22357899999 8888999988999999998776


Q ss_pred             ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351        113 KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      +.-.....|..+|..+.||++|..|+++..-|.+.+|...
T Consensus        92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5444444699999999999999999999999999999765

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.04  E-value=0.00057  Score=42.62  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      +.|++|+.|..||+|+-+  +.+..+.-.+.|+++.-...  ..|+.+-.+|+|-+|+-.  +.++.++.... +.++.+
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~   88 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAF   88 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEE
Confidence            579999999999999854  56666667788989887775  479999999999999853  33455554333 556655


Q ss_pred             cCCC---CCeEEEecCCCcEE
Q psy11351         88 NPVE---ARLVATANSKDGIA  105 (224)
Q Consensus        88 ~~~~---~~~l~~~~~dg~v~  105 (224)
                      ...+   ..-|++|-.+|.|-
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEE
Confidence            4312   34788887888764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.04  E-value=0.0028  Score=47.80  Aligned_cols=178  Identities=14%  Similarity=0.155  Sum_probs=99.9

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC-Cccccee----eccCCcCeE-EEEEcCCC
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR-SREEATE----LAVNSGPFH-AVMFNPVE   91 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~----~~~~~~~i~-~~~~~~~~   91 (224)
                      .|.|-|+..++.+..+.-.+   |...-|.++.-|.+-|.||.+.-..+. .|+....    +.....++. .-++.. .
T Consensus       119 SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~  194 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-D  194 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-T
T ss_pred             eEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-C
Confidence            35555556666655554333   222234444668888889999988887 4443221    111122222 223333 3


Q ss_pred             CCeEEEecCCCcEEEEecCCCceeeEee----c--------CCCceeEEEEcCCCCeEeeeec---CC-------CcEEE
Q psy11351         92 ARLVATANSKDGIALYDTRKPKEVLMQY----G--------SCESCMSIRFNKAGTQLLGLRR---RL-------PPVLY  149 (224)
Q Consensus        92 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~----~--------~~~~v~~~~~~~~~~~l~~~~~---d~-------~v~v~  149 (224)
                      +..++--+.+|.|+--|+..........    .        ..+.-.-+++++..+.|++.-.   ++       .|.++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            3344445688999988887654221111    0        1123344788876665555211   11       28888


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE-cCCCCeEEEEeCCCCCeE
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS-GSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~v~iw~~~~~~~~  204 (224)
                      |+.+++.+.++.....+.++.+     +.++..+|++ ...++.+.+||..+|+..
T Consensus       275 D~~t~krv~Ri~l~~~~~Si~V-----sqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  275 DLKTHKRVARIPLEHPIDSIAV-----SQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             ETTTTEEEEEEEEEEEESEEEE-----ESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             ECCCCeEEEEEeCCCccceEEE-----ccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            9999999999865555655444     4444556654 456899999999999886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.03  E-value=0.00085  Score=41.85  Aligned_cols=101  Identities=17%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             eeEEE---EcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee
Q psy11351         39 VYGLS---VDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV  115 (224)
Q Consensus        39 v~~~~---~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  115 (224)
                      |++++   |..+|.+.|++|+.|..|++|+-.  +.+..+.. .+.+.+++-..  ...++.+..+|+|-+|+-..  .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--RL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--ee
Confidence            44454   455666899999999999999743  45566655 44577777665  36799999999999998642  23


Q ss_pred             eEeecCCCceeEEEEcC-CC---CeEeeeecCCCcE
Q psy11351        116 LMQYGSCESCMSIRFNK-AG---TQLLGLRRRLPPV  147 (224)
Q Consensus       116 ~~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~v~  147 (224)
                      .... .+..+.++.+.. ++   ..|++|-.+|.|-
T Consensus        75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3333 334466665543 32   2677777777653

>smart00320 WD40 WD40 repeats

Probab=98.03  E-value=2.6e-05  Score=38.32  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEe
Q psy11351         29 PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFD   65 (224)
Q Consensus        29 ~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd   65 (224)
                      ++..+ .|...|.++.|++.+ ..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            33444 688899999999988 7999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=2.4e-05  Score=38.49  Aligned_cols=38  Identities=32%  Similarity=0.590  Sum_probs=32.3

Q ss_pred             ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEe
Q psy11351         70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYD  108 (224)
Q Consensus        70 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d  108 (224)
                      ++...+..|...|.++.|++ ...++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            34556667888999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079|consensus

Probab=97.98  E-value=0.00024  Score=60.03  Aligned_cols=98  Identities=13%  Similarity=0.197  Sum_probs=71.3

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ..++.|+..|.+-..|+...-.-...  .-.++|++++|+.+| .+++.|-.+|.|.+||+..++..+.+..|..+...+
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            35777888888888887654221111  346899999999999 899999999999999999999888886665544333


Q ss_pred             ---EEcCCCCCeEEEecCCCcEEEEec
Q psy11351         86 ---MFNPVEARLVATANSKDGIALYDT  109 (224)
Q Consensus        86 ---~~~~~~~~~l~~~~~dg~v~i~d~  109 (224)
                         .+.. ++..+.++...|.  +|.+
T Consensus       179 i~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeC-CCcEEEEccCCCc--eEEE
Confidence               3334 4457888877776  4544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.95  E-value=0.0012  Score=50.93  Aligned_cols=182  Identities=14%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-cc-------C---------
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AV-------N---------   78 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-------~---------   78 (224)
                      .+.+.|+|+++++..........+....|+|+| +.++-.. ++.|.+++..+++..+.- .+       -         
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            467899999998776665447789999999998 6777665 579999988766432211 11       0         


Q ss_pred             CcCeEEEEEcCCCCCeEEEecC-CCcE-----------------------------------EEEecCCCceee-Eee--
Q psy11351         79 SGPFHAVMFNPVEARLVATANS-KDGI-----------------------------------ALYDTRKPKEVL-MQY--  119 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~-dg~v-----------------------------------~i~d~~~~~~~~-~~~--  119 (224)
                      -+.-..+-|+| +++.|+.... +..|                                   .++|+.+++... ...  
T Consensus       100 ~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~  178 (353)
T PF00930_consen  100 FDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS  178 (353)
T ss_dssp             SSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred             cccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence            11235788999 7777665532 2222                                   233444332211 111  


Q ss_pred             --cCCCceeEEEEcCCCCeEeee--ecCC---CcEEEECCCCCcceec--ccCCcccceeeeEEEEe-CCCCeEEEEcCC
Q psy11351        120 --GSCESCMSIRFNKAGTQLLGL--RRRL---PPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFA-GTQDEYVVSGSD  189 (224)
Q Consensus       120 --~~~~~v~~~~~~~~~~~l~~~--~~d~---~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~  189 (224)
                        .....+..+.|.++++.++..  +.+.   .+.++|..+++.....  ...+.+..  .....+. +.+..++.....
T Consensus       179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~--~~~~~~~~~~~~~~l~~s~~  256 (353)
T PF00930_consen  179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV--YDPPHFLGPDGNEFLWISER  256 (353)
T ss_dssp             HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS--SSEEEE-TTTSSEEEEEEET
T ss_pred             cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee--ecccccccCCCCEEEEEEEc
Confidence              234457889999998844443  2222   2667788776554443  23344422  1234444 545666666556


Q ss_pred             CC--eEEEEeCCCCC
Q psy11351        190 DF--VLYMWRVPRDD  202 (224)
Q Consensus       190 d~--~v~iw~~~~~~  202 (224)
                      ||  .|.+++...+.
T Consensus       257 ~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  257 DGYRHLYLYDLDGGK  271 (353)
T ss_dssp             TSSEEEEEEETTSSE
T ss_pred             CCCcEEEEEcccccc
Confidence            76  55555666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.94  E-value=0.00069  Score=55.51  Aligned_cols=185  Identities=9%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             ceEEEEEeCC------CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCC-----EEEEEecCCccc--
Q psy11351          7 IKVLRVIGND------DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDG-----RVLLFDTRSREE--   71 (224)
Q Consensus         7 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~--   71 (224)
                      +.+++.|+.+      ..+..||..+++....-  .....-.+++.. ++ ++.+.||.++     ++..||..+++-  
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CC-EEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            4566777753      34677887766533221  111111122222 34 6778888753     478899876642  


Q ss_pred             ceeeccCCcCeEEEEEcCCCCCeEEEecCCC-----------------------cEEEEecCCCceeeEeec-CCCce-e
Q psy11351         72 ATELAVNSGPFHAVMFNPVEARLVATANSKD-----------------------GIALYDTRKPKEVLMQYG-SCESC-M  126 (224)
Q Consensus        72 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~-~~~~v-~  126 (224)
                      +..+.........+..   ++.+.+.|+.++                       .+..||.++.+-. .... ..... .
T Consensus       382 ~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~~r~~~  457 (557)
T PHA02713        382 LPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWTGTIRP  457 (557)
T ss_pred             CCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCcccccC
Confidence            1222211111222222   567777777542                       4677887765321 1111 01111 1


Q ss_pred             EEEEcCCCCeEeeeecC------CCcEEEECCC-CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC--eEEEEe
Q psy11351        127 SIRFNKAGTQLLGLRRR------LPPVLYNTRS-SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF--VLYMWR  197 (224)
Q Consensus       127 ~~~~~~~~~~l~~~~~d------~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~iw~  197 (224)
                      +++ .-+++..+.|+.+      ..+..||+++ .+-...-..+.+...  ...+..   ++.+.++|+.++  .+-.||
T Consensus       458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~~---~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTILH---DNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEEE---CCEEEEEeeecceeehhhcC
Confidence            122 2245655666543      2367888886 332221111111111  111222   788999999888  777888


Q ss_pred             CCCCCe
Q psy11351        198 VPRDDI  203 (224)
Q Consensus       198 ~~~~~~  203 (224)
                      ..+.+-
T Consensus       532 ~~~~~W  537 (557)
T PHA02713        532 VYTYEW  537 (557)
T ss_pred             cccccc
Confidence            887654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.0023  Score=49.95  Aligned_cols=180  Identities=14%  Similarity=0.128  Sum_probs=95.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE---e------ccCCeeEEEEcC----CC---CcEEEEecCCCEEEEEecCC--
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY---L------HERPVYGLSVDP----SQ---DAIFASACDDGRVLLFDTRS--   68 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~------~~~~v~~~~~~~----~~---~~~l~s~~~d~~i~iwd~~~--   68 (224)
                      -.++|.|.++|.+.|.|++....+...   .      ....++++.|.-    ++   .-++++|...|.+.+|.+.-  
T Consensus        97 iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~  176 (395)
T PF08596_consen   97 IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS  176 (395)
T ss_dssp             TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G
T ss_pred             CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC
Confidence            348999999999999999766555432   1      234688888861    11   14788899999999998752  


Q ss_pred             cc-c----ceeeccCCcCeEEEE-EcCCCC--------------------CeEEEecCCCcEEEEecCCCceeeEeecCC
Q psy11351         69 RE-E----ATELAVNSGPFHAVM-FNPVEA--------------------RLVATANSKDGIALYDTRKPKEVLMQYGSC  122 (224)
Q Consensus        69 ~~-~----~~~~~~~~~~i~~~~-~~~~~~--------------------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  122 (224)
                      +. .    ......+.++|..+. ++.+++                    .+++.+ .+..++++...+.+.........
T Consensus       177 ~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~  255 (395)
T PF08596_consen  177 NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDP  255 (395)
T ss_dssp             GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-
T ss_pred             CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccc
Confidence            11 1    111124455555554 322111                    133333 46689999998877666555332


Q ss_pred             CceeEEEEc-----CCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        123 ESCMSIRFN-----KAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       123 ~~v~~~~~~-----~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      .....+.+-     ..+..|++-..+|.+++|.+..-+++...........-.....++++ +|+.++-.+
T Consensus       256 ~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~-~Gdi~~~~g  325 (395)
T PF08596_consen  256 FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR-NGDIFYWTG  325 (395)
T ss_dssp             EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T-TS-EEEE-S
T ss_pred             cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC-CCCEEEEeC
Confidence            333344452     34667888889999999999998888777432221111122345555 677665544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395|consensus

Probab=97.93  E-value=0.00031  Score=55.13  Aligned_cols=140  Identities=16%  Similarity=0.225  Sum_probs=97.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCC------cEEEEecCCCEEEEEecCCccc--ceeeccC--
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD------AIFASACDDGRVLLFDTRSREE--ATELAVN--   78 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~--   78 (224)
                      ++.++.....++-.|++.|+.+........|+-+.+.|+..      .--+.|-.|..|+-||.|-...  +...+.|  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            45566667789999999999998885555588888887652      1123466688899999984332  1111222  


Q ss_pred             --CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         79 --SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        79 --~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                        .....|.+-.  ..-+++.|+.+|.|++||--..+....+.+-..+|..+..+.+|++++..+ +..+.+.++
T Consensus       428 ~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence              1234455443  456899999999999999744444455667888999999999999988765 455767665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.90  E-value=0.0071  Score=49.31  Aligned_cols=191  Identities=12%  Similarity=0.110  Sum_probs=114.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccC--Cee---E-------EEEcCCCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHER--PVY---G-------LSVDPSQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~v~---~-------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      ..++.++.++.|.-.|.++++.+..+....  .+.   +       +++.  + ..++.++.|+.+.-.|.++++.+...
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEEeec
Confidence            466777778899999999999887663221  111   1       1222  2 35677888999999999999987665


Q ss_pred             ccC--Cc--CeEE-EEEcCCCCCeEEEec------CCCcEEEEecCCCceeeEeecC-----------------------
Q psy11351         76 AVN--SG--PFHA-VMFNPVEARLVATAN------SKDGIALYDTRKPKEVLMQYGS-----------------------  121 (224)
Q Consensus        76 ~~~--~~--~i~~-~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~-----------------------  121 (224)
                      ...  ..  .+.+ -...  ++. ++.+.      .+|.|.-+|.++++.+-.+..-                       
T Consensus       147 ~~~~~~~~~~~tssP~v~--~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV--KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             ccccccccccccCCcEEE--CCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            421  10  1111 1111  333 44432      2688999999998766554321                       


Q ss_pred             --------CCce-eEEEEcCCCCeEeeeecC-----C-----------CcEEEECCCCCcceecc---cCCcccceeeeE
Q psy11351        122 --------CESC-MSIRFNKAGTQLLGLRRR-----L-----------PPVLYNTRSSSPVAQFD---HEGYYNSCTMKS  173 (224)
Q Consensus       122 --------~~~v-~~~~~~~~~~~l~~~~~d-----~-----------~v~v~d~~~~~~~~~~~---~~~~~~~~~~~~  173 (224)
                              ...+ ..+++.|....++.+...     +           .|.-.|+++|+....+.   |...-......+
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                    0111 134677766666655422     1           46677888998887763   222211111122


Q ss_pred             EEEe-CCCCe---EEEEcCCCCeEEEEeCCCCCeE
Q psy11351        174 CCFA-GTQDE---YVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       174 ~~~~-~~~~~---~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+. +.++.   .++.+..+|.+++.|..+|+..
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2221 11444   7889999999999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0069  Score=47.37  Aligned_cols=160  Identities=10%  Similarity=0.097  Sum_probs=105.6

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEec--CCCcEEEEecCCCce
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN--SKDGIALYDTRKPKE  114 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~  114 (224)
                      ..-..++.++.+.+.++....+..|.+.|..+.+.......-. .-..++++|.++...++-.  .++.+.+.|..+.+.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            4456788888885577777778999999988777666554322 4578899994434444444  368899999888877


Q ss_pred             eeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcce-e----cccCCcccceeeeEEEEeCCCCeE-EEEc
Q psy11351        115 VLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVA-Q----FDHEGYYNSCTMKSCCFAGTQDEY-VVSG  187 (224)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~-l~s~  187 (224)
                      ......-..+ ..++++|+|+.++... .++.+.+.|..+..... .    .........     ..+.| ++.+ .++.
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~-----i~v~~-~g~~~yV~~  225 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAG-----IAVDP-DGNRVYVAN  225 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCce-----EEECC-CCCEEEEEe
Confidence            6664433334 8899999999777665 67889999977655442 1    111111122     45555 5554 3443


Q ss_pred             CCC--CeEEEEeCCCCCeE
Q psy11351        188 SDD--FVLYMWRVPRDDIY  204 (224)
Q Consensus       188 ~~d--~~v~iw~~~~~~~~  204 (224)
                      ..+  +.+...|..++...
T Consensus       226 ~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         226 DGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             ccCCCceEEEEeCCCceEE
Confidence            333  68888888887664

>KOG1920|consensus

Probab=97.87  E-value=0.00051  Score=58.82  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             eEEEEcCCCCcEEEE-----ecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEec---CCCcEEEEecCC
Q psy11351         40 YGLSVDPSQDAIFAS-----ACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN---SKDGIALYDTRK  111 (224)
Q Consensus        40 ~~~~~~~~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~  111 (224)
                      +.+.|--+| +++++     ....+.|++||.+ +..-..-....+.-.+++|-| .+.++++-.   .|+.|.+|.-+-
T Consensus       199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNG  275 (1265)
T KOG1920|consen  199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNG  275 (1265)
T ss_pred             ceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCC
Confidence            358888888 78887     3333899999977 553333333344557899999 888888763   455688887442


Q ss_pred             C---ceeeEeecCCCceeEEEEcCCCCeEee---eecCCCcEEEECCCCC
Q psy11351        112 P---KEVLMQYGSCESCMSIRFNKAGTQLLG---LRRRLPPVLYNTRSSS  155 (224)
Q Consensus       112 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~v~v~d~~~~~  155 (224)
                      .   .-...+......+..++|+.++..|++   ......|++|-+.+..
T Consensus       276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            1   111122234445899999999999988   4444459999887654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.86  E-value=0.0057  Score=45.46  Aligned_cols=148  Identities=19%  Similarity=0.174  Sum_probs=90.3

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee--------
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE--------   74 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------   74 (224)
                      ....++.|+.|.++| +.+++...........+...|..+...|+- +.+++-+ |+.+.++++..-.....        
T Consensus         3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            445678899999998 999999433333333344459999999976 5555544 59999999875543321        


Q ss_pred             ------eccCCcCeEEEE--EcCCCCCeEEEecCCCcEEEEecCCCc----eeeEeecCCCceeEEEEcCCCCeEeeeec
Q psy11351         75 ------LAVNSGPFHAVM--FNPVEARLVATANSKDGIALYDTRKPK----EVLMQYGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        75 ------~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                            .......+...+  -...+...++.+ ...+|.+|......    ....-..-...+..++|.  ++.++.+..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence                  011122344444  112134455544 45589998876531    122222355788889998  567777765


Q ss_pred             CCCcEEEECCCCCcc
Q psy11351        143 RLPPVLYNTRSSSPV  157 (224)
Q Consensus       143 d~~v~v~d~~~~~~~  157 (224)
                      ++ ..+.|+.++...
T Consensus       157 ~~-f~~idl~~~~~~  170 (275)
T PF00780_consen  157 KG-FYLIDLNTGSPS  170 (275)
T ss_pred             Cc-eEEEecCCCCce
Confidence            54 677888765443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.0026  Score=50.38  Aligned_cols=134  Identities=9%  Similarity=0.032  Sum_probs=76.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .++++++++. ..||.-.|+.........    .+......|.+.  +.+|+-...++|.|+.--+.+....++.. ..+
T Consensus        40 ~npngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~  111 (443)
T PF04053_consen   40 HNPNGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSV  111 (443)
T ss_dssp             E-TTSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT-----S-S-E
T ss_pred             ECCCCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcCC-ccc
Confidence            4567777777 458889999844333322    245567889884  46777777899999743333333344332 223


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      ..+-    .|.+|...+.+ .|.+||..+++.+..+...  +|..+.|+++|++++..+.+ .+.+++..
T Consensus       112 ~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  112 EKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             EEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             ceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            4443    25666666444 8999999998777766533  48999999999999998755 58887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.82  E-value=0.012  Score=48.07  Aligned_cols=138  Identities=7%  Similarity=0.009  Sum_probs=82.6

Q ss_pred             EEEEEecCCcccceeeccCCcCe---------EEEEEcCCCC---CeEEEecCCCcEEEEecCCCceeeE--------ee
Q psy11351         60 RVLLFDTRSREEATELAVNSGPF---------HAVMFNPVEA---RLVATANSKDGIALYDTRKPKEVLM--------QY  119 (224)
Q Consensus        60 ~i~iwd~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~~l~~~~~dg~v~i~d~~~~~~~~~--------~~  119 (224)
                      .|.-.|+++|+....++.....+         .-+.+.. ++   ..++.+.++|.+.+.|.++++.+..        ..
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~  350 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWA  350 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccc
Confidence            67778899999877665322211         1222223 34   3788999999999999999876421        00


Q ss_pred             ---c-CC-Cce----------------------------eEEEEcCCCCeEeeeecC-----------------------
Q psy11351        120 ---G-SC-ESC----------------------------MSIRFNKAGTQLLGLRRR-----------------------  143 (224)
Q Consensus       120 ---~-~~-~~v----------------------------~~~~~~~~~~~l~~~~~d-----------------------  143 (224)
                         . .. .++                            ..++++|+..+++....+                       
T Consensus       351 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (527)
T TIGR03075       351 TGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGL  430 (527)
T ss_pred             cccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccc
Confidence               0 00 000                            125666766555543322                       


Q ss_pred             ----------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 ----------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ----------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                +.+.-+|+.+++.............-.+..      .+.+++.++.||.++.+|.++|+++
T Consensus       431 ~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t------~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       431 TIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT------AGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             ccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEE------CCcEEEEECCCCeEEEEECCCCCEe
Confidence                      346667777777666653322221111111      4567778888999999999999885

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.81  E-value=0.0012  Score=55.45  Aligned_cols=140  Identities=8%  Similarity=0.063  Sum_probs=90.6

Q ss_pred             cEEEE-ecCCCEEEEEecCCcccceeeccCCcC-eEEEEEc----CCCCCeEEEecCCCcEEEEecCCCc-eeeEe----
Q psy11351         50 AIFAS-ACDDGRVLLFDTRSREEATELAVNSGP-FHAVMFN----PVEARLVATANSKDGIALYDTRKPK-EVLMQ----  118 (224)
Q Consensus        50 ~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~----~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~----  118 (224)
                      ++|+. ......++-.|++.|+.+..++.+... |..++=.    ...+..-+.|-.+..+..||.|-.. ++...    
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            34443 345678999999999999988877653 5555321    1123445667778899999999643 22211    


Q ss_pred             ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee-c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        119 YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ-F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                      ........|++-+.+ .++|+|+.+|.||+||.- ++.-++ + +...+|..+.++.      ||+++++.+ +..|.++
T Consensus       574 Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~------DGkwilaTc-~tyLlLi  644 (794)
T PF08553_consen  574 YSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTA------DGKWILATC-KTYLLLI  644 (794)
T ss_pred             cccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecC------CCcEEEEee-cceEEEE
Confidence            123445566665554 478899999999999954 333333 3 3567777766666      899877654 5577777


Q ss_pred             eC
Q psy11351        197 RV  198 (224)
Q Consensus       197 ~~  198 (224)
                      +.
T Consensus       645 ~t  646 (794)
T PF08553_consen  645 DT  646 (794)
T ss_pred             EE
Confidence            75

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.80  E-value=0.0028  Score=51.64  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCC-----CceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---------
Q psy11351          6 PIKVLRVIGNDDHVISHDMAS-----GDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---------   71 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------   71 (224)
                      +|++...  .+++|.+.|..+     .+.+..+.-......++++|+|...++++..+.++.+.|+.+.+.         
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            4554444  357899999988     355566677788899999999966667777799999999987552         


Q ss_pred             ---ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         72 ---ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        72 ---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                         ....+.-.++ ...+|.+ +++.+.+-.-|..|..|++.+
T Consensus       365 ~~vvaevevGlGP-LHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPELGLGP-LHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeeccCCCc-ceEEECC-CCCEEEeEeecceeEEEehHH
Confidence               2222222233 4668888 777777888899999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.80  E-value=0.0064  Score=44.30  Aligned_cols=183  Identities=10%  Similarity=0.146  Sum_probs=98.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc------ceee--
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE------ATEL--   75 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~--   75 (224)
                      .+.++++....+.|..++.+ |+.++.+  .-.+..-.+++..++ .++++--.++.+.++++.....      ...+  
T Consensus        33 ~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l  110 (248)
T PF06977_consen   33 TGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISL  110 (248)
T ss_dssp             TTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEEEEEE-
T ss_pred             CCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhceEEec
Confidence            46688888888899888874 6777666  234568889998777 6777776799999999843221      1111  


Q ss_pred             ---ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC---CceeeEee--------cCCCceeEEEEcCC-CCeEeee
Q psy11351         76 ---AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK---PKEVLMQY--------GSCESCMSIRFNKA-GTQLLGL  140 (224)
Q Consensus        76 ---~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---~~~~~~~~--------~~~~~v~~~~~~~~-~~~l~~~  140 (224)
                         ..+...+..++|+| ..+.|+.+-...-..+|.++.   ........        .....+.+++++|. +++++.+
T Consensus       111 ~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS  189 (248)
T PF06977_consen  111 GFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS  189 (248)
T ss_dssp             --S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE
T ss_pred             ccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEE
Confidence               12345689999999 545555555555566776653   11111111        13345788999997 4556666


Q ss_pred             ecCCCcEEEECCCCCcceecccCC-------cccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        141 RRRLPPVLYNTRSSSPVAQFDHEG-------YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                      ..+..|..+| .+|+.+..+....       .+..  .--+++.+ +|+++++. +-+..++|
T Consensus       190 ~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Q--pEGIa~d~-~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  190 DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQ--PEGIAFDP-DGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             TTTTEEEEE--TT--EEEEEE-STTGGG-SS---S--EEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred             CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCC--ccEEEECC-CCCEEEEc-CCceEEEe
Confidence            6777788888 5677665552221       1111  23356665 56555443 45555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4441|consensus

Probab=97.79  E-value=0.0053  Score=50.47  Aligned_cols=187  Identities=12%  Similarity=0.054  Sum_probs=106.0

Q ss_pred             cceEEEEEeCCC------cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC------CEEEEEecCCccc
Q psy11351          6 PIKVLRVIGNDD------HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD------GRVLLFDTRSREE   71 (224)
Q Consensus         6 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~   71 (224)
                      .+.+++.|+.++      .+..+|..+++.....  .....-.++++..+  .+.++|+.|      .++..||.++++-
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCce
Confidence            456778888773      6889999888655443  33444556666643  688999998      4677888887763


Q ss_pred             ce--eeccCCcCeEEEEEcCCCCCeEEEecCCCc-----EEEEecCCCceeeEeecCCCceeEEEE-cCCCCeEeeeecC
Q psy11351         72 AT--ELAVNSGPFHAVMFNPVEARLVATANSKDG-----IALYDTRKPKEVLMQYGSCESCMSIRF-NKAGTQLLGLRRR  143 (224)
Q Consensus        72 ~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d  143 (224)
                      ..  .+...........+   ++.+.+.|+.||.     +..||.++.+-- .............. .-+|...++|+.+
T Consensus       362 ~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~~r~~~gv~~~~g~iYi~GG~~  437 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLTRRSGHGVAVLGGKLYIIGGGD  437 (571)
T ss_pred             eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCccc-ccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence            22  22222222222222   6789999998875     677887765321 11111112222222 2256666677644


Q ss_pred             C------CcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC-----eEEEEeCCCCCe
Q psy11351        144 L------PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF-----VLYMWRVPRDDI  203 (224)
Q Consensus       144 ~------~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~v~iw~~~~~~~  203 (224)
                      +      ++..||..+++-...-.....-....   ++..  ++.+++.|+.|+     +|..||..+.+-
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g---~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG---VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCcccccccce---EEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence            3      46788887764433321111111111   1221  788888888776     367788877654

>KOG4441|consensus

Probab=97.78  E-value=0.0074  Score=49.65  Aligned_cols=187  Identities=12%  Similarity=0.077  Sum_probs=100.1

Q ss_pred             cceEEEEEeCC------CcEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCCCE-----EEEEecCCccc-
Q psy11351          6 PIKVLRVIGND------DHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGR-----VLLFDTRSREE-   71 (224)
Q Consensus         6 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~-   71 (224)
                      ++.+.++|+.|      .++..||..+++....-.  ....-..++.. +| .+.++|+.||.     +-.||.++.+- 
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g-~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DG-KLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CC-EEEEEeccccccccccEEEecCCCCccc
Confidence            45788999988      357788888777544221  11111122222 24 78899998865     66677776652 


Q ss_pred             -ceeeccCCcCeEEEEEcCCCCCeEEEecCCC------cEEEEecCCCceeeE--eecCCCceeEEEEcCCCCeEeeeec
Q psy11351         72 -ATELAVNSGPFHAVMFNPVEARLVATANSKD------GIALYDTRKPKEVLM--QYGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        72 -~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                       +..+.........+.+   ++.+.++|+.++      .+..||..+..-...  ........ .++. -++...+.|+.
T Consensus       410 ~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~  484 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGF  484 (571)
T ss_pred             ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCc
Confidence             2222221222222222   678888888554      367888876532111  11111111 1222 24566677776


Q ss_pred             CCC-----cEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC-----eEEEEeCCCCCeE
Q psy11351        143 RLP-----PVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF-----VLYMWRVPRDDIY  204 (224)
Q Consensus       143 d~~-----v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~v~iw~~~~~~~~  204 (224)
                      |+.     |..||..+.+-...-..........+  +.+   ++...+.|+.|+     +|..||..+.+-.
T Consensus       485 ~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~--~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  485 DGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV--VVL---GGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             cCCCccceEEEEcCCCCceeEcccCccccccccE--EEE---CCEEEEEecccCccccceeEEcCCCCCcee
Confidence            653     67788876544333211111111111  111   678888888875     6677877776543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.71  E-value=0.0092  Score=43.52  Aligned_cols=178  Identities=11%  Similarity=0.123  Sum_probs=106.8

Q ss_pred             CcceEEEEEeCCC--cEEEEeCCCCceeeEEec--cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          5 DPIKVLRVIGNDD--HVISHDMASGDPIDFYLH--ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         5 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +++.++-+.+.-|  .|+.+|+++++......-  ..--..++...+  .+..-.-.++...+||..+-+.+.++.-. +
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~  130 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-G  130 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEEEEEE-S-S
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEEEEEecC-C
Confidence            3466777777766  699999999988765532  223334555543  56666778899999999988877776432 3


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CC---CceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SC---ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      .=..++.   ++..|+.+.....++.+|..+.+....+.-  ..   ..+..+.|- +|...+-.=....|...|..+|+
T Consensus       131 EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  131 EGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             S--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             cceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence            3355653   455666666677899999887766554442  22   234556665 45554444455668888998887


Q ss_pred             cceecccC----------Cc-ccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        156 PVAQFDHE----------GY-YNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       156 ~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      ....+...          .. ...-.+.-++|.|..+.+++||-.
T Consensus       207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            76654210          00 011235568888877888888743

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079|consensus

Probab=97.69  E-value=0.00032  Score=59.40  Aligned_cols=99  Identities=11%  Similarity=0.065  Sum_probs=73.7

Q ss_pred             CCCeEEEecCCCcEEEEecCCCcee-eEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccc
Q psy11351         91 EARLVATANSKDGIALYDTRKPKEV-LMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNS  168 (224)
Q Consensus        91 ~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~  168 (224)
                      ....++.|+..|.+...|.+..-.+ ..-..-.++|++++|+.+|..++.|-.+|.|.+||...+++++.+ .+..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4567888889999999998764222 222235679999999999999999999999999999999998888 45445444


Q ss_pred             eeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                      +-+  ..+.. ++..++++...|.
T Consensus       178 vi~--v~~t~-~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIF--VGRTS-QNSKLLTSDTGGS  198 (1206)
T ss_pred             EEE--EEEeC-CCcEEEEccCCCc
Confidence            332  33443 4557888887776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.016  Score=43.76  Aligned_cols=172  Identities=13%  Similarity=0.069  Sum_probs=98.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-----e-ccCCeeEEEEcCCCCcEEEEecC------C---CEEEEEecC-Cccc
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-----L-HERPVYGLSVDPSQDAIFASACD------D---GRVLLFDTR-SREE   71 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~~~~~~~~l~s~~~------d---~~i~iwd~~-~~~~   71 (224)
                      ..|+++.  ..+.+++.+++..+..+     + -....+++...|+| .+.++...      +   ..=.+|-+. .+..
T Consensus        78 g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~  154 (307)
T COG3386          78 GRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV  154 (307)
T ss_pred             CeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCE
Confidence            3444442  24677777666553322     1 23567788899998 45554333      1   111344444 4444


Q ss_pred             ceeeccCCcCeEEEEEcCCCCCeEEEe-cCCCcEEEEecCC--C---ce--eeEeecCCCceeEEEEcCCCCeEeeeecC
Q psy11351         72 ATELAVNSGPFHAVMFNPVEARLVATA-NSKDGIALYDTRK--P---KE--VLMQYGSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        72 ~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~--~---~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      ++.+..+-..-+.++|+| +++.++.+ +..+.+.-|++..  +   ..  ...+....+..-.++...+|.+.+++..+
T Consensus       155 ~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         155 VRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            555555455568999999 66555555 4557788887752  1   11  11111244566678888888887655444


Q ss_pred             C-CcEEEECCCCCcceecccC-CcccceeeeEEEEeCCCCe-EEEEcCC
Q psy11351        144 L-PPVLYNTRSSSPVAQFDHE-GYYNSCTMKSCCFAGTQDE-YVVSGSD  189 (224)
Q Consensus       144 ~-~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~l~s~~~  189 (224)
                      + .|.+|+.. ++++..+..+ ..+.+     ++|-..+.+ +++|+..
T Consensus       234 g~~v~~~~pd-G~l~~~i~lP~~~~t~-----~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         234 GGRVVRFNPD-GKLLGEIKLPVKRPTN-----PAFGGPDLNTLYITSAR  276 (307)
T ss_pred             CceEEEECCC-CcEEEEEECCCCCCcc-----ceEeCCCcCEEEEEecC
Confidence            3 89999988 8888887533 44443     555432333 4444443

>PHA03098 kelch-like protein; Provisional

Probab=97.62  E-value=0.013  Score=48.13  Aligned_cols=184  Identities=11%  Similarity=-0.026  Sum_probs=87.8

Q ss_pred             ceEEEEEeCCC------cEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcccce
Q psy11351          7 IKVLRVIGNDD------HVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSREEAT   73 (224)
Q Consensus         7 ~~~l~~~~~dg------~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~   73 (224)
                      +.+++.|+.++      .+..||..+++....-.  ....-.+++.. ++ .+++.|+.+     ..+..||..+++-..
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NN-RIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            34566666442      46778877765533221  11111122222 34 677778765     356778877654211


Q ss_pred             --eeccCCcCeEEEEEcCCCCCeEEEecCC------CcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecC
Q psy11351         74 --ELAVNSGPFHAVMFNPVEARLVATANSK------DGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        74 --~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                        .+...... .+++..  ++.+++.|+.+      ..+..||+.+.+-. ....  ....-.++. ..++...+.|+.+
T Consensus       373 ~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~  447 (534)
T PHA03098        373 EPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWS-KGSPLPISHYGGCAI-YHDGKIYVIGGIS  447 (534)
T ss_pred             CCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeee-ecCCCCccccCceEE-EECCEEEEECCcc
Confidence              11111111 122222  45777777632      35788998765321 1111  000111122 2245555656532


Q ss_pred             --------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        144 --------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       144 --------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                              ..+.+||+.+++-...-....+...  ...+.+   ++..++.|+.+     ..+.+||..+.+
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~--~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN--ASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCccccc--ceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                    1278888876543222111111111  111222   57777777754     478889987664

>KOG2444|consensus

Probab=97.58  E-value=0.00041  Score=48.71  Aligned_cols=142  Identities=13%  Similarity=0.022  Sum_probs=82.0

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eeccCCcCeEEEEEc
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAVNSGPFHAVMFN   88 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~   88 (224)
                      +...+.||.|+=+++...+.....  ...+.+..--+.....++.|+.+|.|.+|......... .+......|-++--.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhh--hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            444566777777776543321111  11111111112223678899999999999886322211 111222334333323


Q ss_pred             CCCCCeEEEecCCCcEEEEecCCCceeeEeecCC-CceeEEEEcCCCCeEeee--ecCCCcEEEECCC
Q psy11351         89 PVEARLVATANSKDGIALYDTRKPKEVLMQYGSC-ESCMSIRFNKAGTQLLGL--RRRLPPVLYNTRS  153 (224)
Q Consensus        89 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~v~v~d~~~  153 (224)
                      -.++.+..++..+|.++.|.+.-.+.+.....|. .+......+..++++..+  +.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            2245688999999999999998777666666666 455555555555666665  6666677776654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.0048  Score=48.96  Aligned_cols=136  Identities=11%  Similarity=0.033  Sum_probs=76.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-----------ccceee
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-----------EEATEL   75 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~   75 (224)
                      |.+|+..+. +.|.+||+++++.+..+.... |..+.|++++ ++++..+.+ .+.|++.+..           .....+
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence            555666654 489999999999999886554 8999999998 788888755 7778776543           022333


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ..-...|.+.+|.. + -++.+. .. .++.  +..++ ...+..-..++.-+.+.|..+.++....|+.+..+.+..
T Consensus       193 ~E~~~~IkSg~W~~-d-~fiYtT-~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  193 HEISERIKSGCWVE-D-CFIYTT-SN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEE-S--SEEEEET-T-EEEEE--TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEecceeEEEEEEc-C-EEEEEc-CC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            33245788899976 4 444443 33 6655  44342 233333345677778888778888888888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.017  Score=42.49  Aligned_cols=166  Identities=9%  Similarity=0.121  Sum_probs=108.6

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC-CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-SGPFHAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      +....+.++.|+|+. +.|++......-.++=-.+|+.+.++.-. -..-..+.+.. ++++.++--.++.+.++.+...
T Consensus        83 g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            445569999999998 56666666666667766778877766321 11234566666 7777777777888888876654


Q ss_pred             ceeeEe---------ecC-CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec----ccC--CcccceeeeEEEE
Q psy11351        113 KEVLMQ---------YGS-CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF----DHE--GYYNSCTMKSCCF  176 (224)
Q Consensus       113 ~~~~~~---------~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~----~~~--~~~~~~~~~~~~~  176 (224)
                      ......         ..+ ......++|+|..+.|..+=+.+-+.||.+..+......    .+.  ..+.-..++.+.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            221111         112 456778999999999998888888888887644311111    111  1122234556788


Q ss_pred             eCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        177 AGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       177 ~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .+..+.+|+-+.+++.+.-.|....
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCC
Confidence            8777888888888888888776654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.53  E-value=0.018  Score=42.25  Aligned_cols=115  Identities=19%  Similarity=0.267  Sum_probs=79.2

Q ss_pred             CCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEE-EEEecCCcccceeeccCCcC--eEEEEEcCCCCCeEEEecC--
Q psy11351         26 SGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV-LLFDTRSREEATELAVNSGP--FHAVMFNPVEARLVATANS--  100 (224)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i-~iwd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~--  100 (224)
                      .++++....-......++|+|.-+.-++-+-.=|+. .++|....+...++...++.  .-.=.|+| ++.+|+..-.  
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndf  135 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDF  135 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCC
Confidence            356555555556667899999877777777766664 67898887766655433321  22346899 8888877643  


Q ss_pred             ---CCcEEEEecCCC-ceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351        101 ---KDGIALYDTRKP-KEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus       101 ---dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                         -|.|-+||.+.. +.+-++..|.-....+.+.+||+.++.+.
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence               366999999854 33445556776778899999999988764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.53  E-value=0.023  Score=44.89  Aligned_cols=46  Identities=11%  Similarity=0.120  Sum_probs=33.9

Q ss_pred             cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC
Q psy11351         18 HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR   67 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~   67 (224)
                      .|+||+... +.+..+  .+ +.+.++.|..+.  .|+.-..||.+++||+.
T Consensus        62 ~I~iys~sG-~ll~~i~w~~-~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSG-KLLSSIPWDS-GRIVGMGWTDDE--ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCC-CEeEEEEECC-CCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence            488888764 444444  33 899999999864  45566689999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444|consensus

Probab=97.50  E-value=0.00051  Score=48.26  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=61.7

Q ss_pred             cceEEEEEeCCCcEEEEeCCCC-ceeeEE-eccCCeeEE-EEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC-cC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASG-DPIDFY-LHERPVYGL-SVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-GP   81 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~-~~~~~v~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~   81 (224)
                      .+.-++.|+.+|.|.+|+.+-. .....+ .-...|.++ .-..++ .+..+++.||.|+.|++...+.+...-.|. .+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc-ceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence            4567899999999999998722 111111 112223222 222333 589999999999999998887666655555 33


Q ss_pred             eEEEEEcCCCCCeEEEe--cCCCcEEEEecC
Q psy11351         82 FHAVMFNPVEARLVATA--NSKDGIALYDTR  110 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~--~~dg~v~i~d~~  110 (224)
                      +.....+. ...+++.+  |.|..++.|++.
T Consensus       148 ~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  148 GEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeEEec-CCceEEeeccccchhhhhcchh
Confidence            33333333 34444444  555556666554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.43  E-value=0.022  Score=47.10  Aligned_cols=125  Identities=10%  Similarity=0.016  Sum_probs=68.1

Q ss_pred             CCcEEEEeCCCCceeeE-EeccCCeeEEEEcCCCCcEEEEec-----CCC--EEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351         16 DDHVISHDMASGDPIDF-YLHERPVYGLSVDPSQDAIFASAC-----DDG--RVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~-----~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      +|.+.-.+-....++.- .+....+...+++|+|....++..     .|.  .|.+++.. +.. ..+.. ......-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceE
Confidence            66665544332222221 133346788999999944444431     243  45555542 222 33322 223778899


Q ss_pred             cCCCCCeEEEecCC------------CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         88 NPVEARLVATANSK------------DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        88 ~~~~~~~l~~~~~d------------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                      +| ++..+++....            +.+.+.++..++...   .....|..+.|||||..++... ++.|++
T Consensus       405 sp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        405 SL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            99 66656555322            223333443322211   2356799999999999888765 466666

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.42  E-value=0.00076  Score=35.27  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=30.2

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE   71 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~   71 (224)
                      ....|.+++|+|.. .++|.+..+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcC
Confidence            35679999999998 79999999999999998 4543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.42  E-value=0.064  Score=45.76  Aligned_cols=200  Identities=12%  Similarity=0.088  Sum_probs=116.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCC---------eeEEEEcC----------------CCCcEEEEecCCCEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERP---------VYGLSVDP----------------SQDAIFASACDDGRV   61 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~----------------~~~~~l~s~~~d~~i   61 (224)
                      +..+..++.++.|.-.|..+|+.+..+.....         ...+.+..                .+ ..++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~-~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA-RRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccC-CEEEEecCCCeE
Confidence            45677788889999999999998877632221         12233321                12 478888889999


Q ss_pred             EEEecCCcccceeeccCCcCeE-------------EEEEcCC-CCCeEEEecC----------CCcEEEEecCCCceeeE
Q psy11351         62 LLFDTRSREEATELAVNSGPFH-------------AVMFNPV-EARLVATANS----------KDGIALYDTRKPKEVLM  117 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~i~-------------~~~~~~~-~~~~l~~~~~----------dg~v~i~d~~~~~~~~~  117 (224)
                      .-.|.++|+....+.. .+.+.             .+.-.|. .+..++.|+.          +|.|+-+|.++++..-.
T Consensus       273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999999998766532 11110             0111110 1234555532          68899999999987766


Q ss_pred             eecC---------C--------Cce-eEEEEcCCCCeEeeee------------------cCCCcEEEECCCCCcceecc
Q psy11351        118 QYGS---------C--------ESC-MSIRFNKAGTQLLGLR------------------RRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus       118 ~~~~---------~--------~~v-~~~~~~~~~~~l~~~~------------------~d~~v~v~d~~~~~~~~~~~  161 (224)
                      +..-         .        ..+ ..+++++....++.+.                  ..+.|.-.|.++|+....+.
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ  431 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence            5410         0        011 2345555544444321                  12346666888888877663


Q ss_pred             ---cCCcccceeeeEEE--EeCCCC---eEEEEcCCCCeEEEEeCCCCCeEeeee
Q psy11351        162 ---HEGYYNSCTMKSCC--FAGTQD---EYVVSGSDDFVLYMWRVPRDDIYVSSD  208 (224)
Q Consensus       162 ---~~~~~~~~~~~~~~--~~~~~~---~~l~s~~~d~~v~iw~~~~~~~~~~~~  208 (224)
                         |.-.-..+...+..  +...++   ..++.++.+|.++++|.++|+...+.+
T Consensus       432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence               21111111111111  111133   378999999999999999999864433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.34  E-value=0.066  Score=44.36  Aligned_cols=141  Identities=10%  Similarity=0.055  Sum_probs=75.3

Q ss_pred             CCCCcceEEEEEe------CCC--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecC------------CCEE
Q psy11351          2 ASGDPIKVLRVIG------NDD--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD------------DGRV   61 (224)
Q Consensus         2 a~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------d~~i   61 (224)
                      +.+.+|+.++...      .|.  .+.+++.. ++..... .....+.-.|+|+| ..+.+...            .+.+
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt-~g~~~t~PsWspDG-~~lw~v~dg~~~~~v~~~~~~gql  432 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVL-EGHSLTRPSWSLDA-DAVWVVVDGNTVVRVIRDPATGQL  432 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeee-cCCCCCCceECCCC-CceEEEecCcceEEEeccCCCceE
Confidence            3456666665544      243  45555543 2222222 22347888999997 55555432            2334


Q ss_pred             EEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEE---EecCCCce-e---eEeec-CCCceeEEEEcCC
Q psy11351         62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL---YDTRKPKE-V---LMQYG-SCESCMSIRFNKA  133 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i---~d~~~~~~-~---~~~~~-~~~~v~~~~~~~~  133 (224)
                      .+.++..+....   ...+.|..+.|+| ++..++... ++.|.+   -....+.. +   ..+.. ....+..+.|.++
T Consensus       433 ~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~  507 (591)
T PRK13616        433 ARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTG  507 (591)
T ss_pred             EEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecC
Confidence            333444433322   2345799999999 777666554 467766   33233321 1   11222 3334688999999


Q ss_pred             CCeEeeeecCCCcEEEEC
Q psy11351        134 GTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus       134 ~~~l~~~~~d~~v~v~d~  151 (224)
                      +.++ ++..++...+|.+
T Consensus       508 ~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        508 DSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CEEE-EEecCCCCceEEE
Confidence            8855 5444444444543

>PHA02790 Kelch-like protein; Provisional

Probab=97.30  E-value=0.065  Score=43.41  Aligned_cols=180  Identities=8%  Similarity=-0.088  Sum_probs=87.5

Q ss_pred             ceEEEEEeCCC-----cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC--CEEEEEecCCccc--ceee
Q psy11351          7 IKVLRVIGNDD-----HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD--GRVLLFDTRSREE--ATEL   75 (224)
Q Consensus         7 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~--~~~~   75 (224)
                      +.+++.|+.++     ++..||..+++....-  .....-.+++. -++ .+.+.|+.+  .++..||..+++-  +..+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            45667777543     4677888776543322  11111112222 234 677777754  3577888765542  1222


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCC---cEEEEecCCCceeeEeec---CCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKD---GIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      .........+..   ++.+.+.|+.++   .+..||.++.+-. ....   ..... ++ ..-+++..+.|+   .+.+|
T Consensus       350 ~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~-~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~y  420 (480)
T PHA02790        350 LKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQ-FGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFY  420 (480)
T ss_pred             CCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEE-eCCCCCCccccc-eE-EEECCEEEEECC---ceEEe
Confidence            211111222222   567888887653   4678888765321 1111   11111 12 122455555553   46788


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                      |.++++-...-....+...  ...+..   ++..++.|+.+     ..+..||..+++
T Consensus       421 dp~~~~W~~~~~m~~~r~~--~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDN--PELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             cCCCCcEeEcCCCCCCccc--cEEEEE---CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            8876543322111111111  111111   67888888754     357788877653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.28  E-value=0.025  Score=42.07  Aligned_cols=141  Identities=13%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             cEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-----------
Q psy11351         50 AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-----------  118 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-----------  118 (224)
                      +.|+.|..+| +.++++........+. +...|..+...| +-+.+++- .|+.+.++++.........           
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence            7888899888 8999983332222222 223499999998 55555555 3599999998765433311           


Q ss_pred             ---ecCCCceeEEE--EcCCCCeEeeeecCCCcEEEECCCC-----CcceecccCCcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        119 ---YGSCESCMSIR--FNKAGTQLLGLRRRLPPVLYNTRSS-----SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       119 ---~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                         ......+...+  -...+...++.....+|.+|.....     +..+++.....+..     ++|.   ++.++.|.
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~-----i~~~---~~~i~v~~  155 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSS-----IAFL---GNKICVGT  155 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEE-----EEEe---CCEEEEEe
Confidence               11222333333  1123333444444557888887653     34445544454444     4443   45566665


Q ss_pred             CCCeEEEEeCCCCCe
Q psy11351        189 DDFVLYMWRVPRDDI  203 (224)
Q Consensus       189 ~d~~v~iw~~~~~~~  203 (224)
                      .+ ...+.|+.++..
T Consensus       156 ~~-~f~~idl~~~~~  169 (275)
T PF00780_consen  156 SK-GFYLIDLNTGSP  169 (275)
T ss_pred             CC-ceEEEecCCCCc
Confidence            44 467788886644

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630|consensus

Probab=97.28  E-value=0.013  Score=50.63  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCC-------c---------eeeEE--eccCCeeEEEEcCCCCcE--EEEecCCCEEE
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASG-------D---------PIDFY--LHERPVYGLSVDPSQDAI--FASACDDGRVL   62 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~-------~---------~~~~~--~~~~~v~~~~~~~~~~~~--l~s~~~d~~i~   62 (224)
                      ..+.-..+++++..+.+.++-...-       +         ....+  .-.-++..+..++++ ..  +...+.+-.|.
T Consensus        49 ~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~-t~s~v~~tsng~~v~  127 (1405)
T KOG3630|consen   49 ISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDA-TDSVVVSTSNGEAVY  127 (1405)
T ss_pred             cccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCC-ceEEEEEecCCceEE
Confidence            3344445666666776666654321       0         01111  223456666666764 33  33344455788


Q ss_pred             EEecCCcccc-----eee------ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEc
Q psy11351         63 LFDTRSREEA-----TEL------AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN  131 (224)
Q Consensus        63 iwd~~~~~~~-----~~~------~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~  131 (224)
                      .||+++-...     ..+      ........++.|+|.-....+....|+.|++..+...........-....++++|+
T Consensus       128 ~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS  207 (1405)
T KOG3630|consen  128 SFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS  207 (1405)
T ss_pred             EEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEec
Confidence            9998754311     111      12223456888999656677778889999888876544333333456678999999


Q ss_pred             CCCCeEeeeecCCCcEEEECC
Q psy11351        132 KAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus       132 ~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      |.|+.++.|...|++.-|...
T Consensus       208 prGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  208 PRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             cccceeeEecCCCeEEEeecc
Confidence            999999999999999888653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.28  E-value=0.0014  Score=34.25  Aligned_cols=33  Identities=12%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      ...|.+++|+| ...++|.++.+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence            45699999999 8999999999999999998 443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.059  Score=40.76  Aligned_cols=183  Identities=12%  Similarity=0.035  Sum_probs=99.8

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec----c-CCcCe
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA----V-NSGPF   82 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~-~~~~i   82 (224)
                      .++.+--..+.|.-|+..+++... +.+.+.+.++..-..+ ..|+++..  -+.+++.+++..+..+.    + ....-
T Consensus        38 ~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~  113 (307)
T COG3386          38 ALLWVDILGGRIHRLDPETGKKRV-FPSPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRP  113 (307)
T ss_pred             EEEEEeCCCCeEEEecCCcCceEE-EECCCCcccceeecCC-CeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCC
Confidence            345555567778888877654433 3334444444443333 35555443  45556665555422221    1 12355


Q ss_pred             EEEEEcCCCCCeEEEecC-----------CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-CCcEEEE
Q psy11351         83 HAVMFNPVEARLVATANS-----------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-LPPVLYN  150 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~v~d  150 (224)
                      +.+...| ++.+.++...           -|.++.+|. .+........+-..-+.++||||++.|+.+... +.|+-|+
T Consensus       114 ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         114 NDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            7888888 6666665433           133444443 344444444445556789999999988877553 6677777


Q ss_pred             CCC--CCcc----ee-cc-cCCcccceeeeEEEEeCCCCeEEEEcCCCC-eEEEEeCCCCCe
Q psy11351        151 TRS--SSPV----AQ-FD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDF-VLYMWRVPRDDI  203 (224)
Q Consensus       151 ~~~--~~~~----~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~iw~~~~~~~  203 (224)
                      +..  +...    .. +. ..+..-.+.+..      ++.+.+++-.+| .|..|+.. +++
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa------dG~lw~~a~~~g~~v~~~~pd-G~l  246 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDA------DGNLWVAAVWGGGRVVRFNPD-GKL  246 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeC------CCCEEEecccCCceEEEECCC-CcE
Confidence            652  1111    11 11 223334433333      666665544444 89999988 555

>KOG2395|consensus

Probab=97.11  E-value=0.015  Score=46.12  Aligned_cols=139  Identities=9%  Similarity=0.071  Sum_probs=88.8

Q ss_pred             EEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCC------CCeEEEecCCCcEEEEecCCCce-eeEee-c--
Q psy11351         51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVE------ARLVATANSKDGIALYDTRKPKE-VLMQY-G--  120 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~v~i~d~~~~~~-~~~~~-~--  120 (224)
                      +|.++.....++-.|++.|+.+..++-+.. |+-+.+.|+.      ...-+.|-.+..|.-||.|-... ..... .  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455666677888889999999888877666 7777777731      11223455778899999985433 22221 1  


Q ss_pred             --CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        121 --SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       121 --~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                        ....-.|.+-. ...++++|+.+|.|++||. .++..++.  +....+..+..+.      +|.++++.. +..+.+-
T Consensus       427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvta------dGKwil~Tc-~tyLlLi  497 (644)
T KOG2395|consen  427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTA------DGKWILATC-KTYLLLI  497 (644)
T ss_pred             cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeec------cCcEEEEec-ccEEEEE
Confidence              12223333333 3458899999999999997 44443333  4566777666665      788766544 5566666


Q ss_pred             eCC
Q psy11351        197 RVP  199 (224)
Q Consensus       197 ~~~  199 (224)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            654

>PHA02713 hypothetical protein; Provisional

Probab=97.08  E-value=0.096  Score=43.27  Aligned_cols=169  Identities=10%  Similarity=0.059  Sum_probs=83.5

Q ss_pred             cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC------CEEEEEecCCccc--ceeeccCCcCeEEEEE
Q psy11351         18 HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD------GRVLLFDTRSREE--ATELAVNSGPFHAVMF   87 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~   87 (224)
                      .+..||..+++....-  .....-.+++.. ++ .+++.|+.+      ..+..||.+++.-  +..+.........+.+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l-~~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIV-DN-EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEE-CC-EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            5778888877644322  111111223333 34 677777753      3577888877642  1122111112222222


Q ss_pred             cCCCCCeEEEecCCC-----cEEEEecCCCceeeEeec---CCCceeEEEEcCCCCeEeeeecCC---------------
Q psy11351         88 NPVEARLVATANSKD-----GIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLGLRRRL---------------  144 (224)
Q Consensus        88 ~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~---------------  144 (224)
                         ++.+.+.|+.++     .+..||..+.+- .....   .......+.+  +|...+.|+.++               
T Consensus       351 ---~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~  424 (557)
T PHA02713        351 ---DDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDM  424 (557)
T ss_pred             ---CCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccc
Confidence               567888887754     378899876532 11111   1111112222  566666666442               


Q ss_pred             --------CcEEEECCCCCcceeccc-CCcccceeeeEEEEeCCCCeEEEEcCCC------CeEEEEeCCC
Q psy11351        145 --------PPVLYNTRSSSPVAQFDH-EGYYNSCTMKSCCFAGTQDEYVVSGSDD------FVLYMWRVPR  200 (224)
Q Consensus       145 --------~v~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~v~iw~~~~  200 (224)
                              .+..||+.+.+-...-.. ........   +.+   ++...+.|+.+      ..+..||..+
T Consensus       425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~---~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV---VSH---KDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cccccccceEEEECCCCCeEeecCCCCcccccCcE---EEE---CCEEEEEeCCCCCCccceeEEEecCCC
Confidence                    366788776533211111 11111111   111   67777777654      2467899887

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.97  E-value=0.0045  Score=47.91  Aligned_cols=82  Identities=13%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-C--------------
Q psy11351         57 DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-S--------------  121 (224)
Q Consensus        57 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~--------------  121 (224)
                      ..+.+.+||+++++....... ...+....|+| +++.++.. .++.|.+++..++.. ..+.. .              
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v-~~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFV-RDNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEE-ETTEEEEESSTTSEE-EESES--TTTEEESB--HHHH
T ss_pred             cceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEE-ecCceEEEECCCCCe-EEeccccceeEEcCccceecc
Confidence            346889999998764333333 56788999999 78888877 567899999877633 22221 0              


Q ss_pred             ---CCceeEEEEcCCCCeEeeeec
Q psy11351        122 ---CESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus       122 ---~~~v~~~~~~~~~~~l~~~~~  142 (224)
                         -+.-..+-|||||++|+....
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccccceEECCCCCEEEEEEE
Confidence               122356889999999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1897|consensus

Probab=96.95  E-value=0.17  Score=43.43  Aligned_cols=172  Identities=10%  Similarity=0.140  Sum_probs=108.8

Q ss_pred             cEEEEeCCCCceeeEE--e---ccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEecCCcccceeecc--CCc
Q psy11351         18 HVISHDMASGDPIDFY--L---HERPVYGLSVDPSQDAIFASAC----------DDGRVLLFDTRSREEATELAV--NSG   80 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~--~---~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~--~~~   80 (224)
                      .++++|-++-+.+...  .   -...+.++.|..+.+.+++.|.          ..|.|.++.+..++.+.....  -++
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            4677777776655433  1   2234555568877547777763          347888888776443333322  234


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC--cce
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS--PVA  158 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~--~~~  158 (224)
                      .+.++..-  +++++|.  -+..|++|+..+.+.+..-..+..++..+...-.|..+++|..-+++.+...+..+  .+.
T Consensus       831 av~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  831 AVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             ceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence            55555433  4566654  45689999999886666666788889999999999999999877777766554333  332


Q ss_pred             ecc--cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        159 QFD--HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       159 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .-+  ++.....+.+.       +++.++.+..+|.+++-..++
T Consensus       907 vArD~~p~Wmtaveil-------~~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  907 VARDYNPNWMTAVEIL-------DDDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             eehhhCccceeeEEEe-------cCceEEeecccccEEEEEecC
Confidence            222  44444443332       456666667788888876654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.93  E-value=0.21  Score=42.77  Aligned_cols=152  Identities=13%  Similarity=0.142  Sum_probs=91.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCee-------------EEEEcC--CCCcEEEEecC----------CCEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVY-------------GLSVDP--SQDAIFASACD----------DGRV   61 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~l~s~~~----------d~~i   61 (224)
                      +..++.++.|+.+.-.|.++|+....++..+.+.             .+.-.|  .+ ..++.|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence            3477888889999999999999987775444331             111112  12 35555642          6899


Q ss_pred             EEEecCCcccceeeccC---------Cc--------Ce-EEEEEcCCCCCeEEEec------------------CCCcEE
Q psy11351         62 LLFDTRSREEATELAVN---------SG--------PF-HAVMFNPVEARLVATAN------------------SKDGIA  105 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~---------~~--------~i-~~~~~~~~~~~~l~~~~------------------~dg~v~  105 (224)
                      +-+|.++|+.+..+..-         .+        .+ ..+++++ ...+++.+.                  ..+.|.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            99999999987665311         00        11 2344555 333333321                  123455


Q ss_pred             EEecCCCceeeEeec--CC-------CceeEEEEcC-CCC---eEeeeecCCCcEEEECCCCCcceec
Q psy11351        106 LYDTRKPKEVLMQYG--SC-------ESCMSIRFNK-AGT---QLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       106 i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~-~~~---~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      -.|.++++..-.+..  |.       ....-+.+.. +|+   .++.++.+|.++++|.++|+++...
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            567777766555543  11       1111122332 553   7888899999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.84  E-value=0.0091  Score=30.32  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             cCeEEEEEcCCCC--CeEEEecCCCcEEEEecCCC
Q psy11351         80 GPFHAVMFNPVEA--RLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        80 ~~i~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~  112 (224)
                      +.+.++.|+|...  .+|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999998455  68998888899999999953

It contains a characteristic DLL sequence motif.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.82  E-value=0.075  Score=41.67  Aligned_cols=103  Identities=9%  Similarity=0.065  Sum_probs=53.9

Q ss_pred             CCCcEEEEeCCCCceeeEEec--c-CCeeEEEEcC--CCCcEEEEecCCCEEEEEec-CCcc----cceeec--------
Q psy11351         15 NDDHVISHDMASGDPIDFYLH--E-RPVYGLSVDP--SQDAIFASACDDGRVLLFDT-RSRE----EATELA--------   76 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~--~-~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~-~~~~----~~~~~~--------   76 (224)
                      ...++.+||+.+.+.+..+..  + .....+.|..  +...-++.+.-..+|..|-- +.++    .+..+.        
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            346899999999999988832  2 3577888864  44334555555566655543 3332    111111        


Q ss_pred             ---------cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE
Q psy11351         77 ---------VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM  117 (224)
Q Consensus        77 ---------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  117 (224)
                               .-..-|+.|..+.++..+.+++=..|.++.||+.....+..
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence                     11345799999994444445555689999999987655443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.81  E-value=0.18  Score=39.99  Aligned_cols=39  Identities=10%  Similarity=0.059  Sum_probs=32.1

Q ss_pred             CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351        122 CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .+++..|+.||++++++.-..+|.+.+.+..-.+.+.++
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            468999999999999999999999988876655555555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.80  E-value=0.068  Score=41.32  Aligned_cols=160  Identities=12%  Similarity=0.102  Sum_probs=73.9

Q ss_pred             eCCCCceeeEE------eccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         23 DMASGDPIDFY------LHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        23 d~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      |..+|-.+..+      .|.-..+.=+|.++|.++|+.+..||  .+.+.|+.+++..+.-.+.........++| +.+.
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~   94 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRA   94 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCe
Confidence            55666555544      23334445567888877777776665  456667888775443333222233456667 5566


Q ss_pred             EEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEc--CCCCeEeeeec---C-------------------CCcEEEE
Q psy11351         95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN--KAGTQLLGLRR---R-------------------LPPVLYN  150 (224)
Q Consensus        95 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~---d-------------------~~v~v~d  150 (224)
                      ++-...+..|.-.|+++.+......-....+-...|.  .++..++-.-.   |                   ..|.-.|
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            5544455688888999887655444455555545553  34555433211   1                   1244446


Q ss_pred             CCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        151 TRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      +.+|+....+.....+.     .+.|+|.+..+|+-|-
T Consensus       175 l~tG~~~~v~~~~~wlg-----H~~fsP~dp~li~fCH  207 (386)
T PF14583_consen  175 LKTGERKVVFEDTDWLG-----HVQFSPTDPTLIMFCH  207 (386)
T ss_dssp             TTT--EEEEEEESS-EE-----EEEEETTEEEEEEEEE
T ss_pred             CCCCceeEEEecCcccc-----CcccCCCCCCEEEEec
Confidence            66665544443333322     3667776666665543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.79  E-value=0.066  Score=34.74  Aligned_cols=114  Identities=10%  Similarity=0.058  Sum_probs=73.3

Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCc-------eeeEeecCCCceeEEEEcC-----CCCeEeeeecCCCcEEEECC
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPK-------EVLMQYGSCESCMSIRFNK-----AGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~v~d~~  152 (224)
                      -.|.. ....|++++..|+|.|++.....       ....+..-...|++++-.+     ....|+.|+. ..+..||+.
T Consensus         4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            35655 45577788888999999876432       1223444566777775443     2446676665 459999999


Q ss_pred             CCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ....+.....+..++++.+......  ...+++.|+ +..|.-||....+.
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~--~~~l~ivGG-ncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDI--PSPLVIVGG-NCSIQGFDYEGNEI  129 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCC--CCcEEEECc-eEEEEEeCCCCcEE
Confidence            8877666566677888776543332  345555554 67888888766554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.79  E-value=0.0084  Score=30.45  Aligned_cols=32  Identities=34%  Similarity=0.417  Sum_probs=27.4

Q ss_pred             CCeeEEEEcCCCC--cEEEEecCCCEEEEEecCC
Q psy11351         37 RPVYGLSVDPSQD--AIFASACDDGRVLLFDTRS   68 (224)
Q Consensus        37 ~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~   68 (224)
                      +++.++.|+|...  .+|+-+-..+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998664  5888888889999999995

It contains a characteristic DLL sequence motif.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.72  E-value=0.21  Score=39.56  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=66.5

Q ss_pred             eeEEEEcCCCCcEEE-Ee----cCCCEEEEEecCCcccceee-ccCCcCeEEEEEcCCCCCeE-EEecC----------C
Q psy11351         39 VYGLSVDPSQDAIFA-SA----CDDGRVLLFDTRSREEATEL-AVNSGPFHAVMFNPVEARLV-ATANS----------K  101 (224)
Q Consensus        39 v~~~~~~~~~~~~l~-s~----~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l-~~~~~----------d  101 (224)
                      +....++|++ ++++ +-    ++...++++|+++++.+... .. . ....+.|.+ ++..| .+...          .
T Consensus       126 ~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence            3357889999 5555 32    33356999999999765432 22 1 123499999 55554 44422          2


Q ss_pred             CcEEEEecCCCcee--eEeecCC-Cc-eeEEEEcCCCCeEeeeecC----CCcEEEECCCC
Q psy11351        102 DGIALYDTRKPKEV--LMQYGSC-ES-CMSIRFNKAGTQLLGLRRR----LPPVLYNTRSS  154 (224)
Q Consensus       102 g~v~i~d~~~~~~~--~~~~~~~-~~-v~~~~~~~~~~~l~~~~~d----~~v~v~d~~~~  154 (224)
                      ..|..|.+.+....  ..+.... .. ...+..++++++++.....    ..+++.++..+
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            23778888766433  3333322 22 5678899999998865433    34778888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.63  E-value=0.25  Score=39.21  Aligned_cols=190  Identities=12%  Similarity=0.094  Sum_probs=97.8

Q ss_pred             CCCcceEEEEE-eCCC----cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecC----------CCEEEEEecC
Q psy11351          3 SGDPIKVLRVI-GNDD----HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD----------DGRVLLFDTR   67 (224)
Q Consensus         3 ~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----------d~~i~iwd~~   67 (224)
                      ++.+++++|-+ +..|    ++++.|+++++.+...-.......+.|.+++..++.+...          ...|+.|.+.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g  210 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG  210 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence            45667776644 4444    4999999999776533111122239999998444455422          3347788877


Q ss_pred             Ccccc--eeeccCCcC--eEEEEEcCCCCCeEEEe-cC--C-CcEEEEecCCC----ceeeEeecCCCceeE-EEEcCCC
Q psy11351         68 SREEA--TELAVNSGP--FHAVMFNPVEARLVATA-NS--K-DGIALYDTRKP----KEVLMQYGSCESCMS-IRFNKAG  134 (224)
Q Consensus        68 ~~~~~--~~~~~~~~~--i~~~~~~~~~~~~l~~~-~~--d-g~v~i~d~~~~----~~~~~~~~~~~~v~~-~~~~~~~  134 (224)
                      +....  ..+......  ...+..++ ++++++.. ..  + ..+.+.|+...    .....+......+.. +... .+
T Consensus       211 t~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~  288 (414)
T PF02897_consen  211 TPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD  288 (414)
T ss_dssp             S-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT
T ss_pred             CChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC
Confidence            66533  333333332  56888888 66666543 22  2 34788888764    233444444444433 3333 33


Q ss_pred             CeEeeee---cCCCcEEEECCCCCc---ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCC--eEEEEeCC
Q psy11351        135 TQLLGLR---RRLPPVLYNTRSSSP---VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF--VLYMWRVP  199 (224)
Q Consensus       135 ~~l~~~~---~d~~v~v~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~iw~~~  199 (224)
                      .+++...   ..+.|.-.++.....   ...+ .+...+.   +..+...  .+.+++.-..++  .|+++++.
T Consensus       289 ~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~---l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  289 RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS---LEDVSLF--KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE---EEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee---EEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence            3443332   234566667766553   1122 3333211   2122221  445555555554  77888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4499|consensus

Probab=96.58  E-value=0.16  Score=36.42  Aligned_cols=102  Identities=14%  Similarity=0.042  Sum_probs=69.4

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCEEEEEe--cCCccc-----ceeecc---CCc-CeEEEEEcCCCCCeEEEecCCCcEE
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGRVLLFD--TRSREE-----ATELAV---NSG-PFHAVMFNPVEARLVATANSKDGIA  105 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~~~-----~~~~~~---~~~-~i~~~~~~~~~~~~l~~~~~dg~v~  105 (224)
                      .--+.++|+.+...+..+-+.+-+|.-||  ..+|..     +..++.   .+. .--.+++.. +++++++.-..++|.
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ  236 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence            44567889877756677778888888888  444432     222211   111 112344455 788888888889999


Q ss_pred             EEecCCCceeeEeecCCCceeEEEEcC-CCCeEee
Q psy11351        106 LYDTRKPKEVLMQYGSCESCMSIRFNK-AGTQLLG  139 (224)
Q Consensus       106 i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  139 (224)
                      ..|..+++.+..+.-....+++++|-- +-..|++
T Consensus       237 ~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  237 KVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             EECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            999999999999888889999999953 3334443

>PHA03098 kelch-like protein; Provisional

Probab=96.49  E-value=0.16  Score=41.83  Aligned_cols=143  Identities=8%  Similarity=0.003  Sum_probs=69.6

Q ss_pred             cceEEEEEeCC-----CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC------CEEEEEecCCcccc
Q psy11351          6 PIKVLRVIGND-----DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD------GRVLLFDTRSREEA   72 (224)
Q Consensus         6 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~   72 (224)
                      .+++++.|+.+     ..+..||..+++....-  .+...-.+++.. ++ ++++.|+.+      ..+..||..+++-.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            35667777765     34677888766543321  111111122222 34 677777732      46788998766422


Q ss_pred             e--eeccCCcCeEEEEEcCCCCCeEEEecCCC--------cEEEEecCCCceeeE--eecCCCceeEEEEcCCCCeEeee
Q psy11351         73 T--ELAVNSGPFHAVMFNPVEARLVATANSKD--------GIALYDTRKPKEVLM--QYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        73 ~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      .  .+...... .+++..  ++.+++.|+.+.        .+.+||..+.+-...  ..........+.+  +++.++.|
T Consensus       420 ~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G  494 (534)
T PHA03098        420 KGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVG  494 (534)
T ss_pred             ecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEc
Confidence            1  11111111 122222  456777776432        388889876532111  1111111122222  55666666


Q ss_pred             ecC-----CCcEEEECCCCC
Q psy11351        141 RRR-----LPPVLYNTRSSS  155 (224)
Q Consensus       141 ~~d-----~~v~v~d~~~~~  155 (224)
                      +.+     +.+.+||+.+.+
T Consensus       495 G~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcCCcccceeEEEeCCCCE
Confidence            543     357778776543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.39  E-value=0.15  Score=41.43  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             eccCCeeEEEEcCCC----CcEEEEecCCCEEEEEecCC-----cccceeeccC---CcC--eEEEEEcCCCCCeEEEec
Q psy11351         34 LHERPVYGLSVDPSQ----DAIFASACDDGRVLLFDTRS-----REEATELAVN---SGP--FHAVMFNPVEARLVATAN   99 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~---~~~--i~~~~~~~~~~~~l~~~~   99 (224)
                      +.-..|..+.|.|-+    +.+|| ......|.+|.+..     ++.+..-..+   .-+  -..+.|+| ....|+.-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEE-EeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEe
Confidence            455669999999853    33455 45568999998852     2221111100   011  13568999 777776665


Q ss_pred             CCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeeecC-CCcEEEECC
Q psy11351        100 SKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLRRR-LPPVLYNTR  152 (224)
Q Consensus       100 ~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~v~d~~  152 (224)
                      ....-.+++++...... .-....+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            55454566766443322 223567889999999999988776433 235688753

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.38  E-value=0.25  Score=36.31  Aligned_cols=166  Identities=8%  Similarity=0.021  Sum_probs=99.4

Q ss_pred             eeeEEeccC--CeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeeccCC-cCeEEEEEcCCCCCeEEEecCCCc
Q psy11351         29 PIDFYLHER--PVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAVNS-GPFHAVMFNPVEARLVATANSKDG  103 (224)
Q Consensus        29 ~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~  103 (224)
                      .+..+.|+.  -...+.|..++ .++-+.+.-|  .|+.+|+.+++......-.. ---..++...  +.++.-.=.++.
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~  111 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred             EEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence            344555643  45677886776 7777877766  78899999988654432211 1112333333  355555567889


Q ss_pred             EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc---cCCcccceeeeEEEEeCCC
Q psy11351        104 IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD---HEGYYNSCTMKSCCFAGTQ  180 (224)
Q Consensus       104 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  180 (224)
                      ..+||..+.+.+..+. ..+.=+.++  .+++.|+.+.....++.+|..+.+....+.   ...++..  +..+.|.  +
T Consensus       112 ~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~--LNELE~i--~  184 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN--LNELEYI--N  184 (264)
T ss_dssp             EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-----EEEEEEE--T
T ss_pred             EEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC--cEeEEEE--c
Confidence            9999999887766654 234446666  567788887777789999998877766662   2223332  3345554  5


Q ss_pred             CeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        181 DEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       181 ~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +...+=.=....|...|..+|+..
T Consensus       185 G~IyANVW~td~I~~Idp~tG~V~  208 (264)
T PF05096_consen  185 GKIYANVWQTDRIVRIDPETGKVV  208 (264)
T ss_dssp             TEEEEEETTSSEEEEEETTT-BEE
T ss_pred             CEEEEEeCCCCeEEEEeCCCCeEE
Confidence            666665555667778888888763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.35  E-value=0.33  Score=40.40  Aligned_cols=113  Identities=12%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEc--CCCCeEeeeecCCCcEEEECC------
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFN--KAGTQLLGLRRRLPPVLYNTR------  152 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~v~v~d~~------  152 (224)
                      ..-+.-+. -++..++-+....+.|||.+.+....... ...+.|..+.|.  |+++.+++.+....|.+|.-.      
T Consensus        32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444444 34444555555679999999775322222 457889999985  678999988889999988532      


Q ss_pred             ---CCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        153 ---SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       153 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                         +..++..+.-.+. +.-.+...+|.+ +|.+++..  +..+.|+|-.
T Consensus       111 ~~p~w~~i~~i~i~~~-T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSH-TPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecC-CCCCccceeEec-CCeEEEEe--CCEEEEECCC
Confidence               1233333311110 111233456665 56655543  4578888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.32  E-value=0.28  Score=36.32  Aligned_cols=186  Identities=16%  Similarity=0.203  Sum_probs=102.4

Q ss_pred             EEEEeCCCc-EEEEeCCCCceeeEE-eccC--CeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCc-ccceeeccCC
Q psy11351         10 LRVIGNDDH-VISHDMASGDPIDFY-LHER--PVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSR-EEATELAVNS   79 (224)
Q Consensus        10 l~~~~~dg~-i~iwd~~~~~~~~~~-~~~~--~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~-~~~~~~~~~~   79 (224)
                      ++.+-.-|+ ..++|.++.+...+. ..++  ---.=.|+|+| .+|...-.|     |.|-|||.+.+ +.+..+..|.
T Consensus        83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G  161 (366)
T COG3490          83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG  161 (366)
T ss_pred             EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCC
Confidence            444445554 468888776544333 1000  01112589999 566654333     78999999854 3456677777


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEE--------------------EEecCCCceeeEee----cCCCceeEEEEcCCCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIA--------------------LYDTRKPKEVLMQY----GSCESCMSIRFNKAGT  135 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~--------------------i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~  135 (224)
                      -.-..+.+.+ ++++++.+.  |.|.                    +.|..+++.+.+..    .+.-.+..++..+||.
T Consensus       162 iGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt  238 (366)
T COG3490         162 IGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT  238 (366)
T ss_pred             cCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc
Confidence            6778888999 888888763  2232                    23333332221111    1344677788888887


Q ss_pred             eEeeeecCCC-----cEEEECCCCCcceeccc--------CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        136 QLLGLRRRLP-----PVLYNTRSSSPVAQFDH--------EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       136 ~l~~~~~d~~-----v~v~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .++.+-..|.     ..+=-...++++.-+..        ...+-+++     .+-.++-..+|.-..+...+||..+|.
T Consensus       239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA-----~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA-----ANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee-----ecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            7665533332     11111233454444421        12233333     332244445565566788899999998


Q ss_pred             eE
Q psy11351        203 IY  204 (224)
Q Consensus       203 ~~  204 (224)
                      ..
T Consensus       314 vv  315 (366)
T COG3490         314 VV  315 (366)
T ss_pred             EE
Confidence            75

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.25  E-value=0.024  Score=42.90  Aligned_cols=60  Identities=13%  Similarity=0.273  Sum_probs=45.7

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEE-ecCCCEEEEEecCCcccceeecc
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFAS-ACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      .|.++|+.+++.+..+.-..++.++..+.+...+|++ ...++.+.+||..+++.++.++.
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            4888899999999888666678899999887556654 45689999999999998888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2247|consensus

Probab=96.23  E-value=0.00047  Score=53.74  Aligned_cols=127  Identities=15%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcC
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP   89 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~   89 (224)
                      ++.+..+-.+..||-.. +.+....-++...+++|..+++..++.+-..+.+.+||+.+....+.-.+....-.-..|++
T Consensus        49 lavaca~tiv~~YD~ag-q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK  127 (615)
T KOG2247|consen   49 LAVACANTIVIYYDKAG-QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK  127 (615)
T ss_pred             eehhhhhhHHHhhhhhc-ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc
Confidence            55555666666776442 33333345667788999999888888888999999999986542211111122222367888


Q ss_pred             CCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEe
Q psy11351         90 VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        90 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (224)
                       +...++.+...|.+.+++..+.+.......|...++++++.+.+..+.
T Consensus       128 -g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  128 -GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             -CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence             888888888999999999988766555556888999999998765443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.18  E-value=0.14  Score=42.39  Aligned_cols=95  Identities=15%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             EEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEc--CCCCcEEEEecCCCEEEEEecC-----Cc----ccceee--c
Q psy11351         12 VIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVD--PSQDAIFASACDDGRVLLFDTR-----SR----EEATEL--A   76 (224)
Q Consensus        12 ~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~-----~~----~~~~~~--~   76 (224)
                      .-+...++.|||...+......  ...+.|.+++|.  |++ +.+++.+....|.+|--.     ..    .+++.+  .
T Consensus        46 V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~  124 (631)
T PF12234_consen   46 VDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS  124 (631)
T ss_pred             EECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence            3333457899999987744332  458899999996  677 677777788899988542     11    122222  3


Q ss_pred             cCC-cCeEEEEEcCCCCCeEEEecCCCcEEEEecC
Q psy11351         77 VNS-GPFHAVMFNPVEARLVATANSKDGIALYDTR  110 (224)
Q Consensus        77 ~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~  110 (224)
                      .+. .+|.+..|.+ ++.+++.+  +..+.|+|-.
T Consensus       125 ~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  125 SHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cCCCCCccceeEec-CCeEEEEe--CCEEEEECCC
Confidence            333 5789999999 77666554  3467887743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630|consensus

Probab=96.04  E-value=0.044  Score=47.60  Aligned_cols=130  Identities=12%  Similarity=0.033  Sum_probs=87.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCce--------ee----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec
Q psy11351          9 VLRVIGNDDHVISHDMASGDP--------ID----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA   76 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~--------~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   76 (224)
                      .++..+++-.|..||+++-..        +.    .+....-..++.|+|.-+...+....|+.|++..+........-.
T Consensus       116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~  195 (1405)
T KOG3630|consen  116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF  195 (1405)
T ss_pred             EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence            344445555788899865321        11    012345567888998876778888899999988776544322222


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec----CCCceeEEEEcCCCCeEeee
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG----SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~  140 (224)
                      .-....++++|+| .+..++.|-..|++.-|...-. ....+.+    ....|.+|.|-....++++-
T Consensus       196 p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  196 PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CcccceeeEEecc-ccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            2345689999999 9999999999999988875532 2222221    24789999998877777663

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.04  E-value=0.45  Score=35.98  Aligned_cols=123  Identities=12%  Similarity=0.077  Sum_probs=61.3

Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC-CCCC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT-RSSS  155 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~-~~~~  155 (224)
                      .-.+.+..+.-++ ++.+++++.......-||--...-..........|..|.|.|++...+.+ ..+.++.=+. ...+
T Consensus       142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            3346788888888 88999998777667778754322222333356889999999998776654 6776776662 1111


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .-..-..+.......+..++|.+ ++...++|+. |.+ +.....|+-+
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l-~~S~DgGktW  265 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTL-LVSTDGGKTW  265 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-E-EEESSTTSS-
T ss_pred             ccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccE-EEeCCCCccc
Confidence            11110011223444455678887 4666666654 433 3455556554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.94  E-value=0.3  Score=39.16  Aligned_cols=139  Identities=19%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCC-------CcEEEEecCCCEEEEEecCCcc-cceee--cc-
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQ-------DAIFASACDDGRVLLFDTRSRE-EATEL--AV-   77 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~l~s~~~d~~i~iwd~~~~~-~~~~~--~~-   77 (224)
                      ++..|.....+.-.|++.|+.+....-...+ -+.|.|..       ++.|+ |-.+..|.-.|.+-.. .+...  +. 
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhc
Confidence            3445666667888889999998888433344 57777743       13444 4445666666765332 22111  10 


Q ss_pred             -CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         78 -NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        78 -~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                       ......+..- - ...+++.++..|-|++||.-.-.....+.+....|..+..+.+|+++++.+. ..+.+-|++
T Consensus       560 ~tKn~Fss~~t-T-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         560 KTKNKFSSGMT-T-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ccccccccccc-c-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence             1112223222 2 4578999999999999996544444455567788999999999998887664 446677764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.85  E-value=0.53  Score=35.31  Aligned_cols=202  Identities=8%  Similarity=-0.029  Sum_probs=111.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCC------CCc-eeeEEe------ccCCeeEEEEcCCC-----------CcEEEEecC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMA------SGD-PIDFYL------HERPVYGLSVDPSQ-----------DAIFASACD   57 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~------~~~-~~~~~~------~~~~v~~~~~~~~~-----------~~~l~s~~~   57 (224)
                      |....+.+-++....+...+||.+      ..+ .+..+.      .....+.+.|+...           ...++.+++
T Consensus        29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE  108 (336)
T TIGR03118        29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE  108 (336)
T ss_pred             EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence            344455566666677889999986      122 222221      23567888887432           124677899


Q ss_pred             CCEEEEEecCCccc-----ceeec-cCCcCe-EEEEEc--CCCCCeEEEecCCCcEEEEecCCCceee--EeecC-----
Q psy11351         58 DGRVLLFDTRSREE-----ATELA-VNSGPF-HAVMFN--PVEARLVATANSKDGIALYDTRKPKEVL--MQYGS-----  121 (224)
Q Consensus        58 d~~i~iwd~~~~~~-----~~~~~-~~~~~i-~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~-----  121 (224)
                      ||+|.-|...-+..     ...+. ...+.+ ..+++.  .....+.++--..++|.+||-.-.+...  .+...     
T Consensus       109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag  188 (336)
T TIGR03118       109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG  188 (336)
T ss_pred             CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence            99999998533221     11221 111222 344444  3123444444567889999865332111  01100     


Q ss_pred             ---------CC--ceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcc---cceeeeEEEEeCCCCeEEEEc
Q psy11351        122 ---------CE--SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYY---NSCTMKSCCFAGTQDEYVVSG  187 (224)
Q Consensus       122 ---------~~--~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~  187 (224)
                               .+  .|+-..-.++++.=+.+..-|.|-+||+. ++.++++...+..   ..++..+..|-.-.+.+|+--
T Consensus       189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGN  267 (336)
T TIGR03118       189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGN  267 (336)
T ss_pred             CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEee
Confidence                     00  11111112222222334445679999975 7777777544443   445555555655567778877


Q ss_pred             CCCCeEEEEeCCCCCeE
Q psy11351        188 SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       188 ~~d~~v~iw~~~~~~~~  204 (224)
                      -.||+|..||..+++..
T Consensus       268 FGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       268 FGDGTINAYDPQSGAQL  284 (336)
T ss_pred             cCCceeEEecCCCCcee
Confidence            78999999999888653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.81  E-value=0.72  Score=36.58  Aligned_cols=143  Identities=6%  Similarity=0.009  Sum_probs=84.7

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCce-----eeEEeccCCeeEEEEcC---C-CCcEEEEecCCCEEEEEecCCcc------
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDP-----IDFYLHERPVYGLSVDP---S-QDAIFASACDDGRVLLFDTRSRE------   70 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~---~-~~~~l~s~~~d~~i~iwd~~~~~------   70 (224)
                      ....++.||..|.+|||+...++.     +....-..+|..+..-+   . ....||. =.-+.+.+|.+....      
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            345899999999999999965442     22225678999887642   2 2234444 345788888873221      


Q ss_pred             ---cceeeccCC--cCeEEEEEcCCC----CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         71 ---EATELAVNS--GPFHAVMFNPVE----ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        71 ---~~~~~~~~~--~~i~~~~~~~~~----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                         .+..+..|.  .....++.-|.+    ..++..=+-||.+.+|+-+..-- ..+....--...+.|.+....+++++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-~~~lp~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-SRFLPDFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-EEEcCCCCCCcCeEEeecCCEEEEec
Confidence               112222232  223344433322    36778889999999999775421 22222222223467777777777777


Q ss_pred             cCCCcEEEE
Q psy11351        142 RRLPPVLYN  150 (224)
Q Consensus       142 ~d~~v~v~d  150 (224)
                      .+..+..|.
T Consensus       194 ss~~l~~Yk  202 (418)
T PF14727_consen  194 SSWTLECYK  202 (418)
T ss_pred             CceeEEEec
Confidence            766666664

>KOG4460|consensus

Probab=95.73  E-value=0.61  Score=37.61  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=22.5

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCEEEEEecC
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGRVLLFDTR   67 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~   67 (224)
                      -.|..+..++.| ..++-.+.+|.+.++-.+
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPK  133 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchh
Confidence            457778889998 788888888887766543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.72  E-value=0.73  Score=36.00  Aligned_cols=136  Identities=13%  Similarity=0.169  Sum_probs=72.6

Q ss_pred             CCCCCcceEEEEEe-----------CCC-cEEEEeCCC--Cce--eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEE
Q psy11351          1 MASGDPIKVLRVIG-----------NDD-HVISHDMAS--GDP--IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLL   63 (224)
Q Consensus         1 ~a~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i   63 (224)
                      ||.+..|+++++-.           ..+ .|.+++-.+  ++.  ...+ ..-...+.+++.+++  +++ ++.....++
T Consensus        19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~~~i~~~   95 (367)
T TIGR02604        19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATPPDILFL   95 (367)
T ss_pred             eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eCCCeEEEE
Confidence            56677788776642           223 677776543  332  2333 334456889998876  444 344433344


Q ss_pred             EecCCc-----cc---ceeecc----CCcCeEEEEEcCCCCCeEEEecCC-------------------CcEEEEecCCC
Q psy11351         64 FDTRSR-----EE---ATELAV----NSGPFHAVMFNPVEARLVATANSK-------------------DGIALYDTRKP  112 (224)
Q Consensus        64 wd~~~~-----~~---~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d-------------------g~v~i~d~~~~  112 (224)
                      .|....     +.   +..+..    +......++|.| ++.+.++-+..                   |.+.-+|....
T Consensus        96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~  174 (367)
T TIGR02604        96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG  174 (367)
T ss_pred             eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence            454321     11   111222    134477899999 77666654421                   33444555443


Q ss_pred             ceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351        113 KEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      + ...+...-.....++|+|+|+++++-.
T Consensus       175 ~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       175 K-LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             e-EEEEecCcCCCccceECCCCCEEEEcc
Confidence            2 222222223456899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377|consensus

Probab=95.71  E-value=0.37  Score=38.10  Aligned_cols=94  Identities=13%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCC--ceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKP--KEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      +.+-|.. .++.+++. ..|.+.=|-+...  ..+..+. ..+++|.++.||+|.+.+++-..++.|.+++....+....
T Consensus        26 ngvFfDD-aNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDD-ANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeecc-CcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            4455554 33333332 3344455544422  2222222 4667999999999999999999999999999865555555


Q ss_pred             cccCCcccceeeeEEEEeC
Q psy11351        160 FDHEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~  178 (224)
                      ..+...+....+...+|+.
T Consensus       104 ~~~~ck~k~~~IlGF~W~~  122 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTS  122 (657)
T ss_pred             HHHHhccCcceeEEEEEec
Confidence            4444344444455566664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.70  E-value=0.64  Score=35.17  Aligned_cols=155  Identities=12%  Similarity=0.051  Sum_probs=76.5

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC-C
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK-P  112 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~  112 (224)
                      +-.+.+..+.-++++ .+++++.......-||--...-...-+.-...|..|.|.| ++.+.+.+ ..|.++.=+... .
T Consensus       142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence            345778888889998 7888887766667787543221111223456899999999 77776655 888888876221 1


Q ss_pred             ceeeE-ee---cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        113 KEVLM-QY---GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       113 ~~~~~-~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      +.... +.   .....+..++|.+++...++++ .+. .+.....|+.-+.......+. ..+..+.|.+ +.+-++.| 
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~-~n~~~i~f~~-~~~gf~lG-  293 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVP-SNLYRIVFVN-PDKGFVLG-  293 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSS-S---EEEEEE-TTEEEEE--
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCC-CceEEEEEcC-CCceEEEC-
Confidence            11111 01   1233478999999877777665 443 344555565544432111111 1233455554 35555554 


Q ss_pred             CCCeEEEE
Q psy11351        189 DDFVLYMW  196 (224)
Q Consensus       189 ~d~~v~iw  196 (224)
                      .+|.|.-|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            57776544

>PHA02790 Kelch-like protein; Provisional

Probab=95.64  E-value=0.5  Score=38.38  Aligned_cols=100  Identities=12%  Similarity=0.008  Sum_probs=51.1

Q ss_pred             cceEEEEEeCC--CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCC---EEEEEecCCcccce--eec
Q psy11351          6 PIKVLRVIGND--DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDG---RVLLFDTRSREEAT--ELA   76 (224)
Q Consensus         6 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~--~~~   76 (224)
                      ++.+.+.|+.+  .++..||..+++....-  .....-.+++.. ++ ++.+.|+.++   .+..||.++++-..  .+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            35666777754  35778887665443222  111111122222 34 6777777653   46778887654221  111


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      ........+.+   ++.+.+.|   |.+..||.++.+
T Consensus       396 ~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~~~  426 (480)
T PHA02790        396 YPHYKSCALVF---GRRLFLVG---RNAEFYCESSNT  426 (480)
T ss_pred             CccccceEEEE---CCEEEEEC---CceEEecCCCCc
Confidence            11111122222   55677776   357789887653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.60  E-value=0.44  Score=37.66  Aligned_cols=85  Identities=18%  Similarity=0.087  Sum_probs=58.3

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC-eEEEEEcCCCC-----------------CeE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP-FHAVMFNPVEA-----------------RLV   95 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~-----------------~~l   95 (224)
                      .....+.++..+|.+ ++.++...=|.|.++|+.++..++.+++..+. +.-+.......                 .++
T Consensus       305 D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  305 DSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             cCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            345678999999998 78888888899999999999888877765542 11111111011                 133


Q ss_pred             EEecCCCcEEEEecCCCceeeEee
Q psy11351         96 ATANSKDGIALYDTRKPKEVLMQY  119 (224)
Q Consensus        96 ~~~~~dg~v~i~d~~~~~~~~~~~  119 (224)
                      +-+-.-|.|.||.++.+..+..+.
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEE
Confidence            445677888899988876655443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.59  E-value=1.3  Score=37.89  Aligned_cols=108  Identities=18%  Similarity=0.218  Sum_probs=67.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCcee--------------------eEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPI--------------------DFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLF   64 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~--------------------~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw   64 (224)
                      +.|+.+. |+.+.+||-......                    ...   .-.-.|..+.++|+| .+++..|..|...+.
T Consensus        34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g-~~lal~G~~~v~V~~  111 (717)
T PF10168_consen   34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTG-SLLALVGPRGVVVLE  111 (717)
T ss_pred             eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCC-CEEEEEcCCcEEEEE
Confidence            4555554 688999986543211                    111   123468889999999 788887776555443


Q ss_pred             ecCC---------ccc--c-eee--------ccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCceeeE
Q psy11351         65 DTRS---------REE--A-TEL--------AVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPKEVLM  117 (224)
Q Consensus        65 d~~~---------~~~--~-~~~--------~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~  117 (224)
                      =.+.         ++.  . +++        ......|..+.|+|..  +..|+.=+.|+.+++||+...+.+..
T Consensus       112 LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~  186 (717)
T PF10168_consen  112 LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQ  186 (717)
T ss_pred             eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeE
Confidence            3221         111  0 011        1334578999999942  57888888999999999986554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.57  E-value=0.47  Score=40.40  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=50.6

Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCC----------Cce--eeEee---------cCCCceeEEEEcCC---CC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRK----------PKE--VLMQY---------GSCESCMSIRFNKA---GT  135 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~----------~~~--~~~~~---------~~~~~v~~~~~~~~---~~  135 (224)
                      -.|..+.++| ++.+++..+..|.+ |..+..          ++.  .....         .....|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3688999999 88888888776544 433321          111  11111         24457899999997   47


Q ss_pred             eEeeeecCCCcEEEECCCC
Q psy11351        136 QLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus       136 ~l~~~~~d~~v~v~d~~~~  154 (224)
                      .|++-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8999999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.54  E-value=0.47  Score=39.99  Aligned_cols=102  Identities=14%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCC-------C-------------ceeeEEeccCCeeEEEEc--CCCCcEEEEecCCCEEEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMAS-------G-------------DPIDFYLHERPVYGLSVD--PSQDAIFASACDDGRVLLF   64 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iw   64 (224)
                      .+.|+.+.+||.|.+|.+++       .             ++...+.....+++++++  ... +++|+++....|.||
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTVF  192 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEEE
Confidence            46899999999999997521       0             011122456689999998  665 788888888888888


Q ss_pred             ecCCc--cc-ceeeccCCcCeEEEEEcCCC--CC---eEEEecCCCcEEEEec
Q psy11351         65 DTRSR--EE-ATELAVNSGPFHAVMFNPVE--AR---LVATANSKDGIALYDT  109 (224)
Q Consensus        65 d~~~~--~~-~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~v~i~d~  109 (224)
                      -....  +. ...-..+...|.+|+|-+.+  +.   .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            66542  11 11111356689999998743  22   7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.53  E-value=0.68  Score=37.30  Aligned_cols=140  Identities=12%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             EEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCC------CCeEEEecCCCcEEEEecCCCceeeEeecCCCc
Q psy11351         51 IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVE------ARLVATANSKDGIALYDTRKPKEVLMQYGSCES  124 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  124 (224)
                      ++..|+.-..++-.|++.|+.+..+..|...  -+.|.|..      ...-+.|-.+..|--.|.|...........+..
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence            3445666667777888999988888877664  56777731      122234445555555576644322233333334


Q ss_pred             eeEEEEcC----CCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        125 CMSIRFNK----AGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       125 v~~~~~~~----~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ++.-.|+.    ...++++++..|.|++||.-.-+....+ .....+..+..+.      +|.++++.. ...+.+-|++
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta------~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA------NGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec------CCcEEEEee-cceEEEEecc
Confidence            44444443    3569999999999999996533332233 3344555555544      677655443 3456666654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.51  E-value=0.55  Score=38.38  Aligned_cols=151  Identities=17%  Similarity=0.243  Sum_probs=81.9

Q ss_pred             CCeeEEEEcCCCCcEEEEec--CCCEEEEEecCCcccceeeccCCcCeEEEEEcCC----CCCeEEEecCCCcEEEEecC
Q psy11351         37 RPVYGLSVDPSQDAIFASAC--DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPV----EARLVATANSKDGIALYDTR  110 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~v~i~d~~  110 (224)
                      .++..++|.. |.+.+++.-  .+|.+++=|   .+.+..|    .-|..+.|.|-    ...+||. .....|.+|.+.
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEE-eccceEEEEEec
Confidence            5788888874 435555542  222222211   1112222    34889999884    1245554 467789999886


Q ss_pred             C-----CceeeEeec-C--CCc--eeEEEEcCCCCeEeeeecCCCcEEEECCCCC--cceecccCCcccceeeeEEEEeC
Q psy11351        111 K-----PKEVLMQYG-S--CES--CMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS--PVAQFDHEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       111 ~-----~~~~~~~~~-~--~~~--v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  178 (224)
                      .     .+.+..... .  .-+  ...+.|+|....|++-..+..-.+++++...  ....+...+.+.     +.||.+
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~Ih-----CACWT~  165 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIH-----CACWTK  165 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEE-----EEEecC
Confidence            2     222222111 1  112  2457899998888877666544566665332  222234455554     478888


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      ++.+++++.+..=.-++||-...
T Consensus       166 DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecCchh
Confidence            43444444444556678885544

>KOG1900|consensus

Probab=95.44  E-value=1.3  Score=39.65  Aligned_cols=135  Identities=12%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             eCCCcEEEEeCCCCceeeEE-eccCCeeEEEEc--------CCCCcEEEEecCCCEEEEEecCCccc---c------eee
Q psy11351         14 GNDDHVISHDMASGDPIDFY-LHERPVYGLSVD--------PSQDAIFASACDDGRVLLFDTRSREE---A------TEL   75 (224)
Q Consensus        14 ~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~~~---~------~~~   75 (224)
                      +.|..+.+|+.+++.....+ +.+..|..+..-        |.=..+|+.+. --.|.++-+.-.+.   .      .++
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccceee
Confidence            56889999999986555555 556667766643        22112333333 45666665532221   1      112


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC----CC---c-e----------------eeEee-cCCCceeEEEE
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR----KP---K-E----------------VLMQY-GSCESCMSIRF  130 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~----~~---~-~----------------~~~~~-~~~~~v~~~~~  130 (224)
                      ....-.|.++.... +|+++++| .||  .+|.+.    .+   + +                +..+. .+.++|..+..
T Consensus       175 ~~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             ecCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence            22344678888666 88888887 555  444332    11   0 0                11122 35779999999


Q ss_pred             cCCCCeEeeeecCCCcEEEECCC
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ....+.+.+-+..++|.+||+..
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccC
Confidence            98889999999999999999976

>KOG4499|consensus

Probab=95.43  E-value=0.65  Score=33.48  Aligned_cols=141  Identities=10%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCC---------CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEE
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDD---------GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL  106 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i  106 (224)
                      ....++-..+|+| ++++-.-.|         |.++.|-..  ..+..+...-.--+.++|+.+...+.++-+.+-.|.-
T Consensus       108 knR~NDgkvdP~G-ryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  108 KNRLNDGKVDPDG-RYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             hcccccCccCCCC-ceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence            4566677788998 554322222         333333321  1122222222334677888733344445556666766


Q ss_pred             Ee--cCCCc-----eeeEeec----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccC-CcccceeeeEE
Q psy11351        107 YD--TRKPK-----EVLMQYG----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE-GYYNSCTMKSC  174 (224)
Q Consensus       107 ~d--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~  174 (224)
                      ||  ..++.     .+..+..    ..-..-.++...+|+..++.-..++|...|+.+|+.+.++..+ ..     +++|
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q-----itsc  259 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ-----ITSC  259 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc-----eEEE
Confidence            77  44432     1222221    1112234556667888888888889999999999999998543 33     4457


Q ss_pred             EEeCCCCeEE
Q psy11351        175 CFAGTQDEYV  184 (224)
Q Consensus       175 ~~~~~~~~~l  184 (224)
                      ||-..+-+.|
T Consensus       260 cFgGkn~d~~  269 (310)
T KOG4499|consen  260 CFGGKNLDIL  269 (310)
T ss_pred             EecCCCccEE
Confidence            8865433343

>KOG1897|consensus

Probab=95.42  E-value=1.6  Score=37.98  Aligned_cols=143  Identities=11%  Similarity=0.080  Sum_probs=80.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCC--CCc---EEEEecCCCEEEEEecCCcccc-ee--e--c
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPS--QDA---IFASACDDGRVLLFDTRSREEA-TE--L--A   76 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~--~~~---~l~s~~~d~~i~iwd~~~~~~~-~~--~--~   76 (224)
                      .++.++.++.+...++..+......  ..+..|.|++++|.  +++   +++.|.++..+.+.-.-..-.. ..  +  .
T Consensus       501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~  580 (1096)
T KOG1897|consen  501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE  580 (1096)
T ss_pred             EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence            4455555666666666655533333  45678999999975  444   8899988877766543322211 11  1  1


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC--CCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTR--KPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      .-...|--.+|-. +..+|.++..||.+.-|-+.  ++..-....  --..++.--.|+..++.-+.+..|.-..+|.-+
T Consensus       581 ~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n  659 (1096)
T KOG1897|consen  581 IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN  659 (1096)
T ss_pred             ccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence            1123455556655 57899999999998766554  332111111  123345545666655544444456656666543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.34  E-value=0.78  Score=33.81  Aligned_cols=110  Identities=9%  Similarity=0.083  Sum_probs=65.4

Q ss_pred             CeeEEEEcCCCCcEEEEe--cCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEe-cCCCce
Q psy11351         38 PVYGLSVDPSQDAIFASA--CDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYD-TRKPKE  114 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d-~~~~~~  114 (224)
                      .+.+.++++++....+..  .....+.++.  .+....... ....+..-.|++ ++...+....+....++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence            688999999994343444  2334555554  333333322 123678889999 677777766666666663 333322


Q ss_pred             -eeEeec--CCCceeEEEEcCCCCeEeeee---cCCCcEEEEC
Q psy11351        115 -VLMQYG--SCESCMSIRFNKAGTQLLGLR---RRLPPVLYNT  151 (224)
Q Consensus       115 -~~~~~~--~~~~v~~~~~~~~~~~l~~~~---~d~~v~v~d~  151 (224)
                       ......  ....|..+.+||||..++...   .++.|.+--+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence             122221  122899999999999887765   2455665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.30  E-value=0.37  Score=40.59  Aligned_cols=142  Identities=11%  Similarity=0.113  Sum_probs=89.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCce------e-eEE----------------eccCCeeEEEEcCC-CCcEEEEecCCCEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDP------I-DFY----------------LHERPVYGLSVDPS-QDAIFASACDDGRVL   62 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~------~-~~~----------------~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~   62 (224)
                      ..+++.|. .+.|.||++..-..      . ...                .....|+-+....- +...|+.|.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            44556654 67999999864221      0 000                01233555544322 236889999999999


Q ss_pred             EEecCC-------c----c---------cceeeccCCcCeEEEEEc--CCCCCeEEEecCCCcEEEEecCCCce--ee-E
Q psy11351         63 LFDTRS-------R----E---------EATELAVNSGPFHAVMFN--PVEARLVATANSKDGIALYDTRKPKE--VL-M  117 (224)
Q Consensus        63 iwd~~~-------~----~---------~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~--~~-~  117 (224)
                      +|.+++       .    +         +...+. -...+..++++  . ..+++|+++....|.||-......  .. .
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEecccccccccc
Confidence            997631       0    0         111222 23468899998  7 788999999999999886654211  11 1


Q ss_pred             eecCCCceeEEEEcCCC---C---eEeeeecCCCcEEEEC
Q psy11351        118 QYGSCESCMSIRFNKAG---T---QLLGLRRRLPPVLYNT  151 (224)
Q Consensus       118 ~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~v~v~d~  151 (224)
                      ...+...|.+|+|-++.   .   .+++++-.|.+.+|++
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            11366789999997753   2   6778888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.18  E-value=0.15  Score=36.55  Aligned_cols=62  Identities=8%  Similarity=0.050  Sum_probs=43.8

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE---------------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY---------------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      .+++|++-+.+|.+++||+.+++.+..-               .....|..+.++.+| .-+++-+ +|..+.|+..-+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccccc
Confidence            4678999999999999999988654321               234567788888777 4555544 567788876544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.17  E-value=0.9  Score=34.02  Aligned_cols=115  Identities=11%  Similarity=0.073  Sum_probs=70.8

Q ss_pred             CCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEec------CCCEEEEEecCCcccceeecc-----CCcCeE
Q psy11351         16 DDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASAC------DDGRVLLFDTRSREEATELAV-----NSGPFH   83 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-----~~~~i~   83 (224)
                      -..|.+||..+.+....- +-.+.|+++.|..+. ++++.|.      ....+..||..+... ..+..     -.+++.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence            346999999887766554 567899999998665 6777764      566788899877652 22322     246788


Q ss_pred             EEEEcCCCCC-eEEEec-C--CCcEEEEecCCCceeeE-eecCCCceeEEEEcC
Q psy11351         84 AVMFNPVEAR-LVATAN-S--KDGIALYDTRKPKEVLM-QYGSCESCMSIRFNK  132 (224)
Q Consensus        84 ~~~~~~~~~~-~l~~~~-~--dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~  132 (224)
                      .+.+...+.. +.+.|. .  +..+..||=.+...+.. .......|..+.+-|
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            8887554443 444443 2  23466776555443333 223344566665443

>KOG1916|consensus

Probab=95.00  E-value=0.034  Score=47.13  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEE-----------cCCCCcEEEEecCCCEEEEEecC-----Cccc
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSV-----------DPSQDAIFASACDDGRVLLFDTR-----SREE   71 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~s~~~d~~i~iwd~~-----~~~~   71 (224)
                      .++..+-.++++++.+.++.......+|...+.+++|           +||| +.|+.++.||.++.|.+.     ...+
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rc  274 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRC  274 (1283)
T ss_pred             ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhh
Confidence            4666777889999988876554222257766666654           7888 788888888888888653     2235


Q ss_pred             ceeeccCCc-CeEEEEEcCCCC--------CeEEEe-cCCCcEEEEecCCCcee
Q psy11351         72 ATELAVNSG-PFHAVMFNPVEA--------RLVATA-NSKDGIALYDTRKPKEV  115 (224)
Q Consensus        72 ~~~~~~~~~-~i~~~~~~~~~~--------~~l~~~-~~dg~v~i~d~~~~~~~  115 (224)
                      .+..+.|.+ +-.|.-++.+..        .+++++ ..+..+++|.....+++
T Consensus       275 lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  275 LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            566666663 322222433111        233444 34556888887666555

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.93  E-value=1.5  Score=34.80  Aligned_cols=147  Identities=10%  Similarity=-0.017  Sum_probs=70.6

Q ss_pred             ceEEEEEe--C----CCcEEEEeCCCCceeeEEe----ccCCeeEEEEcCCCCcEEEEec--------------------
Q psy11351          7 IKVLRVIG--N----DDHVISHDMASGDPIDFYL----HERPVYGLSVDPSQDAIFASAC--------------------   56 (224)
Q Consensus         7 ~~~l~~~~--~----dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~--------------------   56 (224)
                      |++++++-  .    -|-+.++|-++.+.+....    ...--+++-|.|.. +.++|..                    
T Consensus       141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~  219 (461)
T PF05694_consen  141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGK  219 (461)
T ss_dssp             --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-
T ss_pred             ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhccc
Confidence            55555542  2    2357788888777766552    23456677888877 7777753                    


Q ss_pred             CCCEEEEEecCCcccceeeccCCc--CeEEEEEcCC-CCCeEEEe-cCCCcEEEE-ecCCCc----eeeEeec-------
Q psy11351         57 DDGRVLLFDTRSREEATELAVNSG--PFHAVMFNPV-EARLVATA-NSKDGIALY-DTRKPK----EVLMQYG-------  120 (224)
Q Consensus        57 ~d~~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~-~~~~l~~~-~~dg~v~i~-d~~~~~----~~~~~~~-------  120 (224)
                      ...++.+||+.+.+.++++.--..  ....+.|..+ +..+=+++ --..+|..| ....++    .+..+..       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            347899999999998888864332  2445555431 23332222 233344333 323322    1222211       


Q ss_pred             ----------CCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCC
Q psy11351        121 ----------SCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSS  154 (224)
Q Consensus       121 ----------~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~  154 (224)
                                -..-|+.+..|.|.++|..++ ..|.++.||+...
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                      024578999999999998876 5788999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.90  E-value=0.4  Score=37.92  Aligned_cols=81  Identities=23%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCc-eeEEEE-cCC----------------CCeEee-
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES-CMSIRF-NKA----------------GTQLLG-  139 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-v~~~~~-~~~----------------~~~l~~-  139 (224)
                      ...+.+++.+| .+++.++...-|.|.++|+.++..+...++..+. +.=+.. .+.                ..+|+. 
T Consensus       307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            34688999999 7899999888899999999988665555542221 110100 000                112332 


Q ss_pred             eecCCCcEEEECCCCCcceec
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      +-..|.|.||.+++|..+..+
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEE
Confidence            456788999999988877666

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.89  E-value=1.2  Score=33.42  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=67.3

Q ss_pred             CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEec------CCCcEEEEecCCCceeeEeec-----CCCcee
Q psy11351         58 DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN------SKDGIALYDTRKPKEVLMQYG-----SCESCM  126 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~-----~~~~v~  126 (224)
                      -..|++||..+.+-...-.+-.+.|+++.|.. +.++++.|.      ....+..||..+.. ...+..     -.+++.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEE
Confidence            46799999887764443344567899999986 677777774      35568889988653 223332     246788


Q ss_pred             EEEEcC-CCC-eEeeee-c--CCCcEEEECCCCCccee--cccCCcccceeeeEE
Q psy11351        127 SIRFNK-AGT-QLLGLR-R--RLPPVLYNTRSSSPVAQ--FDHEGYYNSCTMKSC  174 (224)
Q Consensus       127 ~~~~~~-~~~-~l~~~~-~--d~~v~v~d~~~~~~~~~--~~~~~~~~~~~~~~~  174 (224)
                      .+.+.. ++. ..+.|. .  +..|..||=.+...+..  +.....+..+.+.++
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence            887743 333 343332 2  33466676544433333  122344455544444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.82  E-value=0.97  Score=32.13  Aligned_cols=48  Identities=19%  Similarity=0.342  Sum_probs=34.9

Q ss_pred             CeEEEecCCCcEEEEecCCC-ceeeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         93 RLVATANSKDGIALYDTRKP-KEVLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        93 ~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      ..|..+...+.|.+|++.+. ..+......-+.|..+.++..|+|+++-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence            44444356778999999833 2334444566899999999999999985

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.78  E-value=2.5  Score=36.69  Aligned_cols=158  Identities=11%  Similarity=0.175  Sum_probs=91.5

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-----cceeeccCC----------cCeEEEEEcCCCCCeEEEecC
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-----EATELAVNS----------GPFHAVMFNPVEARLVATANS  100 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~----------~~i~~~~~~~~~~~~l~~~~~  100 (224)
                      ..+.-+++|+|.....||.....|...|||+....     .......+.          +.-..+.|.+ +...|+.++ 
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-  222 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-  222 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-
Confidence            45788999999877899999999999999992111     111111111          2334788887 666666664 


Q ss_pred             CCcEEEEecCCCceee--EeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCC----CcceecccCCcc--cceee
Q psy11351        101 KDGIALYDTRKPKEVL--MQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSS----SPVAQFDHEGYY--NSCTM  171 (224)
Q Consensus       101 dg~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~----~~~~~~~~~~~~--~~~~~  171 (224)
                      ...+.++|+++.....  ........|..+.-+|.. .+++.-. ...|...++...    +.+..++|.-..  ..+.+
T Consensus       223 r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl  301 (765)
T PF10214_consen  223 RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRL  301 (765)
T ss_pred             CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeecccccCCCCCceEE
Confidence            4578999998765422  222355678888888862 2222222 245777777652    344444554332  22333


Q ss_pred             eEEEEeCCCCeE--EEEcCCCCeEEEEeC
Q psy11351        172 KSCCFAGTQDEY--VVSGSDDFVLYMWRV  198 (224)
Q Consensus       172 ~~~~~~~~~~~~--l~s~~~d~~v~iw~~  198 (224)
                      ..+.. . +..+  ++.......|.+|.+
T Consensus       302 ~~~~~-~-~~~~~~~lyS~~~~~v~v~~f  328 (765)
T PF10214_consen  302 SVQKV-G-DTDFVVFLYSRLNPLVYVYFF  328 (765)
T ss_pred             EEEEc-C-CCEEEEEEEcCCCCcEEEEEE
Confidence            32222 1 2222  344445667777766

These proteins are found in fungi.

>KOG2247|consensus

Probab=94.74  E-value=0.0026  Score=49.87  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE  114 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  114 (224)
                      +-.......|-|.+.+ ++.++.+..+..||-. ++...... ..+....++|..+....++.+-..+.+.+||+.+...
T Consensus        33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             hccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            3344455678888744 7777778888888854 33222222 2445677888884555666677888999999986532


Q ss_pred             eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-cCCcccc
Q psy11351        115 VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNS  168 (224)
Q Consensus       115 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~  168 (224)
                      ..--.+-...-.-+.|++.+..++.+...+.+.+++..+.+.+-..+ |..+..+
T Consensus       110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq  164 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQ  164 (615)
T ss_pred             HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeE
Confidence            11111111122226889999999999889999999988777666664 5555444

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=1  Score=31.86  Aligned_cols=103  Identities=14%  Similarity=0.202  Sum_probs=59.1

Q ss_pred             cceEEEEEeCCC--cEEEEeCCCCceeeEEecc-CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          6 PIKVLRVIGNDD--HVISHDMASGDPIDFYLHE-RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      +|.++.+.+.-|  .|++||+.+++.+....-. ..+..=-...-+.....-.-.+|.-..+|.++-+.+..+.- ++.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            456677766544  6999999998876554221 12221111112223444455678889999988887766543 2333


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      ..++-   ++.-++.++....++.-|.++.
T Consensus       134 WgLt~---d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         134 WGLTS---DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             eeeec---CCcceEeeCCceEEEecCHHHh
Confidence            44543   3344556555566777676654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.65  E-value=0.37  Score=34.61  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=46.6

Q ss_pred             CCCeEEEecCCCcEEEEecCCCceeeEe------e--------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         91 EARLVATANSKDGIALYDTRKPKEVLMQ------Y--------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        91 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~------~--------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .+.++++-+.+|.+++||+.+.+....-      .        .....|..+.++.+|.-+++-+ +|..+.|+..-+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            5677888889999999999987654432      1        2446788888998888777655 467888886543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.15  E-value=1.8  Score=32.39  Aligned_cols=155  Identities=11%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-------
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-------   73 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------   73 (224)
                      .+...+.|.+..+...-.|+=...|+.++..  ..-.....+.+.-.+ ++.++--.++.+.++.+..+..+.       
T Consensus        93 ynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i  171 (316)
T COG3204          93 YNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKI  171 (316)
T ss_pred             eCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEE
Confidence            3455566666666666666666678888776  223345567787776 788888888899888776553211       


Q ss_pred             ---eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe---ecC-------CCceeEEEEcCC-CCeEee
Q psy11351         74 ---ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ---YGS-------CESCMSIRFNKA-GTQLLG  139 (224)
Q Consensus        74 ---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~-------~~~v~~~~~~~~-~~~l~~  139 (224)
                         ...........++|.| ....|..+=+..-+.||.+.........   ..+       -..+.++.|++. +..|+.
T Consensus       172 ~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL  250 (316)
T COG3204         172 PLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL  250 (316)
T ss_pred             eccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence               1112245678999999 5555555556666777776643211111   111       234677888875 455666


Q ss_pred             eecCCCcEEEECCCCCcceec
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      +.+++.+.-.|.. |+++..+
T Consensus       251 S~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         251 SDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             ecCCceEEEEecC-CCeeeeE
Confidence            6677777777765 4434433

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.06  E-value=1  Score=29.37  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=65.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCC--------ceeeEEeccCCeeEEEEcC----CCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          8 KVLRVIGNDDHVISHDMASG--------DPIDFYLHERPVYGLSVDP----SQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      ..|+.++.-|+|.|++....        ..+..+.....|++++--+    ++...|+.|+. ..+..||+....-+.. 
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fy-   88 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFY-   88 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhh-
Confidence            36888888999999998643        3455667788888887544    23357777775 5888999987764432 


Q ss_pred             ccCCcCeEEEEEc---CCCCCeEEEecCCCcEEEEecCCC
Q psy11351         76 AVNSGPFHAVMFN---PVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        76 ~~~~~~i~~~~~~---~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      +.-...++++.+-   .....+++.| .+..|.-||..-.
T Consensus        89 ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~  127 (136)
T PF14781_consen   89 KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN  127 (136)
T ss_pred             hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence            2334557777652   2123455554 4566766665533

>PLN02153 epithiospecifier protein

Probab=94.06  E-value=2.2  Score=32.99  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             ceEEEEEeCC-------CcEEEEeCCCCceeeEEec---cC----CeeEEEEcCCCCcEEEEecCC-----CEEEEEecC
Q psy11351          7 IKVLRVIGND-------DHVISHDMASGDPIDFYLH---ER----PVYGLSVDPSQDAIFASACDD-----GRVLLFDTR   67 (224)
Q Consensus         7 ~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~---~~----~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~   67 (224)
                      +++++.|+.+       ..+.+||+.+.+.......   ..    ....+.+  ++ ++++.|+.+     ..+.+||..
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GT-KLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CC-EEEEECCCCCCCccCcEEEEECC
Confidence            4566666653       2577888877654332211   00    1112222  23 677777753     357788887


Q ss_pred             Ccccc--eeec----cCCcCeEEEEEcCCCCCeEEEecCC-----------CcEEEEecCCC
Q psy11351         68 SREEA--TELA----VNSGPFHAVMFNPVEARLVATANSK-----------DGIALYDTRKP  112 (224)
Q Consensus        68 ~~~~~--~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~v~i~d~~~~  112 (224)
                      +.+-.  ..+.    .....-.+++..  ++++++.|+.+           ..+.+||..+.
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            65422  1110    111112233332  45677777653           24678888765

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=94.04  E-value=2.8  Score=34.18  Aligned_cols=142  Identities=15%  Similarity=0.079  Sum_probs=69.6

Q ss_pred             CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC---ceeEEEEcCC
Q psy11351         57 DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE---SCMSIRFNKA  133 (224)
Q Consensus        57 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~  133 (224)
                      ..+...+.|.+ |.....+.........+...+ ++.+++...  ..+..+|+. ++......-...   .-..+...|+
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n  200 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN  200 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC
Confidence            44566666643 444443322211111155566 677776554  678888875 444333332221   1355778899


Q ss_pred             CCeEeeeec-------------CCCcEEEECCCCCcceecc---cC--------------------CcccceeeeEEEEe
Q psy11351        134 GTQLLGLRR-------------RLPPVLYNTRSSSPVAQFD---HE--------------------GYYNSCTMKSCCFA  177 (224)
Q Consensus       134 ~~~l~~~~~-------------d~~v~v~d~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~~  177 (224)
                      |++|+.+..             ...|..+| .+|+.+..+.   |-                    ....-+.+..+.+.
T Consensus       201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            998887762             11255555 5665554431   11                    11112345667788


Q ss_pred             CCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        178 GTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       178 ~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.++.+++++-.-..|...|.++++..
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~i~  306 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGKIK  306 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCcEE
Confidence            867888888887778999998888774

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.90  E-value=0.78  Score=31.62  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             CceeEEEEcCCC------CeEeeeecCCCcEEEECCC
Q psy11351        123 ESCMSIRFNKAG------TQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus       123 ~~v~~~~~~~~~------~~l~~~~~d~~v~v~d~~~  153 (224)
                      ..+..++|||.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999964      3678888999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377|consensus

Probab=93.84  E-value=2.8  Score=33.51  Aligned_cols=132  Identities=12%  Similarity=0.095  Sum_probs=78.9

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCC---ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc----eee
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASG---DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA----TEL   75 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~   75 (224)
                      ++.++.+++. ..|.+.=|-++.-   -++... ...++|.++.|++|+ +.+|.--.+++|.+++....+..    ++-
T Consensus        31 DDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~c  108 (657)
T KOG2377|consen   31 DDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQEC  108 (657)
T ss_pred             ccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence            3444444433 3445555554322   223322 456799999999998 89999999999999998544332    222


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      +.....|....|.. + .-+|.-+ +..+.+|.....+. +.....++..|.--.|.++.+.++.+
T Consensus       109 k~k~~~IlGF~W~~-s-~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  109 KTKNANILGFCWTS-S-TEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             ccCcceeEEEEEec-C-eeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            34445688999987 4 4444443 33466666543322 22333466677777777776654433

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.73  E-value=2.1  Score=31.79  Aligned_cols=149  Identities=12%  Similarity=0.056  Sum_probs=94.0

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc-ee--ec
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA-TE--LA   76 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~--~~   76 (224)
                      +|+..+|..-.++...+.|--.|..+++....- +....-..+..-|++. .-++-+.. -|.-.|.++.+.. ..  .+
T Consensus        67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~f~lp~~  144 (353)
T COG4257          67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTRFPLPLE  144 (353)
T ss_pred             cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEEeecccc
Confidence            355667777777777788888888888876654 6667778888899984 44433322 5555666555421 11  12


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .-........|.+ .+++.+++.. |.---.|..+. .+..+. ......+.|+..|+|..-++.-.++.|-..|..++
T Consensus       145 ~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         145 HADANLETAVFDP-WGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             cCCCcccceeeCC-CccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence            2334678889999 8899888853 22111122111 111222 13345577889999998888777778888887766

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.72  E-value=2.7  Score=32.92  Aligned_cols=194  Identities=11%  Similarity=0.102  Sum_probs=89.3

Q ss_pred             CCcce-EEEEEeCCC--cEEEEeCCCCceeeEEecc-CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          4 GDPIK-VLRVIGNDD--HVISHDMASGDPIDFYLHE-RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         4 ~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +++|+ +|..+..||  .+.+.|+++++...+.... .......++|++ +.++-......++-.|+++.+....+...+
T Consensus        44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~  122 (386)
T PF14583_consen   44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEVPD  122 (386)
T ss_dssp             -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred             CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence            45565 455555555  5777788998877766432 233356677887 555444445688889999887655555555


Q ss_pred             cCeEEEEEc-CCCCCeEEEec---C-------------------CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCe
Q psy11351         80 GPFHAVMFN-PVEARLVATAN---S-------------------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQ  136 (224)
Q Consensus        80 ~~i~~~~~~-~~~~~~l~~~~---~-------------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  136 (224)
                      ...-...|. +.++..++-.-   .                   ...|.-.|+.+++. ..+......+.-+.|+|....
T Consensus       123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-~~v~~~~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-KVVFEDTDWLGHVQFSPTDPT  201 (386)
T ss_dssp             TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-EEEEEESS-EEEEEEETTEEE
T ss_pred             ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-eEEEecCccccCcccCCCCCC
Confidence            555455554 22444443221   0                   11234446666543 334445667788999997665


Q ss_pred             EeeeecCCC-----cEEEECCC-CCcceec-ccCCcccceeeeEEEEeCCCCeEEE-----EcCCCCeEEEEeCCCCCe
Q psy11351        137 LLGLRRRLP-----PVLYNTRS-SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVV-----SGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       137 l~~~~~d~~-----v~v~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-----s~~~d~~v~iw~~~~~~~  203 (224)
                      +++-+..|-     -++|-+++ +.....+ .+. .  ...+..=-|.| +|..|.     .++.+..|.-+|+.+++.
T Consensus       202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~--~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-E--GESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EEEEEE-S-TTTSS-SEEEEETTS---EESS----T--TEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             EEEEeccCCcceeceEEEEEEcCCCcceeeecCC-C--CcccccccccC-CCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            555433221     26665533 2222333 221 1  12223334566 455432     244566778888888765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.69  E-value=2.7  Score=32.89  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             CCeeEEEEcCCCCcEEEEec-----------CCC-EEEEEecCC--ccc--ceeeccCCcCeEEEEEcCCCCCeEEEecC
Q psy11351         37 RPVYGLSVDPSQDAIFASAC-----------DDG-RVLLFDTRS--REE--ATELAVNSGPFHAVMFNPVEARLVATANS  100 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~-----------~d~-~i~iwd~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  100 (224)
                      .....++|.++| +++++-.           ..+ .|.+++-.+  ++.  ...+.........+++.+ ++ ++++ ..
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CC
Confidence            456788999998 6666542           223 777776432  221  223322233457888888 66 4444 34


Q ss_pred             CCcEEEEecCCC-----c--eeeEeec-----CCCceeEEEEcCCCCeEeeee
Q psy11351        101 KDGIALYDTRKP-----K--EVLMQYG-----SCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus       101 dg~v~i~d~~~~-----~--~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      ....++.|....     +  .+..-..     +......++|.|||.+.++-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            433334354321     1  1111111     124467899999998665543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.58  E-value=2.7  Score=32.48  Aligned_cols=153  Identities=12%  Similarity=0.049  Sum_probs=79.8

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-ccceee-ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-EEATEL-AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                      ...+.++.+.|++ .+++++. .|.+..- .+.+ +....+ ..-...++++.+.+ ++..++.+ ..|.+.+=....+.
T Consensus       172 ~g~~~~i~~~~~g-~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCC-eEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCC
Confidence            4578899999987 5655554 5665432 1122 211112 23345789999999 77777766 45665432233332


Q ss_pred             eeeEeec----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        114 EVLMQYG----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       114 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      .-.....    ....+..+.+.|++..+++ +.+|.+. .....++.-........+. -.+..+.|.. ++..++ .+.
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~G~  321 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVP-SNFYKIVFLD-PEKGFV-LGQ  321 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCC-cceEEEEEeC-CCceEE-ECC
Confidence            2111111    2245788899987775554 4566443 4445454433332111121 1233344443 344455 456


Q ss_pred             CCeEEEEeC
Q psy11351        190 DFVLYMWRV  198 (224)
Q Consensus       190 d~~v~iw~~  198 (224)
                      .|.|.-|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            788776653

>PRK10115 protease 2; Provisional

Probab=93.55  E-value=4.3  Score=34.78  Aligned_cols=110  Identities=11%  Similarity=0.087  Sum_probs=62.5

Q ss_pred             CeeEEEEcCCCCcEEEEe-----cCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCC-eEEEecCC-----CcEEE
Q psy11351         38 PVYGLSVDPSQDAIFASA-----CDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR-LVATANSK-----DGIAL  106 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d-----g~v~i  106 (224)
                      .+..+.++|++ ++|+.+     ++...|++.|+.+++.+...-....  ..++|.+ +++ ++++...+     ..|..
T Consensus       128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            46678899998 555543     3334688899988763322211111  4699998 555 44443322     35777


Q ss_pred             EecCCC--ceeeEeecCCCcee-EEEEcCCCCeEeeeec---CCCcEEEEC
Q psy11351        107 YDTRKP--KEVLMQYGSCESCM-SIRFNKAGTQLLGLRR---RLPPVLYNT  151 (224)
Q Consensus       107 ~d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~v~v~d~  151 (224)
                      +++.++  +....+........ ....+.++++++..+.   ++.+.+++.
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            888877  32233333223233 3334557887765443   356888884

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.47  E-value=3  Score=32.66  Aligned_cols=186  Identities=9%  Similarity=-0.062  Sum_probs=98.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEecc---CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC-cCeEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHE---RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-GPFHA   84 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~   84 (224)
                      .+..+..||.|.-.|.++++.+......   ..+..-.+..+|  .++.++.++.+..+|.++++.+....... -.+..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            4555578888998999988866433222   223333333355  47778889999999998898877776544 11111


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCC---CceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCccee
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSC---ESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~  159 (224)
                      -..-.  ...+..++.++.+.-.|..+++.........   ..+..-.. .....++.+..  ++.+.-.|..+|.....
T Consensus       148 ~~v~~--~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         148 PPVVG--DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             CcEEc--CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeee
Confidence            12212  2334444467888888877776654433211   11111000 12233444444  45566677777766655


Q ss_pred             cccCCccc--------ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        160 FDHEGYYN--------SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       160 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ......+.        .+...++-.   + ..+..++.++.+...+..+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v---~-~~~~~~~~~g~~~~l~~~~G~~  272 (370)
T COG1520         225 QKVSQTIGRTAISTTPAVDGGPVYV---D-GGVYAGSYGGKLLCLDADTGEL  272 (370)
T ss_pred             eeeecccCcccccccccccCceEEE---C-CcEEEEecCCeEEEEEcCCCce
Confidence            32111111        111111110   1 2235556667777777777766

>PLN02193 nitrile-specifier protein

Probab=93.38  E-value=3.6  Score=33.43  Aligned_cols=186  Identities=10%  Similarity=0.009  Sum_probs=87.6

Q ss_pred             ceEEEEEeCC-------CcEEEEeCCCCceeeEEe---ccC--C-eeEEEEcCCCCcEEEEecCC-----CEEEEEecCC
Q psy11351          7 IKVLRVIGND-------DHVISHDMASGDPIDFYL---HER--P-VYGLSVDPSQDAIFASACDD-----GRVLLFDTRS   68 (224)
Q Consensus         7 ~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~---~~~--~-v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~   68 (224)
                      +.+++.|+.+       ..+..||+.+.+......   ...  . -.++... .+ .+++.|+.+     ..+..||+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~-~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GS-TLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CC-EEEEECCCCCCCCCccEEEEECCC
Confidence            3455666643       247788887765432211   111  0 1112222 23 566777655     3577888877


Q ss_pred             cccce--eec--cCCcCeEEEEEcCCCCCeEEEecCCC-----cEEEEecCCCceeeEeec------CCCceeEEEEcCC
Q psy11351         69 REEAT--ELA--VNSGPFHAVMFNPVEARLVATANSKD-----GIALYDTRKPKEVLMQYG------SCESCMSIRFNKA  133 (224)
Q Consensus        69 ~~~~~--~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~  133 (224)
                      .+-..  .+.  .....-.+++..  ++.+++.|+.++     .+..||+.+.+-. ....      .... ..++. -+
T Consensus       254 ~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~-~~~~~-~~  328 (470)
T PLN02193        254 NEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGG-AGLEV-VQ  328 (470)
T ss_pred             CEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCC-cEEEE-EC
Confidence            54221  110  011111223222  456777776543     3677887765321 1110      1111 11222 24


Q ss_pred             CCeEeeeecC----CCcEEEECCCCCcceeccc-CCcccceeeeEEEEeCCCCeEEEEcCCC--------------CeEE
Q psy11351        134 GTQLLGLRRR----LPPVLYNTRSSSPVAQFDH-EGYYNSCTMKSCCFAGTQDEYVVSGSDD--------------FVLY  194 (224)
Q Consensus       134 ~~~l~~~~~d----~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------------~~v~  194 (224)
                      ++.++.++.+    ..+.+||+.+.+-...-.. ..+........+.+   ++.+++.|+..              ..+.
T Consensus       329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~  405 (470)
T PLN02193        329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGTF  405 (470)
T ss_pred             CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccEE
Confidence            5666666544    4588999887643222111 11111111111222   67788888753              2477


Q ss_pred             EEeCCCCC
Q psy11351        195 MWRVPRDD  202 (224)
Q Consensus       195 iw~~~~~~  202 (224)
                      +||+.+.+
T Consensus       406 ~~D~~t~~  413 (470)
T PLN02193        406 ALDTETLQ  413 (470)
T ss_pred             EEEcCcCE
Confidence            88887653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.30  E-value=3  Score=32.17  Aligned_cols=101  Identities=11%  Similarity=0.201  Sum_probs=54.0

Q ss_pred             CeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---ceee----ccCCcCeEEEEEcCC---CCCeEEEecCC------
Q psy11351         38 PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---ATEL----AVNSGPFHAVMFNPV---EARLVATANSK------  101 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~----~~~~~~i~~~~~~~~---~~~~l~~~~~d------  101 (224)
                      ..+.|+|.|++ .++++ ...|.|.+++ ..+..   +..+    ...+.....++++|+   ++.+.++.+..      
T Consensus         3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            45789999998 56665 5599999999 33332   2122    234557899999993   23344433321      


Q ss_pred             --CcEEEEecCCC-------ceeeEe-ec---CCCceeEEEEcCCCCeEeeee
Q psy11351        102 --DGIALYDTRKP-------KEVLMQ-YG---SCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus       102 --g~v~i~d~~~~-------~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~  141 (224)
                        ..|.-|.....       +.+... ..   ....-..|.|.|+|.+.++.+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence              12333443322       111111 11   234456799999996555544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.17  E-value=2.6  Score=31.10  Aligned_cols=141  Identities=13%  Similarity=0.068  Sum_probs=77.4

Q ss_pred             CCCCcceEEEEEe-CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEe-cCCcccc-eeec--
Q psy11351          2 ASGDPIKVLRVIG-NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFD-TRSREEA-TELA--   76 (224)
Q Consensus         2 a~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~-~~~~--   76 (224)
                      |.+..++.++... .++.-.||-...+...........+..-.|++++ ...+....+...+++. ..+++.. ..+.  
T Consensus        30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~  108 (253)
T PF10647_consen   30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWP  108 (253)
T ss_pred             EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEeccc
Confidence            3455566555444 2333333333333322222233478888999997 6666666666666663 3333321 1121  


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEec---CCCcEEEEecCCCc-e-eeEe------e-cCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATAN---SKDGIALYDTRKPK-E-VLMQ------Y-GSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~-~-~~~~------~-~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                      .....|..+.++| ++..++.-.   .++.|.+--+.... . ...+      . .....+..++|.+++.+++.+...+
T Consensus       109 ~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  109 GLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             ccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            1112799999999 666655543   35667766543211 1 1111      1 2346789999999998777765443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.96  E-value=3.9  Score=32.61  Aligned_cols=146  Identities=11%  Similarity=0.114  Sum_probs=82.6

Q ss_pred             CCCCcEEEEecCCCEEEEEecCCcccc--eee--ccCCcCeEEEEEc---CCCC-CeEEEecCCCcEEEEecCCCc----
Q psy11351         46 PSQDAIFASACDDGRVLLFDTRSREEA--TEL--AVNSGPFHAVMFN---PVEA-RLVATANSKDGIALYDTRKPK----  113 (224)
Q Consensus        46 ~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~--~~~~~~i~~~~~~---~~~~-~~l~~~~~dg~v~i~d~~~~~----  113 (224)
                      +++...+++|+..|.++||+...+...  ..+  ..-..+|..+..-   +... ..||. -.-.++.+|.+....    
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            445579999999999999998654311  111  1224567766543   2122 34444 455678888773211    


Q ss_pred             -----eeeEeecCC--CceeEEEEcCC-----CCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCC
Q psy11351        114 -----EVLMQYGSC--ESCMSIRFNKA-----GTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQD  181 (224)
Q Consensus       114 -----~~~~~~~~~--~~v~~~~~~~~-----~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (224)
                           .+.....|.  .....++.-|-     ..++.+-+.||.+.+|+-+.-.-...+.  +   .+--.|++|.+ ..
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~---~llPgPl~Y~~-~t  186 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--D---FLLPGPLCYCP-RT  186 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--C---CCCCcCeEEee-cC
Confidence                 122223332  22333444332     2577888999999999866433222221  1   11122466666 46


Q ss_pred             eEEEEcCCCCeEEEEeC
Q psy11351        182 EYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       182 ~~l~s~~~d~~v~iw~~  198 (224)
                      +.|++++.+..+.-|..
T Consensus       187 Dsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKY  203 (418)
T ss_pred             CEEEEecCceeEEEecH
Confidence            77778777878877765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.67  E-value=0.67  Score=23.04  Aligned_cols=32  Identities=16%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351         46 PSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus        46 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      |++..++++...+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            45644566666789999999988877666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1900|consensus

Probab=92.46  E-value=2.4  Score=38.16  Aligned_cols=158  Identities=13%  Similarity=0.077  Sum_probs=85.7

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE-cC-------CCCCeEEEecCCCcEE
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF-NP-------VEARLVATANSKDGIA  105 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~-~~-------~~~~~l~~~~~dg~v~  105 (224)
                      .|...-..+-+.|.=...-+  +-|..+.+|+++++.....+.+-+..|..+.. .|       .=..+|+.+ .--.|.
T Consensus        76 ~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~  152 (1311)
T KOG1900|consen   76 SNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIV  152 (1311)
T ss_pred             cCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEE
Confidence            34444445555554322333  45789999999997767777666666666543 22       112233333 223455


Q ss_pred             EEecCCCcee---------eEeecCCCceeEEEEcCCCCeEeeeecCCCcEE--EECCCC---Ccce-------------
Q psy11351        106 LYDTRKPKEV---------LMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVL--YNTRSS---SPVA-------------  158 (224)
Q Consensus       106 i~d~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v--~d~~~~---~~~~-------------  158 (224)
                      ++-+.-.+..         ..+......|.++....+|+.+++|- ||.++-  |....+   +...             
T Consensus       153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             EEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence            5543321111         11122456788999888888877765 443432  222211   1000             


Q ss_pred             -----ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        159 -----QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       159 -----~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                           .. .+..++..+.+..      .-..+.+-++.|.|.+|++...
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~------SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDN------SRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEecc------ccceeeeeccCceEEEEEccCC
Confidence                 11 1233455444433      4567888899999999999873

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.15  E-value=0.65  Score=38.40  Aligned_cols=70  Identities=11%  Similarity=0.098  Sum_probs=43.2

Q ss_pred             CCCeEEEecCCCcEEEEecCC----CceeeEee-c---------------------CCCceeEEEEcC----CCCeEeee
Q psy11351         91 EARLVATANSKDGIALYDTRK----PKEVLMQY-G---------------------SCESCMSIRFNK----AGTQLLGL  140 (224)
Q Consensus        91 ~~~~l~~~~~dg~v~i~d~~~----~~~~~~~~-~---------------------~~~~v~~~~~~~----~~~~l~~~  140 (224)
                      +...++.+..||.+...+...    +....... .                     .......++.++    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            556777778899888877664    11111110 0                     123445566666    67899999


Q ss_pred             ecCCCcEEEECCCCCcceec
Q psy11351        141 RRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~~~~  160 (224)
                      +.|+.+|+||+.+++++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999885443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1916|consensus

Probab=92.06  E-value=0.33  Score=41.60  Aligned_cols=101  Identities=13%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             CcEEEEeCC--CCceee-----EE-eccCCeeEEEEcC---CCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351         17 DHVISHDMA--SGDPID-----FY-LHERPVYGLSVDP---SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus        17 g~i~iwd~~--~~~~~~-----~~-~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      |.+.+|++.  .|+...     .. .....+.-+.|.|   +. -++..+-.++.+++..+.+... ..+.+|..++..+
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc-ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence            566788765  233211     11 2334445555554   44 5777788888998877665432 4456688877777


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      +|-. .+.+++.+                               .+|||..++.++.||.++.|.+
T Consensus       231 a~~~-~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  231 AFFA-EGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHHh-hchhhhee-------------------------------eCCCCcEEEEeecCCccceeee
Confidence            7655 32222111                               6777777777777777766654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.95  E-value=4.2  Score=30.60  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=92.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc---ceeeccCCc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE---ATELAVNSG   80 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~   80 (224)
                      .++...+.++.-++|.|+.+-+.-...   ...+--+++..+  | ++...+..|.-+.+.|+.+...   ...+.....
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpssP~lagrya~~~~  172 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG  172 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence            456777778888999999875443333   333556666666  4 6777777666777889876542   222333333


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      .-..++.+   +++...+..|+.+.+-|+.....+..+..  ....+.++..+++..+++...  .-+.+-|..+.+...
T Consensus       173 d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~  247 (370)
T COG5276         173 DTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPT  247 (370)
T ss_pred             CceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCce
Confidence            34566664   46667777999999999987765544332  334677887777666655543  336666766655444


Q ss_pred             ec
Q psy11351        159 QF  160 (224)
Q Consensus       159 ~~  160 (224)
                      .+
T Consensus       248 ~~  249 (370)
T COG5276         248 VF  249 (370)
T ss_pred             Ee
Confidence            44

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.93  E-value=0.87  Score=37.69  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=40.5

Q ss_pred             eEEEEEeCCCcEEEEeCCC----CceeeEE---e--------------------ccCCeeEEEEcC---CCCcEEEEecC
Q psy11351          8 KVLRVIGNDDHVISHDMAS----GDPIDFY---L--------------------HERPVYGLSVDP---SQDAIFASACD   57 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~----~~~~~~~---~--------------------~~~~v~~~~~~~---~~~~~l~s~~~   57 (224)
                      ..++.+..||.+.......    +......   .                    -......+++++   ++..++++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            4566667888888777664    2111110   0                    123456666665   23379999999


Q ss_pred             CCEEEEEecCCcccceee
Q psy11351         58 DGRVLLFDTRSREEATEL   75 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~~   75 (224)
                      |+++|+||+.+++++...
T Consensus       239 D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  239 DHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TSEEEEEETTTTCEEEEE
T ss_pred             CCeEEEEECCCCeEEEEe
Confidence            999999999999885443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.78  E-value=4.7  Score=30.84  Aligned_cols=103  Identities=6%  Similarity=0.010  Sum_probs=50.0

Q ss_pred             cEEEEecCC-----CEEEEEecCCcccc---eeeccCCcC--eEEEEEcCCCCCeEEEecC-----CCcEEEEecCCCce
Q psy11351         50 AIFASACDD-----GRVLLFDTRSREEA---TELAVNSGP--FHAVMFNPVEARLVATANS-----KDGIALYDTRKPKE  114 (224)
Q Consensus        50 ~~l~s~~~d-----~~i~iwd~~~~~~~---~~~~~~~~~--i~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~~~~  114 (224)
                      .+++.|+.+     ..+..+|+.+.+..   ..+.....+  -.+++..  ++.+++.|+.     ...+..||+.+.+-
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            677777754     35667777665421   122111111  1222222  4567777664     23578889876532


Q ss_pred             eeEeec--CCCceeEEEEcCCCCeEeeeecCC----CcEEEECCCCC
Q psy11351        115 VLMQYG--SCESCMSIRFNKAGTQLLGLRRRL----PPVLYNTRSSS  155 (224)
Q Consensus       115 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~----~v~v~d~~~~~  155 (224)
                       ..+..  ............+++..+.|+.++    .+.+||+.+.+
T Consensus       152 -~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       152 -FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             -eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence             11111  111111222233556666666543    25678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.77  E-value=4.5  Score=30.53  Aligned_cols=135  Identities=12%  Similarity=0.170  Sum_probs=76.0

Q ss_pred             CEEEEEecCCcccceeecc------CCcCeEEEEEcCCCC----CeE-EEecCCCcEEEEecCCCceeeEeec-------
Q psy11351         59 GRVLLFDTRSREEATELAV------NSGPFHAVMFNPVEA----RLV-ATANSKDGIALYDTRKPKEVLMQYG-------  120 (224)
Q Consensus        59 ~~i~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~~----~~l-~~~~~dg~v~i~d~~~~~~~~~~~~-------  120 (224)
                      -+|.+||+++++.++.+.-      ..+.+..+.+....+    .++ ++=...+.+.++|+.+++.......       
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            3778889988887665531      245678888876322    233 3334456899999998754333221       


Q ss_pred             ------------CCCceeEEEEcC---CCCeEeeeecCCCcEEEECCCC-----C---------cceecccC-Cccccee
Q psy11351        121 ------------SCESCMSIRFNK---AGTQLLGLRRRLPPVLYNTRSS-----S---------PVAQFDHE-GYYNSCT  170 (224)
Q Consensus       121 ------------~~~~v~~~~~~~---~~~~l~~~~~d~~v~v~d~~~~-----~---------~~~~~~~~-~~~~~~~  170 (224)
                                  ....+..++.+|   +++.|+-....+ -++|.+++.     .         .+..++.. +...   
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~---  189 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD---  189 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC---
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCc---
Confidence                        122356666665   566666655443 345544321     0         11111111 1212   


Q ss_pred             eeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        171 MKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                        .++..+ +|.++++--..+.|..|+..+
T Consensus       190 --g~~~D~-~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  190 --GMAIDP-NGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             --EEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred             --eEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence              244555 788899988999999999887

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.66  E-value=7.5  Score=32.89  Aligned_cols=164  Identities=10%  Similarity=0.074  Sum_probs=83.8

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceeecc-CCc------CeEEEEEcCCCCCeEEEecC-C--
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATELAV-NSG------PFHAVMFNPVEARLVATANS-K--  101 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~-~~~------~i~~~~~~~~~~~~l~~~~~-d--  101 (224)
                      .-.+.|-.+.|.+++ +.+++.-.+|.|.+||...+..  +..+.. +..      -|....... +..++++-+. .  
T Consensus       127 kl~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~-~~~~ll~v~~~~~~  204 (670)
T PF10395_consen  127 KLDDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN-GKDLLLTVSQLSNS  204 (670)
T ss_pred             EcccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc-CCceEEEEEEcCCC
Confidence            356789999999887 7888899999999999933221  111211 111      112221112 3345544433 2  


Q ss_pred             -CcEEEEecC-CCceeeEee---cCCCceeEEEEcC-CCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEE
Q psy11351        102 -DGIALYDTR-KPKEVLMQY---GSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCC  175 (224)
Q Consensus       102 -g~v~i~d~~-~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  175 (224)
                       -..+++.+. .........   .+........|+- +|...--  .++.+.+|++..-+...++....-+....-..+.
T Consensus       205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS  282 (670)
T PF10395_consen  205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS  282 (670)
T ss_pred             cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceE
Confidence             236777772 112222222   1222222333332 3443222  5678999999887766666433222221001122


Q ss_pred             EeCCCC-eEEEEcCCCCeEEEEeCCCCCe
Q psy11351        176 FAGTQD-EYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       176 ~~~~~~-~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.|... +.|++  .+..|++.|+.-...
T Consensus       283 l~~~s~nRvLLs--~~nkIyLld~~~~si  309 (670)
T PF10395_consen  283 LKPPSPNRVLLS--VNNKIYLLDLKFESI  309 (670)
T ss_pred             eecCCCCeEEEE--cCCEEEEEeehhhhh
Confidence            323233 44554  356899999865444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1898|consensus

Probab=91.56  E-value=9.5  Score=33.90  Aligned_cols=170  Identities=17%  Similarity=0.091  Sum_probs=90.1

Q ss_pred             cEEEEeCCCCceeeEEecc-----CCeeEEEEcCCCCc-EEEEec-----------CCCEEEEEecC-Ccccceeec--c
Q psy11351         18 HVISHDMASGDPIDFYLHE-----RPVYGLSVDPSQDA-IFASAC-----------DDGRVLLFDTR-SREEATELA--V   77 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~-~l~s~~-----------~d~~i~iwd~~-~~~~~~~~~--~   77 (224)
                      .|++.|..+++.+..+.+.     -.+..+.|+..+.. +++++.           .+|.++.|++- .++.+..+.  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            4899999988877766432     24666677765434 333332           23446666653 333222221  2


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC-C
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS-S  154 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~-~  154 (224)
                      -.+++.++  .| -...+.+| ....+++||+-..+.+....  .-...|+.+.+  .+..+++|.....+..+..+. .
T Consensus       934 ~~~~v~Ai--~~-f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen  934 IPGPVGAI--CP-FQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred             CCccceEE--ec-cCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence            23344444  46 33344444 56789999998654433222  12445566655  456777777665666554432 3


Q ss_pred             Ccceec-cc--CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        155 SPVAQF-DH--EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       155 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +.+..+ ..  +-++..     +.+ - |...++.+..=|.+.+-.+..
T Consensus      1008 n~l~~fadD~~pR~Vt~-----~~~-l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTA-----LEL-L-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CeEEEEeCCCccceeeE-----EEE-e-cCCceeeccccCcEEEEECCC
Confidence            333344 21  122222     112 1 566677777667776666543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.40  E-value=5.8  Score=31.07  Aligned_cols=146  Identities=9%  Similarity=0.037  Sum_probs=79.0

Q ss_pred             EEEEecCCCEEEEEecCCcccceeeccCC--cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC-ceeE
Q psy11351         51 IFASACDDGRVLLFDTRSREEATELAVNS--GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE-SCMS  127 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~v~~  127 (224)
                      .+..+..+|.|.-.|..+++.+.....-.  ..+..-.+.. +++ ++.++.++.+..+|.++++.......... .+..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            56666888999999998888654432221  1222222222 344 66777888899999988877666654441 1111


Q ss_pred             EEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccc-eeeeEEEEeCCCCeEEEEcCC--CCeEEEEeCCCCCe
Q psy11351        128 IRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNS-CTMKSCCFAGTQDEYVVSGSD--DFVLYMWRVPRDDI  203 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~--d~~v~iw~~~~~~~  203 (224)
                      -..-.+ ..++..+.++.+...|..+++............. ....+. .   ....+..+..  ++.+.-.|..+|+.
T Consensus       148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~---~~~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I---ASGTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-e---ecceEEEecCCCcceEEEEEccCCcE
Confidence            111112 2333333678888888888877666532211000 000011 0   2233333333  56777778877766

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.24  E-value=6.4  Score=31.28  Aligned_cols=145  Identities=8%  Similarity=-0.028  Sum_probs=0.0

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCc-eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGD-PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ++..+++.+++.+..-.-++-||-.... ..........++.+.|.+++ .+++++...+.+.--|-........+....
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg-~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~  322 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADG-GLWLLTRGGGLYVSKGTGLTEEDFDFEEAD  322 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCC-CEEEEeCCceEEEecCCCCcccccceeecc


Q ss_pred             cC-----eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe--ecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         80 GP-----FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ--YGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        80 ~~-----i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      ..     +.++.|.+ ++..+++| .+|.+..-.-.-..-....  ..-....+.+.|.++++-+++|. +|.|.-|
T Consensus       323 ~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~  396 (398)
T PLN00033        323 IKSRGFGILDVGYRS-KKEAWAAG-GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY  396 (398)
T ss_pred             cCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.12  E-value=7.6  Score=31.92  Aligned_cols=85  Identities=12%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCc---eeeEEec-cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC--cccceeecc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGD---PIDFYLH-ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS--REEATELAV   77 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~   77 (224)
                      ...+..++-+.++|.+....+....   .+..++. .....++.+..++..+++.|+.-|.=.++.+..  -+.+..+. 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence            3445678888899999988887544   2333354 667778888776534777776655544444432  23333343 


Q ss_pred             CCcCeEEEEEcC
Q psy11351         78 NSGPFHAVMFNP   89 (224)
Q Consensus        78 ~~~~i~~~~~~~   89 (224)
                      .-++|.++++-+
T Consensus       298 N~~Pi~D~~v~~  309 (504)
T PF10433_consen  298 NWGPIVDFCVVD  309 (504)
T ss_dssp             ---SEEEEEEE-
T ss_pred             CcCCccceEEec
Confidence            246788888753

...

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.85  E-value=5.8  Score=30.15  Aligned_cols=61  Identities=10%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             cceEEEEEeCCCcEEEEeCCCC-ceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASG-DPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR   67 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~   67 (224)
                      .+++|+.|.++| +.+.+.... .......+...|+++...+....+++.++....++.+++.
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~   73 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS   73 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence            336899999998 555556542 2233334567899999998773344455555569999984

Unpublished observations.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.63  E-value=6.3  Score=30.17  Aligned_cols=103  Identities=9%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             ceEEEEEeCCC-----cEEEEeCCCCcee---eEE---eccCCeeEEEEcCCCCcEEEEecC-----CCEEEEEecCCcc
Q psy11351          7 IKVLRVIGNDD-----HVISHDMASGDPI---DFY---LHERPVYGLSVDPSQDAIFASACD-----DGRVLLFDTRSRE   70 (224)
Q Consensus         7 ~~~l~~~~~dg-----~i~iwd~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~   70 (224)
                      +.+++.|+.++     .+..+|+.+.+..   ...   .....-.+++.. ++ ++.+.|+.     ...+..||+.+.+
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45666666542     4666777665531   111   111111122222 33 56666664     2468888887665


Q ss_pred             cc--eeeccCCcCeEEEEEcCCCCCeEEEecCCCc----EEEEecCCCc
Q psy11351         71 EA--TELAVNSGPFHAVMFNPVEARLVATANSKDG----IALYDTRKPK  113 (224)
Q Consensus        71 ~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~----v~i~d~~~~~  113 (224)
                      -.  ..+.... .....+..- ++.+++.|+.++.    +..||+++.+
T Consensus       151 W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence            22  1121111 111222222 5677777776543    5688887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.97  E-value=7.5  Score=30.04  Aligned_cols=119  Identities=11%  Similarity=0.084  Sum_probs=62.3

Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEE-EecCCCceeeEe-ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIAL-YDTRKPKEVLMQ-YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i-~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      ...+.++.+.| ++.+++++. .|.+.. +|-. ++.-... ......++.+.+.++++.++++ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688999999 777776664 454432 2211 1212222 2345678899999998877665 456443223444443


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      -.........+...+..+.+.| ++..+++| .+|.+. .....++.+
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~tW  292 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKTW  292 (334)
T ss_pred             cccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCCC
Confidence            3322211111222344466666 45555544 566554 345555554

>KOG1983|consensus

Probab=89.56  E-value=10  Score=34.11  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++..++++..||.+..||...++..
T Consensus       245 ~~~~~v~~h~Dgs~~fWd~s~g~~~  269 (993)
T KOG1983|consen  245 DGSHFVSYHTDGSYAFWDVSSGKLQ  269 (993)
T ss_pred             CCceEEEEEecCCEEeeecCCCcee
Confidence            6889999999999999999998664

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.32  E-value=8.4  Score=29.66  Aligned_cols=102  Identities=15%  Similarity=0.205  Sum_probs=61.3

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCE------EEEEecCCc----ccc-----eeeccCCc--------CeEEEEEcCCCCC
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGR------VLLFDTRSR----EEA-----TELAVNSG--------PFHAVMFNPVEAR   93 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~------i~iwd~~~~----~~~-----~~~~~~~~--------~i~~~~~~~~~~~   93 (224)
                      +....+.+.|++ ..+++.+.+|.      +...++...    ..+     ..+....+        -..+|++.+ ++.
T Consensus        20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~   97 (326)
T PF13449_consen   20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS   97 (326)
T ss_pred             CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence            567888998765 46666677777      655555431    101     11111111        345788855 778


Q ss_pred             eEEEecCC------CcEEEEecCCCceeeEe---------------ecCCCceeEEEEcCCCCeEeeee
Q psy11351         94 LVATANSK------DGIALYDTRKPKEVLMQ---------------YGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        94 ~l~~~~~d------g~v~i~d~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      ++++.-.+      ..|..++.. ++....+               ........+|+++|+|+.|+++.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            88777666      678888865 4332222               11345678999999999666643

>KOG1896|consensus

Probab=89.24  E-value=16  Score=33.22  Aligned_cols=138  Identities=13%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             eEEEEEe---------CCCcEEEEeCC-----CCce------eeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEe
Q psy11351          8 KVLRVIG---------NDDHVISHDMA-----SGDP------IDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFD   65 (224)
Q Consensus         8 ~~l~~~~---------~dg~i~iwd~~-----~~~~------~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd   65 (224)
                      .++++|.         .-|.+.|+|+-     .+++      ...+  +..++|..++=- +|  +|+++. ...|.+|+
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G--~l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG--HLLSSQ-GQKIIVRK 1122 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc--EEEEcc-CcEEEEEE
Confidence            3666664         25789999862     2322      2222  567788777633 34  565554 45899999


Q ss_pred             cC-CcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec---CCCceeEEEEcCCCC--eEee
Q psy11351         66 TR-SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGT--QLLG  139 (224)
Q Consensus        66 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~l~~  139 (224)
                      ++ ....+..-. -.-++.-....- -.++++.|..-..+.+.-....-....+..   ..-.++++.|--+|.  ++++
T Consensus      1123 l~r~~~ligVaF-iD~~~yv~s~~~-vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAF-IDLPLYVHSMKV-VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred             eccCCcceeeEE-eccceeEEehhh-hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence            94 333221110 111222222222 346677776666676666554322222222   334678888887766  5677


Q ss_pred             eecCCCcEEEEC
Q psy11351        140 LRRRLPPVLYNT  151 (224)
Q Consensus       140 ~~~d~~v~v~d~  151 (224)
                      +..++.|++|-.
T Consensus      1201 sDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1201 SDADRNIHVYMY 1212 (1366)
T ss_pred             EcCCCcEEEEEe
Confidence            888999988854

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.20  E-value=6.5  Score=31.58  Aligned_cols=151  Identities=11%  Similarity=0.049  Sum_probs=83.8

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceee--EE-ecc----CCee-EEEEcCCCCcEEEEecCCCEEEEE-ecCCccc----
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPID--FY-LHE----RPVY-GLSVDPSQDAIFASACDDGRVLLF-DTRSREE----   71 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-~~~----~~v~-~~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~----   71 (224)
                      .+|+.+..-+. .++.++++.+.....  .. ...    ..|+ .+.....+ .-+..++.||-|.-| |++.+..    
T Consensus       230 Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vsQWFdvr~~~~p~l~  307 (733)
T COG4590         230 PDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLVSQWFDVRRDGQPHLN  307 (733)
T ss_pred             CCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCceeeeeeeecCCCCcce
Confidence            44555444433 578888887644321  11 111    1222 12222233 677788899999877 5554332    


Q ss_pred             -ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         72 -ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        72 -~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                       ++.++-...++..+.-.. +.+-+++-+.+|++.++-....+.+. +..-...+.-+++||.+.++++-. .+.++++.
T Consensus       308 h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~  384 (733)
T COG4590         308 HIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQ  384 (733)
T ss_pred             eeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheeec-CCceEEEE
Confidence             122222223344443333 44566667778888777655443332 222223556789999999998764 45699999


Q ss_pred             CCCCCcceec
Q psy11351        151 TRSSSPVAQF  160 (224)
Q Consensus       151 ~~~~~~~~~~  160 (224)
                      +++..+.-.+
T Consensus       385 l~Nr~Peisw  394 (733)
T COG4590         385 LENRNPEISW  394 (733)
T ss_pred             ecCCCCCccH
Confidence            9876654443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.51  E-value=9  Score=28.96  Aligned_cols=115  Identities=11%  Similarity=0.063  Sum_probs=74.6

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec--cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA--VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  111 (224)
                      .-.+-+.++.++.   ++...+.++.-++|.|+.+......+.  .-.+--.++..   .+++...+..+..+.+.|+.+
T Consensus        84 ~~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          84 NARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             ehhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCC
Confidence            4456677788874   577778888899999998776433221  11132344444   567888887677788889987


Q ss_pred             CceeeEee---cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351        112 PKEVLMQY---GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus       112 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      .+.+.-.-   .....-..++.|  |++-..+..|+-+.+.|+.....
T Consensus       158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s  203 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS  203 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC
Confidence            75543221   122223455554  67777788888899999976543

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=88.51  E-value=13  Score=30.80  Aligned_cols=178  Identities=10%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             cEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .|.+.| ++.+.+..+   +-...|+++.|--+- -+++|=-.---+.+.|+.+.+..+.+-.-+-+=.+=-+||-+..+
T Consensus       305 ~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~-~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~  382 (521)
T PF09826_consen  305 NLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDR-AYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH  382 (521)
T ss_pred             EEEEEC-CCCcEeEEccccCCCceEEEEEEeCCe-EEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence            456665 444444444   456789999999876 688887776789999998765433321111111122234433334


Q ss_pred             EE-EecCC-----------CcEEEEecCCCceeeEeec-----------CCCceeEEEEcCCCCeEeeeec-------CC
Q psy11351         95 VA-TANSK-----------DGIALYDTRKPKEVLMQYG-----------SCESCMSIRFNKAGTQLLGLRR-------RL  144 (224)
Q Consensus        95 l~-~~~~d-----------g~v~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~-------d~  144 (224)
                      |+ .|-..           =+|.+||+.....+.....           -...-.++.|++..+.|+.--.       -.
T Consensus       383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~  462 (521)
T PF09826_consen  383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ  462 (521)
T ss_pred             EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence            43 33221           1377899987655544321           1112356788887777665332       12


Q ss_pred             CcEEEECCCCC---cceecccCCcc--cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        145 PPVLYNTRSSS---PVAQFDHEGYY--NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       145 ~v~v~d~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .+.++++...+   ....+.|...-  ......+..+   -++.|.+-+ ++.|+.+|+++-
T Consensus       463 g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~ly---i~d~lYtvS-~~~i~~~~l~t~  520 (521)
T PF09826_consen  463 GAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLY---IGDTLYTVS-DNGIKAYDLNTL  520 (521)
T ss_pred             eEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEE---ECCEEEEEE-CCEEEEEehHhc
Confidence            37788776322   22233444421  0111122222   244555554 567899988764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.39  E-value=7.4  Score=27.82  Aligned_cols=102  Identities=8%  Similarity=-0.023  Sum_probs=55.3

Q ss_pred             cEEEEecCC--CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeE
Q psy11351         50 AIFASACDD--GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMS  127 (224)
Q Consensus        50 ~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~  127 (224)
                      .++.+.+.-  ..|+.||+.+++.+..-.-....+..=....-+..+..-.-.+|.-..||.++.+.+..+. .++.-+.
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg  135 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG  135 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence            566666543  4799999998886544322111111111111122333334467778888988776655543 2233344


Q ss_pred             EEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351        128 IRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      ++  .|+..|..++...+++.-|..+-
T Consensus       136 Lt--~d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         136 LT--SDDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             ee--cCCcceEeeCCceEEEecCHHHh
Confidence            43  35555666665666776666543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.38  E-value=10  Score=29.36  Aligned_cols=12  Identities=25%  Similarity=0.493  Sum_probs=8.9

Q ss_pred             CEEEEEecCCcc
Q psy11351         59 GRVLLFDTRSRE   70 (224)
Q Consensus        59 ~~i~iwd~~~~~   70 (224)
                      ..+.+||..+++
T Consensus       168 ~~v~~YDp~t~~  179 (346)
T TIGR03547       168 KNVLSYDPSTNQ  179 (346)
T ss_pred             ceEEEEECCCCc
Confidence            468889987764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.37  E-value=2  Score=21.24  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=24.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSV   44 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~   44 (224)
                      .++++...+++|.++|..+++.+..+.-......+.|
T Consensus         5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         5 KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            3455555688999999988887776633333344443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.31  E-value=4.9  Score=27.66  Aligned_cols=31  Identities=10%  Similarity=0.106  Sum_probs=23.7

Q ss_pred             eeeEEEEeCC-----CCeEEEEcCCCCeEEEEeCCC
Q psy11351        170 TMKSCCFAGT-----QDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       170 ~~~~~~~~~~-----~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .+..++|||.     ...+|++.+.++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3555777772     346789999999999998775

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460|consensus

Probab=88.18  E-value=13  Score=30.50  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTR  110 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~  110 (224)
                      .|..+..++ .|..++-.+.+|.+.++-.+
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKGLMVMELPK  133 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCeeEEEEchh
Confidence            466777788 77777777777776655433

>PF01011 PQQ: PQQ enzyme repeat family

Probab=87.62  E-value=1.8  Score=21.15  Aligned_cols=27  Identities=11%  Similarity=0.150  Sum_probs=22.2

Q ss_pred             EEEEecCCCEEEEEecCCcccceeecc
Q psy11351         51 IFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      .++.++.+|.+.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            455669999999999999998877753

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.47  E-value=11  Score=28.70  Aligned_cols=71  Identities=10%  Similarity=0.056  Sum_probs=49.0

Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecC------CCceee-Eeec-----CCCceeEEEEcCCCCe------------
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTR------KPKEVL-MQYG-----SCESCMSIRFNKAGTQ------------  136 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~------~~~~~~-~~~~-----~~~~v~~~~~~~~~~~------------  136 (224)
                      .-..|+++| .+.+.++....+...+||..      ..+.+. .+..     .....+.+.|+....+            
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            357899999 77888888888899999986      222222 2221     2346788888754433            


Q ss_pred             EeeeecCCCcEEEECC
Q psy11351        137 LLGLRRRLPPVLYNTR  152 (224)
Q Consensus       137 l~~~~~d~~v~v~d~~  152 (224)
                      ++.+++||+|.=|...
T Consensus       103 Fif~tEdGTisaW~p~  118 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPA  118 (336)
T ss_pred             EEEEeCCceEEeecCc
Confidence            5667889999999853

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.14  E-value=9.9  Score=27.92  Aligned_cols=136  Identities=10%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             EEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCC---CEEEEEecCCc--ccc-----eeeccCCcCeEEEEEc
Q psy11351         20 ISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDD---GRVLLFDTRSR--EEA-----TELAVNSGPFHAVMFN   88 (224)
Q Consensus        20 ~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~--~~~-----~~~~~~~~~i~~~~~~   88 (224)
                      .+||+.+++..... ...-.+.+-.+.++| +++.+|+..   ..+++++....  .+.     ..+ ....+-.....-
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~L  126 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATTL  126 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceEC
Confidence            47777776654332 233344444577888 788887652   45777776441  111     011 112334445555


Q ss_pred             CCCCCeEEEecCCC-cEEEEecCCC-ceeeE--eec------CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         89 PVEARLVATANSKD-GIALYDTRKP-KEVLM--QYG------SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        89 ~~~~~~l~~~~~dg-~v~i~d~~~~-~~~~~--~~~------~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      | +++.++.|+... ....|.-+.. .....  +..      ...--.-+...|+|+.++.+..+  -.+||..+.+.+.
T Consensus       127 ~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~  203 (243)
T PF07250_consen  127 P-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR  203 (243)
T ss_pred             C-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence            6 778888777664 3445554221 11111  111      11112346678999999888765  4678988887666


Q ss_pred             ec
Q psy11351        159 QF  160 (224)
Q Consensus       159 ~~  160 (224)
                      .+
T Consensus       204 ~l  205 (243)
T PF07250_consen  204 TL  205 (243)
T ss_pred             eC
Confidence            65

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00564 PQQ beta-propeller repeat

Probab=87.13  E-value=1.9  Score=20.02  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=19.9

Q ss_pred             EEEEecCCCEEEEEecCCccccee
Q psy11351         51 IFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      .++.++.++.+..+|.++++.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            677788899999999998886654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.84  E-value=9.3  Score=27.33  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             EEEEecCCCEEEEEecCCc--ccceeeccCCcCeEEEEEcCCCCCeEEEecCC---C---cEEEE---ecC-CC-ceee-
Q psy11351         51 IFASACDDGRVLLFDTRSR--EEATELAVNSGPFHAVMFNPVEARLVATANSK---D---GIALY---DTR-KP-KEVL-  116 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g---~v~i~---d~~-~~-~~~~-  116 (224)
                      .|+.+...+.|.+|++...  +....+.. -+.|..+.++. .|++++|--.+   .   .+++|   +.. .. +... 
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            3433355688999999833  34455544 37899999999 88999886332   2   45654   222 11 1111 


Q ss_pred             Eee---------------------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351        117 MQY---------------------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus       117 ~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .+.                     .-..++.+++..|-..-|++|+ ++++.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence            000                     1344667888888655555555 45688997754

>PLN02193 nitrile-specifier protein

Probab=86.64  E-value=16  Score=29.81  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             eEEEEEeCC-----CcEEEEeCCCCceeeEEe-----ccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcccc
Q psy11351          8 KVLRVIGND-----DHVISHDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSREEA   72 (224)
Q Consensus         8 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~   72 (224)
                      .+++.|+.+     ..+..+|+.+.+......     ....-.++... ++ ++++.|+.+     ..+..||+.+.+-.
T Consensus       230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EE-NVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CC-EEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            455566544     357788887765433211     11111122222 23 677777654     34667887765421


Q ss_pred             ee-----eccCCcCeEEEEEcCCCCCeEEEecCC----CcEEEEecCCCc
Q psy11351         73 TE-----LAVNSGPFHAVMFNPVEARLVATANSK----DGIALYDTRKPK  113 (224)
Q Consensus        73 ~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~  113 (224)
                      ..     ....... ..++..  ++++++.++.+    ..+.+||+.+.+
T Consensus       308 ~~~~~~~~~~~R~~-~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        308 HCSTPGDSFSIRGG-AGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             eCCCCCCCCCCCCC-cEEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence            11     0011111 122222  45666666655    458899998764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.55  E-value=2.6  Score=20.58  Aligned_cols=30  Identities=10%  Similarity=0.148  Sum_probs=20.4

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCC--CEEEEE
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDD--GRVLLF   64 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iw   64 (224)
                      ....-....|+|+|..++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445677889999996666677666  665555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG3616|consensus

Probab=86.34  E-value=18  Score=31.32  Aligned_cols=186  Identities=12%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---cc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---AV   77 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~   77 (224)
                      +...+.++-++.+..||.|++|+.......+......+-..+.|...|   |+++..|+.+.-|. +.|-..+.+   ..
T Consensus        20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~-~dgvvqqqfdyndq   95 (1636)
T KOG3616|consen   20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG---LVTATSDRRALAWK-EDGVVQQQFDYNDQ   95 (1636)
T ss_pred             eeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc---eEEEeccchhheee-ccCcchhhccccch


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCC-------------------------cEEEEecCCCceeeEeecCCCceeEEEEcC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKD-------------------------GIALYDTRKPKEVLMQYGSCESCMSIRFNK  132 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg-------------------------~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~  132 (224)
                      .+....++...| ..+.++-.-..|                         .|.+-|+.++.....+....-.|..+..--
T Consensus        96 sekefss~~cdp-taqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelkilg  174 (1636)
T KOG3616|consen   96 SEKEFSSILCDP-TAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELKILG  174 (1636)
T ss_pred             hhhhccceecCc-hhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhhhhhcc


Q ss_pred             CCCeEeeeecCCCcEEEECCCCCcceec-----ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeE
Q psy11351        133 AGTQLLGLRRRLPPVLYNTRSSSPVAQF-----DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVL  193 (224)
Q Consensus       133 ~~~~l~~~~~d~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v  193 (224)
                      ..+|++.-.... +.+=|+++.+....-     +|....-...-.++.|+. ..-.++--+.|+++
T Consensus       175 kdryli~~ts~s-iii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~na-geltlveyg~d~sl  238 (1636)
T KOG3616|consen  175 KDRYLIAHTSES-IIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNA-GELTLVEYGNDDSL  238 (1636)
T ss_pred             ccceEEeecccc-EEEeecccchhhhhhcccCCCcceeeeecCcEEEEEec-CeeEEEEecCCCcc

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=86.20  E-value=13  Score=28.40  Aligned_cols=47  Identities=11%  Similarity=-0.056  Sum_probs=31.7

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASA   55 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~   55 (224)
                      ++++.++-+..|.+.-+|.++|+......-.+....++|.  | .+++++
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G-~llvVg  258 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--G-DFAFVG  258 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--C-CEEEEE
Confidence            4556666667777777777777665555556677888888  5 455554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=86.19  E-value=7.8  Score=28.63  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=41.9

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEc--CC-CCcEEEEecCCCEEEEE
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVD--PS-QDAIFASACDDGRVLLF   64 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~--~~-~~~~l~s~~~d~~i~iw   64 (224)
                      .+.-..|+.|.++|.|.|.|.+.-.......-.+....+...  -+ .+..++.++.||.|++.
T Consensus       192 ~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  192 EDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            345678999999999999999887766666443332233322  11 23678888999998764

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.77  E-value=15  Score=28.83  Aligned_cols=12  Identities=25%  Similarity=0.495  Sum_probs=8.8

Q ss_pred             CEEEEEecCCcc
Q psy11351         59 GRVLLFDTRSRE   70 (224)
Q Consensus        59 ~~i~iwd~~~~~   70 (224)
                      ..+.+||..+++
T Consensus       189 ~~v~~YD~~t~~  200 (376)
T PRK14131        189 KEVLSYDPSTNQ  200 (376)
T ss_pred             ceEEEEECCCCe
Confidence            358889987765

>KOG1898|consensus

Probab=85.61  E-value=27  Score=31.39  Aligned_cols=131  Identities=14%  Similarity=0.017  Sum_probs=69.1

Q ss_pred             EEEEEecCCcccceeeccCC----cCeEEEEEcCCCCC-eEEEec-----------CCCcEEEEecCCCceeeEeecCC-
Q psy11351         60 RVLLFDTRSREEATELAVNS----GPFHAVMFNPVEAR-LVATAN-----------SKDGIALYDTRKPKEVLMQYGSC-  122 (224)
Q Consensus        60 ~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~~-~l~~~~-----------~dg~v~i~d~~~~~~~~~~~~~~-  122 (224)
                      .|++.|..+++.+..+....    -.+..+.|+..+.. +++++.           .+|.++.|++-.......+..+. 
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            47778877776554443211    24566667663333 333332           24557777764433323333221 


Q ss_pred             CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEE
Q psy11351        123 ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW  196 (224)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw  196 (224)
                      -+-.-.+..|...++++|- ...+++||+...+++......-  ....++.+++   .+..++.|...-.+.++
T Consensus       934 ~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~--~p~~Is~iqt---~~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKF--IPNRISSIQT---YGARIVVGDIQESVHFV 1001 (1205)
T ss_pred             CCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhcc--CceEEEEEee---cceEEEEeeccceEEEE
Confidence            1222356778777766654 4569999998877766653222  1122333444   45566666654444443

>KOG2280|consensus

Probab=84.22  E-value=26  Score=30.15  Aligned_cols=149  Identities=10%  Similarity=0.058  Sum_probs=74.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeE--E---eccCCeeEEEEcCCCCcEEEEecCCCEEEEE-ecCCcccceeecc---
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDF--Y---LHERPVYGLSVDPSQDAIFASACDDGRVLLF-DTRSREEATELAV---   77 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~--~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~---   77 (224)
                      .+-|+.-..||++++|++.. +.+..  .   .....|..+.|..+| -.+.+.  +|.+.+- +.... ....+..   
T Consensus        94 ~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G-Vavlt~--~g~v~~i~~~~~~-~~~~~~diP~  168 (829)
T KOG2280|consen   94 DEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG-VAVLTV--SGQVILINGVEEP-KLRKMPDIPY  168 (829)
T ss_pred             CceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc-eEEEec--CCcEEEEcCCCcc-hhhhCCCCCC
Confidence            35577778999999999864 33333  1   123345555555555 333333  4455443 33322 2222221   


Q ss_pred             CCcCeEEEEEcCCC-C-CeEEEecCCCcEEEEecCCCc-eeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         78 NSGPFHAVMFNPVE-A-RLVATANSKDGIALYDTRKPK-EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        78 ~~~~i~~~~~~~~~-~-~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      ...+-.|-...+.. . ..++--...-...++...... ....+......+..+..||+.++|+.-..+|.+.+-+.+..
T Consensus       169 ~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  169 NELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             ccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            11121222222211 1 111111100001122222111 12222223466788999999999999999999999888777


Q ss_pred             Ccceec
Q psy11351        155 SPVAQF  160 (224)
Q Consensus       155 ~~~~~~  160 (224)
                      +....+
T Consensus       249 ~~lce~  254 (829)
T KOG2280|consen  249 QILCEF  254 (829)
T ss_pred             hhhhcc
Confidence            666666

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.19  E-value=17  Score=28.04  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEe----ecCCCceeEEEEcCC
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQ----YGSCESCMSIRFNKA  133 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~----~~~~~~v~~~~~~~~  133 (224)
                      -..|+|.| +++++++ ...|.|++++ ..+..   +...    .........++++|+
T Consensus         4 P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            46899999 7777766 4699999999 43433   1111    124456789999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.43  E-value=23  Score=28.82  Aligned_cols=55  Identities=13%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceee----c-cCCcCeEEEEEcCC
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATEL----A-VNSGPFHAVMFNPV   90 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~----~-~~~~~i~~~~~~~~   90 (224)
                      .-...+.++|.|++ .+|++--..|.|++++..++..  +..+    . ..++....|+++|+
T Consensus        28 GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        28 GLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            34567899999998 6776655469999998654432  1111    1 13567899999983

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.17  E-value=4  Score=24.69  Aligned_cols=42  Identities=10%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             ecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         98 ANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        98 ~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      +..+|.+..||..++ ....+...-.....|++++|+.+++.+
T Consensus        33 ~~~~GRll~ydp~t~-~~~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTK-ETTVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTT-EEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCC-eEEEehhCCCccCeEEEcCCCCEEEEE

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.60  E-value=33  Score=30.09  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             eccCCeeEEEEc---C--CC-CcEEEEecCCCEEEEEecCCc---------------ccceeec---cCCcCeEEEEEcC
Q psy11351         34 LHERPVYGLSVD---P--SQ-DAIFASACDDGRVLLFDTRSR---------------EEATELA---VNSGPFHAVMFNP   89 (224)
Q Consensus        34 ~~~~~v~~~~~~---~--~~-~~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~---~~~~~i~~~~~~~   89 (224)
                      ....+|..|+|.   .  +. ..+|++= ....+.|+...-.               .++..+.   ....+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456789999998   2  11 1355444 3456777762111               1223332   1234778999999


Q ss_pred             CCCCeEEEecCCCcEEEEecCCCc----eeeEee-cCC----------CceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         90 VEARLVATANSKDGIALYDTRKPK----EVLMQY-GSC----------ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        90 ~~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~-~~~----------~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .+...||.....|...|||+....    ...... ...          +.-..+.|.++-+.|++++.. .+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCC
Confidence            888999999999999999992111    111111 111          223478898888888887654 5899999887


Q ss_pred             Ccce
Q psy11351        155 SPVA  158 (224)
Q Consensus       155 ~~~~  158 (224)
                      ....
T Consensus       235 ~~~~  238 (765)
T PF10214_consen  235 WQTE  238 (765)
T ss_pred             Cccc
Confidence            6643

These proteins are found in fungi.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.17  E-value=18  Score=26.65  Aligned_cols=139  Identities=10%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             EEEEecCCcccceeeccC-CcCeEEEEEcCCCCCeEEEecCC---CcEEEEecCCCc---eeeE---eecCCCceeEEEE
Q psy11351         61 VLLFDTRSREEATELAVN-SGPFHAVMFNPVEARLVATANSK---DGIALYDTRKPK---EVLM---QYGSCESCMSIRF  130 (224)
Q Consensus        61 i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~---~~~~---~~~~~~~v~~~~~  130 (224)
                      -.+||+.+++. +.+... .--+.+-.+-+ +++++.+|+..   ..+++++.....   ....   .......-....-
T Consensus        48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcE-EeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            45799988763 233221 22334446778 88999988752   347788765410   1111   1122333445566


Q ss_pred             cCCCCeEeeeecCCC-cEEEECCC-CCccee--c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        131 NKAGTQLLGLRRRLP-PVLYNTRS-SSPVAQ--F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~-v~v~d~~~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      -|||+.|+.|+.+.. ...|.... ......  + ..........+.+..|.-++|++++.+..+.  .|||..+.+.
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v  201 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV  201 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence            689999999887643 33443321 111111  1 1000011112223333333799998887654  4668877755

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.10  E-value=23  Score=27.98  Aligned_cols=193  Identities=12%  Similarity=0.102  Sum_probs=100.3

Q ss_pred             CCcce-EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEc----CCCCcE-EEEec-CC---CEEEEEecCC--ccc
Q psy11351          4 GDPIK-VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVD----PSQDAI-FASAC-DD---GRVLLFDTRS--REE   71 (224)
Q Consensus         4 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~s~~-~d---~~i~iwd~~~--~~~   71 (224)
                      .++.+ +++....++-+.+||++..+. ..+. .+..+.++.-    -.+... |+.++ .+   .+|++|.+..  +. 
T Consensus        64 ~dp~kSlIigTdK~~GL~VYdL~Gk~l-q~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-  140 (381)
T PF02333_consen   64 ADPAKSLIIGTDKKGGLYVYDLDGKEL-QSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-  140 (381)
T ss_dssp             S-GGG-EEEEEETTTEEEEEETTS-EE-EEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred             CCcccceEEEEeCCCCEEEEcCCCcEE-Eeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-
Confidence            34444 677777888999999986544 3331 2333433321    123121 33333 32   5799997753  32 


Q ss_pred             ceeec-------cCCcCeEEEEE--cCCCC-CeEEEecCCCcEEEEecCC---Cc----eeeEeecCCCceeEEEEcCCC
Q psy11351         72 ATELA-------VNSGPFHAVMF--NPVEA-RLVATANSKDGIALYDTRK---PK----EVLMQYGSCESCMSIRFNKAG  134 (224)
Q Consensus        72 ~~~~~-------~~~~~i~~~~~--~~~~~-~~l~~~~~dg~v~i~d~~~---~~----~~~~~~~~~~~v~~~~~~~~~  134 (224)
                      +..+.       .....++.+|+  ++.++ .+++....+|.+..|.+..   +.    .+..+ .-.+.+..|......
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPEGCVVDDET  219 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EEEEEEETTT
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcceEEEEeccc
Confidence            22221       11234667776  34233 4666677889988887752   21    22333 345578899999888


Q ss_pred             CeEeeeecCCCcEEEECCCC--C---cceecc---cCCcccceeeeEEEEeCCCCeE-EEEcCCCCeEEEEeCCCCCe
Q psy11351        135 TQLLGLRRRLPPVLYNTRSS--S---PVAQFD---HEGYYNSCTMKSCCFAGTQDEY-VVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       135 ~~l~~~~~d~~v~v~d~~~~--~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+|+.+-++.-|+-|+.+..  .   .+....   ....+-.+++..   .+....| |++.-.+++..+|+......
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~---~~~g~gYLivSsQG~~sf~Vy~r~~~~~  294 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYY---GSDGKGYLIVSSQGDNSFAVYDREGPNA  294 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE----CCC-EEEEEEEGGGTEEEEEESSTT--
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEe---cCCCCeEEEEEcCCCCeEEEEecCCCCc
Confidence            89999988876777776522  1   121111   122333333321   1212344 45555678999999886533

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		3e-04
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		5e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		7e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		7e-04

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 1   MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
           +  G+ I+V ++    D  +S D+ +       L  +P Y +S+ PS+  I A     G+
Sbjct: 463 LEEGNTIQVFKL---SDLEVSFDLKTP------LRAKPSY-ISISPSETYIAAGDVX-GK 511
Query: 61  VLLFDTRSRE-EATELAVNSGPFHAVMFNP---------VEARLVATANSKDGIALYDTR 110
           +LL+D +SRE + +  A  +   +A+ + P         +E  LVAT +    I +Y  +
Sbjct: 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571
Query: 111 KPKEVL 116
           +P +++
Sbjct: 572 RPXKII 577

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 1   MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
           +  G+ I+V ++    D  +S D+ +       L  +P Y +S+ PS+  I A     G+
Sbjct: 463 LEEGNTIQVFKL---SDLEVSFDLKTP------LRAKPSY-ISISPSETYIAAGDVM-GK 511
Query: 61  VLLFDTRSRE-EATELAVNSGPFHAVMFNP---------VEARLVATANSKDGIALYDTR 110
           +LL+D +SRE + +  A  +   +A+ + P         +E  LVAT +    I +Y  +
Sbjct: 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571
Query: 111 KPKEVL 116
           +P +++
Sbjct: 572 RPMKII 577

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 32  FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF--HAVMFNP 89
           +  H   V  ++  P +D++F S  +D R+LL+DTR  + A+++  ++  +   ++ ++P
Sbjct: 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224
Query: 90  VEARLVATANSKDGIALYDTRKPKEVL 116
            ++ +    +    ++L DT+    VL
Sbjct: 225 QQSEVFVFGDENGTVSLVDTKSTSCVL 251

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 32  FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT---ELAVNSGPFHAVMFN 88
           F  H   V  +S     +++F S  DD +++++DTRS   +     +  ++   + + FN
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 89  PVEARLVATANSKDGIALYDTRKPKEVLMQYGS 121
           P    ++AT ++   +AL+D R  K  L  + S
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFES 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	8e-12
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-11
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	1e-07
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-11
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-07
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	6e-07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	3e-06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	5e-06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	2e-05
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	8e-05
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	3e-04
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	8e-04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	7e-06
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	9e-06
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-05
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	2e-04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	9e-05
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-04
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	1e-04
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	2e-04
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	4e-04
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	7e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	6e-04
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	9e-04

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 32/192 (16%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN---SGPFHAVMFNPVE 91
           H   V  ++     +++F S  DD +++++DTR+   +         +   + + FNP  
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289

Query: 92  ARLVATANSKDG-IALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLG---------- 139
             ++AT  S D  +AL+D R  K  L  +    +    ++++     +L           
Sbjct: 290 EFILATG-SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348

Query: 140 ---LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
               +        +     P   F H G+     +    +   +   + S S+D ++ +W
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK--ISDFSWNPNEPWIICSVSEDNIMQVW 406

Query: 197 RVPRDDIYVSSD 208
           ++  +++Y   +
Sbjct: 407 QM-AENVYNDEE 417

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 32/182 (17%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA-------VMF 87
           H++  YGLS +P+ +    SA DD  + L+D  +  +   +      F         V +
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239

Query: 88  NPVEARLVATANSKDG-IALYDTRKP---KEVLMQYGSCESCMSIRFNKAGTQLL----- 138
           + +   L  +  + D  + ++DTR     K              + FN     +L     
Sbjct: 240 HLLHESLFGSV-ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298

Query: 139 --GLRRRLPPVLYNTRS-SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLY 194
              +       L++ R+    +  F+ H+            ++   +  + S   D  L+
Sbjct: 299 DKTVA------LWDLRNLKLKLHSFESHKDEIF-----QVQWSPHNETILASSGTDRRLH 347

Query: 195 MW 196
           +W
Sbjct: 348 VW 349

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 41/191 (21%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH----------A 84
           HE  V      P    + A+      VL+FD        E +    P             
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186

Query: 85  VMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQY-------GSCESCMSIRFNKAGTQ 136
           + +NP     + +A S D  I L+D     +            G       + ++     
Sbjct: 187 LSWNPNLNGYLLSA-SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245

Query: 137 LLG-------LRRRLPPVLYNTRS---SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVV 185
           L G       L       +++TR+   S P    D H    N        F    +  + 
Sbjct: 246 LFGSVADDQKLM------IWDTRNNNTSKPSHTVDAHTAEVN-----CLSFNPYSEFILA 294

Query: 186 SGSDDFVLYMW 196
           +GS D  + +W
Sbjct: 295 TGSADKTVALW 305

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 18/110 (16%)

Query: 12  VIGNDDHVIS-HDMASGD-PID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDT-R 67
             G+ D  ++  D+ +    +  F  H+  ++ +   P  + I AS+  D R+ ++D  +
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353

Query: 68  SREEATELAVNSGPF-----HA--------VMFNPVEARLVATANSKDGI 104
             EE +      GP      H           +NP E  ++ +  S+D I
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV-SEDNI 402

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 12  VIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
             G+    +    +   +     LH+  V     +P  D + A++  D  V L+D R+ +
Sbjct: 179 ATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238

Query: 71  EATELAVNSG---PFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVL------MQYG 120
           +            P +A  FNP ++  + T   +   I +Y +    +         +  
Sbjct: 239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDWSKPDQIIIHPHRQF 297

Query: 121 SCESCMSIRFNKAGTQLLGLRRRLPPV---------LYNTRSSSPVAQFDHEGYYNSCTM 171
              + +   ++     ++  R     +         +Y+  S   V Q          + 
Sbjct: 298 QHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIIS- 356

Query: 172 KSCCFAGTQDEYVVSGSDDFVLYMWRV 198
               F+ T D  + SG    +  +W  
Sbjct: 357 -LNKFSPTGD-VLASGMGFNI-LIWNR 380

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 31/185 (16%)

Query: 23  DMASGDP---IDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAV 77
           D    +    I        + G+  +         +   G   +  F     +   +   
Sbjct: 102 DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161

Query: 78  NSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQ 136
               +  V  +    +++AT     G + L       E+  +           FN     
Sbjct: 162 WDYWYCCVDVSV-SRQMLATG-DSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218

Query: 137 LLG-------LRRRLPPVLYNTRS----SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVV 185
           L+        ++      L++ R+    +S +A+  HE   N     +  F  T    ++
Sbjct: 219 LMATSSVDATVK------LWDLRNIKDKNSYIAEMPHEKPVN-----AAYFNPTDSTKLL 267

Query: 186 SGSDD 190
           +    
Sbjct: 268 TTDQR 272

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 23/181 (12%), Positives = 44/181 (24%), Gaps = 24/181 (13%)

Query: 22  HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-- 78
             + S          +R V  L   P+     A     G ++L+D   + + + +     
Sbjct: 58  RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP 117

Query: 79  SGPFHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGT 135
                 + FN      +  + S  G   L D      +              +  + +  
Sbjct: 118 GDAITGMKFNQFNTNQLFVS-SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ 176

Query: 136 QLL------GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD 189
            L        L       L          +  H+            F    D  + + S 
Sbjct: 177 MLATGDSTGRLL------LLGLDGHEIFKEKLHKAKVT-----HAEFNPRCDWLMATSSV 225

Query: 190 D 190
           D
Sbjct: 226 D 226

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 12  VIGNDDHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
           ++   + V+  D+ +   +      H   +      P  D +   A     V L++  SR
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSR 872

Query: 70  EEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSI 128
            +  +   +    H VMF+P +     TA S D  I +++T+K  +        E    +
Sbjct: 873 LKVADCRGHLSWVHGVMFSP-DGSSFLTA-SDDQTIRVWETKKVCKNSAIVLKQEI--DV 928

Query: 129 RFNKAGTQLL------GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQD- 181
            F +  T +L      GL+      L   ++         E       +  CC   +   
Sbjct: 929 VFQENETMVLAVDNIRGLQ------LIAGKTGQIDYL--PEA-----QVSCCCL--SPHL 973

Query: 182 EYVVSGSDDFVLYMWRVP 199
           EYV  G +D  + +  +P
Sbjct: 974 EYVAFGDEDGAIKIIELP 991

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 23   DMASGDPI-DFYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
            ++ +G    DF  H+  V   S   S D   F+S   D    ++         EL  ++G
Sbjct: 1071 NVITGRIERDFTCHQGTVL--SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128

Query: 81   PFHAVMFNPVEARLVATA---------NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN 131
                  F+  +  L+AT          N  DG  L+                    + F+
Sbjct: 1129 CVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187

Query: 132  KAGTQLLG----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQD-EYVV 185
                 L+     L+       +N  +      F  +        +K      + D    V
Sbjct: 1188 PDSKTLVSAGGYLK------WWNVATGDSSQTFYTNGTN-----LKKIHV--SPDFRTYV 1234

Query: 186  SGSDDFVLYMWRV 198
            +  +  +LY+ +V
Sbjct: 1235 TVDNLGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 36/205 (17%)

Query: 2    ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRV 61
             + D I+ L++I            +G     YL E  V    + P      A   +DG +
Sbjct: 938  LAVDNIRGLQLI---------AGKTGQID--YLPEAQVSCCCLSP-HLEYVAFGDEDGAI 985

Query: 62   LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYG 120
             + +  +    +    +      + F   + + + ++ S+D  I +++ +    V +Q  
Sbjct: 986  KIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISS-SEDSVIQVWNWQTGDYVFLQ-A 1042

Query: 121  SCESCMSIRFNKAGTQLLG-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSC 174
              E+    R  +    L       ++      ++N  +      F  H+G        SC
Sbjct: 1043 HQETVKDFRLLQDSRLLSWSFDGTVK------VWNVITGRIERDFTCHQGTVL-----SC 1091

Query: 175  CFAGTQD-EYVVSGSDDFVLYMWRV 198
                + D     S S D    +W  
Sbjct: 1092 AI--SSDATKFSSTSADKTAKIWSF 1114

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 14   GNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA 72
             ++D VI   +  +GD +    H+  V        QD+   S   DG V +++  +    
Sbjct: 1021 SSEDSVIQVWNWQTGDYVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078

Query: 73   TELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
             +   + G   +   +  +A   ++  S D    ++       +
Sbjct: 1079 RDFTCHQGTVLSCAISS-DATKFSST-SADKTAKIWSFDLLSPL 1120

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 37/176 (21%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 35  HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
           H   VY      SQD    AS   D  + +F   + E+  ++  +        F+  +  
Sbjct: 614 HTDAVY--HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDS 670

Query: 94  LVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG--------LRRRL 144
            +AT  S D  + ++D+   K V       E      F      LL         L+   
Sbjct: 671 YIATC-SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK--- 726

Query: 145 PPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQD-EYVVSGSDDFVLYMWRV 198
              L++            H    N      C F  + D E + S S D  L +W V
Sbjct: 727 ---LWDLNQKECRNTMFGHTNSVN-----HCRF--SPDDELLASCSADGTLRLWDV 772

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 39/199 (19%)

Query: 23  DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-- 79
           D+   +  +  + H   V      P  D + AS   DG + L+D RS  E   + V    
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFF 787

Query: 80  -----------GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL-MQYGSCESCMS 127
                             ++  +   +  A +K+ + L+D      +  +  G   +   
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSA-DGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845

Query: 128 IRFNKAGTQLLG------LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQ 180
             F+      +       +       L+N  S   VA    H        +    F  + 
Sbjct: 846 CDFSPYDHLAVIALSQYCVE------LWNIDSRLKVADCRGHLS-----WVHGVMF--SP 892

Query: 181 D-EYVVSGSDDFVLYMWRV 198
           D    ++ SDD  + +W  
Sbjct: 893 DGSSFLTASDDQTIRVWET 911

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 8/198 (4%)

Query: 20  ISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS 79
                 + D +    ++ P+   +   + D         G +L  D         L  N 
Sbjct: 40  FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE 99

Query: 80  GPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKA----- 133
                          +  A S DG I + D R   + ++   +  S  +   NK      
Sbjct: 100 ANLGICRICKYGDDKLIAA-SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158

Query: 134 -GTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV 192
             ++L+          +             E                Q+ Y  S  D  V
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 193 LYMWRVPRDDIYVSSDIY 210
              +   + D Y SS  +
Sbjct: 219 AVEFFDDQGDDYNSSKRF 236

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 49/235 (20%)

Query: 2   ASGDPIKVLRVIGNDDHV----ISHD---MASG--------------DPIDFYL-----H 35
            + D  K +  +  D        SH+   +A                +     +     H
Sbjct: 53  LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH 112

Query: 36  ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH---------AVM 86
              V  +  +  QD + AS  ++G + ++D     E+        P           ++ 
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172

Query: 87  FNPVEARLVATANSKDG-IALYDTRKPKEVL------MQYGSCESCMSIRFNKAGTQLLG 139
           +N   A + A+A       +++D +  KEV+         G  +    + ++   +  + 
Sbjct: 173 WNQSLAHVFASA-GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231

Query: 140 L---RRRLPPV-LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD 190
                   P + +++ R+++   Q  ++G+       S  +    +  ++S   D
Sbjct: 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL--SLDWCHQDEHLLLSSGRD 284

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
           H++ +  L      + +  S+  D  VLL++  S E+ ++            F P    L
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320

Query: 95  VATANSKDG-IALYD 108
            A A S D  I +  
Sbjct: 321 FACA-SFDNKIEVQT 334

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 15/143 (10%), Positives = 40/143 (27%), Gaps = 11/143 (7%)

Query: 5   DPIKVLRVIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQD-AIFASACDDGRVL 62
           +      +  ++   I             +  +  V   S    +D  + A    DG + 
Sbjct: 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195

Query: 63  LFDTRSREEATELAV--NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK-----EV 115
           +++  S ++A+             V F       +     +  +  +D RK         
Sbjct: 196 VYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECDQT-VVCFDLRKDVGTLAYPT 253

Query: 116 LMQYGSCESCMSIRFNKAGTQLL 138
                     ++   + +G  ++
Sbjct: 254 YTIPEFKTGTVTYDIDDSGKNMI 276

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 27/189 (14%), Positives = 62/189 (32%), Gaps = 27/189 (14%)

Query: 23  DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
           +  +   +    + E PV        ++       DD R+ +F+  + E+  +   +   
Sbjct: 41  NYETQVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99

Query: 82  FHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLG 139
             ++  +P     V +  S D  + L++      +   + G     M + FN        
Sbjct: 100 IRSIAVHP-TKPYVLSG-SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157

Query: 140 -------LRRRLPPVLYNTRSSSPVAQFD--HEGYYNSCTMKSCCFAGTQD-EYVVSGSD 189
                  ++      +++   S+P        E   N        +    D  Y+++ SD
Sbjct: 158 SGCLDRTVK------VWSLGQSTPNFTLTTGQERGVN-----YVDYYPLPDKPYMITASD 206

Query: 190 DFVLYMWRV 198
           D  + +W  
Sbjct: 207 DLTIKIWDY 215

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 12  VIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE 71
           VI   D V    + S   +        +  +  D S D +      +G ++++D    + 
Sbjct: 74  VINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWML-IGLQNGSMIVYDIDRDQL 132

Query: 72  AT-----------ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
           ++             A    P  ++ +NP +   V  +        Y   + +  
Sbjct: 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-YVTLTYSLVENEIK 186

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 23  DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
           D+ S        +   P  G  + P    ++ +      V + DT +      +   S P
Sbjct: 18  DVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP 76

Query: 82  FHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
              V  +P   ++  T  +   +++ DT      
Sbjct: 77  -QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 12  VIGNDDHVIS-HDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR 69
           V     + +S  D A+ + I        P  G++V P    ++ +      + + DT S 
Sbjct: 48  VANAHSNDVSIIDTATNNVIATVPAGSSP-QGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106

Query: 70  EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
             A  +     P   +  +P   +L  T N    +++ +T     +
Sbjct: 107 TVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 15  NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE 74
            D  V   +  +   I+     R   G++V P    ++ +  D   + + DT +      
Sbjct: 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195

Query: 75  LAVNSGPFHAVMFNPVEARL-VATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNK 132
           + V + P   +  NP   +  V   +     +++ DT   K +  +         I    
Sbjct: 196 VKVEAAP-SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPVGPDPAGIAVTP 253

Query: 133 AGTQLL 138
            G ++ 
Sbjct: 254 DGKKVY 259

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 15  NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD--DGRVLLFDTRSREEA 72
           +   +   D  +   ID    E    G++V+P     + +  D     V + DT + +  
Sbjct: 178 DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237

Query: 73  TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
             + V   P   +   P   ++    +  + +++ DT      
Sbjct: 238 ARIPVGPDP-AGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 12  VIGNDDHVISH-DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE 70
           V       +S  D  S          +   GL++ P    ++ +   D  V + +T ++ 
Sbjct: 90  VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149

Query: 71  EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
               ++V   P   +   P   ++         I++ DT     +
Sbjct: 150 VINTVSVGRSPKG-IAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 38/221 (17%)

Query: 2   ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFASAC 56
            +   + ++         +   +     +D  +     H  PV  ++  P  D + AS  
Sbjct: 42  VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS 101

Query: 57  DDGRVLLFDTRS-------REEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
           +D  V++++          RE    L  ++     V ++P    ++ +A   D  I ++D
Sbjct: 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-GCDNVILVWD 160

Query: 109 --TRKPKEVLMQYGSCESCMSIRFNKAGTQLLG------LRRRLPPVLYNTRSSSPVAQF 160
             T      L      ++  S+ +++ G  +        +R      +   R  + VA+ 
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR------VIEPRKGTVVAEK 214

Query: 161 D--HEGYYNSCTMKSCCFAGTQDEYVVSG---SDDFVLYMW 196
           D  HEG      +        + + + +G     +  + +W
Sbjct: 215 DRPHEGTRPVHAVFVS-----EGKILTTGFSRMSERQVALW 250

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 23/190 (12%)

Query: 23  DMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV---N 78
              SG+ + +   H + +    +  S+     +  DDG V+ +     + +         
Sbjct: 146 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205

Query: 79  SGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNKA---G 134
                 V F+P     V T    D  I+ +D +  + +       E      F  +    
Sbjct: 206 GSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264

Query: 135 TQLL-G-----LRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS 188
            +         +R      +++  +S  V ++  +              G  +  ++S S
Sbjct: 265 QKFATVGADATIR------VWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLS 316

Query: 189 DDFVLYMWRV 198
            D  L  + +
Sbjct: 317 LDGTLNFYEL 326

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 2   ASGDPIKVLRVIGNDDHVIS-HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
            S + + V    GN   V    D+     +           +S+ PS +   A+    G+
Sbjct: 454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-KTPLRAKPSYISISPS-ETYIAAGDVMGK 511

Query: 61  VLLFDTRSREE-ATELAVNSGPFHAVMFNP---------VEARLVATANSKDG-IALYDT 109
           +LL+D +SRE   +  A  +   +A+ + P         +E  LVAT  S D  I +Y  
Sbjct: 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIYSV 570

Query: 110 RKPKEVL 116
           ++P +++
Sbjct: 571 KRPMKII 577

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 19/175 (10%)

Query: 35  HERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEAR 93
              P+  +S D   +         D   +     S     E++ +S   +A         
Sbjct: 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 174

Query: 94  LVATANSKDG-IALYD--TRKPKEVLMQY-GSCESCMSIRFNKAGTQLL---GLRRRLPP 146
              T    DG +  Y     K       +         + F+    + +   G  R++  
Sbjct: 175 RSMTV-GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI-- 231

Query: 147 VLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFA-GTQD-EYVVSGSDDFVLYMWRV 198
             ++ +S   +    D +       ++   FA    D +   +   D  + +W V
Sbjct: 232 SCFDGKSGEFLKYIEDDQEP-----VQGGIFALSWLDSQKFATVGADATIRVWDV 281

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 23  DMASGDPI---DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS 79
           D+ +   +        +     + V  + +    S   DG +  ++    E    ++ ++
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339

Query: 80  GPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKE 114
               A+  NP     + +  S DG I  + +    +
Sbjct: 340 KGITALTVNP-----LISG-SYDGRIMEWSSSSMHQ 369

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 45.1 bits (106), Expect = 7e-06
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 38/193 (19%)

Query: 40  YGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATEL-----AVNSGPFH---AVMFNPV 90
           +  S+  + D   + SA DD R+ L+     + +  +     A          A  F+P 
Sbjct: 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN 237

Query: 91  EARLVATANSKDGIALYDTRK----------------PKEVLMQYGSCESCMSIRFNKAG 134
                  ++SK  I L D R                 P           S   ++F+ +G
Sbjct: 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297

Query: 135 TQL---------LGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSC--TMKSCCFAGTQDEY 183
             +         +         +   +    +       Y N C      CC+ G+ D  
Sbjct: 298 RYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS-DSV 356

Query: 184 VVSGSDDFVLYMW 196
           V++GS +    M+
Sbjct: 357 VMTGSYNNFFRMF 369

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 44.9 bits (105), Expect = 9e-06
 Identities = 28/206 (13%), Positives = 56/206 (27%), Gaps = 15/206 (7%)

Query: 2   ASGD-PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR 60
            S +  I  L +I N   V    M     +   L +      + D            +G 
Sbjct: 231 VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLSPTTVVCGFKNGF 288

Query: 61  VLLFDTRSREEAT-ELAVNSGPFHAVMF--NPVEARLVATANSKDGIALYDTRKPKEVLM 117
           V  FD    E  +    V+     +V    +  E  +V+T        +++ +       
Sbjct: 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348

Query: 118 QYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSC 174
                   + + + +       +            +R++  V      E    +      
Sbjct: 349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG---- 404

Query: 175 CFAGTQDEYVVSGSDDFVLYMWRVPR 200
                    V++GS D  L +    R
Sbjct: 405 --VSRLHPMVLAGSADGSLIITNAAR 428

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 23/191 (12%)

Query: 26  SGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA------------- 72
                  Y     V  +++ P+ D  FA +  DG++++      ++              
Sbjct: 101 VYSSSLTYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159

Query: 73  ---TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV--LMQYGSCESCMS 127
                   N        F   E  L+    +   + ++D R  + +  +       +  S
Sbjct: 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219

Query: 128 IRFNKAGTQLL--GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVV 185
           I  ++    L+    R  +   +++ R +  +  +    +     ++ C F G     VV
Sbjct: 220 ICIDEECCVLILGTTRGII--DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277

Query: 186 SGSDDFVLYMW 196
            GS    L +W
Sbjct: 278 GGSSKTFLTIW 288

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 30/183 (16%)

Query: 23  DMASGDPI---DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-ATELAVN 78
           D+ + + +   +       V  + +D     +       G + ++D R      +    +
Sbjct: 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVL-ILGTTRGIIDIWDIRFNVLIRSWSFGD 256

Query: 79  SGPFHAVMFNPVEAR---LVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT 135
             P   V       +   +V   +SK  + +++  K         S E      F     
Sbjct: 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316

Query: 136 QLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYM 195
            L  L           RS + ++                  + + D+ +++      + M
Sbjct: 317 GLEELN------FCGIRSLNALS----------------TISVSNDKILLTDEATSSIVM 354

Query: 196 WRV 198
           + +
Sbjct: 355 FSL 357

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 23  DMASGDPIDFYLHERPVYGL--SVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG 80
           D  +    D +  E  VY    S   ++  + A      +V L D +S   +  L  +  
Sbjct: 128 DTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187

Query: 81  PFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLM 117
              AV ++P    ++ATA S D  + L+D R+    L+
Sbjct: 188 EILAVSWSPRYDYILATA-SADSRVKLWDVRRASGCLI 224

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 35  HERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVN---------SGPFHA 84
           H R +Y   +   Q     A+AC D  + +F      +  +   +         S   + 
Sbjct: 251 HSRTIY--DIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC 308

Query: 85  VMFNPVEARLVATANSKDG-IALYDTRKPKEV 115
           V +NP E  L+A+  S DG +A +  ++P+ +
Sbjct: 309 VAWNPKEPGLLASC-SDDGEVAFWKYQRPEGL 339

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 23  DMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
           D++SG  +     H   V+  + +P  + I  S   D  V ++D ++ +    L  +S P
Sbjct: 93  DVSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVKTGKCLKTLPAHSDP 151

Query: 82  FHAVMFNPVEARLVATANSKDG-IALYD--TRKPKEVLMQYGSCESCMSIRFNKAGTQLL 138
             AV FN  +  L+ ++ S DG   ++D  + +  + L+          ++F+  G  +L
Sbjct: 152 VSAVHFNR-DGSLIVSS-SYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYIL 208

Query: 139 -G-----LRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDF 191
                  L+      L++      +  +  H+            F+ T  +++VSGS+D 
Sbjct: 209 AATLDNTLK------LWDYSKGKCLKTYTGHKNEKYCI---FANFSVTGGKWIVSGSEDN 259

Query: 192 VLYMWRV 198
           ++Y+W +
Sbjct: 260 LVYIWNL 266

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 14/114 (12%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 12  VIGNDDHVIS-HDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS 68
            +G  D  +  + ++     +     H   +  ++   +  A   +     +V+ +   +
Sbjct: 464 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSVAN 522

Query: 69  REEATE---LAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQ 118
             E         ++     V ++P +   +AT  S D  + +++  KP +  + 
Sbjct: 523 NFELAHTNSWTFHTAKVACVSWSP-DNVRLATG-SLDNSVIVWNMNKPSDHPII 574

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 39  VYGLSVDPSQDAIFASACD------DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA 92
            Y ++    ++A++ +          G V   D  + E    +  +  PF     N    
Sbjct: 43  AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFG-ATINNTTQ 101

Query: 93  RLVATANSKDGIALYDTRKPKEV 115
            L         +   D +  +  
Sbjct: 102 TLWFGNTVNSAVTAIDAKTGEVK 124

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 11/93 (11%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 23  DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
           D  +G+ +           +  +P+++  + +    G+V + D +S +        + P 
Sbjct: 259 DTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP- 316

Query: 83  HAVMFNPVEARLVATANSKDGIALYDTRKPKEV 115
           +++  +     L  +   K       T+    +
Sbjct: 317 NSLALSADGKTLYVSVKQKSTKQQEATQPDDVI 349

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 12/125 (9%), Positives = 40/125 (32%), Gaps = 10/125 (8%)

Query: 23  DMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF 82
           D  + +      ++   +G +++ +   ++     +  V   D ++ E    L ++    
Sbjct: 75  DPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR 134

Query: 83  ---------HAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCESCMSIRFNK 132
                      ++ +     +  +   K+  I + D    K       + +    +  + 
Sbjct: 135 TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194

Query: 133 AGTQL 137
            G +L
Sbjct: 195 EGKRL 199

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 41  GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANS 100
            +S+D ++   F +      VL+ DTR+     ++A       AV+FNP       T   
Sbjct: 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQ 292

Query: 101 KDGIALYDTRKPKEV 115
              +++ D +  K V
Sbjct: 293 AGKVSVIDAKSYKVV 307

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 26  SGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV 85
           +G           V G++  P      A+   DGR   +D  +R +         P  A 
Sbjct: 263 NGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321

Query: 86  MFNPVEARLVATANSKDGIALYDTRKPKE 114
            FN     + A A+S D    ++   P++
Sbjct: 322 CFNH-NGNIFAYASSYDWSKGHEFYNPQK 349

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 52/178 (29%)

Query: 23  DMASGDPID-FYLHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG 80
           D+ SG  +  F+ H   V  L + PS+    F S   D + +++D RS +       +  
Sbjct: 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241

Query: 81  PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL 140
             ++V + P      A+  S D                        + R           
Sbjct: 242 DVNSVRYYP-SGDAFASG-SDDA-----------------------TCR----------- 265

Query: 141 RRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA--GTQDEYVVSGSDDFVLYMW 196
                  LY+ R+   VA +  E      +  S  F+  G     + +G +D+ + +W
Sbjct: 266 -------LYDLRADREVAIYSKESIIFGAS--SVDFSLSGR---LLFAGYNDYTINVW 311

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
               V  +  +P+  ++ A    DG + +       +      ++    +V ++P + + 
Sbjct: 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQ 206

Query: 95  VATANSKDGIALYDTRKPKE 114
           +A       +  Y     ++
Sbjct: 207 LAVGKQNGTVVQYLPTLQEK 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.35
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.27
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.01
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.96
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.95
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.91
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.87
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.84
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.69
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.63
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.59
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.52
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.49
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.48
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.42
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.35
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.34
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.23
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.13
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.12
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.08
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.07
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.94
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.91
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.9
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.87
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.78
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.69
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.66
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.62
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.6
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.6
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.59
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.56
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.51
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.46
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.41
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.26
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.66
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.26
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.25
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.17
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.05
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.03
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.44
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.85
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.7
3ott_A	758	Two-component system sensor histidine kinase; beta	93.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.05
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.98
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.32
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.84
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.26
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.66
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.88
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.94
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.0
3ott_A	758	Two-component system sensor histidine kinase; beta	87.25
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	84.8
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	84.06
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	80.18

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=251.77  Aligned_cols=198  Identities=16%  Similarity=0.223  Sum_probs=170.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec--cC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA--VN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~   78 (224)
                      ++++++++|++|+.|++|++||+++++++..+ +|...|++++|+|++..+|++++.|++|++||++++++...+.  .+
T Consensus       134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  213 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP  213 (344)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee
Confidence            45678899999999999999999999998888 8999999999999986789999999999999999998877764  45


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ...+.+++|+|.+++++++|+.||.|++||+++++.+..+.+|...|++++|+|++ ++|++++.|++|++||+++++.+
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF  293 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence            56799999999778899999999999999999999889999999999999999998 57899999999999999998876


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ....|.+.|.+     ++|+|.+..+|++++.|++|++|++.+....
T Consensus       294 ~~~~H~~~V~~-----v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          294 RSQAHRDFVRD-----ATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             EECCCSSCEEE-----EEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             EEcCCCCCEEE-----EEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            65578777654     7778854567889999999999999886553

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=247.25  Aligned_cols=191  Identities=16%  Similarity=0.148  Sum_probs=164.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      +.+++|+.||+|+|||+++++.....     +|.+.|++++|+|++ ++|++|+.|++|++||+++++.+..+.+|...|
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            46889999999999999988765432     799999999999998 899999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCccee
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .+++|+|++..++++++.|+.|++||+++++....+.  .+...+.+++|+|+ +++|++++.|+.|++||+++++++..
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~  252 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS  252 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred             EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence            9999999555789999999999999999987766654  35667999999995 56788999999999999999999988


Q ss_pred             c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      + .|...+.+     ++|+|+...+|++|+.|+.|++||+.+++..
T Consensus       253 ~~~h~~~v~~-----v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          253 SAVHSQCVTG-----LVFSPHSVPFLASLSEDCSLAVLDSSLSELF  293 (344)
T ss_dssp             EECCSSCEEE-----EEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred             EcCCCCCEEE-----EEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence            8 57776654     6777744478999999999999999988764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.7e-39  Score=239.27  Aligned_cols=197  Identities=13%  Similarity=0.155  Sum_probs=172.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +++++.+++|++++.||+|++||+++++.+..+ .|..+|.+++|+|++ ++|++|+.|++|++||+++++.+..+.+|.
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~   97 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHP   97 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcEEEEEeCCC
Confidence            356778899999999999999999999888777 799999999999998 899999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee-eEeecCCCceeEEEEcC-CCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV-LMQYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ..|.+++|+| ++.++++|+.|+.|++||++++..+ ..+.+|...|.+++|+| ++..|++++.|+.|++||++++.+.
T Consensus        98 ~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A           98 DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred             CcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            9999999999 8899999999999999999987444 45667999999999999 5789999999999999999888776


Q ss_pred             eec--ccCCcccceeeeEEEEeC-CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        158 AQF--DHEGYYNSCTMKSCCFAG-TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       158 ~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+  .+...+.     .+.|+| .++.+|++|+.|+.|++||+++++..
T Consensus       177 ~~~~~~~~~~v~-----~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~  221 (304)
T 2ynn_A          177 FTLTTGQERGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (304)
T ss_dssp             EEEECCCTTCEE-----EEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceeccCCcCcEE-----EEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence            665  2333333     255555 25789999999999999999998765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.5e-39  Score=248.58  Aligned_cols=196  Identities=19%  Similarity=0.220  Sum_probs=178.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ++.+.++++++|+.||+|++||+.+++....+ +|...|++++|+|++ ++|++|+.|++|++||+++++.+..+.+|..
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  193 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDH  193 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCEEECCCCCSS
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Confidence            34567889999999999999999999988877 899999999999998 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|.+++|+| ++.++++|+.|+.|++||++++.....+.+|...|.++.|+|++.++++++.|+.|++||+++++....+
T Consensus       194 ~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          194 NVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence            999999999 8899999999999999999999988889999999999999999999999999999999999999888777


Q ss_pred             -ccCCcccceeeeEEEEeCC-------------------CCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 -DHEGYYNSCTMKSCCFAGT-------------------QDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~-------------------~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .|...+.+     ++|+|.                   .+.+|++|+.|+.|++||+.+++..
T Consensus       273 ~~h~~~v~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          273 REHRHVVEC-----ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             CCCSSCEEE-----EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             cCCCceEEE-----EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence             56666555     555552                   1678999999999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.9e-39  Score=240.40  Aligned_cols=195  Identities=16%  Similarity=0.256  Sum_probs=178.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +..+.+.++++++.|++|++||+.+++.+..+ .|...+.+++|+|++ ++|++++.|+.|++||+++++....+..|..
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~  165 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGK  165 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence            34566789999999999999999999988877 788899999999999 8999999999999999999998888888999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|.+++|+| ++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+
T Consensus       166 ~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          166 FILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence            999999999 8999999999999999999999888888899999999999999999999999999999999999888777


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .|...+.+     ++|+| ++.+|++++.|+.|++||+.++++.
T Consensus       245 ~~h~~~v~~-----~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          245 SGHASWVLN-----VAFCP-DDTHFVSSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             CCCSSCEEE-----EEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cCCCCceEE-----EEECC-CCCEEEEEeCCCcEEEEeCCCCEEE
Confidence             56666554     66777 7999999999999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-39  Score=241.67  Aligned_cols=190  Identities=18%  Similarity=0.264  Sum_probs=175.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++++++|++|+.||+|++||+++++....+ .|...+.+++|+|++ ++|++|+.|+.|++||+++++.+..+.+|..
T Consensus       129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~  207 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAM  207 (321)
T ss_dssp             EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCC
Confidence            45677899999999999999999999887766 788899999999999 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      +|.+++|+| ++.+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+
T Consensus       208 ~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          208 PIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             CCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            999999999 8999999999999999999999888888899999999999999999999999999999999999998888


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                       .|.+.+.+     ++|+| ++.+|++++.|+.|++||.+
T Consensus       287 ~~h~~~v~~-----v~~s~-~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          287 FDHQDQVWG-----VKYNG-NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCCSSCEEE-----EEECT-TSSEEEEEETTCCEEEEECC
T ss_pred             cCCCCcEEE-----EEECC-CCCEEEEEeCCCeEEEEeCC
Confidence             67776654     66777 79999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-38  Score=237.37  Aligned_cols=195  Identities=15%  Similarity=0.188  Sum_probs=171.5

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccCCc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVNSG   80 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~   80 (224)
                      ...++++|++|+.|++|++||+++++.+..+ +|...|++++|+|++ ++|++|+.|++|++||++++. ....+.+|..
T Consensus        63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            3456789999999999999999999988877 899999999999998 899999999999999998874 4567889999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcC--CCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNK--AGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      .|.+++|+|.++.+|++|+.|+.|++||+++......+. .+...+..+.|+|  ++.+|++++.|+.|++||+++++++
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~  221 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence            999999999667899999999999999998876655554 4667899999987  6789999999999999999999988


Q ss_pred             eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        158 AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       158 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+ .|...+..     ++|+| ++.+|++|+.||.|++||+.+++..
T Consensus       222 ~~~~~h~~~v~~-----~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          222 ATLEGHMSNVSF-----AVFHP-TLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEEECCSSCEEE-----EEECS-SSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             eeeCCCCCCEEE-----EEECC-CCCEEEEEcCCCeEEEEECCCCcee
Confidence            888 57666554     66777 7899999999999999999998775

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.3e-39  Score=244.80  Aligned_cols=197  Identities=16%  Similarity=0.242  Sum_probs=173.5

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee--ccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL--AVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~   78 (224)
                      ++.+++++|++|+.|++|++||+++++++..+ +|...|++++|+|++..++++++.|++|++||++++++...+  ..+
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~  225 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS  225 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence            45678899999999999999999999988887 899999999999998678999999999999999998876554  456


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ...+.+++|+|+++.+|++|+.|+.|++||+++++....+..|...|++++|+|++ ++|++++.|++|++||+++++.+
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            67899999999667899999999999999999998888888999999999999987 57889999999999999999888


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..+.|.+.+++     ++|+|.++.+|++++.|+.|++|++.+...
T Consensus       306 ~~~~H~~~V~~-----vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          306 RDLSHRDFVTG-----VAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EECCCSSCEEE-----EEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EECCCCCCEEE-----EEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            87788877654     778886789999999999999999977543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-38  Score=247.60  Aligned_cols=195  Identities=14%  Similarity=0.185  Sum_probs=178.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ++.+.+++|++|+.|++|++||+.+++++..+ +|...|.+++|+|++ ++|++|+.|++|++||+++++++..+.+|..
T Consensus       157 ~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~  235 (410)
T 1vyh_C          157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  235 (410)
T ss_dssp             EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence            45667889999999999999999999988877 899999999999998 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC--------------------CCeEeee
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA--------------------GTQLLGL  140 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~  140 (224)
                      .|.++.++| ++.++++|+.|+.|++||+++++....+..|...|.+++|+|+                    +.+|+++
T Consensus       236 ~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          236 WVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             cEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            999999999 8999999999999999999999888888899999999999996                    6689999


Q ss_pred             ecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        141 RRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+.|++||+++++++..+ .|...+.+     ++|+| ++.+|++|+.|+.|++||+.+++..
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~-----v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~  373 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRG-----VLFHS-GGKFILSCADDKTLRVWDYKNKRCM  373 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEE-----EEECS-SSSCEEEEETTTEEEEECCTTSCCC
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEE-----EEEcC-CCCEEEEEeCCCeEEEEECCCCceE
Confidence            99999999999999988888 57776655     56666 7999999999999999999988764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.8e-38  Score=235.67  Aligned_cols=159  Identities=11%  Similarity=0.121  Sum_probs=142.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +...++++|++|+.|++|++||+.+++.+..+ +|...|.+++|+|++ .+|++|+.|++|++||++ ++.+..+.+|..
T Consensus        72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~  149 (319)
T 3frx_A           72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIK-GQCLATLLGHND  149 (319)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence            45677899999999999999999999988777 899999999999998 899999999999999997 456778889999


Q ss_pred             CeEEEEEcCC-----CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         81 PFHAVMFNPV-----EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        81 ~i~~~~~~~~-----~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      .|.+++|.|.     ++..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999983     23489999999999999999988888888999999999999999999999999999999999887


Q ss_pred             cceeccc
Q psy11351        156 PVAQFDH  162 (224)
Q Consensus       156 ~~~~~~~  162 (224)
                      .+..+.+
T Consensus       230 ~~~~~~~  236 (319)
T 3frx_A          230 AMYTLSA  236 (319)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            7666543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.9e-37  Score=231.30  Aligned_cols=195  Identities=14%  Similarity=0.204  Sum_probs=176.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++.+++|++++.||.|++|++.+++....+ +|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+.+|..
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  108 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN  108 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcEEEEEcCCCC
Confidence            45677899999999999999999999888777 899999999999998 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|.+++|+| ++.++++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       109 ~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  187 (312)
T 4ery_A          109 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  187 (312)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence            999999999 8999999999999999999999888888889999999999999999999999999999999998877766


Q ss_pred             c--cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 D--HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 ~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .  +...     +..++|+| ++++|++++.|+.|++||+.+++..
T Consensus       188 ~~~~~~~-----~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          188 IDDDNPP-----VSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCL  227 (312)
T ss_dssp             CCSSCCC-----EEEEEECT-TSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             eccCCCc-----eEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            2  2233     33467888 7999999999999999999988764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.8e-37  Score=232.48  Aligned_cols=197  Identities=15%  Similarity=0.211  Sum_probs=174.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc----eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD----PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   76 (224)
                      +..+.++++++|+.|+.|++|++.+.+    ....+ +|.+.|.++.|++++  .+++++.|++|++||+++++.+..+.
T Consensus       104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEc
Confidence            356678899999999999999998764    22333 899999999999876  58899999999999999999999999


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      +|...|.+++|+| ++.++++|+.|+.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       182 ~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          182 GHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            9999999999999 889999999999999999999988888889999999999999999999999999999999999888


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +..+.+......  +..++|+| ++.+|++|+.|+.|++||+.+++..
T Consensus       261 ~~~~~~~~~~~~--v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          261 LMTYSHDNIICG--ITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             EEEECCTTCCSC--EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEccCCcccc--eEEEEECC-CCCEEEEECCCCeEEEEEcccCcEe
Confidence            777755443222  44588888 7999999999999999999988765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-36  Score=231.29  Aligned_cols=199  Identities=16%  Similarity=0.198  Sum_probs=169.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceee------------------------------------------------EE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPID------------------------------------------------FY   33 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------------------------------~~   33 (224)
                      +..+++++|++|+.||+|++||..+++...                                                .+
T Consensus        71 ~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~  150 (354)
T 2pbi_B           71 DWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV  150 (354)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee
Confidence            445667788888888888888876554321                                                12


Q ss_pred             -eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCC-CCCeEEEecCCCcEEEEecCC
Q psy11351         34 -LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPV-EARLVATANSKDGIALYDTRK  111 (224)
Q Consensus        34 -~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~  111 (224)
                       +|...|.+++|+|++ ..|++++.|++|++||+++++.+..+.+|...|.+++|+|. ++.+|++|+.||.|++||+++
T Consensus       151 ~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~  229 (354)
T 2pbi_B          151 AMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS  229 (354)
T ss_dssp             EECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred             eccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence             588889999999998 79999999999999999999999999999999999999884 358999999999999999999


Q ss_pred             CceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        112 PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                      ++....+..|...|.+++|+|++++|++++.|++|++||+++++.+..+.......  ....++|+| ++.+|++|+.|+
T Consensus       230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~--~~~~~~~s~-~g~~l~~g~~d~  306 (354)
T 2pbi_B          230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF--GASSVDFSL-SGRLLFAGYNDY  306 (354)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS--CEEEEEECT-TSSEEEEEETTS
T ss_pred             CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc--ceeEEEEeC-CCCEEEEEECCC
Confidence            98888888999999999999999999999999999999999887776664332222  244578888 799999999999


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      .|++||+.+++..
T Consensus       307 ~i~vwd~~~~~~~  319 (354)
T 2pbi_B          307 TINVWDVLKGSRV  319 (354)
T ss_dssp             CEEEEETTTCSEE
T ss_pred             cEEEEECCCCceE
Confidence            9999999988765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.8e-37  Score=233.52  Aligned_cols=194  Identities=20%  Similarity=0.258  Sum_probs=173.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----cceeec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----EATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~   76 (224)
                      +.++++++|++|+.||+|++||+.+++.+..+ .|...|.+++|+|++ ++|++|+.|+.+++||+.+++    ....+.
T Consensus        62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~  140 (340)
T 1got_B           62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence            45677899999999999999999999888777 799999999999998 899999999999999998753    345677


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      +|...|.++.|++ ++ .+++++.|+.|++||+++++....+.+|...|.+++|+|+++++++++.|+.|++||+++++.
T Consensus       141 ~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~  218 (340)
T 1got_B          141 GHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC  218 (340)
T ss_dssp             CCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence            8999999999998 54 488999999999999999988888889999999999999999999999999999999999988


Q ss_pred             ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...+ .|...+.+     ++|+| ++++|++|+.|+.|++||+++++..
T Consensus       219 ~~~~~~h~~~v~~-----v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          219 RQTFTGHESDINA-----ICFFP-NGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             EEEECCCSSCEEE-----EEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEcCCcCCEEE-----EEEcC-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            8888 56666554     66777 7999999999999999999988764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.2e-37  Score=230.85  Aligned_cols=189  Identities=14%  Similarity=0.198  Sum_probs=167.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCC-----ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          7 IKVLRVIGNDDHVISHDMASG-----DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~-----~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +++|++|+.|++|++|++...     .++..+ +|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+.+|..
T Consensus        30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~  108 (319)
T 3frx_A           30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGETYQRFVGHKS  108 (319)
T ss_dssp             TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCeeEEEccCCC
Confidence            479999999999999998643     234444 899999999999998 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCC------CCeEeeeecCCCcEEEECCCC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKA------GTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      .|.+++|+| ++.++++|+.|+.|++||++. +.+..+.+|...|.++.|+|.      +..+++++.|+.|++||+++.
T Consensus       109 ~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  186 (319)
T 3frx_A          109 DVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF  186 (319)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence            999999999 899999999999999999974 467778889999999999985      448999999999999999998


Q ss_pred             Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +....+ .|...+.+     ++|+| ++.+|++|+.|+.|++||+.+++..
T Consensus       187 ~~~~~~~~h~~~v~~-----~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          187 QIEADFIGHNSNINT-----LTASP-DGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEEEEECCCCSCEEE-----EEECT-TSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             hhheeecCCCCcEEE-----EEEcC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            877777 57766654     66777 7999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-36  Score=225.74  Aligned_cols=198  Identities=19%  Similarity=0.311  Sum_probs=174.5

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +..+.+++|++++.|+.|++||+++++++..+ +|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+..|..
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence            45667899999999999999999999988777 899999999999998 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      +|.+++|+| ++.++++++.||.|++||+++++....+. .+...+..++|+|++++|++++.|+.|++||+++++.+..
T Consensus       151 ~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  229 (312)
T 4ery_A          151 PVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT  229 (312)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            999999999 88999999999999999999987766654 4667899999999999999999999999999999988887


Q ss_pred             c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      + .|......+.   ..+++.++.+|++|+.||.|++||+.+++..
T Consensus       230 ~~~~~~~~~~~~---~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          230 YTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             ECSSCCSSSCCC---EEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred             EEecCCceEEEE---EEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence            7 4544433322   3455447899999999999999999998775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.8e-37  Score=232.44  Aligned_cols=188  Identities=20%  Similarity=0.275  Sum_probs=166.5

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCC-CcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQ-DAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ..+.++.|++++.|++|++||+++++++..+ +|...|.+++|+|+. .++|++|+.|++|++||+++++++..+..|..
T Consensus       162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~  241 (354)
T 2pbi_B          162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES  241 (354)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence            3456778999999999999999999998877 899999999998852 27999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      .|.+++|+| ++.+|++++.|+.|++||++..+....+..  +...+.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus       242 ~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          242 DVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            999999999 889999999999999999998866555543  33578999999999999999999999999999998887


Q ss_pred             ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        159 QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      .+ .|.+.+.+     ++|+| ++.+|++|+.|+.|++|+
T Consensus       321 ~l~~h~~~v~~-----l~~sp-dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ILFGHENRVST-----LRVSP-DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECCCSSCEEE-----EEECT-TSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCcEEE-----EEECC-CCCEEEEEcCCCCEEecC
Confidence            77 57776655     66777 799999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-36  Score=232.81  Aligned_cols=195  Identities=19%  Similarity=0.282  Sum_probs=165.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++++++|++|+.|++|++||+.+++.+..+ +|...|++++|+|++ ++|++++.|++|++||+++++....+. +..
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  207 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS-IED  207 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence            34667899999999999999999999888777 899999999999998 899999999999999999998776665 456


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-------ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-------YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .+.+++|+|.++.++++|+.|+.|++||+++++....+       .+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            79999999977899999999999999999988766555       46889999999999999999999999999999976


Q ss_pred             CCc------------ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSP------------VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...            ...+ .|...+.     .++|+| ++.+|++|+.|+.|++||+.+++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVL-----SVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             -------------CEEEEEECCSSCEE-----EEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCcccccCCCCCcceEEEecccCcEE-----EEEECC-CCCEEEEEeCCCeEEEEECCCCeEE
Confidence            432            2222 3554444     466777 7899999999999999999998775

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-36  Score=232.00  Aligned_cols=194  Identities=16%  Similarity=0.146  Sum_probs=159.3

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceee-----EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPID-----FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      .++++ +++++.||+|+|||+.+++...     ..+|...|++++|+|++ ++|++|+.|++|++||+++++.+..+..|
T Consensus       103 s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h  180 (357)
T 4g56_B          103 VSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAH  180 (357)
T ss_dssp             ETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence            44454 5677889999999998876542     22799999999999998 89999999999999999999999999999


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      ...|.+++|+|++..++++++.|+.|++||+++++....+.  .+...+.+++|+|+ +.+|++++.|+.|++||+++++
T Consensus       181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            99999999999555789999999999999999887655443  46778999999998 4678889999999999999999


Q ss_pred             cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++..+ .|...+.+     ++|+|.++++|++|+.|+.|+|||+++++..
T Consensus       261 ~~~~~~~~~~~v~~-----l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          261 SAQTSAVHSQNITG-----LAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             GCEEECCCSSCEEE-----EEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             EeEEEeccceeEEE-----EEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            88888 46665544     7778855578999999999999999998765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.2e-37  Score=232.41  Aligned_cols=191  Identities=19%  Similarity=0.235  Sum_probs=163.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceee--EE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc--ccee
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPID--FY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--EATE   74 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~   74 (224)
                      ++.++++++|++|+.|++|+|||+++++...  ..  +|...|.+++|+|++ ++|++|+.|+++++||++.+.  .+..
T Consensus        22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFECVTT  100 (345)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeEEEEE
Confidence            3567788999999999999999998876432  22  799999999999998 899999999999999998764  5678


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      +.+|...|.+++|+| ++++|++++.|+.|++||+++...   ...+..|...|.+++|+|++++|++++.|+.|++||.
T Consensus       101 ~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~  179 (345)
T 3fm0_A          101 LEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE  179 (345)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred             ccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence            889999999999999 899999999999999999987643   3445679999999999999999999999999999999


Q ss_pred             CCCCcc--eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        152 RSSSPV--AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       152 ~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ++++..  ..+ .|...+.+     ++|+| ++++|++++.|+.|++|+..
T Consensus       180 ~~~~~~~~~~~~~h~~~v~~-----l~~sp-~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          180 EEDDWVCCATLEGHESTVWS-----LAFDP-SGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             ETTEEEEEEEECCCSSCEEE-----EEECT-TSSEEEEEETTSCEEEEEEE
T ss_pred             cCCCEEEEEEecCCCCceEE-----EEECC-CCCEEEEEeCCCeEEEeccc
Confidence            877533  344 46665554     67777 79999999999999999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.4e-36  Score=226.35  Aligned_cols=186  Identities=17%  Similarity=0.226  Sum_probs=158.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCc-------eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGD-------PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      ++++|++|+.|++|++||+.+.+       +...+ +|...|++++|+|++ .++++|+.|++|++||+++++.+..+.+
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~  116 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRFVG  116 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCEEEEEEC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            67899999999999999997543       33444 899999999999998 8999999999999999999999999999


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee---cCCCceeEEEEcCCC----------CeEeeeecCC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY---GSCESCMSIRFNKAG----------TQLLGLRRRL  144 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~~~d~  144 (224)
                      |...|.+++|+| ++++|++++.|+.|++||++.. ......   .|...|.+++|+|++          .++++++.|+
T Consensus       117 h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  194 (343)
T 2xzm_R          117 HQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG  194 (343)
T ss_dssp             CCSCEEEEEECS-STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred             CCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence            999999999999 8899999999999999999843 333333   588899999999987          7899999999


Q ss_pred             CcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        145 PPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .|++||. +.+....+ .|...+.+     ++|+| ++++|++|+.|+.|++||+.+.
T Consensus       195 ~i~iwd~-~~~~~~~~~~h~~~v~~-----~~~s~-~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          195 RLKVWNT-NFQIRYTFKAHESNVNH-----LSISP-NGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEEEEET-TTEEEEEEECCSSCEEE-----EEECT-TSSEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEcC-CCceeEEEcCccccceE-----EEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence            9999994 34444555 56666554     66777 7999999999999999999544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.8e-36  Score=223.01  Aligned_cols=194  Identities=16%  Similarity=0.242  Sum_probs=162.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC--ceeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCcc--ccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG--DPIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSRE--EATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~--~~~~   74 (224)
                      +++..+++|++|+.|++|+|||++.+  +++..+ +|.++|++++|+|.  + ++|++|+.|++|++||+++++  .+..
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~   94 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAV   94 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence            56678999999999999999999753  555555 89999999999864  5 799999999999999998874  4566


Q ss_pred             eccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCce--eeEeecCCCceeEEEEcCC-------------CCeE
Q psy11351         75 LAVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPKE--VLMQYGSCESCMSIRFNKA-------------GTQL  137 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~-------------~~~l  137 (224)
                      +..|...|.+++|+| +  +.+|++++.|+.|++||+++...  ...+..|...|.+++|+|+             +++|
T Consensus        95 ~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l  173 (297)
T 2pm7_B           95 HAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (297)
T ss_dssp             ECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred             eecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence            778999999999999 5  78999999999999999987632  3456689999999999997             5799


Q ss_pred             eeeecCCCcEEEECCCCC----cceec-ccCCcccceeeeEEEEeCCC--CeEEEEcCCCCeEEEEeCCCCC
Q psy11351        138 LGLRRRLPPVLYNTRSSS----PVAQF-DHEGYYNSCTMKSCCFAGTQ--DEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ++++.|+.|++||+++++    ....+ .|...+.+     ++|+|..  +.+|++++.|+.|++||+++++
T Consensus       174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~-----v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD-----VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE-----EEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE-----EEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence            999999999999998766    33444 46666554     6777732  5899999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-35  Score=228.57  Aligned_cols=190  Identities=20%  Similarity=0.281  Sum_probs=164.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC-CcccceeeccCC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR-SREEATELAVNS   79 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~   79 (224)
                      +..|++|+.|++|++||+.+++.+..+      +|...|.+++|+|.++++|++|+.|++|++||++ .++.+..+.+|.
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~  249 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE  249 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence            457999999999999999999887665      5889999999988444899999999999999998 456788889999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-------CCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-------CESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      ..|.+++|+| ++.+|++|+.||.|++||+++++.+..+..+       ...+++++|+|+|++|++++.|+.|++||+.
T Consensus       250 ~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          250 GDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             CCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            9999999999 8999999999999999999998776665432       2348999999999999999999999999999


Q ss_pred             CCCcceec-----ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        153 SSSPVAQF-----DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       153 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +++.+..+     .|.+.+.+     ++|+| ++.+|++|+.|+.|++|++...+.
T Consensus       329 ~~~~~~~~~~~~~~h~~~v~~-----l~~s~-dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          329 LAEMVLNLGTLQNSHEGRISC-----LGLSS-DGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             TCCEEEEECCSCSSCCCCCCE-----EEECS-SSSEEEEECTTSCEEEEECCSSSS
T ss_pred             CCceEEEEecccCCCCCceEE-----EEECC-CCCEEEEeeCCCCEEEEecCCCcc
Confidence            88877665     35555555     66677 799999999999999999987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.5e-35  Score=236.55  Aligned_cols=153  Identities=14%  Similarity=0.228  Sum_probs=134.9

Q ss_pred             CCcce-EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec-----
Q psy11351          4 GDPIK-VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA-----   76 (224)
Q Consensus         4 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----   76 (224)
                      .+.+. .|++|+.|++|++||..++++...+ +|...|++++|+|++ ++|++|+.|++|++||+.+++....+.     
T Consensus       156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~  234 (611)
T 1nr0_A          156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  234 (611)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence            34444 6999999999999999988888777 899999999999998 899999999999999999988777773     


Q ss_pred             --cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-------------------------------------
Q psy11351         77 --VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-------------------------------------  117 (224)
Q Consensus        77 --~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-------------------------------------  117 (224)
                        +|.+.|.+++|+| ++++|++++.|+.|++||+++++....                                     
T Consensus       235 ~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          235 NVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             SCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred             ccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence              7999999999999 899999999999999999987654322                                     


Q ss_pred             ------eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351        118 ------QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus       118 ------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                            +.+|...|++++|+|+|++|++++.|+.|++||+.+++...
T Consensus       314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence                  23688899999999999999999999999999998765443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=223.31  Aligned_cols=148  Identities=18%  Similarity=0.227  Sum_probs=131.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---cceee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATEL   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~   75 (224)
                      +.++.+++|++|+.|+++++||+..++  ++..+ +|...|.+++|+|++ ++|++|+.|++|++||+++++   .+..+
T Consensus        68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            456778999999999999999998774  34445 899999999999998 899999999999999998764   35667


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce--eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE--VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ..|...|.+++|+| ++.+|++++.|+.|++||+++++.  ...+.+|...|.+++|+|++++|++++.|++|++||.
T Consensus       147 ~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          147 NSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             cCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            88999999999999 889999999999999999987753  3556789999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.9e-36  Score=230.64  Aligned_cols=196  Identities=17%  Similarity=0.199  Sum_probs=170.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-------cce
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-------EAT   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~   73 (224)
                      +.++.+++|++|+.||+|+|||+.+++....+ .|...|.+++|+|++ ++|++|+.|+.+++||+.+..       ...
T Consensus        73 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           73 DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence            45677889999999999999999999888777 899999999999998 899999999999999987532       345


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-----ecCCCceeEEEEcC-CCCeEeeeecCCCcE
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-----YGSCESCMSIRFNK-AGTQLLGLRRRLPPV  147 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~  147 (224)
                      .+.+|.+.+.++.|.|.++..+++|+.|+.|++||+++++....+     .+|...|.+++|++ +++++++++.|+.|+
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            678999999999999966778999999999999999998877665     46889999999987 789999999999999


Q ss_pred             EEECC-CCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        148 LYNTR-SSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       148 v~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +||++ .++.+..+ .|.+.+++     ++|+| ++.+|++|+.|+.|++||+++++..
T Consensus       232 ~wd~~~~~~~~~~~~~h~~~v~~-----v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          232 LWDLRITSRAVRTYHGHEGDINS-----VKFFP-DGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             EEETTTTCCCCEEECCCSSCCCE-----EEECT-TSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             EEECCCCCcceEEECCcCCCeEE-----EEEec-CCCeEEEEcCCCeEEEEECCCCcEE
Confidence            99998 44666666 68777776     56666 7999999999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-35  Score=229.23  Aligned_cols=197  Identities=15%  Similarity=0.187  Sum_probs=167.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcC-CCCcEEEEecCCCEEEEEecCCcccceee-----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATEL-----   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----   75 (224)
                      +..+.+++|++++.|++|++||+.++++...+.+...+.+++|+| ++ ++|++|+.|+.|++||+++++.+..+     
T Consensus       172 ~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~  250 (393)
T 1erj_A          172 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENE  250 (393)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             EEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeeccccc
Confidence            345678899999999999999999999888888889999999999 55 89999999999999999988876655     


Q ss_pred             --ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc------------eeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         76 --AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK------------EVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        76 --~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                        .+|...|.+++|+| ++.+|++++.|+.|++||+++..            ....+.+|...|.+++|+|++.+|++++
T Consensus       251 ~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          251 SGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             --CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             CCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence              57889999999999 89999999999999999997632            3345667999999999999999999999


Q ss_pred             cCCCcEEEECCCCCcceec-ccCCcccceeeeE-EEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        142 RRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKS-CCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .|+.|++||+++++++..+ .|.+.+.++.+.+ ..|+| ++++|++|+.||.|++|++...
T Consensus       330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p-~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCC-CCCEEEEECCCCcEEECccccc
Confidence            9999999999999988888 6777776654432 12334 5899999999999999998654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3e-35  Score=238.86  Aligned_cols=194  Identities=18%  Similarity=0.209  Sum_probs=165.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce--eeEE-eccCCeeEEEEcCCCCcEEEEecCC----CEEEEEecCCccccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP--IDFY-LHERPVYGLSVDPSQDAIFASACDD----GRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~   74 (224)
                      +++++|++||+|+.|++|+|||+.+++.  ...+ +|.++|.+++|+|++ +.|++++.+    +.|++||  .++....
T Consensus        66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd--~~~~~~~  142 (611)
T 1nr0_A           66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFD--TGTSNGN  142 (611)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETT--TCCBCBC
T ss_pred             EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEee--CCCCcce
Confidence            5678899999999999999999976543  3333 799999999999999 788887765    4788887  4566778


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~  154 (224)
                      +.+|...|.+++|+|++...|++++.|+.|++||.++.+....+.+|...|.+++|+|+|++|++++.|++|++||+.++
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence            89999999999999943447999999999999999988777888899999999999999999999999999999999998


Q ss_pred             Ccceec--------ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQF--------DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+..+        .|.+.+.     .++|+| ++++|++++.|+.|++||+.+++..
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~-----~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVF-----GLTWSP-DGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEE-----EEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEeeeeccccccccccCCCEE-----EEEECC-CCCEEEEEeCCCeEEEEeCCCCcee
Confidence            877666        3555444     477777 7999999999999999999988764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-35  Score=225.90  Aligned_cols=191  Identities=10%  Similarity=0.004  Sum_probs=159.8

Q ss_pred             CCCCcceEEEEE--eCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce--eecc
Q psy11351          2 ASGDPIKVLRVI--GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT--ELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~   77 (224)
                      +++++|++++++  +.|++|+|||+++++++..+.|...|++++|+|++ +++++++.+ .+.+|+..+++.+.  ....
T Consensus       140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          140 YISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             EECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCC
T ss_pred             EEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCC
Confidence            456778877654  47899999999999999888999999999999999 899999855 56667666666443  3456


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCC----cEEEEecCCCce----eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKD----GIALYDTRKPKE----VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      |...|.+++|+| ++.++++++.++    .+++||+.....    ...+..|...|++++|+|+|++|++|+.|++|+||
T Consensus       218 ~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw  296 (365)
T 4h5i_A          218 KNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV  296 (365)
T ss_dssp             TTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence            888999999999 889999988777    588899876643    23455789999999999999999999999999999


Q ss_pred             ECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        150 NTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       150 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      |+++++++..+  .|...|++     ++|+| ++++|++|+.|++|+|||++..
T Consensus       297 d~~~~~~~~~~~~gH~~~V~~-----v~fSp-dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          297 KLKDLSMSKIFKQAHSFAITE-----VTISP-DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ETTTTEEEEEETTSSSSCEEE-----EEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred             ECCCCcEEEEecCcccCCEEE-----EEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence            99999998875  47777665     66777 7999999999999999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.9e-35  Score=227.82  Aligned_cols=193  Identities=13%  Similarity=0.142  Sum_probs=168.5

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ...++++|++|+.||.|++||+.+++....+ +|...|++++|+|++ ++|++|+.|+.|++||+++++.+..+.+|...
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  183 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRAT  183 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred             EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence            3567889999999999999999999888876 899999999999998 89999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec---CC---------------------CceeEEEEcCCCCeE
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SC---------------------ESCMSIRFNKAGTQL  137 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~---------------------~~v~~~~~~~~~~~l  137 (224)
                      |.+++|+| ++.+|++++.|+.|++||+++++....+..   +.                     ..+.+++|+|++++|
T Consensus       184 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          184 VTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             EEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred             EEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence            99999999 899999999999999999999887776653   33                     444555668899999


Q ss_pred             eeeecCCCcEEEECCCCCcceecc--cCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCCCCe
Q psy11351        138 LGLRRRLPPVLYNTRSSSPVAQFD--HEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++++.|+.|++||+++++....+.  |...+.     .++|+| ++. +|++|+.||.|++||+++++.
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-----~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN-----SLTVDG-NNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCTTSSCEE-----EEEECS-SCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             EEEcCCCeEEEEECCCCceeEEcccccCCCce-----eEEEeC-CCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            999999999999999988777762  444444     477777 566 999999999999999998765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-35  Score=221.22  Aligned_cols=186  Identities=16%  Similarity=0.235  Sum_probs=151.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCc--eeeEE--e-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-------cccceeec
Q psy11351          9 VLRVIGNDDHVISHDMASGD--PIDFY--L-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-------REEATELA   76 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~   76 (224)
                      +|++|+.|++|++||++.++  ....+  + |...|++++|+|++ ++|++|+.|++|++||++.       .+.+..+.
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~  104 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE  104 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEEc
Confidence            89999999999999998753  34444  3 99999999999998 8999999999999999853       23456778


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC----ceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP----KEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      +|...|.+++|+| ++++|++|+.|+.|++||++..    +....+.+|...|.+++|+|++++|++++.|++|++||..
T Consensus       105 ~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          105 GHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             ----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999 8999999999999999999532    3445567899999999999999999999999999999987


Q ss_pred             CC--Ccceec-ccCCcccceeeeEEEEeCCC-CeEEEEcCCCCeEEEEeCCCC
Q psy11351        153 SS--SPVAQF-DHEGYYNSCTMKSCCFAGTQ-DEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       153 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      ++  +++..+ .|.+.+.+     ++|+|.. +.+|++|+.|+.|++||+.++
T Consensus       184 ~~~~~~~~~~~~h~~~v~~-----~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          184 DDDWECVAVLNGHEGTVWS-----SDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             TTEEEEEEEECCCSSCEEE-----EEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCeeEEEEccCCCCcEEE-----EEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            66  455566 57666654     5666632 568999999999999998654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-35  Score=220.92  Aligned_cols=192  Identities=18%  Similarity=0.174  Sum_probs=153.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCC-------CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMAS-------GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR----   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----   69 (224)
                      +.++.+++|++|+.|++|+|||+..       .+++..+ +|...|++++|+|++ ++|++|+.|++|++||++..    
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCe
Confidence            4566788999999999999999853       2344445 899999999999998 89999999999999999532    


Q ss_pred             ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC--ceeeEeecCCCceeEEEEcCC--CCeEeeeecCCC
Q psy11351         70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP--KEVLMQYGSCESCMSIRFNKA--GTQLLGLRRRLP  145 (224)
Q Consensus        70 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~  145 (224)
                      +++..+.+|...|.+++|+| ++.+|++++.|+.|++||.+++  +.+..+.+|...|.+++|+|+  +.+|++++.|++
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             EEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            35667889999999999999 8999999999999999999876  456667789999999999998  678999999999


Q ss_pred             cEEEECCCCC--------cceec-c-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        146 PVLYNTRSSS--------PVAQF-D-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       146 v~v~d~~~~~--------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      |++||++++.        ....+ . |...+.     .++|++  +.+|++++.||.|++||..+++
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~v~~s~--~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY-----NVAWGF--NGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEE-----EEEECT--TSCEEEEETTSCEEEEEEETTE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceE-----EEEEcC--CCEEEEEeCCCEEEEEEcCCCc
Confidence            9999987542        22222 1 444444     466765  3489999999999999998774

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-36  Score=231.17  Aligned_cols=195  Identities=9%  Similarity=0.083  Sum_probs=157.8

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCC--ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---ccee
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASG--DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATE   74 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~   74 (224)
                      ++.++++++|++|+.|+.|++||+.++  +.+..+ +|...|++++|+|++ ++|++++.|++|++||+++++   ....
T Consensus        17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~~   95 (377)
T 3dwl_C           17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTLV   95 (377)
T ss_dssp             CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CCCCEEE
T ss_pred             EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeeeE
Confidence            356778899999999999999999988  555555 899999999999998 899999999999999999877   5667


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEeec-CCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQYG-SCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      +..|...|.+++|+| ++++|++++.|+.|++||+++++.   ...+.. |...|.+++|+|++++|++++.|+.|++||
T Consensus        96 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  174 (377)
T 3dwl_C           96 LLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLS  174 (377)
T ss_dssp             CCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred             ecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            788999999999999 889999999999999999998763   556666 999999999999999999999999999999


Q ss_pred             CCCC------------------CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        151 TRSS------------------SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       151 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++..                  +++..+.|.+.+     ..++|+| ++++|++++.|+.|++||+.+++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          175 AYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV-----HAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             ECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE-----EEEEECT-TSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEecccCCCccccccccccchhhhhhcccCCceE-----EEEEECC-CCCEEEEEeCCCcEEEEECCCCCC
Confidence            8632                  233333344444     3477777 799999999999999999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-35  Score=221.45  Aligned_cols=194  Identities=16%  Similarity=0.227  Sum_probs=158.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce--eeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCcc--ccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP--IDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSRE--EATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~--~~~~   74 (224)
                      +++..+++|++|+.|++|+|||+.+++.  +..+ +|.+.|++++|+|.  + ++|++|+.|++|++||+++++  ....
T Consensus        20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~   98 (316)
T 3bg1_A           20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWEKSHE   98 (316)
T ss_dssp             EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred             eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcceEEEE
Confidence            4567789999999999999999987753  3444 89999999999863  5 799999999999999999874  4566


Q ss_pred             eccCCcCeEEEEEcCCC-CCeEEEecCCCcEEEEecCCCce---eeEeecCCCceeEEEEcCC-----------------
Q psy11351         75 LAVNSGPFHAVMFNPVE-ARLVATANSKDGIALYDTRKPKE---VLMQYGSCESCMSIRFNKA-----------------  133 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------  133 (224)
                      +.+|...|.+++|+|+. +.+|++|+.|+.|++||++....   ...+..|...+.+++|+|+                 
T Consensus        99 ~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  178 (316)
T 3bg1_A           99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY  178 (316)
T ss_dssp             ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCC
T ss_pred             ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccc
Confidence            78899999999999932 78999999999999999987532   2333468889999999997                 


Q ss_pred             CCeEeeeecCCCcEEEECCCCC---cceec-ccCCcccceeeeEEEEeCCC---CeEEEEcCCCCeEEEEeCCCC
Q psy11351        134 GTQLLGLRRRLPPVLYNTRSSS---PVAQF-DHEGYYNSCTMKSCCFAGTQ---DEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       134 ~~~l~~~~~d~~v~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +++|++++.|+.|++||++...   ++..+ .|...+.+     ++|+|..   +.+|++++.|+.|++|++.+.
T Consensus       179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~-----v~~sp~~~~~~~~las~s~D~~v~iw~~~~~  248 (316)
T 3bg1_A          179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD-----VAWAPSIGLPTSTIASCSQDGRVFIWTCDDA  248 (316)
T ss_dssp             CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE-----EECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred             cceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE-----EEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence            4789999999999999997652   44444 46666554     6677732   378999999999999999873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.5e-35  Score=219.46  Aligned_cols=195  Identities=16%  Similarity=0.208  Sum_probs=161.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc----eeeEE-eccCCeeEEEEcC--CCCcEEEEecCCCEEEEEecCCc-----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD----PIDFY-LHERPVYGLSVDP--SQDAIFASACDDGRVLLFDTRSR-----   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~-~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~-----   69 (224)
                      +.++++++|++|+.||+|++||+.++.    ....+ +|...|++++|+|  ++ ++|++++.||.|++||++++     
T Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~   96 (351)
T 3f3f_A           18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS   96 (351)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS
T ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc
Confidence            456788999999999999999998763    33444 7999999999999  46 89999999999999999887     


Q ss_pred             ----ccceeeccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCce-----------------------------
Q psy11351         70 ----EEATELAVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPKE-----------------------------  114 (224)
Q Consensus        70 ----~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~-----------------------------  114 (224)
                          +.+..+..|...|.+++|+| +  +.++++++.||.|++||+++++.                             
T Consensus        97 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (351)
T 3f3f_A           97 GRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW  175 (351)
T ss_dssp             SCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred             ccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence                44667788999999999999 7  89999999999999999876431                             


Q ss_pred             -------------------------------eeEeecCCCceeEEEEcCCC----CeEeeeecCCCcEEEECCCC-----
Q psy11351        115 -------------------------------VLMQYGSCESCMSIRFNKAG----TQLLGLRRRLPPVLYNTRSS-----  154 (224)
Q Consensus       115 -------------------------------~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~v~v~d~~~~-----  154 (224)
                                                     ...+..|...|.+++|+|++    ++|++++.|+.|++||++++     
T Consensus       176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  255 (351)
T 3f3f_A          176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA  255 (351)
T ss_dssp             CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred             ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence                                           22233588899999999998    89999999999999999864     


Q ss_pred             -----------------------------------------Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        155 -----------------------------------------SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       155 -----------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                                                               +.+..+ .|.+.+.     .++|+| ++++|++++.||.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~~~~s~-~~~~l~s~~~dg~  329 (351)
T 3f3f_A          256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW-----SVSWNL-TGTILSSAGDDGK  329 (351)
T ss_dssp             -----------------------------------CCSEEEEEEEEECTTSSCEE-----EEEECS-SSCCEEEEETTSC
T ss_pred             cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE-----EEEEcC-CCCEEEEecCCCc
Confidence                                                     223333 2444444     467777 7899999999999


Q ss_pred             EEEEeCCCCCeE
Q psy11351        193 LYMWRVPRDDIY  204 (224)
Q Consensus       193 v~iw~~~~~~~~  204 (224)
                      |++|++.+++.+
T Consensus       330 v~iw~~~~~~~~  341 (351)
T 3f3f_A          330 VRLWKATYSNEF  341 (351)
T ss_dssp             EEEEEECTTSCE
T ss_pred             EEEEecCcCcch
Confidence            999999998765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.4e-34  Score=214.27  Aligned_cols=191  Identities=9%  Similarity=0.181  Sum_probs=156.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCccc--ceeeccCC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSREE--ATELAVNS   79 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~   79 (224)
                      +++|++|+.|++|++||+++++  .+..+ +|...|.+++|+|+  + .+|++++.|++|++||++++..  ...+.+|.
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence            7899999999999999999874  33344 79999999999997  6 7999999999999999987642  45667899


Q ss_pred             cCeEEEEEcCCC------------CCeEEEecCCCcEEEEecCCCc----eeeEeecCCCceeEEEEcCCC---CeEeee
Q psy11351         80 GPFHAVMFNPVE------------ARLVATANSKDGIALYDTRKPK----EVLMQYGSCESCMSIRFNKAG---TQLLGL  140 (224)
Q Consensus        80 ~~i~~~~~~~~~------------~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~  140 (224)
                      ..|.+++|+|..            +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|+++
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            999999999931            4799999999999999998765    344566899999999999985   899999


Q ss_pred             ecCCCcEEEECCCCCc--c-eec---ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        141 RRRLPPVLYNTRSSSP--V-AQF---DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~--~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|++|++||+++...  . ..+   .+...     +..++|+| ++++|++++.|+.|++|+......+
T Consensus       226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~-~g~~las~~~D~~v~lw~~~~~g~w  289 (297)
T 2pm7_B          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSL-SGNVLALSGGDNKVTLWKENLEGKW  289 (297)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECS-SSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             ECCCcEEEEEeCCCCCccceeeeecccCCCc-----EEEEEECC-CCCEEEEEcCCCcEEEEEECCCCcE
Confidence            9999999999986431  1 122   23333     34578888 7999999999999999998754433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.7e-34  Score=220.52  Aligned_cols=194  Identities=16%  Similarity=0.181  Sum_probs=165.4

Q ss_pred             CCC-cceEEEEEeCCCcEEEEeCCCC-------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          3 SGD-PIKVLRVIGNDDHVISHDMASG-------DPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         3 ~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      .++ .+++|++|+.||+|++||+.++       +++..+ +|...|.+++|+|+++++|++++.|+.|++||+++++.+.
T Consensus        89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  168 (402)
T 2aq5_A           89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL  168 (402)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE
Confidence            444 6789999999999999999987       445555 8999999999999986799999999999999999999888


Q ss_pred             ee--ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-ecCCCc-eeEEEEcCCCCeEeee---ecCCCc
Q psy11351         74 EL--AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-YGSCES-CMSIRFNKAGTQLLGL---RRRLPP  146 (224)
Q Consensus        74 ~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~d~~v  146 (224)
                      .+  ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|.+. +.++.|+|++++|+++   +.|+.|
T Consensus       169 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i  247 (402)
T 2aq5_A          169 TLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV  247 (402)
T ss_dssp             EECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE
T ss_pred             EEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE
Confidence            88  78999999999999 8999999999999999999999887777 567665 8999999999999998   789999


Q ss_pred             EEEECCCCCc-ceec--ccCCcccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCCCCCe
Q psy11351        147 VLYNTRSSSP-VAQF--DHEGYYNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       147 ~v~d~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++||+++++. +...  .+...+.     .++|+| ++++| ++|+.|+.|++||+.+++.
T Consensus       248 ~iwd~~~~~~~~~~~~~~~~~~v~-----~~~~s~-~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          248 ALWDTKHLEEPLSLQELDTSSGVL-----LPFFDP-DTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEETTBCSSCSEEEECCCCSSCE-----EEEEET-TTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEEcCccccCCceEEeccCCCcee-----EEEEcC-CCCEEEEEEcCCCeEEEEEecCCCc
Confidence            9999998765 3232  3444433     467888 56666 5677899999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-34  Score=226.68  Aligned_cols=191  Identities=14%  Similarity=0.155  Sum_probs=157.4

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec--cCCc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA--VNSG   80 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~   80 (224)
                      .+++||+|+.||+|+|||+.+++.....   +|.+.|++++|+|.+.++|++|+.||+|++||++++.......  .+..
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  210 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI  210 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence            3568999999999999999887654433   7999999999998544899999999999999998765332222  3344


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCC-eEeeeecCCCcEEEECCCCCccee
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT-QLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .+.+++|+| ++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++. ++++++.|+.|++||+++.+....
T Consensus       211 ~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          211 WFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             CCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             cEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence            678999999 899999999999999999975 45667778999999999999976 677899999999999998765544


Q ss_pred             c----ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 F----DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +    .|...+.+     ++|+| ++.+|++++.|+.|++||+.+++..
T Consensus       289 ~~~~~~h~~~v~~-----~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          289 FLYSLPHRHPVNA-----ACFSP-DGARLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             CSBCCBCSSCEEE-----CCBCT-TSSEEEEEESSSCEEEEESSSSSSE
T ss_pred             EEEeeeccccccc-----eeECC-CCCeeEEEcCCCEEEEEECCCCccc
Confidence            4    35555554     56677 7999999999999999999988764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.2e-34  Score=234.26  Aligned_cols=191  Identities=15%  Similarity=0.240  Sum_probs=165.5

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCc-----eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGD-----PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      .+++|++|+.|++|++||+.+..     ....+ +|...|.+++|+|++ ++|++|+.|++|++||+.+++....+.+|.
T Consensus       394 ~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~  472 (694)
T 3dm0_A          394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGVSTRRFVGHT  472 (694)
T ss_dssp             CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcceeEEeCCC
Confidence            35799999999999999997643     23333 899999999999998 899999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe---ecCCCceeEEEEcCCC--CeEeeeecCCCcEEEECCCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ---YGSCESCMSIRFNKAG--TQLLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~v~d~~~~  154 (224)
                      ..|.+++|+| ++.+|++++.|+.|++||+.........   .+|...|.+++|+|++  ..+++++.|+.|++||++++
T Consensus       473 ~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          473 KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence            9999999999 8899999999999999998755332222   2588899999999986  57999999999999999998


Q ss_pred             Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +....+ .|.+.+.+     ++|+| ++++|++|+.|+.|++||+.+++..
T Consensus       552 ~~~~~~~~h~~~v~~-----v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          552 KLRSTLAGHTGYVST-----VAVSP-DGSLCASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             CEEEEECCCSSCEEE-----EEECT-TSSEEEEEETTSBCEEEETTTTEEE
T ss_pred             cEEEEEcCCCCCEEE-----EEEeC-CCCEEEEEeCCCeEEEEECCCCceE
Confidence            888777 57776655     66777 7999999999999999999998765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.3e-34  Score=235.91  Aligned_cols=193  Identities=12%  Similarity=0.164  Sum_probs=163.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee---ecc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE---LAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~   77 (224)
                      +.+.++++|++|+.||+|+|||+.+++....+ +|...|++++|+|++ ++|++|+.|++|++||.........   ..+
T Consensus       437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  515 (694)
T 3dm0_A          437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEG  515 (694)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTS
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCC
Confidence            45677899999999999999999999888777 899999999999998 8999999999999999865543222   246


Q ss_pred             CCcCeEEEEEcCCCC--CeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351         78 NSGPFHAVMFNPVEA--RLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      |...|.+++|+| ++  ..+++++.|+.|++||+++.+....+.+|...|++++|+|++++|++++.|+.|++||+++++
T Consensus       516 h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          516 HRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             CSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            888999999999 54  689999999999999999988888888999999999999999999999999999999999998


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+..+.+...+     ..++|+| ++.++++++ ++.|++||+.+++.
T Consensus       595 ~~~~~~~~~~v-----~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          595 KLYSLEANSVI-----HALCFSP-NRYWLCAAT-EHGIKIWDLESKSI  635 (694)
T ss_dssp             EEECCBCSSCE-----EEEEECS-SSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             eEEEecCCCcE-----EEEEEcC-CCcEEEEEc-CCCEEEEECCCCCC
Confidence            87777544433     3466777 566666654 55688888887754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.9e-34  Score=215.21  Aligned_cols=192  Identities=13%  Similarity=0.168  Sum_probs=157.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce--eeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT--ELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~   78 (224)
                      +..+.+.++++|+.|++|++||+++++.+..+ +|...|++++|+|++ ++|++++.|++|++||+.......  ....|
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  161 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENH  161 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCC
Confidence            34567889999999999999999999988777 899999999999998 899999999999999997433221  12378


Q ss_pred             CcCeEEEEEcCCCC----------CeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         79 SGPFHAVMFNPVEA----------RLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        79 ~~~i~~~~~~~~~~----------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                      ...|.+++|+| .+          .++++++.|+.|++||. ..+....+..|...|.+++|+|+|++|++++.|+.|++
T Consensus       162 ~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~i  239 (343)
T 2xzm_R          162 SDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI  239 (343)
T ss_dssp             SSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             Cceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEE
Confidence            88999999999 54          78999999999999994 45566677789999999999999999999999999999


Q ss_pred             EECCC-CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        149 YNTRS-SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       149 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ||+.+ ..+...+.+...     +..++|+| ++.+++++ .|+.|++|++.+++.
T Consensus       240 wd~~~~~~~~~~~~~~~~-----v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          240 WDILNLTYPQREFDAGST-----INQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSK  288 (343)
T ss_dssp             EESSCCSSCSEEEECSSC-----EEEEEECS-SSCEEEEE-ESSCEEEEESSSCCS
T ss_pred             EECCCCcccceeecCCCc-----EEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCC
Confidence            99954 444444444443     34577888 57777655 578899999987754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.4e-33  Score=209.01  Aligned_cols=194  Identities=16%  Similarity=0.201  Sum_probs=169.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce--eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP--IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +..++++++++++.||.|++||+.+++.  ...+ .|...+.+++|+|++ +++++++.|+.|++||+++++.+..+..|
T Consensus       104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~  182 (337)
T 1gxr_A          104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence            3456788999999999999999998873  3333 789999999999998 89999999999999999999999999999


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      ...+.+++|+| ++.++++++.||.|++||+++++....+ .+...+.+++|+|+++++++++.++.|++||+++++...
T Consensus       183 ~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~  260 (337)
T 1gxr_A          183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             cCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence            99999999999 8899999999999999999988665554 577889999999999999999999999999999887654


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...|...+..     ++|+| ++++|++++.||.|++||+.+++..
T Consensus       261 ~~~~~~~v~~-----~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          261 LHLHESCVLS-----LKFAY-CGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             ECCCSSCEEE-----EEECT-TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EcCCccceeE-----EEECC-CCCEEEEecCCCcEEEEECCCCeEE
Confidence            4466666554     66777 7999999999999999999998775

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.9e-34  Score=229.92  Aligned_cols=184  Identities=19%  Similarity=0.319  Sum_probs=162.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ++++++++|++++.|+.|++||.. ++.+..+ +|...|++++|+|++ ++|++++.|++|++||. +++.+..+.+|..
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~  468 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNR-NGQLLQTLTGHSS  468 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TSCEEEEEECCSS
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC
Confidence            456788999999999999999965 4555544 899999999999998 89999999999999996 4667788899999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|.+++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+
T Consensus       469 ~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~  545 (577)
T 2ymu_A          469 SVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  545 (577)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred             CEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence            999999999 8999999999999999995 56678888899999999999999999999999999999996 56777777


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                       .|.+.+.+     ++|+| ++++|++++.|+.|++||
T Consensus       546 ~~h~~~v~~-----~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          546 TGHSSSVWG-----VAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ECCSSCEEE-----EEECT-TSSCEEEEETTSCEEEEC
T ss_pred             cCCCCCEEE-----EEEcC-CCCEEEEEeCCCEEEEeC
Confidence             67777665     66677 799999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.1e-33  Score=210.71  Aligned_cols=194  Identities=15%  Similarity=0.197  Sum_probs=170.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceee---EE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc--cce
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPID---FY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE--EAT   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~   73 (224)
                      +.++.++++++++ ||.|++||+.+++...   .+   +|...|.+++|+|++ ++|++++.|+.|++||+++++  ...
T Consensus        58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceee
Confidence            4567788999998 9999999998765332   22   688999999999998 899999999999999999877  556


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .+..|...|.+++|+| +++++++++.||.|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||+++
T Consensus       136 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence            6788899999999999 899999999999999999999988888888999999999999999999999999999999999


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.+..+.+...+..     ++|+| +++++++++.|+.|++||+.+++..
T Consensus       215 ~~~~~~~~~~~~v~~-----~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          215 GRQLQQHDFTSQIFS-----LGYCP-TGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             TEEEEEEECSSCEEE-----EEECT-TSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             CceEeeecCCCceEE-----EEECC-CCCEEEEEcCCCcEEEEECCCCCeE
Confidence            988887766665544     67777 7999999999999999999988754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=215.07  Aligned_cols=193  Identities=17%  Similarity=0.245  Sum_probs=164.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCC--CCceeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCcc--ccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMA--SGDPIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSRE--EATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~--~~~~   74 (224)
                      +.++.+++|++|+.||.|++||+.  +++.+..+ +|...|++++|+|+  + ++|++++.||.|++||+++++  .+..
T Consensus        18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~   96 (379)
T 3jrp_A           18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAV   96 (379)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeee
Confidence            566788999999999999999998  44555555 79999999999976  6 899999999999999999887  6777


Q ss_pred             eccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCc--eeeEeecCCCceeEEEEcC-------------CCCeE
Q psy11351         75 LAVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPK--EVLMQYGSCESCMSIRFNK-------------AGTQL  137 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l  137 (224)
                      +..|...|.+++|+| +  +.++++++.|+.|++||+++..  ....+..|...|.+++|+|             ++.++
T Consensus        97 ~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           97 HAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             ECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             ecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            788999999999999 6  8999999999999999998773  3445567999999999999             69999


Q ss_pred             eeeecCCCcEEEECCCCCcce----ec-ccCCcccceeeeEEEEeCCC---CeEEEEcCCCCeEEEEeCCCCC
Q psy11351        138 LGLRRRLPPVLYNTRSSSPVA----QF-DHEGYYNSCTMKSCCFAGTQ---DEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ++++.|+.|++||++++....    .+ .|...+.     .++|+| +   +.+|++++.||.|++||+.+++
T Consensus       176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~-----~~~~sp-~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR-----DVAWSP-TVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE-----EEEECC-CCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEe-----EEEECC-CCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            999999999999998775432    33 3555544     467777 6   8999999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.7e-34  Score=221.27  Aligned_cols=200  Identities=12%  Similarity=0.104  Sum_probs=170.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      +.++.+++|++++.||.|++||+.+++....+.....+....|+|++ ++|++|+.|+.|++||+++++....+..|...
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~  141 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQREIDQAHVSE  141 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEEEEETTSSSSC
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCC-CEEEEEECCCCEEEEeCCCcceeeecccccCc
Confidence            45667889999999999999999987766655333555555788988 89999999999999999999888888899999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~  161 (224)
                      |.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       142 v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          142 ITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence            99999999 88999999999999999999998888888999999999999999999999999999999999998887773


Q ss_pred             ----cCCcccceee----------------eEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        162 ----HEGYYNSCTM----------------KSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       162 ----~~~~~~~~~~----------------~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                          +...+..+.+                ..++|+| ++++|++|+.||.|++||+++++..
T Consensus       221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             cCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCcee
Confidence                2222322222                2245666 7999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.8e-33  Score=212.57  Aligned_cols=195  Identities=11%  Similarity=0.124  Sum_probs=165.5

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee--ec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE--LA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~   76 (224)
                      +.++++++|++++.|+.|++||+.+++  .+..+ +|...|++++|+|++ ++|++++.|+.|++||+++++....  +.
T Consensus        15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence            456788999999999999999999886  56655 799999999999998 8999999999999999988764433  46


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEe-ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQ-YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      .|...|.+++|+| +++++++++.|+.|++||++..+.   ...+ ..|...|.+++|+|++++|++++.|+.|++||++
T Consensus        94 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C           94 RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             cCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            7888999999999 889999999999999999998763   2222 3578999999999999999999999999999964


Q ss_pred             ------------------CCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        153 ------------------SSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                        .++.+..+ .|.+.+.     .++|+| ++++|++++.|+.|++||+++++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          173 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH-----GVCFSA-NGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE-----EEEECS-SSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cccccccccccccccccchhhheEecCCCCCeEE-----EEEECC-CCCEEEEEeCCCEEEEEECCCCcee
Confidence                              45566666 4555544     467777 7899999999999999999988765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.9e-33  Score=215.07  Aligned_cols=195  Identities=13%  Similarity=0.087  Sum_probs=165.0

Q ss_pred             CCCCcc-eEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          2 ASGDPI-KVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         2 a~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      +.++.+ ++|++|+.||+|++||+.+++....+   +|...|.+++|+|++.++|++++.|+.|++||++. +....+..
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  158 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAK  158 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEEC
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEec
Confidence            345566 89999999999999999988877665   59999999999994338999999999999999986 44444443


Q ss_pred             ---CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCC-eEeeeecCCCcEEEECCC
Q psy11351         78 ---NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT-QLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        78 ---~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v~d~~~  153 (224)
                         |...|.+++|+| ++.++++++.|+.|++||++ ++....+..|...|.+++|+|+++ ++++++.|+.|++||+++
T Consensus       159 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          159 TDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             cCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence               447899999999 88999999999999999995 667788888999999999999999 899999999999999987


Q ss_pred             ----CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 ----SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                          +..+..+.|...+.     .++|+|.++.+|++++.|+.|++||+++++..
T Consensus       237 ~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          237 IKDKNSYIAEMPHEKPVN-----AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP  286 (383)
T ss_dssp             CCSTTCEEEEEECSSCEE-----EEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred             CCcccceEEEecCCCceE-----EEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence                44555555655544     47888845899999999999999999987663

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.5e-33  Score=215.46  Aligned_cols=188  Identities=15%  Similarity=0.254  Sum_probs=161.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCc----eeeEE-eccCCeeEEEEcC-CCCcEEEEecCCCEEEEEecCCc-------ccceee
Q psy11351          9 VLRVIGNDDHVISHDMASGD----PIDFY-LHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSR-------EEATEL   75 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~----~~~~~-~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~   75 (224)
                      ++++++.||.|+||++....    .+..+ +|.+.|++++|+| ++ ++|++|+.||+|++||+.++       +++..+
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~  127 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITL  127 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence            45567899999999996542    23333 8999999999999 66 89999999999999999987       567788


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe--ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ--YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .+|...|.+++|+|++..++++++.|+.|++||+++++....+  ..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence            8999999999999933479999999999999999999888888  67999999999999999999999999999999999


Q ss_pred             CCcceec--ccCCc-ccceeeeEEEEeCCCCeEEEEc---CCCCeEEEEeCCCCCe
Q psy11351        154 SSPVAQF--DHEGY-YNSCTMKSCCFAGTQDEYVVSG---SDDFVLYMWRVPRDDI  203 (224)
Q Consensus       154 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~s~---~~d~~v~iw~~~~~~~  203 (224)
                      ++.+..+  .|.+. +.     .+.|+| ++.+|++|   +.|+.|++||+++++.
T Consensus       208 ~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          208 GTVVAEKDRPHEGTRPV-----HAVFVS-EGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TEEEEEEECSSCSSSCC-----EEEECS-TTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             CceeeeeccCCCCCcce-----EEEEcC-CCcEEEEeccCCCCceEEEEcCccccC
Confidence            9888776  34443 33     367777 79999999   8999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-34  Score=227.77  Aligned_cols=186  Identities=11%  Similarity=0.084  Sum_probs=157.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCcee-----------eEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cce
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPI-----------DFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EAT   73 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~   73 (224)
                      +.+||+++.||+|+|||+.+++..           ..+ +|...|++++|+|+  ..|++|+.||+|++||+++++ +..
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~  302 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSF  302 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceE
Confidence            679999999999999999876421           233 79999999999985  489999999999999999764 455


Q ss_pred             eeccCCcCeEEE--EEcCCCC-CeEEEecCCCcEEEEecCCCceeeEeecCC--CceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         74 ELAVNSGPFHAV--MFNPVEA-RLVATANSKDGIALYDTRKPKEVLMQYGSC--ESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        74 ~~~~~~~~i~~~--~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                      .+.+|...|.++  .|+| ++ .+|++++.|++|+|||+++++.+..+.+|.  ..|.+++|+|+++.+++++.|++|++
T Consensus       303 ~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l  381 (524)
T 2j04_B          303 YDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA  381 (524)
T ss_dssp             EEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred             EeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence            688999999999  5677 66 899999999999999999887666666554  35889999999999999999999999


Q ss_pred             EECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        149 YNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       149 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      ||++++..+..+ .|.+.|++     ++|+| ++++|++|+.|++|++||+..+
T Consensus       382 wd~~~~~~~~~l~gH~~~V~s-----va~Sp-~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          382 VPSRAAFAVHPLVSRETTITA-----IGVSR-LHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EETTCTTCCEEEEECSSCEEE-----EECCS-SCCBCEEEETTTEEECCBSCSS
T ss_pred             EECcccccceeeecCCCceEE-----EEeCC-CCCeEEEEECCCEEEEEechHh
Confidence            999998887776 67777665     56666 7999999999999999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-33  Score=214.57  Aligned_cols=188  Identities=12%  Similarity=0.148  Sum_probs=162.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcC-CCCcEEEEecCCCEEEEEecCCcccceee---ccCCcC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATEL---AVNSGP   81 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~   81 (224)
                      +++|++|+.||.|++||+.+++.+..+ +|...|.+++|+| ++ ++|++++.||.|++||+++++.+..+   ..|...
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            689999999999999999999988877 6999999999999 66 89999999999999999999888777   689999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee----------------------------cCCCceeEEEEcCC
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY----------------------------GSCESCMSIRFNKA  133 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~  133 (224)
                      |.+++|+| ++.++++++.||.|++||+++++....+.                            .|...|.+++|+  
T Consensus       164 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          164 VLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             eeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            99999999 88999999999999999999765433222                            288999999999  


Q ss_pred             CCeEeeeecCCCcEEEECCCCCc--------------ceec-ccCCcccceeeeEEEEeCCC--CeEEEEcCCCCeEEEE
Q psy11351        134 GTQLLGLRRRLPPVLYNTRSSSP--------------VAQF-DHEGYYNSCTMKSCCFAGTQ--DEYVVSGSDDFVLYMW  196 (224)
Q Consensus       134 ~~~l~~~~~d~~v~v~d~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~v~iw  196 (224)
                      ++++++++.|+.|++||+++++.              +..+ .|...+..+.+.+      +  +++|++|+.||.|++|
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~l~~~~~dg~i~vw  314 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM------DFWQKMLALGNQVGKLYVW  314 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE------CTTSSEEEEECTTSCEEEE
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC------CCCCcEEEEEecCCcEEEE
Confidence            78999999999999999987654              3333 3566666655554      7  8999999999999999


Q ss_pred             eCCCCCeE
Q psy11351        197 RVPRDDIY  204 (224)
Q Consensus       197 ~~~~~~~~  204 (224)
                      |+.+++..
T Consensus       315 d~~~~~~~  322 (366)
T 3k26_A          315 DLEVEDPH  322 (366)
T ss_dssp             ECCSSSGG
T ss_pred             ECCCCCCc
Confidence            99998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=209.41  Aligned_cols=194  Identities=13%  Similarity=0.161  Sum_probs=168.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++.+++|++++.||.|++||+.+++.+..+ +|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. +..
T Consensus        39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  116 (369)
T 3zwl_B           39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQCVATWK-SPV  116 (369)
T ss_dssp             EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEE-CSS
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-cCC
Confidence            45678899999999999999999999988888 799999999999998 899999999999999999999888877 788


Q ss_pred             CeEEEEEcCCCCCeEEEecCC-----CcEEEEecCCCce-----------eeEeecCCC--ceeEEEEcCCCCeEeeeec
Q psy11351         81 PFHAVMFNPVEARLVATANSK-----DGIALYDTRKPKE-----------VLMQYGSCE--SCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~-----------~~~~~~~~~--~v~~~~~~~~~~~l~~~~~  142 (224)
                      .+.+++|+| ++.++++++.+     +.|++||++....           ...+..+..  .+.+++|+|++++|++++.
T Consensus       117 ~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  195 (369)
T 3zwl_B          117 PVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK  195 (369)
T ss_dssp             CEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET
T ss_pred             CeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC
Confidence            999999999 88999999998     9999999986532           233334555  8999999999999999999


Q ss_pred             CCCcEEEECCC-CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        143 RLPPVLYNTRS-SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       143 d~~v~v~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      |+.|++||+++ ++.+..+ .|...+.+     ++|+| ++.+|++++.|+.|++||+.+++..
T Consensus       196 dg~i~i~d~~~~~~~~~~~~~~~~~v~~-----~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          196 DGKISKYDVSNNYEYVDSIDLHEKSISD-----MQFSP-DLTYFITSSRDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             TSEEEEEETTTTTEEEEEEECCSSCEEE-----EEECT-TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCcEeEEEEecCCCceeE-----EEECC-CCCEEEEecCCceEEEEECCCCcee
Confidence            99999999998 5666666 46665544     67777 7999999999999999999998775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.7e-34  Score=213.29  Aligned_cols=189  Identities=13%  Similarity=0.144  Sum_probs=154.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCccc---ceeeccC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSREE---ATELAVN   78 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~   78 (224)
                      +++|++|+.|++|++||+++++  ....+ +|...|++++|+|+  + .+|++|+.|++|++||++.+..   ...+.+|
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            7899999999999999999874  33444 79999999999998  5 7999999999999999987632   4556788


Q ss_pred             CcCeEEEEEcCCC----------------CCeEEEecCCCcEEEEecCCC---ceeeEeecCCCceeEEEEcCCC----C
Q psy11351         79 SGPFHAVMFNPVE----------------ARLVATANSKDGIALYDTRKP---KEVLMQYGSCESCMSIRFNKAG----T  135 (224)
Q Consensus        79 ~~~i~~~~~~~~~----------------~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~----~  135 (224)
                      ...+.+++|+|..                +.+|++|+.|+.|++||++..   +....+.+|...|.+++|+|++    +
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            9999999999931                468999999999999999755   3445566899999999999986    7


Q ss_pred             eEeeeecCCCcEEEECCCCC---c-ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        136 QLLGLRRRLPPVLYNTRSSS---P-VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       136 ~l~~~~~d~~v~v~d~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +|++++.|++|++|++++..   . ...+ .|.+.+.     .++|+| ++++|++++.|+.|++|+.....
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~-----~v~~sp-~g~~las~~~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVW-----HVSWSI-TANILAVSGGDNKVTLWKESVDG  295 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEE-----EEEECT-TTCCEEEEESSSCEEEEEECTTS
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEE-----EEEEcC-CCCEEEEEcCCCeEEEEEECCCC
Confidence            89999999999999997631   1 1222 3544444     477888 79999999999999999987443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-32  Score=222.07  Aligned_cols=190  Identities=19%  Similarity=0.308  Sum_probs=165.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +..++++++++++.|++|++||.. ++.+..+ +|...|.+++|+|++ ++|++++.|+.|++||. +++.+..+.+|..
T Consensus       351 ~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~  427 (577)
T 2ymu_A          351 AFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSS  427 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEEECCSS
T ss_pred             EECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEecCCCC
Confidence            456788999999999999999965 4555544 899999999999998 89999999999999995 5677888899999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|.+++|+| +++++++++.|+.|++||.. ++....+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+
T Consensus       428 ~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~  504 (577)
T 2ymu_A          428 SVWGVAFSP-DDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  504 (577)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             CeEEEEECC-CCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence            999999999 88999999999999999964 5577788889999999999999999999999999999995 56777777


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .|...+++     ++|+| ++++|++++.|+.|++||. +++..
T Consensus       505 ~~h~~~v~~-----l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~  542 (577)
T 2ymu_A          505 TGHSSSVRG-----VAFSP-DGQTIASASDDKTVKLWNR-NGQLL  542 (577)
T ss_dssp             ECCSSCEEE-----EEECT-TSSCEEEEETTSEEEEECT-TSCEE
T ss_pred             eCCCCCEEE-----EEEcC-CCCEEEEEECcCEEEEEeC-CCCEE
Confidence             57766654     66777 7999999999999999996 45443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.4e-33  Score=215.69  Aligned_cols=199  Identities=14%  Similarity=0.125  Sum_probs=148.3

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeE-----E-eccCCeeEEEEcC--------CCCcEEEEecCCCEEEEEecCCcc
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDF-----Y-LHERPVYGLSVDP--------SQDAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~-~~~~~v~~~~~~~--------~~~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      ..+.++++++.|++|+|||.++++....     + +|.+.|++++|+|        ++ ++|++|+.|++|+|||++++.
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc
Confidence            3456899999999999999998865432     2 7999999999997        66 899999999999999999888


Q ss_pred             cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-------------------------ecCCCce
Q psy11351         71 EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-------------------------YGSCESC  125 (224)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-------------------------~~~~~~v  125 (224)
                      +...+..|...+.+++|+|.+..+|++++.|+.|++||+++++.....                         .+|...+
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            888888899999999999955578999999999999999876543221                         2467788


Q ss_pred             eEEEEc-CCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceee-------------eEEEEeC-CCCeEEEEcCC
Q psy11351        126 MSIRFN-KAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTM-------------KSCCFAG-TQDEYVVSGSD  189 (224)
Q Consensus       126 ~~~~~~-~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~-~~~~~l~s~~~  189 (224)
                      .++.|+ |+++.+++++.|+.+++||+..++....+ .+...+..+.+             ..++|+| .++.++++|+.
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence            899986 79999999999999999999877665554 23222222111             1134444 34557788999


Q ss_pred             CCeEEEEeCCCCCeE
Q psy11351        190 DFVLYMWRVPRDDIY  204 (224)
Q Consensus       190 d~~v~iw~~~~~~~~  204 (224)
                      ||.|++||+.+++..
T Consensus       338 Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          338 HGLIQLINTYEKDSN  352 (393)
T ss_dssp             TTEEEEEETTCTTCC
T ss_pred             CCEEEEEECCCCcEE
Confidence            999999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=213.74  Aligned_cols=198  Identities=13%  Similarity=0.220  Sum_probs=166.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCC----CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMAS----GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE------   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------   70 (224)
                      +.++++++|++++.||.|++||+.+    .+.+..+ +|...|++++|+|++.++|++++.|+.|++||+++++      
T Consensus        74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence            4566788999999999999999987    3355555 8999999999999844899999999999999999876      


Q ss_pred             cce---eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC------CCceeEEEEcCCC-CeEeee
Q psy11351         71 EAT---ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS------CESCMSIRFNKAG-TQLLGL  140 (224)
Q Consensus        71 ~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~  140 (224)
                      ...   .+..|...|.+++|+|+++.++++++.|+.|++||+++++....+..+      ...+.+++|+|++ .+++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence            322   236788999999999944899999999999999999998877777665      7899999999997 588999


Q ss_pred             ecCC---CcEEEECCCC-Ccceecc--cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        141 RRRL---PPVLYNTRSS-SPVAQFD--HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       141 ~~d~---~v~v~d~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+   .|++||++++ +++..+.  |...+     ..++|+|.++.+|++++.|+.|++||+.+++..
T Consensus       234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGI-----LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL  298 (416)
T ss_dssp             ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE-----EEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred             ECCCCCceEEEEeCCCCCCCcEEeecCccCce-----eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence            9998   9999999986 4555553  54444     447888866899999999999999999998775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-31  Score=207.88  Aligned_cols=188  Identities=14%  Similarity=0.189  Sum_probs=165.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +.+++++.|+.|++||+.+++....+  .|...|++++|+|++ ++|++|+.||.|++||+.+++.+..+..|...|.++
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            45788889999999999999988776  479999999999998 899999999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCC-CceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRK-PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHE  163 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~  163 (224)
                      +|++   .++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.|+.|++||+++++++..+ .|.
T Consensus       183 ~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  259 (401)
T 4aez_A          183 SWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN  259 (401)
T ss_dssp             EEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred             EECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence            9954   6999999999999999994 5556677789999999999999999999999999999999998888777 566


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcC--CCCeEEEEeCCCCCeE
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGS--DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~v~iw~~~~~~~~  204 (224)
                      ..+.+     ++|+|.+..++++++  .|+.|++||+.+++..
T Consensus       260 ~~v~~-----~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          260 AAVKA-----VAWCPWQSNLLATGGGTMDKQIHFWNAATGARV  297 (401)
T ss_dssp             SCCCE-----EEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred             ceEEE-----EEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence            66554     777775567777765  8999999999998775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-32  Score=210.49  Aligned_cols=193  Identities=15%  Similarity=0.171  Sum_probs=167.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC-CcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR-SREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~   79 (224)
                      +.++++++|++|+.||.|++||+.+++.+..+ +|...|.+++|+  + +++++++.|+.|++||++ .+.....+..|.
T Consensus       141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  217 (401)
T 4aez_A          141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHS  217 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCC
Confidence            45667889999999999999999999988877 899999999995  3 699999999999999998 455677888999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEe-eee--cCCCcEEEECCCCCc
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL-GLR--RRLPPVLYNTRSSSP  156 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~d~~v~v~d~~~~~~  156 (224)
                      ..|.+++|+| ++.++++++.|+.|++||+++++....+..|...|.+++|+|++..++ +++  .|+.|++||+++++.
T Consensus       218 ~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          218 SEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            9999999999 899999999999999999999888888888999999999999876554 443  699999999999998


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEE--cCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVS--GSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~v~iw~~~~~~~~  204 (224)
                      +..+.+...+.     .++|+| ++.++++  |+.||.|++||+.+++..
T Consensus       297 ~~~~~~~~~v~-----~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          297 VNTVDAGSQVT-----SLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             EEEEECSSCEE-----EEEECS-SSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             EEEEeCCCcEE-----EEEECC-CCCeEEEEeecCCCcEEEEecCCccce
Confidence            88886655544     467777 6888888  668999999999987654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=204.59  Aligned_cols=186  Identities=17%  Similarity=0.215  Sum_probs=150.0

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee----------
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE----------   74 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------   74 (224)
                      ++||+|. |++|+|||+++++++..+   +|...|++++|+|++ ++|++|+.|++|++||+++++.+..          
T Consensus        37 ~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~  114 (318)
T 4ggc_A           37 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  114 (318)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence            4677664 999999999999988776   578899999999998 8999999999999999987764432          


Q ss_pred             -------------------------------eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceee----Ee-
Q psy11351         75 -------------------------------LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL----MQ-  118 (224)
Q Consensus        75 -------------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----~~-  118 (224)
                                                     +.+|...+..+.+.+ .++++++++.|+.|++||+++++...    .. 
T Consensus       115 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  193 (318)
T 4ggc_A          115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT  193 (318)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC
T ss_pred             eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeec
Confidence                                           235566778888888 88999999999999999998643110    00 


Q ss_pred             -------------------------------------------ecCCCceeEEEEcCCCCeEeeee--cCCCcEEEECCC
Q psy11351        119 -------------------------------------------YGSCESCMSIRFNKAGTQLLGLR--RRLPPVLYNTRS  153 (224)
Q Consensus       119 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~v~d~~~  153 (224)
                                                                 ..+...+..+.|+|+++.+++++  .|+.|++||+++
T Consensus       194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence                                                       01334567788888888777654  789999999999


Q ss_pred             CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        154 SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ++++..+ .|.+.|.+     ++|+| ++++|++|+.||+|++||+.+.+
T Consensus       274 ~~~~~~l~gH~~~V~~-----l~~sp-dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          274 MAKVAELKGHTSRVLS-----LTMSP-DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CCEEEEECCCSSCEEE-----EEECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred             CcEEEEEcCCCCCEEE-----EEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence            9999988 57777665     66677 79999999999999999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.8e-32  Score=213.75  Aligned_cols=189  Identities=12%  Similarity=0.152  Sum_probs=165.0

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +++++++|+.||+|++||+.+++.+..+ +|.+.|++++|+|++  .+++|+.||+|++||+++++.+..+.+|...|.+
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~  208 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC  208 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE
Confidence            4568999999999999999999988887 899999999999976  8999999999999999999999999999999999


Q ss_pred             EEEcC-CCCCeEEEecCCCcEEEEecCCCce-----------------------eeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         85 VMFNP-VEARLVATANSKDGIALYDTRKPKE-----------------------VLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        85 ~~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      ++|++ .++.++++++.|+.|++||+++...                       .....+|...+.++  ++++++++++
T Consensus       209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~  286 (464)
T 3v7d_B          209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSG  286 (464)
T ss_dssp             EEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEE
T ss_pred             EEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEE
Confidence            99984 1678999999999999999987653                       22344677777766  6778999999


Q ss_pred             ecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        141 RRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+.|++||+++++.+..+ .|...+.+     ++|+| +++++++|+.|+.|++||+.+++..
T Consensus       287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          287 SYDNTLIVWDVAQMKCLYILSGHTDRIYS-----TIYDH-ERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEE-----EEEET-TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             eCCCeEEEEECCCCcEEEEecCCCCCEEE-----EEEcC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            99999999999999988888 46666554     66677 7999999999999999999998765

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-33  Score=217.52  Aligned_cols=199  Identities=14%  Similarity=0.182  Sum_probs=161.4

Q ss_pred             CCCC-cceEEEEEeCCCcEEEEeCCC---Cc---eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC---Cccc
Q psy11351          2 ASGD-PIKVLRVIGNDDHVISHDMAS---GD---PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR---SREE   71 (224)
Q Consensus         2 a~~~-~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~   71 (224)
                      +..+ ++++|++|+.||+|++||+.+   +.   ....++|...|++++|+|++ ++|++|+.||+|++||++   +++.
T Consensus        70 ~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~  148 (437)
T 3gre_A           70 AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESE  148 (437)
T ss_dssp             EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTE
T ss_pred             EECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCce
Confidence            3455 788999999999999999876   43   34455899999999999998 899999999999999995   4443


Q ss_pred             ceeecc------------CCcCeEEEE--EcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCC
Q psy11351         72 ATELAV------------NSGPFHAVM--FNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGT  135 (224)
Q Consensus        72 ~~~~~~------------~~~~i~~~~--~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~  135 (224)
                      ...+..            +...+.++.  +++ ++.++++++.|+.|++||+++++....+..  |...|++++|+|+++
T Consensus       149 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  227 (437)
T 3gre_A          149 VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC  227 (437)
T ss_dssp             EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC
T ss_pred             eeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC
Confidence            332221            445566666  556 789999999999999999999988888887  889999999999999


Q ss_pred             eEeeeecCCCcEEEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        136 QLLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       136 ~l~~~~~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +|++++.|+.|++||+++++++..+  .+...+.++.+.+ .|+| ++.+|++|+.|+.|++||+++++..
T Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~  296 (437)
T 3gre_A          228 VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ-FYGK-NSVIVVGGSSKTFLTIWNFVKGHCQ  296 (437)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT-TTCT-TEEEEEEESTTEEEEEEETTTTEEE
T ss_pred             EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc-ccCC-CccEEEEEcCCCcEEEEEcCCCcEE
Confidence            9999999999999999999888876  4444444432211 3334 6789999999999999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=205.86  Aligned_cols=187  Identities=8%  Similarity=0.058  Sum_probs=153.3

Q ss_pred             EEEEeCCCcEEEEeCC---------CCceeeEE--eccCCeeEEEEcC--CCCcEEEEecCCCEEEEEecCCcccceeec
Q psy11351         10 LRVIGNDDHVISHDMA---------SGDPIDFY--LHERPVYGLSVDP--SQDAIFASACDDGRVLLFDTRSREEATELA   76 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~---------~~~~~~~~--~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   76 (224)
                      +++++.|++|++|+..         +++.+...  +|...|.+++|+|  ++ +++++++.|++|++||+++++......
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~  166 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHS  166 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            8999999999999765         44444433  6778999999999  88 899999999999999999998766553


Q ss_pred             -cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee-eEeec-CCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         77 -VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV-LMQYG-SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        77 -~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                       .+...+.+++|+| ++.++++|+.||.|++||+++++.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++
T Consensus       167 ~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~  244 (343)
T 3lrv_A          167 AKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK  244 (343)
T ss_dssp             CCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred             cCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence             4455899999999 8999999999999999999998876 66776 999999999999999999999 45999999999


Q ss_pred             CCcceecc----cCCcccceeeeEEEEeCCCCeEEEEcCC-CCeEEEEeCCCCCe
Q psy11351        154 SSPVAQFD----HEGYYNSCTMKSCCFAGTQDEYVVSGSD-DFVLYMWRVPRDDI  203 (224)
Q Consensus       154 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~v~iw~~~~~~~  203 (224)
                      ++....+.    +...+..   ..++|+| ++++|++++. |+.+++|++.+...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~---~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          245 DVGTLAYPTYTIPEFKTGT---VTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             STTCBSSCCCBC-----CC---EEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCcceeecccccccccccc---eEEEECC-CCCEEEEecCCCCcEEEEEEccccc
Confidence            88766652    2222222   3488888 6999999888 99999999966543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.7e-33  Score=214.53  Aligned_cols=189  Identities=14%  Similarity=0.154  Sum_probs=163.4

Q ss_pred             CcceE-EEEEeCCCcEEEEeCCC------Cceee-----EE-e-------ccCCeeEEEEcCCCCcEEEEecCCCEEEEE
Q psy11351          5 DPIKV-LRVIGNDDHVISHDMAS------GDPID-----FY-L-------HERPVYGLSVDPSQDAIFASACDDGRVLLF   64 (224)
Q Consensus         5 ~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~-~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw   64 (224)
                      ..+++ |++++.||.|++||+.+      ++.+.     .+ +       |...|.+++|+|++  ++++++.|+.|++|
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS  212 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEE
Confidence            56788 99999999999999988      65554     44 3       78999999999987  99999999999999


Q ss_pred             ecCCcccceeecc---C---CcCeEEEEEcCCCCCeEEEecCC---CcEEEEecCCCceeeEeec-------------CC
Q psy11351         65 DTRSREEATELAV---N---SGPFHAVMFNPVEARLVATANSK---DGIALYDTRKPKEVLMQYG-------------SC  122 (224)
Q Consensus        65 d~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~-------------~~  122 (224)
                      |+++++.+..+..   |   ...|.+++|+| ++.+|++++.|   +.|++||+++++.+..+..             |.
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            9999998888888   8   99999999999 89999999999   9999999999988888877             89


Q ss_pred             CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-------c---------------CCcccceeeeEEEEeCCC
Q psy11351        123 ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-------H---------------EGYYNSCTMKSCCFAGTQ  180 (224)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-------~---------------~~~~~~~~~~~~~~~~~~  180 (224)
                      ..|.+++|+|++++|++++.|+.|++||+++++.+..+.       |               ...     +..++|+| +
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----v~~~~~~~-~  365 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-----VFDVKFLK-K  365 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----EEEEEEEC-T
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc-----eeEEEecc-c
Confidence            999999999999999999999999999999998887774       2               333     44577887 5


Q ss_pred             C----------eEEEEcCCCCeEEEEeCCCCC
Q psy11351        181 D----------EYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       181 ~----------~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +          ++|++++.||.|++|++.+++
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            6          799999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-32  Score=206.94  Aligned_cols=191  Identities=10%  Similarity=0.195  Sum_probs=159.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCccc--ceeeccCC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSREE--ATELAVNS   79 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~   79 (224)
                      +++|++++.||.|++||+.+++  .+..+ .|...|.+++|+|+  + .+|++++.|+.|++||++++..  ...+..|.
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence            7899999999999999999986  44444 79999999999999  7 8999999999999999988743  44567889


Q ss_pred             cCeEEEEEcCC------------CCCeEEEecCCCcEEEEecCCCce----eeEeecCCCceeEEEEcCC---CCeEeee
Q psy11351         80 GPFHAVMFNPV------------EARLVATANSKDGIALYDTRKPKE----VLMQYGSCESCMSIRFNKA---GTQLLGL  140 (224)
Q Consensus        80 ~~i~~~~~~~~------------~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~l~~~  140 (224)
                      ..|.+++|+|.            ++.++++++.||.|++||++++..    ...+..|...|.+++|+|+   +++|+++
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            99999999994            488999999999999999987653    2345579999999999999   8999999


Q ss_pred             ecCCCcEEEECCCCCcce---ecc---cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        141 RRRLPPVLYNTRSSSPVA---QFD---HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+.|++||++++....   ...   +...     +..++|+| ++++|++++.||.|++|++..+..+
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSL-SGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECS-SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             eCCCEEEEEeCCCCCccceeeeeccccCCCc-----EEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCcc
Confidence            999999999998864221   111   3333     34577888 7999999999999999999866554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-33  Score=215.08  Aligned_cols=195  Identities=21%  Similarity=0.239  Sum_probs=167.8

Q ss_pred             CCCc-ceEEEEEeCCCcEEEEeCCCCc------eeeE----EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc
Q psy11351          3 SGDP-IKVLRVIGNDDHVISHDMASGD------PIDF----YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE   71 (224)
Q Consensus         3 ~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~   71 (224)
                      ..+. +++|++++.||+|++||+.+++      ....    ..|...|.+++|+|++..+|++++.|+.|++||+++++.
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            3444 7899999999999999999876      3222    278999999999999558999999999999999999988


Q ss_pred             ceeeccC------CcCeEEEEEcCCCCCeEEEecCCC---cEEEEecCCC-ceeeEee-cCCCceeEEEEcC-CCCeEee
Q psy11351         72 ATELAVN------SGPFHAVMFNPVEARLVATANSKD---GIALYDTRKP-KEVLMQY-GSCESCMSIRFNK-AGTQLLG  139 (224)
Q Consensus        72 ~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~  139 (224)
                      +..+..+      ...|.+++|+|++..++++++.|+   .|++||+++. .....+. .|...|.+++|+| ++++|++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence            8887766      788999999994457999999998   9999999986 4455555 7999999999999 8999999


Q ss_pred             eecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCC-eEEEEcCCCCeEEEEeCCCCCe
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQD-EYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++.|+.|++||+++++++..+ .|...+.+     ++|+| ++ .+|++++.|+.|++||+.+++.
T Consensus       281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLSQFPARGNWCFK-----TKFAP-EAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EESSSEEEEECSSSCCEEEEEECSSSCCCC-----EEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             EeCCCCEEEeeCCCCccceeecCCCCceEE-----EEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999999999999988888 57777665     66777 56 8999999999999999998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-32  Score=212.62  Aligned_cols=196  Identities=12%  Similarity=0.083  Sum_probs=166.7

Q ss_pred             CCCCcceEE-EEEeCCCcEEEEeCC--CCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce--
Q psy11351          2 ASGDPIKVL-RVIGNDDHVISHDMA--SGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT--   73 (224)
Q Consensus         2 a~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--   73 (224)
                      +.++.+++| ++++.||+|++||+.  +++.+..+   .|...|++++|+|++ ++|++|+.|+.+++|++.+++...  
T Consensus       109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred             EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCccccccc
Confidence            456778885 899999999999999  88877766   577899999999998 899999999999999998877554  


Q ss_pred             --eeccCCcCeEEEEEcCCC---CCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcE
Q psy11351         74 --ELAVNSGPFHAVMFNPVE---ARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        74 --~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  147 (224)
                        .+.+|...|.+++|+| +   +.+|++++.|+.|++||+++++.+.. ..+|...|.+++|+ ++++|++++.|+.|+
T Consensus       188 ~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~  265 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF  265 (450)
T ss_dssp             CCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred             ceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence              7788999999999999 7   88999999999999999998877766 44799999999999 999999999999999


Q ss_pred             EEECCCCCcceecccCCc---------------------ccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeC--CCC
Q psy11351        148 LYNTRSSSPVAQFDHEGY---------------------YNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRV--PRD  201 (224)
Q Consensus       148 v~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~--~~~  201 (224)
                      +||+++++.+..+.....                     .....+..++|+| ++++|++++ .|+.|++|++  .++
T Consensus       266 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          266 AWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             EEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSST
T ss_pred             EEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCC
Confidence            999999988776632110                     1223456788888 688888887 8999999999  444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-32  Score=210.89  Aligned_cols=188  Identities=15%  Similarity=0.158  Sum_probs=162.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce-----eeEE-ec-----cCCeeEEEEc----CCCCcE-EEEecCCCEEEEEecCC---
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP-----IDFY-LH-----ERPVYGLSVD----PSQDAI-FASACDDGRVLLFDTRS---   68 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~-----~~~~-~~-----~~~v~~~~~~----~~~~~~-l~s~~~d~~i~iwd~~~---   68 (224)
                      ++|++++.||.|++||+.+++.     ...+ .|     ...|.+++|+    |++ ++ |++++.|+.|++||+++   
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccc
Confidence            8999999999999999998875     5555 67     5999999999    998 78 99999999999999998   


Q ss_pred             ---cccce-----ee-------ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec---C---CCceeE
Q psy11351         69 ---REEAT-----EL-------AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---S---CESCMS  127 (224)
Q Consensus        69 ---~~~~~-----~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~---~~~v~~  127 (224)
                         ++.+.     .+       ..|...|.+++|+| ++ ++++++.||.|++||+++++....+..   |   ...+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence               77666     66       34888999999999 77 999999999999999999988888887   8   999999


Q ss_pred             EEEcCCCCeEeeeecC---CCcEEEECCCCCcceec-c-------------cCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        128 IRFNKAGTQLLGLRRR---LPPVLYNTRSSSPVAQF-D-------------HEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d---~~v~v~d~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      ++|+|++++|++++.|   +.|++||+++++.+..+ .             |...+.     .++|+| ++++|++++.|
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~-~~~~l~~~~~d  312 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM-----SLSFND-SGETLCSAGWD  312 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE-----EEEECS-SSSEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE-----EEEECC-CCCEEEEEeCC
Confidence            9999999999999999   99999999999888877 3             455444     467777 79999999999


Q ss_pred             CeEEEEeCCCCCeE
Q psy11351        191 FVLYMWRVPRDDIY  204 (224)
Q Consensus       191 ~~v~iw~~~~~~~~  204 (224)
                      +.|++||+.+++..
T Consensus       313 g~i~iwd~~~~~~~  326 (397)
T 1sq9_A          313 GKLRFWDVKTKERI  326 (397)
T ss_dssp             SEEEEEETTTTEEE
T ss_pred             CeEEEEEcCCCcee
Confidence            99999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.9e-33  Score=211.44  Aligned_cols=188  Identities=13%  Similarity=0.153  Sum_probs=159.8

Q ss_pred             CCC-cceEEEEEeCCCcEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          3 SGD-PIKVLRVIGNDDHVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         3 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      ..+ .+++|++++.||+|++||+.+++.+..+    +|...|.+++|+|++ ++|++++.|+.|++||+++++....+..
T Consensus       123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccce
Confidence            344 6789999999999999999999888776    699999999999998 8999999999999999998876554443


Q ss_pred             ----------------------------CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce--------------e
Q psy11351         78 ----------------------------NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE--------------V  115 (224)
Q Consensus        78 ----------------------------~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--------------~  115 (224)
                                                  |...|.+++|+   ++++++++.|+.|++||+++.+.              .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence                                        88999999998   46999999999999999987644              5


Q ss_pred             eEeecCCCceeEEEEcCC--CCeEeeeecCCCcEEEECCCCCcce----ec-cc--CCcccceeeeEEEEeCCCCeEEEE
Q psy11351        116 LMQYGSCESCMSIRFNKA--GTQLLGLRRRLPPVLYNTRSSSPVA----QF-DH--EGYYNSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~d~~~~~~~~----~~-~~--~~~~~~~~~~~~~~~~~~~~~l~s  186 (224)
                      ..+..|...|.+++|+|+  +++|++++.|+.|++||++++++..    .+ .|  ...     +..++|+| ++++|++
T Consensus       279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~-~~~~l~s  352 (366)
T 3k26_A          279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA-----IRQTSFSR-DSSILIA  352 (366)
T ss_dssp             EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC-----EEEEEECT-TSSEEEE
T ss_pred             ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc-----eEEEEeCC-CCCeEEE
Confidence            556678899999999999  9999999999999999999887654    33 23  344     44477887 7999999


Q ss_pred             cCCCCeEEEEeCCC
Q psy11351        187 GSDDFVLYMWRVPR  200 (224)
Q Consensus       187 ~~~d~~v~iw~~~~  200 (224)
                      ++.||.|++||+.+
T Consensus       353 ~~~dg~i~iwd~~~  366 (366)
T 3k26_A          353 VCDDASIWRWDRLR  366 (366)
T ss_dssp             EETTSEEEEEEC--
T ss_pred             EeCCCEEEEEEecC
Confidence            99999999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=214.17  Aligned_cols=198  Identities=13%  Similarity=0.176  Sum_probs=157.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc-----------eeeEE-ecc------------CCeeEEEEcCCCC-cEEEEec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD-----------PIDFY-LHE------------RPVYGLSVDPSQD-AIFASAC   56 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~-~~~------------~~v~~~~~~~~~~-~~l~s~~   56 (224)
                      +.++.+++|++|+.||.|+|||+.+++           ....+ +|.            ..|++++|+|++. ..|++++
T Consensus        35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s  114 (447)
T 3dw8_B           35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST  114 (447)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence            457788999999999999999999876           34444 787            8899999999863 4899999


Q ss_pred             CCCEEEEEecCCcccc---------------------------------------ee-eccCCcCeEEEEEcCCCCCeEE
Q psy11351         57 DDGRVLLFDTRSREEA---------------------------------------TE-LAVNSGPFHAVMFNPVEARLVA   96 (224)
Q Consensus        57 ~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~i~~~~~~~~~~~~l~   96 (224)
                      .|++|++||+.+++..                                       .. ..+|...|.+++|+| ++++|+
T Consensus       115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  193 (447)
T 3dw8_B          115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYL  193 (447)
T ss_dssp             CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEE
T ss_pred             CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEE
Confidence            9999999999764431                                       12 357899999999999 889999


Q ss_pred             EecCCCcEEEEecCCCceeeE--------eecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCc----ceecc-c
Q psy11351         97 TANSKDGIALYDTRKPKEVLM--------QYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSP----VAQFD-H  162 (224)
Q Consensus        97 ~~~~dg~v~i~d~~~~~~~~~--------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~----~~~~~-~  162 (224)
                      +| .|+.|++||+++......        +..|...|.+++|+|++ ++|++++.|+.|++||+++++.    ...+. +
T Consensus       194 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (447)
T 3dw8_B          194 SA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP  272 (447)
T ss_dssp             EE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC
T ss_pred             Ee-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC
Confidence            98 799999999995443333        34689999999999998 9999999999999999998886    55553 3


Q ss_pred             CCcccc-------eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC-CCe
Q psy11351        163 EGYYNS-------CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR-DDI  203 (224)
Q Consensus       163 ~~~~~~-------~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~-~~~  203 (224)
                      ......       ..+..++|+| ++++|++++. +.|++||+++ ++.
T Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~  319 (447)
T 3dw8_B          273 EDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRP  319 (447)
T ss_dssp             -----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSC
T ss_pred             CCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccc
Confidence            321000       0244578888 7999999998 9999999987 544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-33  Score=213.89  Aligned_cols=188  Identities=9%  Similarity=0.028  Sum_probs=148.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc---eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---ccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD---PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~   74 (224)
                      +..+.+++|++++.|++|++||+.+++   ....+ +|...|++++|+|++ ++|++++.|+.|++||+++++   ....
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeE
Confidence            456678899999999999999999877   33333 899999999999998 899999999999999999887   3667


Q ss_pred             ecc-CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC------------------CceeeEeecCCCceeEEEEcCCCC
Q psy11351         75 LAV-NSGPFHAVMFNPVEARLVATANSKDGIALYDTRK------------------PKEVLMQYGSCESCMSIRFNKAGT  135 (224)
Q Consensus        75 ~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~  135 (224)
                      +.. |...|.+++|+| ++.+|++++.|+.|++||++.                  ++....+ .|...|.+++|+|+++
T Consensus       141 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             ECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             eecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            777 999999999999 889999999999999999853                  2233334 7899999999999999


Q ss_pred             eEeeeecCCCcEEEECCCCCc----ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        136 QLLGLRRRLPPVLYNTRSSSP----VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       136 ~l~~~~~d~~v~v~d~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +|++++.|+.|++||+++++.    +..+ .|...+.+     ++|+| ++.+|++++.++.+ +|+..
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-----~~~s~-~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS-----LLWAN-ESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEE-----EEEEE-TTEEEEEESSSSEE-EECCC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEE-----EEEcC-CCCEEEEEcCCcEE-EEEeC
Confidence            999999999999999999887    5555 56666555     55555 79999999877766 66655

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.9e-32  Score=210.33  Aligned_cols=189  Identities=17%  Similarity=0.255  Sum_probs=159.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCC----------CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc----
Q psy11351          7 IKVLRVIGNDDHVISHDMAS----------GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE----   71 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----   71 (224)
                      +.++++++.||.|++||+.+          .++...+ +|...|++++|+|++..+|++|+.||.|++||++++..    
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  220 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV  220 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence            67999999999999999986          4455555 89999999999999844999999999999999987432    


Q ss_pred             ---ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC---ceeeEeecCCCceeEEEEcCCCC-eEeeeecCC
Q psy11351         72 ---ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP---KEVLMQYGSCESCMSIRFNKAGT-QLLGLRRRL  144 (224)
Q Consensus        72 ---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  144 (224)
                         ...+..|...|.+++|+|.++.+|++++.||.|++||+++.   +....+..|...|++++|+|++. ++++++.|+
T Consensus       221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK  300 (430)
T ss_dssp             EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence               45567899999999999977889999999999999999976   45566668999999999999987 588999999


Q ss_pred             CcEEEECCC-CCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        145 PPVLYNTRS-SSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       145 ~v~v~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      .|++||+++ ..++..+ .|.+.+.     .++|+|.+..+|++++.|+.|++||+..
T Consensus       301 ~v~vwd~~~~~~~~~~~~~h~~~v~-----~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          301 TVALWDLRNLKLKLHSFESHKDEIF-----QVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEEEETTCTTSCSEEEECCSSCEE-----EEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             eEEEEeCCCCCCCeEEeecCCCCEE-----EEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999998 4566666 4666554     4777885446899999999999999987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=218.01  Aligned_cols=193  Identities=8%  Similarity=0.015  Sum_probs=148.3

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCcee----eEE-eccCCeeEEEEcCCC-----CcEEEEecCCCEEEEEecCCccc----
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPI----DFY-LHERPVYGLSVDPSQ-----DAIFASACDDGRVLLFDTRSREE----   71 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~----~~~-~~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~----   71 (224)
                      .++.+++++.|++|+|||+.+++..    ..+ .|.+.|.+++|+|++     ..+|++++.||+|++||+.+++.    
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence            3455677788999999999887643    223 578899999999961     26999999999999999986642    


Q ss_pred             -------ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee-eEeecCCCceeEE--EEcCCC-CeEeee
Q psy11351         72 -------ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV-LMQYGSCESCMSI--RFNKAG-TQLLGL  140 (224)
Q Consensus        72 -------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~v~~~--~~~~~~-~~l~~~  140 (224)
                             ...+.+|...|.+++|++ + ..|++|+.||.|++||++++..+ ..+..|...|.++  .|+|++ .+|+++
T Consensus       252 ~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          252 FKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             ceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                   236678999999999998 5 48999999999999999976443 4567899999999  578888 899999


Q ss_pred             ecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        141 RRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|++|++||+++++....+ .|....   .+..++|+| +++.+++++.|+.|++||++++...
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~---~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~  390 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGS---NLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAV  390 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCC---SCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCC
T ss_pred             ccCCeEEEEECCCCCcccccccccccC---cccceEeCC-CcCeEEEeCCCCcEEEEECcccccc
Confidence            99999999999988776665 332210   123367888 6888999999999999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=232.86  Aligned_cols=198  Identities=10%  Similarity=0.055  Sum_probs=167.4

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +|+++.+++||+|+.||+|+||+..+.+......|...|.+++|+| + ++|++++.|++|++||+++++.+..+. |..
T Consensus        23 lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~   99 (902)
T 2oaj_A           23 AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVF-VPG   99 (902)
T ss_dssp             EEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEE-CSS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEc-CCC
Confidence            3567788999999999999999999887776668889999999999 7 699999999999999999998887775 668


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee-----------eEeecCCCceeEEEEcCC-CCeEeeeecCCCcEE
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV-----------LMQYGSCESCMSIRFNKA-GTQLLGLRRRLPPVL  148 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v  148 (224)
                      .|++++|+| +++++++|+.||.|++||+++++..           ....+|.+.|.+++|+|+ +..+++++.|+.| +
T Consensus       100 ~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-l  177 (902)
T 2oaj_A          100 KITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-T  177 (902)
T ss_dssp             CEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-E
T ss_pred             CEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-E
Confidence            899999999 8999999999999999999987643           122458899999999996 5789999999999 9


Q ss_pred             EECCCCCcceecccC---Cc-----------ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        149 YNTRSSSPVAQFDHE---GY-----------YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       149 ~d~~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ||+++++.+..+...   +.           -..-.+..++|+| ++.+|++|+.|+.|++||+++++..
T Consensus       178 Wd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          178 YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEE
Confidence            999998887776321   00           0012355688888 6999999999999999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=212.51  Aligned_cols=192  Identities=19%  Similarity=0.276  Sum_probs=156.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCcee---------------------------------------eE--EeccCCeeEEEEcC
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPI---------------------------------------DF--YLHERPVYGLSVDP   46 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~--~~~~~~v~~~~~~~   46 (224)
                      .+|++++.|++|++||+.+++..                                       ..  .+|...|++++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            68999999999999998764431                                       12  27999999999999


Q ss_pred             CCCcEEEEecCCCEEEEEecCCc-ccce-------eeccCCcCeEEEEEcCCCC-CeEEEecCCCcEEEEecCCCce---
Q psy11351         47 SQDAIFASACDDGRVLLFDTRSR-EEAT-------ELAVNSGPFHAVMFNPVEA-RLVATANSKDGIALYDTRKPKE---  114 (224)
Q Consensus        47 ~~~~~l~s~~~d~~i~iwd~~~~-~~~~-------~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~i~d~~~~~~---  114 (224)
                      ++ ++|++| .|+.|++||+++. +...       .+..|...|.+++|+| ++ .+|++|+.||.|++||+++++.   
T Consensus       188 ~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          188 DY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             TS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             CC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            98 899998 7999999999843 3333       3668999999999999 65 9999999999999999998875   


Q ss_pred             -eeEeecCCC------------ceeEEEEcCCCCeEeeeecCCCcEEEECCC-CCcceec-ccCCcccce----------
Q psy11351        115 -VLMQYGSCE------------SCMSIRFNKAGTQLLGLRRRLPPVLYNTRS-SSPVAQF-DHEGYYNSC----------  169 (224)
Q Consensus       115 -~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~-~~~~~~~-~~~~~~~~~----------  169 (224)
                       ...+..|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+ .|......+          
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             566666665            8999999999999999998 9999999997 7777777 343222110          


Q ss_pred             eeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        170 TMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ....++|+| ++.+|++|+.||.|++||+.+++..
T Consensus       344 ~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          344 DKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             CCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             cceEEEECC-CCCEEEEeccCCEEEEEEcCCCcce
Confidence            012378888 6999999999999999999998774

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-31  Score=223.24  Aligned_cols=197  Identities=13%  Similarity=0.147  Sum_probs=174.4

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      |+.++.++++++++.||.|+|||+.+++.+..+ +|...|++++|+|++ ++|++++.||.|++||+.+++.+..+..|.
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~   97 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHP   97 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence            356778899999999999999999999888877 799999999999998 899999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC-ceeeEeecCCCceeEEEEcC-CCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKP-KEVLMQYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ..|.+++|+| ++.++++++.||.|++||++++ .....+..|...|.+++|+| +++.+++++.|+.|++||+++++..
T Consensus        98 ~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A           98 DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            9999999999 8899999999999999999987 45566678999999999999 8899999999999999999988877


Q ss_pred             eecc--cCCcccceeeeEEEEeCC-CCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        158 AQFD--HEGYYNSCTMKSCCFAGT-QDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       158 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+.  +...+..     ++|+|. ++.++++++.||.|++||+.+++..
T Consensus       177 ~~~~~~~~~~v~~-----~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  221 (814)
T 3mkq_A          177 FTLTTGQERGVNY-----VDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (814)
T ss_dssp             EEEECCCTTCCCE-----EEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred             eEEecCCCCCEEE-----EEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            7762  2244443     666662 5789999999999999999988764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-31  Score=208.86  Aligned_cols=184  Identities=12%  Similarity=0.173  Sum_probs=162.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcC--CCCcEEEEecCCCEEEEEecCCccc--------------
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDP--SQDAIFASACDDGRVLLFDTRSREE--------------   71 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~--------------   71 (224)
                      ++++|+.||+|++||+++++.+..+ +|...|.+++|++  ++ +++++|+.|++|++||+++++.              
T Consensus       175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  253 (464)
T 3v7d_B          175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  253 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred             EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence            8999999999999999999988887 7999999999984  55 8999999999999999987653              


Q ss_pred             ---------ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec
Q psy11351         72 ---------ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        72 ---------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                               ...+.+|...+.++.  + ++.++++++.||.|++||+++++....+..|...|.+++|+|+++++++++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~  330 (464)
T 3v7d_B          254 HTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM  330 (464)
T ss_dssp             SCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             eccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Confidence                     335667888888874  5 6789999999999999999999888888899999999999999999999999


Q ss_pred             CCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        143 RLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       143 d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      |+.|++||+++++++..+ .|...+..     +.|   ++.+|++++.||.|++||+.+++..
T Consensus       331 dg~i~vwd~~~~~~~~~~~~h~~~v~~-----~~~---~~~~l~s~s~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          331 DTTIRIWDLENGELMYTLQGHTALVGL-----LRL---SDKFLVSAAADGSIRGWDANDYSRK  385 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEE-----EEE---CSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCcEEEEECCCCcEEEEEeCCCCcEEE-----EEE---cCCEEEEEeCCCcEEEEECCCCcee
Confidence            999999999999998888 56666654     444   4689999999999999999988764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-32  Score=212.30  Aligned_cols=199  Identities=12%  Similarity=0.183  Sum_probs=161.5

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCC---CCceeeEE-e------------ccCCeeEEE--EcCCCCcEEEEecCCCEEEE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMA---SGDPIDFY-L------------HERPVYGLS--VDPSQDAIFASACDDGRVLL   63 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~-~------------~~~~v~~~~--~~~~~~~~l~s~~~d~~i~i   63 (224)
                      +..+.+++|++|+.||+|++||+.   +++..... .            +...+.++.  +++++ ++|++++.|+.|++
T Consensus       118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i  196 (437)
T 3gre_A          118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVII  196 (437)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEE
T ss_pred             EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEE
Confidence            455678899999999999999994   55544433 1            455666666  55777 89999999999999


Q ss_pred             EecCCcccceeecc--CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEc----CCCCe
Q psy11351         64 FDTRSREEATELAV--NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFN----KAGTQ  136 (224)
Q Consensus        64 wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~----~~~~~  136 (224)
                      ||+++++.+..+..  |...|.+++|+| ++.+|++|+.||.|++||+++++....+. .|...|.+++|+    |++.+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          197 FDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             EETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             EeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence            99999999988887  889999999999 89999999999999999999987777665 678899999655    56789


Q ss_pred             EeeeecCCCcEEEECCCCCcceec-ccCCcccce---------------------eeeEEEEeCCCCeEEEEcCCCCeEE
Q psy11351        137 LLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSC---------------------TMKSCCFAGTQDEYVVSGSDDFVLY  194 (224)
Q Consensus       137 l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~~~~~~~~~l~s~~~d~~v~  194 (224)
                      |++++.|+.|++||+++++.+..+ .+...+..+                     .+..++|+  ++++|++|+.|+.|+
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~  353 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIV  353 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEE
Confidence            999999999999999988877666 333222211                     13346777  468999999999999


Q ss_pred             EEeCCCCCeE
Q psy11351        195 MWRVPRDDIY  204 (224)
Q Consensus       195 iw~~~~~~~~  204 (224)
                      +||+.+++..
T Consensus       354 ~wd~~~~~~~  363 (437)
T 3gre_A          354 MFSLNELSSS  363 (437)
T ss_dssp             EEETTCGGGC
T ss_pred             EEECCCcccc
Confidence            9999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-31  Score=231.64  Aligned_cols=201  Identities=15%  Similarity=0.211  Sum_probs=173.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.+++++++++|+.||+|++||+.+++.+..+ +|...|.+++|+|++ +++++++.|++|++||+.+++.+..+.+|..
T Consensus       622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  700 (1249)
T 3sfz_A          622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSE  700 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence            56778899999999999999999999988877 899999999999998 8999999999999999999999999999999


Q ss_pred             CeEEEEEcCC-CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         81 PFHAVMFNPV-EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        81 ~i~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .|.+++|+|. +..++++|+.|+.|++||+++++....+.+|...|.+++|+|+++++++++.|+.|++||+++++....
T Consensus       701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~  780 (1249)
T 3sfz_A          701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS  780 (1249)
T ss_dssp             CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred             cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence            9999999984 345889999999999999999988888889999999999999999999999999999999987654333


Q ss_pred             cccCC--------------cc-------------------------------------cceeeeEEEEeCCCCeEEEEcC
Q psy11351        160 FDHEG--------------YY-------------------------------------NSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       160 ~~~~~--------------~~-------------------------------------~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      +....              .+                                     ..-.+..++|+| ++.++++++
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~  859 (1249)
T 3sfz_A          781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIAL  859 (1249)
T ss_dssp             EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEEC
T ss_pred             ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEe
Confidence            21000              00                                     011234577888 689999999


Q ss_pred             CCCeEEEEeCCCCCeE
Q psy11351        189 DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       189 ~d~~v~iw~~~~~~~~  204 (224)
                      .|+.|++||+.+++..
T Consensus       860 ~dg~v~vwd~~~~~~~  875 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLKV  875 (1249)
T ss_dssp             SSSCEEEEETTTTEEE
T ss_pred             CCCeEEEEEcCCCcee
Confidence            9999999999988664

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-31  Score=208.64  Aligned_cols=194  Identities=14%  Similarity=0.263  Sum_probs=158.4

Q ss_pred             CCCcce-EEEEEeCCCcEEEEeCCCCce-------eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc---c
Q psy11351          3 SGDPIK-VLRVIGNDDHVISHDMASGDP-------IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR---E   70 (224)
Q Consensus         3 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~   70 (224)
                      .+..+. +|++|+.||+|++||+.++..       ...+ +|...|.+++|+|++..+|++++.|+.|++||++++   +
T Consensus       189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred             eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence            344555 999999999999999987432       2333 799999999999965589999999999999999987   4


Q ss_pred             cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC-ceeeEeecCCCceeEEEEcCCCC-eEeeeecCCCcEE
Q psy11351         71 EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP-KEVLMQYGSCESCMSIRFNKAGT-QLLGLRRRLPPVL  148 (224)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~v  148 (224)
                      .+..+..|...|++++|+|++..++++|+.||.|++||+++. ..+..+..|...|.+++|+|+++ +|++++.|+.|++
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            677778999999999999954458999999999999999984 45667778999999999999986 6889999999999


Q ss_pred             EECCCC--------------Ccceec-ccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCCCC
Q psy11351        149 YNTRSS--------------SPVAQF-DHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       149 ~d~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ||++..              +.+..+ .|...+.     .++|+| ++. +|++++.|+.|++|++....
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-----DFSWNP-NEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE-----EEEECS-SSTTEEEEEETTSEEEEEEECHHH
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCce-----EEEECC-CCCCEEEEEECCCCEEEeEccccc
Confidence            999862              223333 3444444     477777 566 89999999999999997653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.4e-31  Score=198.89  Aligned_cols=195  Identities=14%  Similarity=0.213  Sum_probs=166.1

Q ss_pred             CCCCc-ceEEEEEeCCCcEEEEeCCCCce-----eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          2 ASGDP-IKVLRVIGNDDHVISHDMASGDP-----IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~-~~~l~~~~~dg~i~iwd~~~~~~-----~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      ++++. +++|+||+.|++|+|||+.+.+.     ...+ +|...|.+++|+|++ ++|++++.|+.|++|+.........
T Consensus        45 ~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~~~~~  123 (340)
T 4aow_A           45 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGTTTRR  123 (340)
T ss_dssp             EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccceeee
Confidence            34433 67999999999999999987542     3334 799999999999998 8999999999999999999888888


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCC--CeEeeeecCCCcEEEEC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAG--TQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~v~d~  151 (224)
                      ...+...+..+.+++ .+.++++++.|+.+++||+........ ...|...+..++|++++  .++++++.|+.|++||+
T Consensus       124 ~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~  202 (340)
T 4aow_A          124 FVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL  202 (340)
T ss_dssp             EECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             ecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence            888888999999999 889999999999999999987654333 34688999999999875  46788999999999999


Q ss_pred             CCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++++.+..+ .|.+.+.+     ++|+| ++++|++|+.|+.|++||+++.+..
T Consensus       203 ~~~~~~~~~~~h~~~v~~-----~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          203 ANCKLKTNHIGHTGYLNT-----VTVSP-DGSLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             TTTEEEEEECCCSSCEEE-----EEECT-TSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             CCCceeeEecCCCCcEEE-----EEECC-CCCEEEEEeCCCeEEEEEeccCcee
Confidence            999888887 57776655     66677 7999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6e-32  Score=206.50  Aligned_cols=190  Identities=11%  Similarity=0.107  Sum_probs=163.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc----cee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE----ATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~   74 (224)
                      +..+.+++|++++.||.|++||+++++.....   .|...|.+++|+|++ ++|++++.|+.|++||++.++.    ...
T Consensus        59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence            34567889999999999999999988754433   789999999999998 8999999999999999988763    223


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC------------------CCceeeEeecCCCceeEEEEcCCCCe
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR------------------KPKEVLMQYGSCESCMSIRFNKAGTQ  136 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~  136 (224)
                      ...|...|.+++|+| ++.++++++.||.|++||++                  .++....+..|...+.+++|+|++++
T Consensus       138 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  216 (372)
T ss_dssp             CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             ecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE
Confidence            367889999999999 88999999999999999964                  55666667789999999999999999


Q ss_pred             EeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        137 LLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       137 l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      |++++.|+.|++||+++++++..+ .|...+.+     ++|+| ++.++++| .|+.|++|++.+
T Consensus       217 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~-----~~~~~-~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          217 VAWVSHDSTVCLADADKKMAVATLASETLPLLA-----VTFIT-ESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEE-----EEEEE-TTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEeCCCEEEEEECCCCceeEEEccCCCCeEE-----EEEec-CCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999999988888 45555555     55565 78888888 899999999988

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-31  Score=204.72  Aligned_cols=192  Identities=17%  Similarity=0.163  Sum_probs=155.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .+++|++++.|++|++||+.+.......   +|...|.+++|+|++ ++|++++.|+.|++||+ +++.+..+..|...|
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v  207 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV  207 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence            5689999999999999999974444333   345889999999998 89999999999999999 467788889999999


Q ss_pred             EEEEEcCCCCC-eEEEecCCCcEEEEecCC----CceeeEeecCCCceeEEEEcC-CCCeEeeeecCCCcEEEECCCCCc
Q psy11351         83 HAVMFNPVEAR-LVATANSKDGIALYDTRK----PKEVLMQYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        83 ~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      .+++|+| ++. ++++++.|+.|++||+++    .... ....|...|.+++|+| ++++|++++.|+.|++||+++++.
T Consensus       208 ~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          208 THAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYI-AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEE-EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceE-EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            9999999 666 999999999999999997    3333 3347999999999999 999999999999999999998877


Q ss_pred             ceec-ccC-------Ccccc-----eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQF-DHE-------GYYNS-----CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~-~~~-------~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...+ .|.       ..+..     -....++|+| ++.+  +++.|+.|++||+.+++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             ccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCcee
Confidence            6665 232       11110     0112255555 4555  7889999999999998875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=207.70  Aligned_cols=191  Identities=11%  Similarity=0.124  Sum_probs=165.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-------   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------   73 (224)
                      +.++++++|++++.||.|++|| .+++.+..+ .|...|.+++|+|++ ++|++++.|+.|++||+++++.+.       
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            4566789999999999999999 556666666 799999999999998 899999999999999997654322       


Q ss_pred             -------------------------------------------------eeccCCcCeEEEEEcCCCCCeEEEecCCCcE
Q psy11351         74 -------------------------------------------------ELAVNSGPFHAVMFNPVEARLVATANSKDGI  104 (224)
Q Consensus        74 -------------------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  104 (224)
                                                                       .+..|...|.+++|+| ++.++++++.|+.|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTL  271 (425)
T ss_dssp             -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCE
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence                                                             3346778899999999 88999999999999


Q ss_pred             EEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeE
Q psy11351        105 ALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEY  183 (224)
Q Consensus       105 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
                      ++||+++++....+..|...+.+++|+|++ ++++++.|+.|++||+++++.+..+ .|...+.     .++|+| ++++
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~s~-~~~~  344 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF-----AGRISQ-DGQK  344 (425)
T ss_dssp             EEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE-----EEEECT-TSSE
T ss_pred             EEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE-----EEEEcC-CCCE
Confidence            999999988888888899999999999999 9999999999999999999888777 4555544     467777 7999


Q ss_pred             EEEcCCCCeEEEEeCCCCC
Q psy11351        184 VVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       184 l~s~~~d~~v~iw~~~~~~  202 (224)
                      |++++.||.|++||+.+++
T Consensus       345 l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEETTSCEEEEECHHHH
T ss_pred             EEEEECCCeEEEEECCCCc
Confidence            9999999999999998876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.6e-31  Score=205.35  Aligned_cols=183  Identities=17%  Similarity=0.240  Sum_probs=162.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +++++++|+.||+|++||+.+++....+ +|...|.+++|  ++ ++|++|+.||+|++||+++++.+..+..|...|.+
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  218 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH  218 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE
Confidence            5679999999999999999999988888 89999999999  45 79999999999999999999999999999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCcee---eEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEV---LMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      ++|++   .++++|+.||.|++||+++++..   ..+.+|...|.+++|  +++++++++.|+.|++||+++++.+..+ 
T Consensus       219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  293 (435)
T 1p22_A          219 LRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN  293 (435)
T ss_dssp             EECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence            99975   49999999999999999987654   455679999999999  7799999999999999999999988888 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|...+.+     +.+   ++.++++|+.||.|++||+++++..
T Consensus       294 ~~~~~v~~-----~~~---~~~~l~~g~~dg~i~iwd~~~~~~~  329 (435)
T 1p22_A          294 GHKRGIAC-----LQY---RDRLVVSGSSDNTIRLWDIECGACL  329 (435)
T ss_dssp             CCSSCEEE-----EEE---ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCcEEE-----EEe---CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            46666554     333   4679999999999999999998775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-31  Score=201.83  Aligned_cols=196  Identities=13%  Similarity=0.142  Sum_probs=158.7

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCC-cEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ...++++++++.|+.+++||..........  +|...+..++|++++. .++++++.|+.|++||+++++.+..+.+|..
T Consensus       137 ~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~  216 (340)
T 4aow_A          137 SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG  216 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence            455678999999999999999876554443  7899999999998753 4788999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .|.+++|+| ++++|++|+.||.|++||+++.+.+..+. +...+.++.|+|++.+ ++++.|+.|++||++++..+..+
T Consensus       217 ~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          217 YLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             CEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEE
T ss_pred             cEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEec
Confidence            999999999 89999999999999999999987666555 4578999999998755 55667999999999987666554


Q ss_pred             ccC-----CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHE-----GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ...     .......+..++|+| ++++|++|+.||.|++||+.+|.+
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             CCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC---
T ss_pred             cccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcCC
Confidence            210     001112244578888 799999999999999999998853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=203.58  Aligned_cols=196  Identities=11%  Similarity=0.057  Sum_probs=160.5

Q ss_pred             CCCCcc-eEEEEEeC---CCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCC--CcEEEEecCCCEEEEEecCCcc-cc
Q psy11351          2 ASGDPI-KVLRVIGN---DDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQ--DAIFASACDDGRVLLFDTRSRE-EA   72 (224)
Q Consensus         2 a~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~-~~   72 (224)
                      +..+.+ .++++|+.   ||+|++||+.+++.....  +|...|++++|+|++  +++|++|+.|+.|++||+++++ .+
T Consensus        25 ~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  104 (357)
T 3i2n_A           25 KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV  104 (357)
T ss_dssp             EECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS
T ss_pred             EEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE
Confidence            345555 45667766   999999999998875443  899999999999983  2799999999999999999988 88


Q ss_pred             eeeccCCcCeEEEEE------cCCCCCeEEEecCCCcEEEEecCCCc-eeeEeecCCC----ceeEEE----EcCCCCeE
Q psy11351         73 TELAVNSGPFHAVMF------NPVEARLVATANSKDGIALYDTRKPK-EVLMQYGSCE----SCMSIR----FNKAGTQL  137 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~------~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l  137 (224)
                      ..+.+|...|.+++|      +| ++++|++++.||.|++||+++++ ....+..+.+    .+.+++    |+|+++++
T Consensus       105 ~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l  183 (357)
T 3i2n_A          105 YSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV  183 (357)
T ss_dssp             EEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE
T ss_pred             EEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE
Confidence            889999999999954      67 78899999999999999999876 4555544433    788888    78899999


Q ss_pred             eeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCC--CCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        138 LGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGT--QDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++++.|+.|++||+++++......+...+.     .++|+|.  ++.+|++++.||.|++||+++++.
T Consensus       184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          184 CAGYDNGDIKLFDLRNMALRWETNIKNGVC-----SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEE-----EEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred             EEEccCCeEEEEECccCceeeecCCCCceE-----EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence            999999999999999988766656666544     4778873  478999999999999999987654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=198.37  Aligned_cols=195  Identities=12%  Similarity=0.170  Sum_probs=170.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCccc-----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSREE-----   71 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~-----   71 (224)
                      +....+++|++++.||+|++||+.+++.+..+.+...+.+++|+|++ +++++++.+     +.|++||++.+..     
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           81 DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence            44567889999999999999999999999888899999999999998 799999988     9999999987643     


Q ss_pred             ------ceeeccCCc--CeEEEEEcCCCCCeEEEecCCCcEEEEecCC-CceeeEeecCCCceeEEEEcCCCCeEeeeec
Q psy11351         72 ------ATELAVNSG--PFHAVMFNPVEARLVATANSKDGIALYDTRK-PKEVLMQYGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        72 ------~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                            ...+..|..  .+.+++|+| +++++++++.||.|++||+++ .+....+..|...|.+++|+|++++|++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  238 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR  238 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence                  334445555  899999999 889999999999999999998 6667777789999999999999999999999


Q ss_pred             CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC--------------eEEEEeCCCCCeE
Q psy11351        143 RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF--------------VLYMWRVPRDDIY  204 (224)
Q Consensus       143 d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--------------~v~iw~~~~~~~~  204 (224)
                      |+.|++||+++++.+..+.+...+.     .++|+| ++.++++++.++              .+++||+.+++..
T Consensus       239 d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVLKKYETDCPLN-----TAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEE-----EEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CceEEEEECCCCceeeeecCCCCce-----eEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            9999999999999888886555544     466777 789999998888              8999999998775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.2e-31  Score=203.40  Aligned_cols=200  Identities=16%  Similarity=0.245  Sum_probs=164.3

Q ss_pred             CCCC-cceEEEEEeCCCcEEEEeCCCCceeeEE--------------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec
Q psy11351          2 ASGD-PIKVLRVIGNDDHVISHDMASGDPIDFY--------------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT   66 (224)
Q Consensus         2 a~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~   66 (224)
                      +.++ .+++|++|+.||.|++||+.+++....+              +|...|.+++|+|++.++|++++.|+.|++||+
T Consensus        50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  129 (408)
T 4a11_B           50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT  129 (408)
T ss_dssp             EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence            4456 7899999999999999999988765544              299999999999955489999999999999999


Q ss_pred             CCcccceeeccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCe-EeeeecC
Q psy11351         67 RSREEATELAVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQ-LLGLRRR  143 (224)
Q Consensus        67 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d  143 (224)
                      ++++....+. +...+.++.++|..  +.++++++.++.|++||+++++....+..|...|.+++|+|++++ +++++.|
T Consensus       130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d  208 (408)
T 4a11_B          130 NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASAD  208 (408)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence            9988777765 67789999999842  339999999999999999999888888889999999999999985 8899999


Q ss_pred             CCcEEEECCCCC-cceecc-cCC----------cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        144 LPPVLYNTRSSS-PVAQFD-HEG----------YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       144 ~~v~v~d~~~~~-~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.|++||++++. .+..+. +.+          ......+..++|+| ++++|++++.|+.|++||+.+++.
T Consensus       209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCB
T ss_pred             CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcc
Confidence            999999998765 222221 000          01112244578888 799999999999999999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-32  Score=224.27  Aligned_cols=195  Identities=17%  Similarity=0.247  Sum_probs=165.3

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCC--CceeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCcc--cce
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMAS--GDPIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSRE--EAT   73 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~--~~~   73 (224)
                      |+.+.+++++++|+.||+|++||+.+  ++....+ +|.+.|++++|+|+  + ++|++|+.||.|++||+++++  ...
T Consensus        15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~   93 (753)
T 3jro_A           15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIA   93 (753)
T ss_dssp             ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccc
Confidence            35677889999999999999999984  4455555 89999999999987  6 899999999999999999886  667


Q ss_pred             eeccCCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCc--eeeEeecCCCceeEEEEcC-------------CCCe
Q psy11351         74 ELAVNSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPK--EVLMQYGSCESCMSIRFNK-------------AGTQ  136 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~  136 (224)
                      .+..|...|.+++|+| +  +.++++|+.||.|++||+++..  ....+..|...|.+++|+|             ++.+
T Consensus        94 ~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~  172 (753)
T 3jro_A           94 VHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (753)
T ss_dssp             EECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred             cccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence            7788999999999999 7  8999999999999999998763  3445567999999999999             5899


Q ss_pred             EeeeecCCCcEEEECCCCCcc----eec-ccCCcccceeeeEEEEeCCC--CeEEEEcCCCCeEEEEeCCCCC
Q psy11351        137 LLGLRRRLPPVLYNTRSSSPV----AQF-DHEGYYNSCTMKSCCFAGTQ--DEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       137 l~~~~~d~~v~v~d~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +++++.|+.|++||++++...    ..+ .|.+.+.+     ++|+|.+  +.+|++++.||.|++||+.+++
T Consensus       173 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~-----l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD-----VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE-----EEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE-----EEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence            999999999999999887433    333 35555544     6777732  8999999999999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-31  Score=209.09  Aligned_cols=196  Identities=14%  Similarity=0.150  Sum_probs=154.2

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      ++++|++|+.||+|++||++++......   .+...+.+++|+|++ ++|++|+.||.|++||++. +.+..+.+|...|
T Consensus       176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v  253 (435)
T 4e54_B          176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDG-KELWNLRMHKKKV  253 (435)
T ss_dssp             CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSS-CBCCCSBCCSSCE
T ss_pred             CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCc-ceeEEEecccceE
Confidence            5779999999999999999876655444   234568899999998 8999999999999999864 5677889999999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE---eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM---QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .+++|+|.+..++++++.|+.|++||+++.+....   ..+|...|++++|+|+|++|++++.|+.|++||+++++....
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            99999995567899999999999999987654333   346899999999999999999999999999999999877666


Q ss_pred             c-ccCCc-ccceeeeEEEEeCCCCeEEEEc------------CCCCeEEEEeCCCCCeE
Q psy11351        160 F-DHEGY-YNSCTMKSCCFAGTQDEYVVSG------------SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~-~~~~~-~~~~~~~~~~~~~~~~~~l~s~------------~~d~~v~iw~~~~~~~~  204 (224)
                      + .|... ........+.|+| ++.+++++            ..++.|++||..+++..
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~  391 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM  391 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred             EecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence            5 33221 1111222345555 34444433            34568999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.2e-31  Score=203.40  Aligned_cols=192  Identities=19%  Similarity=0.254  Sum_probs=161.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCC--cEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQD--AIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      .++++++++.||.|++||+.+++....+.+...+.++.|+|.+.  .++++++.|+.|++||+++++.+..+..|...|.
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            56789999999999999999999998888999999999998642  4999999999999999999999999999999999


Q ss_pred             EEEEcCCCCC-eEEEecCCCcEEEEecCCCceee-Ee---------------ecCCCceeEEEEcCCCCeEeeeecCCCc
Q psy11351         84 AVMFNPVEAR-LVATANSKDGIALYDTRKPKEVL-MQ---------------YGSCESCMSIRFNKAGTQLLGLRRRLPP  146 (224)
Q Consensus        84 ~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~-~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v  146 (224)
                      +++|+| ++. ++++++.||.|++||+++..... .+               ..|...|.+++|+|++++|++++.|+.|
T Consensus       191 ~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          191 AVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            999999 555 69999999999999998765322 22               3588899999999999999999999999


Q ss_pred             EEEECCCCCcceec------------------------------------------------ccCCcccceeeeEEEEeC
Q psy11351        147 VLYNTRSSSPVAQF------------------------------------------------DHEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       147 ~v~d~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~  178 (224)
                      ++||+++++....+                                                .|.+.     +..++|+|
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----v~~~~~s~  344 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT-----VDCCVFQS  344 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC-----EEEEEEET
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe-----EEEEEEcC
Confidence            99999876543221                                                12222     44578888


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       ++++|++++.||.|++||+.+++..
T Consensus       345 -~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          345 -NFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             -TTTEEEEEETTSCEEEEEECC----
T ss_pred             -CCCEEEEECCCCeEEEEeCCCCCcc
Confidence             7899999999999999999998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.2e-31  Score=196.74  Aligned_cols=175  Identities=9%  Similarity=0.085  Sum_probs=138.2

Q ss_pred             CCCcEEEEeC-CCCceeeEE-eccCCeeEEEEcC---CCCcEEEEecCCCEEEEEecCCcccceeeccCC---cCeEEEE
Q psy11351         15 NDDHVISHDM-ASGDPIDFY-LHERPVYGLSVDP---SQDAIFASACDDGRVLLFDTRSREEATELAVNS---GPFHAVM   86 (224)
Q Consensus        15 ~dg~i~iwd~-~~~~~~~~~-~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~i~~~~   86 (224)
                      .|++|++|++ ++++.+... +|...++.++|+|   ++ .+|++++.|++|+|||+++++.++++.+|.   ..+.+++
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va  233 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA  233 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence            4999999999 447766654 8999999999998   55 799999999999999999999999997654   3677889


Q ss_pred             EcCCCCCeE------------EEecCCCcEEEEecCCCceeeEe-----ecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         87 FNPVEARLV------------ATANSKDGIALYDTRKPKEVLMQ-----YGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        87 ~~~~~~~~l------------~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      |+| ++.++            ++|+.|+++++||..+++.+..+     .+|...+.+..++  +..+++++.|++|++|
T Consensus       234 fSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIW  310 (356)
T 2w18_A          234 YSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             ECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEE
Confidence            999 77765            66889999999999998765544     2455554444443  7889999999999999


Q ss_pred             ECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        150 NTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       150 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      |+.+++.+.++ .|...+..    .++|+| ++++|++|+.|++|+|||+
T Consensus       311 Dl~tGk~l~tL~gH~~~vvs----~vafSP-DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          311 DLLLGQCTALLPPVSDQHWS----FVKWSG-TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTTCSEEEEECCC--CCCC----EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred             ECCCCcEEEEecCCCCCeEE----EEEECC-CCCEEEEEECCCcEEEecC
Confidence            99999999998 45554432    367888 7999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-31  Score=201.89  Aligned_cols=188  Identities=15%  Similarity=0.227  Sum_probs=158.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc-eeeEE-eccCCeeEEEE------cCCCCcEEEEecCCCEEEEEecCCcc-cceeecc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD-PIDFY-LHERPVYGLSV------DPSQDAIFASACDDGRVLLFDTRSRE-EATELAV   77 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~v~~~~~------~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~   77 (224)
                      +++|++|+.||.|++||+.+++ .+..+ +|...|.+++|      +|++ ++|++++.|+.|++||+++++ ++..+..
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence            6899999999999999999887 66666 89999999965      6777 799999999999999999887 6777765


Q ss_pred             CCc----CeEEEE----EcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcC---CCCeEeeeecCCCc
Q psy11351         78 NSG----PFHAVM----FNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK---AGTQLLGLRRRLPP  146 (224)
Q Consensus        78 ~~~----~i~~~~----~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v  146 (224)
                      |.+    .+.+++    |+| ++.++++++.||.|++||+++++. .....|...+.+++|+|   +++++++++.|+.|
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            554    789998    778 889999999999999999998865 44566889999999999   99999999999999


Q ss_pred             EEEECCCCCcceec------ccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCCCCe
Q psy11351        147 VLYNTRSSSPVAQF------DHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       147 ~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++||+++++....+      .|...+.     .++|+| ++. +|++++.||.|++||++.+..
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEKAHKSTVW-----QVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCSSCEE-----EEEEET-TEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             EEEeCcCCCcccceeeeccCCCcCCEE-----EEEECC-CCCcEEEEEeCCCcEEEeecCCCcc
Confidence            99999887766554      3444444     477777 566 899999999999999987643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-30  Score=203.50  Aligned_cols=183  Identities=13%  Similarity=0.206  Sum_probs=165.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      .++++++|+.||+|++||+.+++.+..+ +|...|.+++|+  + +++++|+.||+|++||+++++.+..+.+|...|.+
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  204 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D-NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC  204 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--C-CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEE
Confidence            4678999999999999999999988877 899999999998  3 69999999999999999999999999999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccC
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHE  163 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~  163 (224)
                      +.|++   ..+++++.||.|++||+++++....+..|...+.+++|  +++++++++.|+.|++||+++++.+..+ .|.
T Consensus       205 ~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  279 (445)
T 2ovr_B          205 MHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT  279 (445)
T ss_dssp             EEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred             EEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence            99965   67999999999999999999888888899999999999  7899999999999999999999888887 466


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+.+     +.|   ++.++++++.|+.|++||+++++..
T Consensus       280 ~~v~~-----~~~---~~~~l~~~~~d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          280 NRVYS-----LQF---DGIHVVSGSLDTSIRVWDVETGNCI  312 (445)
T ss_dssp             SCEEE-----EEE---CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CceEE-----EEE---CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            66554     344   6789999999999999999998775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.2e-31  Score=221.20  Aligned_cols=196  Identities=14%  Similarity=0.181  Sum_probs=173.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-ccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-EEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~   79 (224)
                      +.++++++|++++.||.|++||+.+++.+..+ +|...|++++|+|++ ++|++++.||.|++||++++ .....+..|.
T Consensus        62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  140 (814)
T 3mkq_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (814)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence            44567889999999999999999999988877 799999999999998 79999999999999999887 5667788999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-CCceeEEEEcC--CCCeEeeeecCCCcEEEECCCCCc
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-CESCMSIRFNK--AGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      ..|.+++|+|.++..+++++.||.|++||++++.....+..+ ...+.+++|+|  ++.++++++.|+.|++||+++++.
T Consensus       141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (814)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred             CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            999999999966789999999999999999988776666654 48899999999  899999999999999999999988


Q ss_pred             ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +..+ .|.+.+.+     ++|+| +++++++++.||.|++||+.+++..
T Consensus       221 ~~~~~~~~~~v~~-----~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          221 VATLEGHMSNVSF-----AVFHP-TLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             EEEEECCSSCEEE-----EEECS-SSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             EEEEcCCCCCEEE-----EEEcC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            8877 46555544     66777 7899999999999999999988764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.2e-31  Score=199.89  Aligned_cols=194  Identities=13%  Similarity=0.133  Sum_probs=153.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCC-Ccee-eEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          7 IKVLRVIGNDDHVISHDMAS-GDPI-DFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~-~~~~-~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      +++|++|+.||.|++||+.+ ++.+ ..+ +|...|++++|+|++ ++|++++.||.|++||+++++.+. +..|...|.
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~  131 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVK  131 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCcee-eccccCceE
Confidence            69999999999999999997 5554 334 899999999999998 899999999999999999888655 567899999


Q ss_pred             EEEE--cCCCCCeEEEecCCCcEEEEecCCCceeeEeecC----------------------------------------
Q psy11351         84 AVMF--NPVEARLVATANSKDGIALYDTRKPKEVLMQYGS----------------------------------------  121 (224)
Q Consensus        84 ~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----------------------------------------  121 (224)
                      +++|  +| ++.++++++.||.|++||+++++....+..+                                        
T Consensus       132 ~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  210 (368)
T 3mmy_A          132 TIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP  210 (368)
T ss_dssp             EEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCS
T ss_pred             EEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccc
Confidence            9999  88 8889999999999999999987655444322                                        


Q ss_pred             -CCceeEEEEcCCCCe----EeeeecCCCcEEEECCCCC---cceec-ccCCcc-------cceeeeEEEEeCCCCeEEE
Q psy11351        122 -CESCMSIRFNKAGTQ----LLGLRRRLPPVLYNTRSSS---PVAQF-DHEGYY-------NSCTMKSCCFAGTQDEYVV  185 (224)
Q Consensus       122 -~~~v~~~~~~~~~~~----l~~~~~d~~v~v~d~~~~~---~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~l~  185 (224)
                       ...+.++.+.++...    +++++.|+.|++||++...   .+..+ .|....       ....+..++|+| ++++|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~  289 (368)
T 3mmy_A          211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLA  289 (368)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEE
T ss_pred             ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEE
Confidence             233455555555444    8999999999999998773   34444 232210       000255678888 789999


Q ss_pred             EcCCCCeEEEEeCCCCCeE
Q psy11351        186 SGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       186 s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++.||.|++||+.+++..
T Consensus       290 s~~~dg~i~iwd~~~~~~~  308 (368)
T 3mmy_A          290 TVGSDGRFSFWDKDARTKL  308 (368)
T ss_dssp             EEETTSCEEEEETTTTEEE
T ss_pred             EEccCCeEEEEECCCCcEE
Confidence            9999999999999998775

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=206.79  Aligned_cols=184  Identities=10%  Similarity=0.128  Sum_probs=165.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ...+++++.||.|++||+.+++.+..+ .|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+..|...|.++
T Consensus       217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  295 (425)
T 1r5m_A          217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA  295 (425)
T ss_dssp             TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEE
Confidence            356899999999999999999888777 899999999999998 799999999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCC----------
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSS----------  155 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~----------  155 (224)
                      +|+| ++ ++++++.|+.|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||+++++          
T Consensus       296 ~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  373 (425)
T 1r5m_A          296 SWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR  373 (425)
T ss_dssp             EEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred             EECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence            9999 66 99999999999999999998888888899999999999999999999999999999998776          


Q ss_pred             ----------cceec-ccCC--cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        156 ----------PVAQF-DHEG--YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       156 ----------~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                                .+..+ .|..  .+     ..++|+| ++++|++++.||.|++|+++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~-~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          374 DGILNPLPIPLYASYQSSQDNDYI-----FDLSWNC-AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -----CEECCEEEEECCTTCCCCE-----EEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred             ccccCcccchhhhhhcCcccCCce-----EEEEccC-CCceEEEEecCceEEEEeec
Confidence                      55555 3332  44     4477777 78999999999999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.9e-31  Score=199.91  Aligned_cols=195  Identities=9%  Similarity=0.047  Sum_probs=162.1

Q ss_pred             CCCcce-EEEEEeCCCcEEEEeC-CCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC---------c
Q psy11351          3 SGDPIK-VLRVIGNDDHVISHDM-ASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS---------R   69 (224)
Q Consensus         3 ~~~~~~-~l~~~~~dg~i~iwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~   69 (224)
                      ..+.++ +|++|+.||.|++||+ .+++.....+  |...|.+++|+| + ++|++++.|+.|++||+++         +
T Consensus        64 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  141 (342)
T 1yfq_A           64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccC
Confidence            345678 9999999999999999 8887755557  999999999999 6 8999999999999999998         7


Q ss_pred             ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC-Cce--eeEeecCCCceeEEEEcC-CCCeEeeeecCCC
Q psy11351         70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK-PKE--VLMQYGSCESCMSIRFNK-AGTQLLGLRRRLP  145 (224)
Q Consensus        70 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  145 (224)
                      +++..+. |...+.+++|+| +.  +++++.++.|++||+++ ...  ......+...+.+++|+| +++++++++.|+.
T Consensus       142 ~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          142 LNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             SCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             CeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            7777776 888999999998 54  88999999999999998 543  223446888999999999 9999999999999


Q ss_pred             cEEEECCCC------Ccceec-ccCCcc----cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        146 PVLYNTRSS------SPVAQF-DHEGYY----NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       146 v~v~d~~~~------~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++|+++..      +....+ .|....    ....+..++|+| ++++|++++.||.|++||+.+++..
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHh
Confidence            999999876      666666 343200    011344578888 6899999999999999999998765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-31  Score=200.73  Aligned_cols=188  Identities=13%  Similarity=0.050  Sum_probs=154.0

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC---------Ccccceee
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR---------SREEATEL   75 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~   75 (224)
                      .++.++++|+.||+|++||+++++.+..+. ...|.++.|+|.    +++++.|++|++|+..         +++.+..+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            457899999999999999999998877765 567888889885    9999999999999766         33333333


Q ss_pred             c-cCCcCeEEEEEcCC-CCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         76 A-VNSGPFHAVMFNPV-EARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        76 ~-~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      . .|...|.+++|+|. ++.++++++.||.|++||+++++...... .+...+.+++|+|++.+|++|+.|+.|++||++
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            3 56688999999982 46899999999999999999887755443 456689999999999999999999999999999


Q ss_pred             CCCcc-eec-c-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        153 SSSPV-AQF-D-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++.+ ..+ . |.+.+.+     ++|+| ++.+|++++ |+.|++||+++++..
T Consensus       201 ~~~~~~~~~~~~h~~~v~~-----l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          201 SPDQASSRFPVDEEAKIKE-----VKFAD-NGYWMVVEC-DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             CTTSCCEECCCCTTSCEEE-----EEECT-TSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred             CCCCCccEEeccCCCCEEE-----EEEeC-CCCEEEEEe-CCeEEEEEcCCCCcc
Confidence            99887 566 3 6666554     66777 799999999 559999999988653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-29  Score=197.45  Aligned_cols=188  Identities=16%  Similarity=0.230  Sum_probs=159.3

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      +++||+|. |++|+|||..+++....+   +|...|++++|+|++ ++|++|+.||+|++||+++++.+..+.+|...+.
T Consensus       116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE
Confidence            45777775 999999999999988766   578889999999999 8999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee---
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ---  159 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~---  159 (224)
                      ++.+++   .++++|+.|+.+++||.+.... ...+..|...+..+.|+|+++++++++.|+.+++|+..+++....   
T Consensus       194 ~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~  270 (420)
T 4gga_A          194 SLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ  270 (420)
T ss_dssp             EEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred             EEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence            998854   7999999999999999986543 455668999999999999999999999999999999987754322   


Q ss_pred             -c-ccCCcccceeeeEEEEeCCCCeEEEE--cCCCCeEEEEeCCCCCeE
Q psy11351        160 -F-DHEGYYNSCTMKSCCFAGTQDEYVVS--GSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 -~-~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~v~iw~~~~~~~~  204 (224)
                       . .|.+.+     ..++|+|.+..++++  |+.|+.|++||+.+++..
T Consensus       271 ~~~~~~~~V-----~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~  314 (420)
T 4gga_A          271 TFTQHQGAV-----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  314 (420)
T ss_dssp             EECCCSSCE-----EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred             eecccCCce-----eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence             2 344443     347788866677665  568999999999998774

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=3e-30  Score=200.81  Aligned_cols=194  Identities=20%  Similarity=0.198  Sum_probs=155.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE------------------------------------------eccCCe
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY------------------------------------------LHERPV   39 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------------------------------~~~~~v   39 (224)
                      +.++.|++|++|+.||+|+|||+++++.+..+                                          +|...+
T Consensus       154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~  233 (420)
T 4gga_A          154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  233 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence            45677889999999999999998876543322                                          456667


Q ss_pred             eEEEEcCCCCcEEEEecCCCEEEEEecCCccc----ceeeccCCcCeEEEEEcCCCCCeEEE--ecCCCcEEEEecCCCc
Q psy11351         40 YGLSVDPSQDAIFASACDDGRVLLFDTRSREE----ATELAVNSGPFHAVMFNPVEARLVAT--ANSKDGIALYDTRKPK  113 (224)
Q Consensus        40 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~v~i~d~~~~~  113 (224)
                      ..+.|+|++ +++++++.|+.+++||..+++.    +.....|...|.+++|+|.+..++++  |+.|+.|++||+++++
T Consensus       234 ~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~  312 (420)
T 4gga_A          234 CGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  312 (420)
T ss_dssp             EEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred             eeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence            777777777 6788888888888888776542    34556788899999999977777776  4579999999999997


Q ss_pred             eeeEeecCCCceeEEEEcCCCCeEeeee--cCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        114 EVLMQYGSCESCMSIRFNKAGTQLLGLR--RRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      ....+. +...+.++.|+|+++.+++++  .|+.|++||+++++++..+ .|.+.|.+     ++|+| ++.+|+||+.|
T Consensus       313 ~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~-----l~~sp-dg~~l~S~s~D  385 (420)
T 4gga_A          313 CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS-----LTMSP-DGATVASAAAD  385 (420)
T ss_dssp             EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE-----EEECT-TSSCEEEEETT
T ss_pred             cceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE-----EEEcC-CCCEEEEEecC
Confidence            766655 456788999999999888765  7899999999999999988 57777665     66777 79999999999


Q ss_pred             CeEEEEeCCCCCe
Q psy11351        191 FVLYMWRVPRDDI  203 (224)
Q Consensus       191 ~~v~iw~~~~~~~  203 (224)
                      ++|++||+.+...
T Consensus       386 ~tvriWdv~~~~~  398 (420)
T 4gga_A          386 ETLRLWRCFELDP  398 (420)
T ss_dssp             TEEEEECCSCSSC
T ss_pred             CeEEEEECCCCCc
Confidence            9999999987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.5e-30  Score=204.14  Aligned_cols=193  Identities=15%  Similarity=0.137  Sum_probs=161.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc---eeeEEe--------------------------------------------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD---PIDFYL--------------------------------------------   34 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~--------------------------------------------   34 (224)
                      +.+..|++|+++ .++.|++||+.+++   .+..+.                                            
T Consensus        11 ~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (450)
T 2vdu_B           11 LTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAA   89 (450)
T ss_dssp             EECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------------
T ss_pred             EecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCc
Confidence            346677766655 57899999999888   444331                                            


Q ss_pred             -----------ccCCeeEEEEcCCCCcE-EEEecCCCEEEEEecC--Ccccceeec--cCCcCeEEEEEcCCCCCeEEEe
Q psy11351         35 -----------HERPVYGLSVDPSQDAI-FASACDDGRVLLFDTR--SREEATELA--VNSGPFHAVMFNPVEARLVATA   98 (224)
Q Consensus        35 -----------~~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~   98 (224)
                                 |.+.|++++|+|++ ++ +++++.|+.|++||+.  +++.+..+.  .|...|.+++|+| ++.+|+++
T Consensus        90 ~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~  167 (450)
T 2vdu_B           90 KVPSPGLGAPPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIA  167 (450)
T ss_dssp             ----------CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEE
T ss_pred             cccCCCCCCCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEE
Confidence                       22369999999999 66 5999999999999999  788777776  5678899999999 88999999


Q ss_pred             cCCCcEEEEecCCCceee----EeecCCCceeEEEEcCC---CCeEeeeecCCCcEEEECCCCCcceec--ccCCcccce
Q psy11351         99 NSKDGIALYDTRKPKEVL----MQYGSCESCMSIRFNKA---GTQLLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSC  169 (224)
Q Consensus        99 ~~dg~v~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~v~d~~~~~~~~~~--~~~~~~~~~  169 (224)
                      +.+|.+++|++.+.+...    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+  .|.+.+.+ 
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~-  246 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS-  246 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE-
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE-
Confidence            999999999998776443    56679999999999999   999999999999999999999888774  46665554 


Q ss_pred             eeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        170 TMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                          ++|+  ++.+|++++.|+.|++||+.+++..
T Consensus       247 ----~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          247 ----ICCG--KDYLLLSAGGDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             ----EEEC--STTEEEEEESSSEEEEEETTTCCEE
T ss_pred             ----EEEC--CCCEEEEEeCCCeEEEEECCCCcEe
Confidence                6777  6899999999999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.6e-31  Score=217.53  Aligned_cols=190  Identities=11%  Similarity=0.175  Sum_probs=160.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCc--eeeEE-eccCCeeEEEEcCC--CCcEEEEecCCCEEEEEecCCcc--cceeeccCC
Q psy11351          7 IKVLRVIGNDDHVISHDMASGD--PIDFY-LHERPVYGLSVDPS--QDAIFASACDDGRVLLFDTRSRE--EATELAVNS   79 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~   79 (224)
                      ++++++|+.||+|++||+.+++  .+..+ +|...|++++|+|+  + +.+++|+.||.|++||++++.  ....+..|.
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~  145 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence            8899999999999999999886  44444 79999999999999  7 899999999999999998874  345567899


Q ss_pred             cCeEEEEEcCC------------CCCeEEEecCCCcEEEEecCCCc----eeeEeecCCCceeEEEEcCC---CCeEeee
Q psy11351         80 GPFHAVMFNPV------------EARLVATANSKDGIALYDTRKPK----EVLMQYGSCESCMSIRFNKA---GTQLLGL  140 (224)
Q Consensus        80 ~~i~~~~~~~~------------~~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~l~~~  140 (224)
                      ..|.+++|+|.            ++.++++|+.||.|++||++++.    ....+..|...|++++|+|+   +++++++
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~  225 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  225 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence            99999999994            37899999999999999998773    34455679999999999999   8999999


Q ss_pred             ecCCCcEEEECCCCCcc-----eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        141 RRRLPPVLYNTRSSSPV-----AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       141 ~~d~~v~v~d~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.|+.|++||++++...     ... .+.+.+.+     ++|+| ++.++++++.||.|++|++..+..
T Consensus       226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~-----l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR-----ASWSL-SGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC-----EEECT-TTCCEEEECSSSCEECCBCCSSSC
T ss_pred             ecCCEEEEecCCCCCCcceeEEeccCCCCCceEE-----EEEcC-CCCEEEEEcCCCEEEEEecCCCCC
Confidence            99999999999886422     111 24555544     67777 799999999999999999986544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=3e-30  Score=208.92  Aligned_cols=193  Identities=12%  Similarity=0.200  Sum_probs=168.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCC----ceeeEE-eccCC-eeEEEEcC--CCCcEEEEecCCCEEEEEecCCc---
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASG----DPIDFY-LHERP-VYGLSVDP--SQDAIFASACDDGRVLLFDTRSR---   69 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~-~~~~~-v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~---   69 (224)
                      ++.++++++|++++ ++.|++||+.++    +....+ +|... |++++|+|  ++ ++|++++.||.|++||+.++   
T Consensus        24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~  101 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKES  101 (615)
T ss_dssp             CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGG
T ss_pred             EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCccc
Confidence            45677889999998 889999999988    777666 89999 99999999  98 89999999999999999755   


Q ss_pred             -----ccceeeccCCcCeEEEEEcCCCCCeEEEecCC----CcEEEEecCCCceeeEeecCCCceeEEEEcCCCC-eEee
Q psy11351         70 -----EEATELAVNSGPFHAVMFNPVEARLVATANSK----DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGT-QLLG  139 (224)
Q Consensus        70 -----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  139 (224)
                           +....+..|...|.+++|+| +++++++++.+    +.|.+||  .++....+..|...|.+++|+|+++ .+++
T Consensus       102 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  178 (615)
T 1pgu_A          102 NSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMT  178 (615)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             ccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEE
Confidence                 56677788999999999999 88999999887    6899998  4556777788999999999999998 7999


Q ss_pred             eecCCCcEEEECCCCCcceec-ccCC---cccceeeeEEEEeCCC-CeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQF-DHEG---YYNSCTMKSCCFAGTQ-DEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~-~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.|+.|++||+++++.+..+ .|..   .+.     .++|+| + +++|++++.|+.|++||+.+++..
T Consensus       179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-----~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~  242 (615)
T 1pgu_A          179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR-----DVEFSP-DSGEFVITVGSDRKISCFDGKSGEFL  242 (615)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEE-----EEEECS-TTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             EeCCCcEEEEeCCCcceeeeecccCCCCceEE-----EEEECC-CCCCEEEEEeCCCeEEEEECCCCCEe
Confidence            999999999999999888887 4555   444     467777 6 999999999999999999998875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-30  Score=192.82  Aligned_cols=184  Identities=12%  Similarity=0.104  Sum_probs=157.2

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcC-CCCcEEEEecCCCEEEEEecCCcccceeecc-CCcCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATELAV-NSGPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i   82 (224)
                      .++++++++.||.|++||  .++....+ .|...+.+++|+| ++ +++++++.|+.|++||  .++....+.. |...+
T Consensus       113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i  187 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV  187 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE
T ss_pred             cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEe--cCceEEEEeccCcccE
Confidence            356899999999999999  55555555 7999999999998 55 8999999999999999  3445566665 88999


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-c
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-D  161 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~  161 (224)
                      .+++|+| ++. +++++.||.|++||+++++....+..|...|.+++|+|++ .+++++.|+.|++||+++++.+..+ .
T Consensus       188 ~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          188 RHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL  264 (313)
T ss_dssp             EEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred             EEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec
Confidence            9999999 666 8899999999999999998888888999999999999999 6889999999999999999988888 4


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +...+.     .++|+| ++. +++++.||.|++||+++++..
T Consensus       265 ~~~~i~-----~~~~~~-~~~-~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          265 PAISIW-----SVDCMS-NGD-IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             SSSCEE-----EEEECT-TSC-EEEEETTSCEEEEESCGGGCC
T ss_pred             cCceEE-----EEEEcc-CCC-EEEEeCCCcEEEEeCCCCcee
Confidence            555544     467777 566 667889999999999988664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=188.94  Aligned_cols=185  Identities=10%  Similarity=0.059  Sum_probs=156.8

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc---ccceeeccCCc
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR---EEATELAVNSG   80 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~   80 (224)
                      .++++|++++.||.|++||+.+++....+ .|...|.+++|+|++ +++++++.|+.|++|++...   +....+..|..
T Consensus        27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~  105 (313)
T 3odt_A           27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG  105 (313)
T ss_dssp             EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS
T ss_pred             cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCCCCcccchhhccc
Confidence            45778999999999999999988877766 899999999999998 89999999999999998765   45677788999


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcC-CCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .|.+++|+   +.++++++.||.|++||  ..+....+..|...+.++.|.| +++++++++.|+.|++||.  .+....
T Consensus       106 ~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~  178 (313)
T 3odt_A          106 NVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKT  178 (313)
T ss_dssp             CEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEE
T ss_pred             CEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEE
Confidence            99999994   46999999999999999  5566777778999999999988 8999999999999999994  344444


Q ss_pred             c--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        160 F--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       160 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +  .+...+.+     ++|+| ++. +++++.|+.|++||+++++..
T Consensus       179 ~~~~~~~~i~~-----~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          179 FSGIHNDVVRH-----LAVVD-DGH-FISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             ECSSCSSCEEE-----EEEEE-TTE-EEEEETTSEEEEEETTTCCEE
T ss_pred             EeccCcccEEE-----EEEcC-CCe-EEEccCCCeEEEEECCchhhh
Confidence            4  25565555     55555 677 899999999999999998775

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=3.3e-30  Score=208.70  Aligned_cols=192  Identities=11%  Similarity=0.113  Sum_probs=167.2

Q ss_pred             CCCC--cceEEEEEeCCCcEEEEeCCCC--------ceeeEE-eccCCeeEEEEcCCCCcEEEEecCC----CEEEEEec
Q psy11351          2 ASGD--PIKVLRVIGNDDHVISHDMASG--------DPIDFY-LHERPVYGLSVDPSQDAIFASACDD----GRVLLFDT   66 (224)
Q Consensus         2 a~~~--~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~   66 (224)
                      +.++  ++++|++++.||+|++||+.++        +....+ .|...|.+++|+|++ ++|++++.+    +.|++|| 
T Consensus        71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d-  148 (615)
T 1pgu_A           71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWD-  148 (615)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETT-
T ss_pred             EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEE-
Confidence            3455  7899999999999999999754        444444 699999999999998 799999887    7899998 


Q ss_pred             CCcccceeeccCCcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCCCceeeEeecCCC---ceeEEEEcCC-CCeEeeee
Q psy11351         67 RSREEATELAVNSGPFHAVMFNPVEAR-LVATANSKDGIALYDTRKPKEVLMQYGSCE---SCMSIRFNKA-GTQLLGLR  141 (224)
Q Consensus        67 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~  141 (224)
                       .++.+..+..|...|.+++|+| ++. ++++++.|+.|++||+++.+....+..|..   .|.+++|+|+ +++|++++
T Consensus       149 -~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          149 -SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             -TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             -CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence             5667788899999999999999 555 899999999999999999988888888988   9999999999 99999999


Q ss_pred             cCCCcEEEECCCCCcceec-----ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        142 RRLPPVLYNTRSSSPVAQF-----DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|+.|++||+++++.+..+     .|...+.     .++|+  ++.+|++++.|+.|++||+.+++..
T Consensus       227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~-----~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIF-----ALSWL--DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBCCCSCEE-----EEEES--SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCCEeEEecccccccCCceE-----EEEEc--CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            9999999999999988887     4555544     46777  5899999999999999999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=7.8e-30  Score=199.30  Aligned_cols=181  Identities=15%  Similarity=0.245  Sum_probs=160.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc---eeeccCCcC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA---TELAVNSGP   81 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~   81 (224)
                      +++++++|+.||+|++||+.+++.+..+ +|...|.+++|++   ..+++|+.||.|++||+++++..   ..+.+|...
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  258 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  258 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc
Confidence            4679999999999999999999988877 8999999999974   58999999999999999988765   667889999


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-  160 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-  160 (224)
                      |.+++|   ++.++++|+.||.|++||+++++....+..|...+.++.|+  ++++++++.|+.|++||+++++.+..+ 
T Consensus       259 v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          259 VNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             EEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence            999999   45799999999999999999999888888999999999994  689999999999999999999998888 


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .|...+.++     +|   ++.+|++|+.||.|++||+.+++
T Consensus       334 ~h~~~v~~~-----~~---~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          334 GHEELVRCI-----RF---DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             CCSSCEEEE-----EC---CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             CCcCcEEEE-----Ee---cCCEEEEEeCCCcEEEEECCCCC
Confidence            466666553     33   67899999999999999997665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.4e-29  Score=192.99  Aligned_cols=192  Identities=14%  Similarity=0.156  Sum_probs=151.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCC----------------C------------------cEEEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQ----------------D------------------AIFAS   54 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----------------~------------------~~l~s   54 (224)
                      ++++++.|++|++||..+++++..+.+...|.+++|+++.                .                  .+++.
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~  152 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVY  152 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEE
T ss_pred             EEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEE
Confidence            3467788899999999999998888888899999998752                0                  12333


Q ss_pred             --ecCCCEEEEEecCCcc---------------c-ceeeccCCcCeEEEEEcCCCCCeEEEecCCCc-EEEEecCCCcee
Q psy11351         55 --ACDDGRVLLFDTRSRE---------------E-ATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEV  115 (224)
Q Consensus        55 --~~~d~~i~iwd~~~~~---------------~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~  115 (224)
                        |+.||.|++||+++++               + +..+.+|...|.+++|+| ++.+|++|+.|+. |++||+++++.+
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEE
Confidence              6788999999988765               2 677889999999999999 8999999999998 999999999888


Q ss_pred             eEee-c-CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce--eccc------CCccc-----------ceeeeEE
Q psy11351        116 LMQY-G-SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA--QFDH------EGYYN-----------SCTMKSC  174 (224)
Q Consensus       116 ~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~--~~~~------~~~~~-----------~~~~~~~  174 (224)
                      ..+. + |...|.+++|+|++++|++++.|++|++||++.+....  .+..      .....           ......+
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI  311 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence            8887 4 99999999999999999999999999999997653211  1100      00000           0001347


Q ss_pred             EEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        175 CFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       175 ~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +|++ ++.++++++.||.+++|++..++
T Consensus       312 a~~~-d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          312 AWIS-ESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence            8888 69999999999999999987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.9e-30  Score=195.18  Aligned_cols=188  Identities=9%  Similarity=-0.033  Sum_probs=156.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc----eeeEEeccCCeeEEEEcCCCCc-EEEEecCCCEEEEEec-CCcccceee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD----PIDFYLHERPVYGLSVDPSQDA-IFASACDDGRVLLFDT-RSREEATEL   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~   75 (224)
                      +.++.+++|++++.||.|++||+.+++    .....+|...|++++|+|++ + +|++|+.||.|++||+ .+++ ...+
T Consensus        18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~-~~~~   95 (342)
T 1yfq_A           18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPS-FQAL   95 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSS-EEEC
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCc-eEec
Confidence            345678899999999999999999887    55555999999999999998 8 9999999999999999 7765 4677


Q ss_pred             cc--CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC---------CceeeEeecCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         76 AV--NSGPFHAVMFNPVEARLVATANSKDGIALYDTRK---------PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        76 ~~--~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                      ..  |...|.+++|+|  +.++++++.|+.|++||+++         .+....+. +...+.+++|+|++  +++++.|+
T Consensus        96 ~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~  170 (342)
T 1yfq_A           96 TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNS  170 (342)
T ss_dssp             BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTT
T ss_pred             cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCC
Confidence            78  999999999999  78999999999999999986         54444333 88999999999987  89999999


Q ss_pred             CcEEEECCC-CCcceec---ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        145 PPVLYNTRS-SSPVAQF---DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       145 ~v~v~d~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .|++||+++ +......   .+...     +..++|+|.+++++++++.||.+++|+++..
T Consensus       171 ~i~i~d~~~~~~~~~~~~~~~~~~~-----i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          171 QVQWFRLPLCEDDNGTIEESGLKYQ-----IRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEEESSCCTTCCCEEEECSCSSC-----EEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eEEEEECCccccccceeeecCCCCc-----eeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            999999988 5543222   34443     3457888723789999999999999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.9e-30  Score=214.65  Aligned_cols=194  Identities=16%  Similarity=0.166  Sum_probs=154.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceee--EE----------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPID--FY----------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~----------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      ++...+++|++|+.|++|++||+.+++...  .+          +|...|++++|+|++ ++||+|+.||+|+|||+.++
T Consensus       442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEEC
T ss_pred             cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCc
Confidence            446678999999999999999998875321  11          688899999999999 89999999999999999866


Q ss_pred             c---------------------------------------------cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcE
Q psy11351         70 E---------------------------------------------EATELAVNSGPFHAVMFNPVEARLVATANSKDGI  104 (224)
Q Consensus        70 ~---------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  104 (224)
                      +                                             ++..+.+|.+.|++++|+| ++ +||+|+.|+.|
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv  598 (902)
T 2oaj_A          521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSL  598 (902)
T ss_dssp             CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEE
T ss_pred             cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcE
Confidence            2                                             2556778999999999999 88 99999999999


Q ss_pred             EEEecCCCceee-----Eee-cCCCceeEEEEc-----CCC---CeEeeeecCCCcEEEEC---CCCCcceec-cc----
Q psy11351        105 ALYDTRKPKEVL-----MQY-GSCESCMSIRFN-----KAG---TQLLGLRRRLPPVLYNT---RSSSPVAQF-DH----  162 (224)
Q Consensus       105 ~i~d~~~~~~~~-----~~~-~~~~~v~~~~~~-----~~~---~~l~~~~~d~~v~v~d~---~~~~~~~~~-~~----  162 (224)
                      ++||+++...+.     .+. +|...|++++|+     |||   ++|++++.|++|++||+   .+|+....+ .|    
T Consensus       599 ~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~  678 (902)
T 2oaj_A          599 MLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVT  678 (902)
T ss_dssp             EEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECC
T ss_pred             EEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecC
Confidence            999998775443     122 788999999999     885   89999999999999999   677766665 33    


Q ss_pred             -CCcccceeeeEEEEeC---------------------CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        163 -EGYYNSCTMKSCCFAG---------------------TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       163 -~~~~~~~~~~~~~~~~---------------------~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .+.+..+.    .|+.                     .++.+|+++  +..+++|++.+++..
T Consensus       679 ~~~~v~~i~----~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~  736 (902)
T 2oaj_A          679 SKGPIHKID----AFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKST  736 (902)
T ss_dssp             SSCCCCEEE----EEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEE
T ss_pred             CCCceEEEE----eEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccce
Confidence             34444322    1220                     134455554  778999999998775

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9e-30  Score=194.06  Aligned_cols=191  Identities=9%  Similarity=0.080  Sum_probs=153.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ++++++++|++|+.|+ ++|||+++++......+ ..+..+++.+++..++++++.|++|++||.++++.+..+. +...
T Consensus        26 ~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~  102 (355)
T 3vu4_A           26 EFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAP  102 (355)
T ss_dssp             EECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSC
T ss_pred             EECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCc
Confidence            5678889999998775 88999988766554433 3588888998874444778889999999999998887775 5667


Q ss_pred             eEEEEEcCCCC-----------------------------------CeEEE--ecCCCcEEEEecCCCc-----------
Q psy11351         82 FHAVMFNPVEA-----------------------------------RLVAT--ANSKDGIALYDTRKPK-----------  113 (224)
Q Consensus        82 i~~~~~~~~~~-----------------------------------~~l~~--~~~dg~v~i~d~~~~~-----------  113 (224)
                      |.+++|++ +.                                   .+++.  |+.+|.|++||+++++           
T Consensus       103 v~~v~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          103 VKDLFLSR-EFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             EEEEEECS-SEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------------
T ss_pred             eEEEEEcC-CEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            88888876 31                                   23333  6788999999998764           


Q ss_pred             -----eeeEeecCCCceeEEEEcCCCCeEeeeecCCC-cEEEECCCCCcceecc---cCCcccceeeeEEEEeCCCCeEE
Q psy11351        114 -----EVLMQYGSCESCMSIRFNKAGTQLLGLRRRLP-PVLYNTRSSSPVAQFD---HEGYYNSCTMKSCCFAGTQDEYV  184 (224)
Q Consensus       114 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l  184 (224)
                           ....+.+|...|.+++|+|+|++|++++.|++ |++||+++++.+..+.   |.+.+.+     ++|+| ++++|
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~-----~~~s~-~~~~l  255 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD-----MKWST-DGSKL  255 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEE-----EEECT-TSCEE
T ss_pred             cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEE-----EEECC-CCCEE
Confidence                 15667789999999999999999999999999 9999999999998884   6665554     67777 79999


Q ss_pred             EEcCCCCeEEEEeCCCCC
Q psy11351        185 VSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       185 ~s~~~d~~v~iw~~~~~~  202 (224)
                      ++++.|+.|++||+..+.
T Consensus       256 ~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          256 AVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEETTCEEEEEESSCCS
T ss_pred             EEEECCCEEEEEEccCCC
Confidence            999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.7e-29  Score=194.46  Aligned_cols=182  Identities=13%  Similarity=0.222  Sum_probs=162.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ++++++|+.||+|++||+.+++.+..+ +|...|.+++|++   +.+++|+.|++|++||+++++.+..+.+|...|.++
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence            468999999999999999999988877 8999999999963   689999999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEG  164 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~  164 (224)
                      +|   ++.++++++.||.|++||+++++....+..|...|.+++|  ++.++++++.|+.|++||+++++.+..+ .|..
T Consensus       246 ~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  320 (445)
T 2ovr_B          246 QY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS  320 (445)
T ss_dssp             EE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             EE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence            99   4578999999999999999999888888889999999999  7899999999999999999999988887 4555


Q ss_pred             cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        165 YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+..     +.+   +++++++|+.||.|++||+++++..
T Consensus       321 ~v~~-----~~~---~~~~l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          321 LTSG-----MEL---KDNILVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             CEEE-----EEE---ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             cEEE-----EEE---eCCEEEEEeCCCeEEEEECCCCcEE
Confidence            4443     222   4679999999999999999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=196.26  Aligned_cols=192  Identities=14%  Similarity=0.132  Sum_probs=155.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEE--cCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSV--DPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +..+.+++|++++.||.|++||+.+++.+...+|...|.+++|  +|++ ++|++++.|+.|++||+++++.+..+..+.
T Consensus        93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  171 (368)
T 3mmy_A           93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE  171 (368)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred             EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence            4566788999999999999999999998888899999999999  8888 899999999999999999887666554332


Q ss_pred             -----------------------------------------cCeEEEEEcCCCCCe----EEEecCCCcEEEEecCCC--
Q psy11351         80 -----------------------------------------GPFHAVMFNPVEARL----VATANSKDGIALYDTRKP--  112 (224)
Q Consensus        80 -----------------------------------------~~i~~~~~~~~~~~~----l~~~~~dg~v~i~d~~~~--  112 (224)
                                                               ..+.++++.+ ....    +++++.||.|++||++..  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence                                                     2334444444 3333    899999999999999876  


Q ss_pred             -ceeeEeecCCC------------ceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeC
Q psy11351        113 -KEVLMQYGSCE------------SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       113 -~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  178 (224)
                       .....+..|..            .|.+++|+|++++|++++.|+.|++||+++++++..+ .|...+.+     ++|+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~  325 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA-----CCFNH  325 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE-----EEECT
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE-----EEECC
Confidence             34555555554            7999999999999999999999999999999988888 46665554     67777


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                       ++.+|++++.|+..+.|++...
T Consensus       326 -~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          326 -NGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             -TSSCEEEEECCCSTTCGGGCCT
T ss_pred             -CCCeEEEEecccccccccccCC
Confidence             7999999999886666665443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=199.75  Aligned_cols=182  Identities=8%  Similarity=0.039  Sum_probs=149.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccC-----CeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc-----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHER-----PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-----   71 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----   71 (224)
                      +.+++|++||+++.||+|++||.+.  ++..+.|..     .+.+++|+|+| ++|++|+.||+|+|||+.+++.     
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccc
Confidence            5678999999999999999999654  444444544     49999999999 8999999999999999998753     


Q ss_pred             --ceee----ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce---eeEee-cCCCceeEEEEcCCCCeEeeee
Q psy11351         72 --ATEL----AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE---VLMQY-GSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        72 --~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                        +.++    .+|...|.+++|+| ++  +++++.|+.|++||+...+.   ...+. .|...|.+++|+  |+.|++++
T Consensus       169 i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             eeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence              4555    66778999999999 76  77888999999999987763   23443 688899999999  68888887


Q ss_pred             cCCCcEEEECCCCCc-ceecccCCcccceeeeEEEE--eCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        142 RRLPPVLYNTRSSSP-VAQFDHEGYYNSCTMKSCCF--AGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                       ++.|++||+.+++. ...++|...+..+     .|  +| ++..++++++||. ++|..+
T Consensus       244 -~~tIkLWd~~~~~~~~~~~gh~~~V~~v-----a~~~s~-d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          244 -PGYVHKIDLKNYSISSLKTGSLENFHII-----PLNHEK-ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -SSEEEEEETTTTEEEEEECSCCSCCCEE-----EETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred             -CCeEEEEECCCCeEEEEEcCCCceEEEE-----EeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence             68999999998877 4444777777764     44  55 7899999999999 999976

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.9e-29  Score=218.91  Aligned_cols=192  Identities=18%  Similarity=0.249  Sum_probs=168.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCC-CcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQ-DAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +++++++++++++.||+|++||+.+++.+..+ +|...|.+++|+|++ ..++++|+.|+.|++||+++++....+.+|.
T Consensus       664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            45678899999999999999999999998887 899999999999953 2689999999999999999999999999999


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-----------------------------------------
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-----------------------------------------  118 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-----------------------------------------  118 (224)
                      ..|.+++|+| ++.++++++.||.|++||+++++....+                                         
T Consensus       744 ~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~  822 (1249)
T 3sfz_A          744 NSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL  822 (1249)
T ss_dssp             SCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEE
T ss_pred             CCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEE
Confidence            9999999999 8999999999999999999876433221                                         


Q ss_pred             --------------ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeE
Q psy11351        119 --------------YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEY  183 (224)
Q Consensus       119 --------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  183 (224)
                                    .+|...+.+++|+|+++++++++.|+.|++||+.++..+..+ .|.+.+.+     ++|+| ++.+
T Consensus       823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~-----v~~sp-dg~~  896 (1249)
T 3sfz_A          823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG-----VMFSP-DGSS  896 (1249)
T ss_dssp             EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE-----EEECT-TSSE
T ss_pred             EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE-----EEECC-CCCE
Confidence                          146778899999999999999999999999999999888877 56666555     66677 7999


Q ss_pred             EEEcCCCCeEEEEeCCC
Q psy11351        184 VVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       184 l~s~~~d~~v~iw~~~~  200 (224)
                      |++++.|+.|++|++.+
T Consensus       897 l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          897 FLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEEETTSCEEEEEHHH
T ss_pred             EEEEeCCCeEEEEEccc
Confidence            99999999999999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-29  Score=197.06  Aligned_cols=187  Identities=14%  Similarity=0.059  Sum_probs=146.5

Q ss_pred             CCCCcceEEEEEeCCCcEE-----------------E----------EeCCCCceee--EEeccCCeeEEEEcCCCCcEE
Q psy11351          2 ASGDPIKVLRVIGNDDHVI-----------------S----------HDMASGDPID--FYLHERPVYGLSVDPSQDAIF   52 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~-----------------i----------wd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l   52 (224)
                      +.+++|+++|+++.|++|+                 +          |++.+++...  .+.|...|.+++|+|+| ++|
T Consensus        22 ~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG-~~L  100 (588)
T 2j04_A           22 TWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWM  100 (588)
T ss_dssp             EECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSS-SCE
T ss_pred             EECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCC-CEE
Confidence            5678999999999999995                 1          2222222111  22567889999999999 899


Q ss_pred             EEecCCCEEEEEecCCcccceeeccCCc-----CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-------eeEe--
Q psy11351         53 ASACDDGRVLLFDTRSREEATELAVNSG-----PFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-------VLMQ--  118 (224)
Q Consensus        53 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-------~~~~--  118 (224)
                      |+++.||.|++||...  .+..+. |..     .+.+++|+| ++++|++|+.||.|++||+..++.       +..+  
T Consensus       101 As~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A          101 AVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL  176 (588)
T ss_dssp             EEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred             EEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence            9999999999999544  555556 554     599999999 999999999999999999998742       3444  


Q ss_pred             --ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc---eec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        119 --YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV---AQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       119 --~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                        .+|...|.+++|+|+|  +++++.|+.|++||+.+++..   .++  .|...|.+     ++|+   ++.|++++ ++
T Consensus       177 ~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s-----vaFs---g~~LASa~-~~  245 (588)
T 2j04_A          177 SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD-----LKIV---DYKVVLTC-PG  245 (588)
T ss_dssp             SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC-----EEEE---TTEEEEEC-SS
T ss_pred             ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE-----EEEE---CCEEEEEe-CC
Confidence              4577899999999999  888899999999999887743   234  35556665     5555   47888887 69


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      .|++||+.+++..
T Consensus       246 tIkLWd~~~~~~~  258 (588)
T 2j04_A          246 YVHKIDLKNYSIS  258 (588)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEE
Confidence            9999999998773

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.4e-29  Score=195.43  Aligned_cols=186  Identities=12%  Similarity=0.056  Sum_probs=133.5

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceee-EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee----------
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPID-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE----------   74 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------   74 (224)
                      ++++||+|+.|++|+|||+.++.++. .++|...+.+++|+|++.++|++++.|++|++||+++++....          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            57899999999999999998776655 4489999999999999856899999999999999987653221          


Q ss_pred             ---------------eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeE------------
Q psy11351         75 ---------------LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMS------------  127 (224)
Q Consensus        75 ---------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~------------  127 (224)
                                     ..+|...+.++.|.+.++..+++++.|+.+++||++.++....+..+...+..            
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                           23567788899987448999999999999999999876654444433333322            


Q ss_pred             ------EEEcC--CCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        128 ------IRFNK--AGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       128 ------~~~~~--~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                            ..|+|  ++.++++++.|+.|++||+.+++..... .|...|.     .++|+| ++++|++++.+| +.+|.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~-----svafsp-dG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV-----DFCWHQ-DGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE-----EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE-----EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence                  23333  2346677888999999999999887766 5666554     477888 799999998776 555554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=5.9e-29  Score=190.24  Aligned_cols=183  Identities=13%  Similarity=0.091  Sum_probs=141.1

Q ss_pred             EEeCCCcEEEEeCCCCceee-EE---------eccCCeeEEEEcCCCCcEEE--EecCCCEEEEEecCCcccceeeccCC
Q psy11351         12 VIGNDDHVISHDMASGDPID-FY---------LHERPVYGLSVDPSQDAIFA--SACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus        12 ~~~~dg~i~iwd~~~~~~~~-~~---------~~~~~v~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +++.|+++|+|++.+.+... ..         .+...+.+++|+|+| ++++  +++.|++|+|||+++++++..+. |.
T Consensus        99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~  176 (365)
T 4h5i_A           99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TR  176 (365)
T ss_dssp             HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEEEEEE-CS
T ss_pred             EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEEEEeC-CC
Confidence            34568889999987654221 11         244568999999999 6654  55689999999999999887775 67


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe--ecCCCceeEEEEcCCCCeEeeeecCC----CcEEEECCC
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ--YGSCESCMSIRFNKAGTQLLGLRRRL----PPVLYNTRS  153 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~v~d~~~  153 (224)
                      ..|.+++|+| +++++++++. +.+.+|+..+++.....  ..|...+.+++|+|+++++++++.|+    .+++|++..
T Consensus       177 ~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          177 GEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             SCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             CceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence            8899999999 8999999975 45677777766655433  35788999999999999999998887    478888876


Q ss_pred             CCcce----ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSPVA----QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .....    .+ .|...+.     .++|+| ++++|++|+.|+.|+|||++++++.
T Consensus       255 ~~~~~~~~~~~~~~~~~V~-----~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          255 GNTSVLRSKQVTNRFKGIT-----SMDVDM-KGELAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             TEEEEEEEEEEESSCSCEE-----EEEECT-TSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceecceeeeeecCCCCCeE-----eEEECC-CCCceEEEcCCCEEEEEECCCCcEE
Confidence            54321    22 3445444     467777 7999999999999999999998775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5.3e-27  Score=180.53  Aligned_cols=189  Identities=13%  Similarity=0.147  Sum_probs=154.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      ..++++++.|++|++||+.+++.+..+.+...+.+++|+|++..++++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            3578899999999999999999988886666799999999994445788899999999999999888876655 899999


Q ss_pred             EcCCCCCeE-EEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeE-eeeecCCCcEEEECCCCCcceecccCC
Q psy11351         87 FNPVEARLV-ATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL-LGLRRRLPPVLYNTRSSSPVAQFDHEG  164 (224)
Q Consensus        87 ~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~v~d~~~~~~~~~~~~~~  164 (224)
                      |+| +++++ ++++.++.|++||+.+++....+. +...+.+++|+|+++.+ ++++.++.|++||+++++.+..+....
T Consensus        81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  158 (391)
T 1l0q_A           81 VSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR  158 (391)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             ECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence            999 66655 566678999999999887665555 44578999999999977 677789999999999998877774433


Q ss_pred             cccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCCCCCeE
Q psy11351        165 YYNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+     ..++|+| +++++ ++++.|+.|++||+.+++..
T Consensus       159 ~~-----~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          159 SP-----KGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVI  193 (391)
T ss_dssp             SE-----EEEEECT-TSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             Cc-----ceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            33     3477888 56555 78889999999999988664

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=1.5e-27  Score=179.92  Aligned_cols=166  Identities=17%  Similarity=0.241  Sum_probs=136.9

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----cceeeccCCcCeEEEEEcCC-CCCeEEEecCCCcEEEEe
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----EATELAVNSGPFHAVMFNPV-EARLVATANSKDGIALYD  108 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~i~d  108 (224)
                      +|.+.|++++|+|++ ++|++|+.||.|++||++++.    ....+.+|...|.+++|+|. ++.+|++++.||.|++||
T Consensus         9 gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             ccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            899999999999998 899999999999999998763    55667889999999999994 389999999999999999


Q ss_pred             cCCC---------ceeeEeecCCCceeEEEEcCC--CCeEeeeecCCCcEEEECCCCCcceecc--------------c-
Q psy11351        109 TRKP---------KEVLMQYGSCESCMSIRFNKA--GTQLLGLRRRLPPVLYNTRSSSPVAQFD--------------H-  162 (224)
Q Consensus       109 ~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~v~d~~~~~~~~~~~--------------~-  162 (224)
                      ++++         +....+..|...|.+++|+|+  +++|++++.|+.|++||+++++.+..+.              + 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            9876         345666689999999999999  9999999999999999998765432210              0 


Q ss_pred             ---------------------------------CCc--------ccceeeeEEEEeCCCC----eEEEEcCCCCeEEEEe
Q psy11351        163 ---------------------------------EGY--------YNSCTMKSCCFAGTQD----EYVVSGSDDFVLYMWR  197 (224)
Q Consensus       163 ---------------------------------~~~--------~~~~~~~~~~~~~~~~----~~l~s~~~d~~v~iw~  197 (224)
                                                       .+.        -..-.+..++|+| ++    ++|++++.||.|++||
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEe
Confidence                                             000        0111245678888 55    8999999999999999


Q ss_pred             CCCC
Q psy11351        198 VPRD  201 (224)
Q Consensus       198 ~~~~  201 (224)
                      ++++
T Consensus       247 ~~~~  250 (351)
T 3f3f_A          247 ITEK  250 (351)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            9875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.5e-27  Score=180.03  Aligned_cols=194  Identities=12%  Similarity=0.103  Sum_probs=157.0

Q ss_pred             CCCCcceEE-EEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVL-RVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.+..++++ ++++.|++|++||+.+++.+..+.+...+.+++|+|++..++++++.++.|++||+.+++.+..+..+ .
T Consensus        38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~  116 (391)
T 1l0q_A           38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K  116 (391)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S
T ss_pred             EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-C
Confidence            456677765 67779999999999999998888666699999999999444567778899999999999887777654 4


Q ss_pred             CeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeE-eeeecCCCcEEEECCCCCcce
Q psy11351         81 PFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL-LGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      .+.+++|+| +++.+ ++++.++.|++||+++++....+..+ ..+.+++|+|+++++ ++++.++.|++||+++++...
T Consensus       117 ~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          117 SPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (391)
T ss_dssp             SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence            689999999 66655 78888999999999988766665544 567999999999987 566778999999999988877


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcC---CCCeEEEEeCCCCCeE
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGS---DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~v~iw~~~~~~~~  204 (224)
                      .+.+...+.     .++|+| +++++++++   .++.|++||+.+++..
T Consensus       195 ~~~~~~~~~-----~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          195 TVKVEAAPS-----GIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             EEECSSEEE-----EEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             EEecCCCcc-----ceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            775544433     467777 677777776   6899999999988664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.2e-27  Score=184.07  Aligned_cols=195  Identities=13%  Similarity=0.135  Sum_probs=160.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE------eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY------LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      +.++.+.++++++.|++|++||+.+++.....      +|...|.+++|+|++ .++++++.|+.|++||+++++.+..+
T Consensus       129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~  207 (433)
T 3bws_A          129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATV  207 (433)
T ss_dssp             EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred             EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEE
Confidence            34456678888888999999999999887632      678899999999998 89999999999999999999988888


Q ss_pred             ccCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee--------cCCCc
Q psy11351         76 AVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR--------RRLPP  146 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~v  146 (224)
                      ..|...+.+++|+| ++..+ ++++.++.|++||+++++....+. ....+.+++|+|+++++++++        .|+.|
T Consensus       208 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          208 DLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             ECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred             cCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence            88889999999999 66655 566689999999999886655544 455689999999999999887        47889


Q ss_pred             EEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        147 VLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       147 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++||+++++.+..+.+...+     ..++|+|....++++++.|+.|++||+.+++..
T Consensus       286 ~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          286 GIYSMDKEKLIDTIGPPGNK-----RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             EEEETTTTEEEEEEEEEECE-----EEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEECCCCcEEeeccCCCCc-----ceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence            99999998877766544433     347788843356788899999999999988664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=3.7e-27  Score=175.03  Aligned_cols=142  Identities=9%  Similarity=0.108  Sum_probs=114.8

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-ec---cCCeeEEEEcCCCCcEE------------EEecCCCEEEEEecCCc
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LH---ERPVYGLSVDPSQDAIF------------ASACDDGRVLLFDTRSR   69 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~---~~~v~~~~~~~~~~~~l------------~s~~~d~~i~iwd~~~~   69 (224)
                      .+++|++++.|++|+|||++++++++.+ +|   ...+.+++|+|++ .++            ++|+.|++|++||..++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            5678999999999999999999999888 33   3467788999998 665            67889999999999999


Q ss_pred             ccceee-----ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCcee-EEEEcCCCCeEeeeecC
Q psy11351         70 EEATEL-----AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCM-SIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        70 ~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d  143 (224)
                      +.+..+     .+|...+.+..+   ++.++++++.|++|+|||+++++.+..+.+|...+. +++|+|+|++|++|+.|
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D  347 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD  347 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred             EEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence            876554     356655544444   367899999999999999999998888888877655 68999999999999999


Q ss_pred             CCcEEEEC
Q psy11351        144 LPPVLYNT  151 (224)
Q Consensus       144 ~~v~v~d~  151 (224)
                      ++|++||+
T Consensus       348 ~TIklWd~  355 (356)
T 2w18_A          348 GNIFVYHY  355 (356)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEecC
Confidence            99999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.95  E-value=1.1e-26  Score=181.30  Aligned_cols=196  Identities=15%  Similarity=0.126  Sum_probs=148.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC-----------c-----eeeEEeccCCeeEEEEcCCCCcEEE----EecCCCEE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG-----------D-----PIDFYLHERPVYGLSVDPSQDAIFA----SACDDGRV   61 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~-----------~-----~~~~~~~~~~v~~~~~~~~~~~~l~----s~~~d~~i   61 (224)
                      |++..+.++++++.|+ +++|+....           .     ....+.+...|++++|+|++ ++|+    +|+.|+.|
T Consensus        43 avs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v  120 (434)
T 2oit_A           43 AVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMSSEYGSII  120 (434)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEETTTEEEE
T ss_pred             EEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEeccCCCceE
Confidence            4556677889998887 999875311           1     11223567789999999998 7888    89999999


Q ss_pred             EEEecCCc--------cc---ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEE
Q psy11351         62 LLFDTRSR--------EE---ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRF  130 (224)
Q Consensus        62 ~iwd~~~~--------~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~  130 (224)
                      ++||++++        ++   ...+.+|...|.+++|+|.++.+|++++.||.|++||++++........|...|.+++|
T Consensus       121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w  200 (434)
T 2oit_A          121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW  200 (434)
T ss_dssp             EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE
T ss_pred             EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE
Confidence            99999765        22   34556789999999999954899999999999999999988766666678899999999


Q ss_pred             cCCCCeEeeeecCCCcEEEECCCCCcceecc-cCCc--ccceeeeEEEEeCCCCeEEEE-cCCCC------eEEEEeCCC
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGY--YNSCTMKSCCFAGTQDEYVVS-GSDDF------VLYMWRVPR  200 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~s-~~~d~------~v~iw~~~~  200 (224)
                      +|+|++|++++.|+.|++||++ ++....+. +...  -....+..++|++ ++.++++ .+.||      .+++|++.+
T Consensus       201 spdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEecc
Confidence            9999999999999999999998 55554442 2110  0123455678887 5666643 33332      489999986


Q ss_pred             C
Q psy11351        201 D  201 (224)
Q Consensus       201 ~  201 (224)
                      .
T Consensus       279 ~  279 (434)
T 2oit_A          279 K  279 (434)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=4.4e-26  Score=177.63  Aligned_cols=193  Identities=11%  Similarity=0.082  Sum_probs=156.6

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ..+.++++++++.|+.|++||+++++.+..+ .|...+.+++|+|++..++++++.|+.|++||+++++.+..+..+ ..
T Consensus       177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~  255 (433)
T 3bws_A          177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL  255 (433)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE
T ss_pred             EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC
Confidence            3556789999999999999999999888777 688999999999998444467778999999999999887777654 45


Q ss_pred             eEEEEEcCCCCCeEEEec--------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeE-eeeecCCCcEEEECC
Q psy11351         82 FHAVMFNPVEARLVATAN--------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL-LGLRRRLPPVLYNTR  152 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~--------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~v~d~~  152 (224)
                      +.+++|+| +++.+++++        .|+.|++||+++++.... ..+...+.+++|+|+++.+ ++++.++.|++||++
T Consensus       256 ~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          256 PRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             EEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            89999999 788888877        588999999998865444 3455688999999999765 555889999999999


Q ss_pred             CCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC---------------CCeEEEEeCCCCCeE
Q psy11351        153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD---------------DFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------------d~~v~iw~~~~~~~~  204 (224)
                      +++.+..+.+...+.     .++|+| +++++++++.               ||.|++||+.+++..
T Consensus       334 ~~~~~~~~~~~~~~~-----~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          334 EKKVQKSIPVFDKPN-----TIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             TTEEEEEEECSSSEE-----EEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred             CCcEEEEecCCCCCC-----eEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence            988877776555443     477777 6777776655               579999999988764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=5.6e-24  Score=165.27  Aligned_cols=188  Identities=8%  Similarity=0.004  Sum_probs=145.4

Q ss_pred             ceEEEEEeCC------CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC---EEEEEecCCcccceeecc
Q psy11351          7 IKVLRVIGND------DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG---RVLLFDTRSREEATELAV   77 (224)
Q Consensus         7 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~   77 (224)
                      +..++.++.+      ++|++||+..+......+|...+.+++|+|++ +.|++++.++   .|++||+++++.. .+..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~  220 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR-QVAS  220 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence            4556666554      79999999876655555899999999999999 7888888775   9999999988764 5667


Q ss_pred             CCcCeEEEEEcCCCCCeEE-EecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CC--CcEEEEC
Q psy11351         78 NSGPFHAVMFNPVEARLVA-TANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RL--PPVLYNT  151 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~-~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~v~d~  151 (224)
                      |...+.+++|+| +++.|+ +++.++.  |++||+++++. ..+..+...+.+++|+|+|++|++++. ++  .|++||+
T Consensus       221 ~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          221 FPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            788899999999 777666 6666655  99999988754 566678889999999999999988875 44  4777788


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC---CeEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD---FVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~v~iw~~~~~~~~  204 (224)
                      .+++......+...     ...++|+| ++++|+.++.+   ..|++||+.+++..
T Consensus       299 ~~~~~~~l~~~~~~-----~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          299 NGGAPQRITWEGSQ-----NQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             TSSCCEECCCSSSE-----EEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             CCCCEEEEecCCCc-----ccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            87764332233332     33478888 68888877654   68999999988763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=4.2e-24  Score=165.97  Aligned_cols=191  Identities=9%  Similarity=0.009  Sum_probs=149.8

Q ss_pred             CCCCcceEEEEEeCCC---cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEE-EecCCC--EEEEEecCCcccceee
Q psy11351          2 ASGDPIKVLRVIGNDD---HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFA-SACDDG--RVLLFDTRSREEATEL   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~   75 (224)
                      +.+++|++|++++.|+   .|++||+.+++......|...+.+++|+|++ +.|+ +++.++  .|++||+++++. ..+
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-~~l  262 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-RQV  262 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-EEC
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-EeC
Confidence            4567889999999885   9999999999887766888999999999999 5555 776655  499999988765 566


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecC-CC--cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC---CCcEEE
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANS-KD--GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR---LPPVLY  149 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~v~  149 (224)
                      ..|...+.+++|+| +++.|+.++. ++  .|.+||+.+++ ...+..+...+.+++|+|+|++|++++.+   ..|++|
T Consensus       263 ~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          263 TDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             cCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence            77888999999999 7887777765 45  57777988764 34455567789999999999999988764   579999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC---eEEEEeCCCCCe
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF---VLYMWRVPRDDI  203 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~v~iw~~~~~~~  203 (224)
                      |+.+++......+ ..     ...++|+| ++++|++++.++   .|++||+..+..
T Consensus       341 d~~~~~~~~l~~~-~~-----~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          341 DLATGGVQVLSST-FL-----DETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             ETTTCCEEECCCS-SS-----CEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ECCCCCEEEecCC-CC-----cCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            9998876432233 22     34478888 688888887776   899999986544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=161.63  Aligned_cols=151  Identities=13%  Similarity=0.165  Sum_probs=127.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceee-----EEeccCCeeEEEEcCCCCcEE--EEecCCCEEEEEecCCcccceee
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPID-----FYLHERPVYGLSVDPSQDAIF--ASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      ....++++++++.||+|++||+.+++...     ...+.+.|.++.++|.+...+  ++++.+++|++||.+........
T Consensus       158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred             EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence            35667899999999999999998876432     226888999999999876654  56788999999999887755444


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEe--cCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATA--NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                       .+...+..+.|+| .+..++++  +.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+
T Consensus       238 -~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          238 -DAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             -ECSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -cceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence             4567799999999 66655543  4799999999999999999999999999999999999999999999999999976


Q ss_pred             CC
Q psy11351        154 SS  155 (224)
Q Consensus       154 ~~  155 (224)
                      ..
T Consensus       316 ~d  317 (318)
T 4ggc_A          316 LD  317 (318)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=5.7e-22  Score=150.24  Aligned_cols=201  Identities=9%  Similarity=0.069  Sum_probs=153.8

Q ss_pred             CCCCcceEEEEEeC-------CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          2 ASGDPIKVLRVIGN-------DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      +.+..++++++++.       ++.|.+||..+++.+..+.....+..++|+|++..++++...++.|.+||..+++.+..
T Consensus        47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  126 (353)
T 3vgz_A           47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR  126 (353)
T ss_dssp             EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE
Confidence            34566777776663       56899999999998888876677899999999944667777789999999999987777


Q ss_pred             eccCCcC---------eEEEEEcCCCCCeEEEec--CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC
Q psy11351         75 LAVNSGP---------FHAVMFNPVEARLVATAN--SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        75 ~~~~~~~---------i~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      +..+...         +.+++|+| +++.+++++  .++.|.+||+.+++....+..+...+..++|+|+++++++++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  205 (353)
T 3vgz_A          127 LVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD  205 (353)
T ss_dssp             EESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT
T ss_pred             EecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC
Confidence            7654322         68899999 666665554  57889999999887766665466668899999999999999999


Q ss_pred             CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeE-EEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEY-VVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+.+||+.+++....+.....-.......++|+| ++++ +++...++.|.+||+.+++..
T Consensus       206 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            99999999999887776321110111234578888 4654 555556699999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=2.8e-22  Score=160.41  Aligned_cols=192  Identities=8%  Similarity=0.066  Sum_probs=152.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeC--CCCceeeEEeccCCeeEEEEcC----CCCcEEEEec-CCCEEEEEecCCccccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDM--ASGDPIDFYLHERPVYGLSVDP----SQDAIFASAC-DDGRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~   74 (224)
                      +++.++++|++++.|++|++||+  .+++.+..+.+...+..++|+|    ++ +++++++ .+++|.+||..+++++..
T Consensus       185 ~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          185 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecccccccee
Confidence            56788999999999999999999  8888888777777889999999    98 7777776 589999999999988777


Q ss_pred             ecc----------CC-cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeee-
Q psy11351         75 LAV----------NS-GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLR-  141 (224)
Q Consensus        75 ~~~----------~~-~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-  141 (224)
                      +..          |. ..+..+.++|++..++++...++.|.+||+.+.+.+. ....+...+..+.|+|+|+++++++ 
T Consensus       264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG
T ss_pred             ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec
Confidence            754          22 2789999999667778888899999999998765443 1224566788999999999877654 


Q ss_pred             cCCCcEEEECCCCCcceecc-----cCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCC
Q psy11351        142 RRLPPVLYNTRSSSPVAQFD-----HEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPR  200 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~  200 (224)
                      .+++|.+||+.+++.+..+.     |.+.  ...+    ++|..+.+++++. .|++|.+||+.+
T Consensus       344 ~~~~v~v~D~~tg~l~~~i~~g~~ph~g~--g~~~----~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          344 NSNKVAVIDSKDRRLSALVDVGKTPHPGR--GANF----VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSSBCCTT--CEEE----EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCeEEEEECCCCeEEEeeccCCCCCCCC--Cccc----CCCCCccEEEeccCCCceEEEEEeCC
Confidence            57899999999998887763     2221  1111    3564477788875 689999999988

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=5.2e-21  Score=143.94  Aligned_cols=191  Identities=8%  Similarity=0.018  Sum_probs=142.7

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc-ceeeccCCcC
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-ATELAVNSGP   81 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~   81 (224)
                      ...+..+++++.+++|++||..+++.+... .+...+ .++|+|++..+++++..++.|.+||..+++. ...+..+..+
T Consensus         7 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~   85 (331)
T 3u4y_A            7 TTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS   85 (331)
T ss_dssp             CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC
T ss_pred             CCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC
Confidence            345567889999999999999999988776 344556 9999999943555555589999999999887 6667666666


Q ss_pred             eEEEEEcCCCCCeEEEecCCC---cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCC-cEEEECCCCCc
Q psy11351         82 FHAVMFNPVEARLVATANSKD---GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLP-PVLYNTRSSSP  156 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~-v~v~d~~~~~~  156 (224)
                      ..+++|+| ++++++++..++   .|.+||+.+++....+. .......++|+|+|+++++++ .++. +.+|++.....
T Consensus        86 ~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~  163 (331)
T 3u4y_A           86 MADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV  163 (331)
T ss_dssp             CCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred             ccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence            66699999 888888665553   89999999887655544 345568999999998776654 4588 99999876443


Q ss_pred             cee-----cccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCCCCe
Q psy11351        157 VAQ-----FDHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       157 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +..     +.....     ...++|+| +++ +++++..++.|++||+.+++.
T Consensus       164 ~~~~~~~~~~~~~~-----~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          164 LFDTGQEFISGGTR-----PFNITFTP-DGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEEEEEEEECSSSS-----EEEEEECT-TSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             EeecCCccccCCCC-----ccceEECC-CCCEEEEEeCCCCeEEEEECCCCcc
Confidence            321     111122     34578888 576 556667799999999998876

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=1.1e-22  Score=158.70  Aligned_cols=151  Identities=10%  Similarity=0.051  Sum_probs=120.6

Q ss_pred             CCCCcceEEE----EEeCCCcEEEEeCCCC--------ce---eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEe
Q psy11351          2 ASGDPIKVLR----VIGNDDHVISHDMASG--------DP---IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFD   65 (224)
Q Consensus         2 a~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd   65 (224)
                      +.+..+++|+    +|+.|++|+|||+.++        ++   +..+ +|...|.+++|+|++.++|++++.||+|++||
T Consensus        99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD  178 (434)
T 2oit_A           99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ  178 (434)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence            4566788888    7889999999998654        22   2222 69999999999998448999999999999999


Q ss_pred             cCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-------CCceeEEEEcCCCCeEe
Q psy11351         66 TRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-------CESCMSIRFNKAGTQLL  138 (224)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~  138 (224)
                      ++++........|...|.+++|+| ++++|++|+.||.|++||++ ++....+..+       ...+.+++|++++.+++
T Consensus       179 ~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          179 VTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             ESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             cCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            999876666677888999999999 89999999999999999998 4444444332       23899999999888776


Q ss_pred             eee-cCCC------cEEEECCCC
Q psy11351        139 GLR-RRLP------PVLYNTRSS  154 (224)
Q Consensus       139 ~~~-~d~~------v~v~d~~~~  154 (224)
                      +.+ .+|.      +++|++++.
T Consensus       257 ~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          257 VYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEccCCCccCCCCceEEEEeccC
Confidence            533 3432      889999865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=4.2e-21  Score=145.47  Aligned_cols=194  Identities=10%  Similarity=0.056  Sum_probs=149.6

Q ss_pred             CCCCcce-EEEEEeCCCcEEEEeCCCCceeeEEec-c-C--------CeeEEEEcCCCCcEEEEec--CCCEEEEEecCC
Q psy11351          2 ASGDPIK-VLRVIGNDDHVISHDMASGDPIDFYLH-E-R--------PVYGLSVDPSQDAIFASAC--DDGRVLLFDTRS   68 (224)
Q Consensus         2 a~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~--------~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~   68 (224)
                      +.+.+++ ++++...++.|.+||.++++.+..+.. . .        .+.+++|+|++ +.+++++  .++.|.+||..+
T Consensus        95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTT
T ss_pred             EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCC
Confidence            3455666 455566689999999999998777632 2 1        27899999998 5555443  588999999999


Q ss_pred             cccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec----CCCceeEEEEcCCCCeEeeeec-C
Q psy11351         69 REEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG----SCESCMSIRFNKAGTQLLGLRR-R  143 (224)
Q Consensus        69 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-d  143 (224)
                      ++.+..+..+...+..++|+| +++.+++++.++.+.+||+.+++....+..    +...+..++|+|+++++++++. +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred             CceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence            988877765566688999999 888888888899999999999877665553    4556788999999998777665 4


Q ss_pred             CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|.+||+.+++.+..+..... .     .++|+| +++ ++++...++.|.+||..+++..
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~~~-~-----~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAPES-L-----AVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECSSC-C-----CEEEET-TTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCcEEEEEEcCCC-c-----eEEECC-CCCEEEEEECCCCeEEEEECCCCeEE
Confidence            8899999999988777743222 2     267777 565 5666668999999999988764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.7e-21  Score=146.62  Aligned_cols=190  Identities=11%  Similarity=0.108  Sum_probs=144.1

Q ss_pred             CCCCcceE-EEEEeCCCcEEEEeCCCCceeeEEecc------CCeeEEEEcCCCCcEEEEec------------CCCEEE
Q psy11351          2 ASGDPIKV-LRVIGNDDHVISHDMASGDPIDFYLHE------RPVYGLSVDPSQDAIFASAC------------DDGRVL   62 (224)
Q Consensus         2 a~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~------------~d~~i~   62 (224)
                      +.++++++ ++++..++.|.+||+.+++.+..+...      ..+.+++|+|++ +.++++.            .++.|.
T Consensus        40 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~  118 (337)
T 1pby_B           40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEE
Confidence            44566755 456667889999999999887766432      278899999998 6777775            579999


Q ss_pred             EEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC---------------------
Q psy11351         63 LFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS---------------------  121 (224)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---------------------  121 (224)
                      +||+.+++.+..+.. ...+..++|+| ++++++++  ++.|.+||+.+++....+..+                     
T Consensus       119 v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          119 LYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             EEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             EEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccC
Confidence            999998887766654 44578899999 77777776  578999999877544332211                     


Q ss_pred             ---------------------------------------------CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351        122 ---------------------------------------------CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus       122 ---------------------------------------------~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                                                                   ...+.+++|+|++++++++  ++.|++||+.+++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~  272 (337)
T 1pby_B          195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS  272 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE
T ss_pred             CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC
Confidence                                                         1234468999999999888  68899999999888


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +..+.....+.     .++|+| ++++|++++.++.|++||+.+++..
T Consensus       273 ~~~~~~~~~~~-----~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          273 IKRVPLPHSYY-----SVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEECSSCCC-----EEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             cceecCCCcee-----eEEECC-CCCEEEEEcCCCcEEEEECcCCcEE
Confidence            77764433333     367777 6888888888999999999998775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=4.9e-21  Score=153.27  Aligned_cols=193  Identities=9%  Similarity=0.064  Sum_probs=150.0

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEec--CCcccceeeccCCc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDT--RSREEATELAVNSG   80 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~   80 (224)
                      .+..+.++++++.|++|.+||..+++++..+.....+..++|+|++ ++|++++.|++|.+||+  .+++.+..+.. ..
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~  222 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GI  222 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEEC-CS
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEEEEec-CC
Confidence            3456788999999999999999999998888533348999999999 89999999999999999  78888777764 44


Q ss_pred             CeEEEEEcC----CCCCeEEEec-CCCcEEEEecCCCceeeEeecC-----------CCceeEEEEcCCCCe-EeeeecC
Q psy11351         81 PFHAVMFNP----VEARLVATAN-SKDGIALYDTRKPKEVLMQYGS-----------CESCMSIRFNKAGTQ-LLGLRRR  143 (224)
Q Consensus        81 ~i~~~~~~~----~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~~~d  143 (224)
                      ....++|+|    ++ +++++++ .++.|.+||..+.+.+..+..+           ...+..+.++|++.. +++...+
T Consensus       223 ~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          223 EARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             EEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            579999998    54 5566655 5899999999998877665531           237889999998765 4556678


Q ss_pred             CCcEEEECCCCCcce--ecccCCcccceeeeEEEEeCCCCeEEE-EcCCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVA--QFDHEGYYNSCTMKSCCFAGTQDEYVV-SGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.|.+||+.+.+.+.  .+.+......     +.|+| ++++++ ++..+++|.+||..++++.
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~~~~~~~-----~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~  359 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGAAPFLHD-----GGWDS-SHRYFMTAANNSNKVAVIDSKDRRLS  359 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEECCSSCCC-----EEECT-TSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CeEEEEEecCCCcceeEEeccCcCccC-----ceECC-CCCEEEEEecCCCeEEEEECCCCeEE
Confidence            999999998876554  3333333333     56777 677654 5566899999999999764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4e-21  Score=144.54  Aligned_cols=149  Identities=12%  Similarity=0.148  Sum_probs=119.7

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccC---CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC-----C
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHER---PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN-----S   79 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~   79 (224)
                      +++++++.+++|++||+.+++.+..+....   .+..++|+|++..+++++..++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            589999999999999999999888775555   68999999998555677788899999999998877666431     1


Q ss_pred             cCeEEEEEcCCCCCeEEEec------------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcE
Q psy11351         80 GPFHAVMFNPVEARLVATAN------------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  147 (224)
                      ..+..++|+| +++++++++            .++.|.+||+.+++....+.. ...+..++|+|++++|+++  ++.|+
T Consensus        82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~  157 (337)
T 1pby_B           82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH  157 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred             ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence            2567899999 887887775            579999999998766555443 4567889999999988887  67899


Q ss_pred             EEECCCCCcceec
Q psy11351        148 LYNTRSSSPVAQF  160 (224)
Q Consensus       148 v~d~~~~~~~~~~  160 (224)
                      +||+.+++....+
T Consensus       158 ~~d~~~~~~~~~~  170 (337)
T 1pby_B          158 VMDPEAGTLVEDK  170 (337)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCcEeeee
Confidence            9999887665444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=5.7e-21  Score=144.44  Aligned_cols=156  Identities=10%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccC--CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHER--PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +|....+.++++++.+++|++||+.+++.+..+....  .+..++|+|++..++++...++.|.+||+.+++....+...
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            3566778899999999999999999998887774444  68899999998445667778999999999988877666532


Q ss_pred             C------cCeEEEEEcCCCCCeEEEecCC------------CcEEEEecCCCceee--EeecCCCceeEEEEcCCCCeEe
Q psy11351         79 S------GPFHAVMFNPVEARLVATANSK------------DGIALYDTRKPKEVL--MQYGSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        79 ~------~~i~~~~~~~~~~~~l~~~~~d------------g~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~  138 (224)
                      .      ..+..++|+| +++++++++.+            +.|.+||+.+++...  ....+...+.+++|+|+|+ ++
T Consensus        85 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             cccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence            2      2378899999 88888888755            899999998743222  2223445688999999999 55


Q ss_pred             eeecCCCcEEEECCCCCcceec
Q psy11351        139 GLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       139 ~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      +++  +.|++||+.+++....+
T Consensus       163 ~~~--~~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          163 VAG--PDIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             EES--SSEEEECTTTCCEEEEE
T ss_pred             Ecc--CcEEEEeCCCCceeccc
Confidence            553  34999999988776655

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.3e-21  Score=144.24  Aligned_cols=192  Identities=11%  Similarity=0.034  Sum_probs=140.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCC-CceeeEE-ec-cCCeeEEEEcCCCCcEEEEec--CCCEEEEE--ecCCccccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMAS-GDPIDFY-LH-ERPVYGLSVDPSQDAIFASAC--DDGRVLLF--DTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~--~d~~i~iw--d~~~~~~~~~   74 (224)
                      +.+++++++++++ ++.|++||+.+ ++..... .+ ...+.+++|+|++ ++|++++  .++...||  +..+++ ...
T Consensus        48 ~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~  124 (297)
T 2ojh_A           48 NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRL  124 (297)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCC-CEE
T ss_pred             EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCc-eEE
Confidence            4567788899887 78999999999 8777665 34 4788999999999 7888877  33445555  444444 344


Q ss_pred             eccCCcCeEEEEEcCCCCCeEE-EecCCCcEEEEecCC-CceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEEC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVA-TANSKDGIALYDTRK-PKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNT  151 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~  151 (224)
                      +..+ ..+..++|+| +++.++ +++.++.+++|++.. ......+..+...+.+++|+|++++|+.++ .++.+++|++
T Consensus       125 ~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~  202 (297)
T 2ojh_A          125 MTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV  202 (297)
T ss_dssp             CCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence            4433 3489999999 666665 788899999998643 234455666778899999999999888766 5889999988


Q ss_pred             C-CCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCC-----------CeEEEEeCCCCCeE
Q psy11351        152 R-SSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----------FVLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----------~~v~iw~~~~~~~~  204 (224)
                      . .+.....+ .+..     ....+.|+| ++++|++++.+           +.|++||+.+++..
T Consensus       203 ~~~~~~~~~~~~~~~-----~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          203 RVDGSSVERITDSAY-----GDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             ETTSSCEEECCCCSE-----EEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred             CCCCCCcEEEecCCc-----ccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence            6 44455555 3332     244578888 68888777665           57999999988653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=1.6e-21  Score=161.51  Aligned_cols=195  Identities=8%  Similarity=0.059  Sum_probs=146.3

Q ss_pred             CCCCcceEEEEEeC-CC-----cEEEEeCCCCceeeEE-ecc------------------------CCeeEEEEcCCCCc
Q psy11351          2 ASGDPIKVLRVIGN-DD-----HVISHDMASGDPIDFY-LHE------------------------RPVYGLSVDPSQDA   50 (224)
Q Consensus         2 a~~~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~-~~~------------------------~~v~~~~~~~~~~~   50 (224)
                      +.+.+|++|++++. |+     +|++||+.+++..... .+.                        ..+.+++|+|+| +
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg-~  121 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA-Q  121 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS-S
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC-C
Confidence            45778999999998 88     8999999999887766 332                        237899999999 7


Q ss_pred             EEEEecCCCEEEEEecCCcc--cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCc----
Q psy11351         51 IFASACDDGRVLLFDTRSRE--EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES----  124 (224)
Q Consensus        51 ~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----  124 (224)
                      +|++++. +.|.+||+.+++  ....+..+...+..++|+| ++++|+.++ ++.|++||+.+++.......+...    
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g  198 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNG  198 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEES
T ss_pred             EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecc
Confidence            8888775 899999999873  3556667778899999999 889888886 468999999987544333333222    


Q ss_pred             ------------eeEEEEcCCCCeEeeeecCC---------------------------------CcEEEECCC-CCcce
Q psy11351        125 ------------CMSIRFNKAGTQLLGLRRRL---------------------------------PPVLYNTRS-SSPVA  158 (224)
Q Consensus       125 ------------v~~~~~~~~~~~l~~~~~d~---------------------------------~v~v~d~~~-~~~~~  158 (224)
                                  +..++|+|||++|++++.|+                                 .|++||+.+ ++...
T Consensus       199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~  278 (741)
T 2ecf_A          199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW  278 (741)
T ss_dssp             CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE
T ss_pred             ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE
Confidence                        47799999999999987765                                 688899988 76544


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcC-----CCCeEEEEeCCCCCeE
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-----DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-----~d~~v~iw~~~~~~~~  204 (224)
                      ......  ....+..++| | ++++|+.++     .+..|++||+.+++..
T Consensus       279 ~~~~~~--~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~  325 (741)
T 2ecf_A          279 IDLGKE--QDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQR  325 (741)
T ss_dssp             ECCCSC--SSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred             ecCCCC--cceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence            331101  1122344677 6 788877544     3678999999998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=1e-20  Score=142.30  Aligned_cols=193  Identities=7%  Similarity=0.069  Sum_probs=141.5

Q ss_pred             CCCCcceEEEEEeC-CCcEEEEeCCCCce-eeEE-eccCCeeEEEEcCCCCcEEEEecCCC---EEEEEecCCcccceee
Q psy11351          2 ASGDPIKVLRVIGN-DDHVISHDMASGDP-IDFY-LHERPVYGLSVDPSQDAIFASACDDG---RVLLFDTRSREEATEL   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~   75 (224)
                      +++++++++++++. ++.|.+||+.+++. .... .+..+..+++|+|++ ++++++..++   .|.+||+.+++.+..+
T Consensus        46 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~  124 (331)
T 3u4y_A           46 AITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTI  124 (331)
T ss_dssp             EECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence            45677776665555 89999999999887 5555 445555559999999 6777665553   9999999998877776


Q ss_pred             ccCCcCeEEEEEcCCCCC-eEEEecCCCc-EEEEecCCCcee----eEeecCCCceeEEEEcCCCCeEeeee-cCCCcEE
Q psy11351         76 AVNSGPFHAVMFNPVEAR-LVATANSKDG-IALYDTRKPKEV----LMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVL  148 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~-~l~~~~~dg~-v~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v  148 (224)
                      ..+ ....+++|+| +++ ++++...++. +.+|++.....+    .........+..++|+|+|+++++++ .++.|++
T Consensus       125 ~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          125 PIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI  202 (331)
T ss_dssp             ECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            553 4568999999 665 5555566688 999998864333    22223455689999999999766554 5788999


Q ss_pred             EECCCCCc---ceecccCCcccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCCCCCe
Q psy11351        149 YNTRSSSP---VAQFDHEGYYNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       149 ~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~~~~~  203 (224)
                      ||+.+++.   +..+.....+..     ++|+| +++++ ++...++.|.+||+.+++.
T Consensus       203 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          203 LETQNPENITLLNAVGTNNLPGT-----IVVSR-DGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EECSSTTSCEEEEEEECSSCCCC-----EEECT-TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             EECCCCcccceeeeccCCCCCce-----EEECC-CCCEEEEEEcCCCEEEEEECCCCce
Confidence            99999888   666644444333     66777 67755 5555688999999999876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.4e-21  Score=161.34  Aligned_cols=197  Identities=8%  Similarity=0.020  Sum_probs=145.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-ccC---CeeEEEEcCCCCcEEEEecCC---------CEEEEEecCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-HER---PVYGLSVDPSQDAIFASACDD---------GRVLLFDTRS   68 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~---~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~   68 (224)
                      +.+++|+++++ +.||+|++||+.+++....+. |..   .+.+++|+|+| ++|++++.+         +.+.+||+.+
T Consensus        23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~  100 (723)
T 1xfd_A           23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (723)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCC
Confidence            55677887766 789999999999998877774 443   49999999999 788887664         7899999998


Q ss_pred             cccceee---ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCc------------------eeE
Q psy11351         69 REEATEL---AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCES------------------CMS  127 (224)
Q Consensus        69 ~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~------------------v~~  127 (224)
                      ++. ..+   ..|...+..++|+| +++.|+.++. +.|++||+.+++.......+...                  +.+
T Consensus       101 ~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          101 GDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             CCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             Cce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence            875 333   34444588999999 8888888865 79999999987654444433332                  378


Q ss_pred             EEEcCCCCeEeeeecCC----------------------------------CcEEEECCCCCcceecc-cCCc-ccceee
Q psy11351        128 IRFNKAGTQLLGLRRRL----------------------------------PPVLYNTRSSSPVAQFD-HEGY-YNSCTM  171 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d~----------------------------------~v~v~d~~~~~~~~~~~-~~~~-~~~~~~  171 (224)
                      ++|+|||++|++++.++                                  .|++||+.+++....+. +... -....+
T Consensus       178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~  257 (723)
T 1xfd_A          178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (723)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence            99999999999887553                                  68899998877545552 2110 012234


Q ss_pred             eEEEEeCCCCeEEEEcC----CCCeEEEEeCCCCCeE
Q psy11351        172 KSCCFAGTQDEYVVSGS----DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       172 ~~~~~~~~~~~~l~s~~----~d~~v~iw~~~~~~~~  204 (224)
                      ..+.|+| +++++++.+    .+..|++||+.+++..
T Consensus       258 ~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~  293 (723)
T 1xfd_A          258 TMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCT  293 (723)
T ss_dssp             EEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             EEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence            5688998 688886653    3468999999998764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=5.2e-21  Score=141.06  Aligned_cols=176  Identities=10%  Similarity=0.018  Sum_probs=130.2

Q ss_pred             EeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-cccceeeccC-CcCeEEEEEcCC
Q psy11351         13 IGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-REEATELAVN-SGPFHAVMFNPV   90 (224)
Q Consensus        13 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-~~~i~~~~~~~~   90 (224)
                      ++.|++|++||+.+++......|...+.+++|+|++ ++|++++ ++.|++||+.+ ++.......+ ...+.+++|+| 
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-   94 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-   94 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-
Confidence            457899999999999988777999999999999999 7888876 78999999998 7766665555 36788999999 


Q ss_pred             CCCeEEEec--CCCcEEEEec--CCCceeeEeecCCCceeEEEEcCCCCeEe-eeecCCCcEEEEC--CCCCcceecccC
Q psy11351         91 EARLVATAN--SKDGIALYDT--RKPKEVLMQYGSCESCMSIRFNKAGTQLL-GLRRRLPPVLYNT--RSSSPVAQFDHE  163 (224)
Q Consensus        91 ~~~~l~~~~--~dg~v~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~v~d~--~~~~~~~~~~~~  163 (224)
                      +++++++++  .++...||.+  ..++ ...+. ....+..++|+|++++|+ ++..++.+++|++  .+++......+.
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            888888887  3345555554  4443 33333 334588999999999887 6778888899985  334332222444


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEc-CCCCeEEEEeCC
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSG-SDDFVLYMWRVP  199 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~iw~~~  199 (224)
                      ..+     ..++|+| ++++|+.+ ..++.+++|++.
T Consensus       173 ~~~-----~~~~~s~-dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          173 GRN-----DGPDYSP-DGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             SCE-----EEEEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred             Ccc-----ccceECC-CCCEEEEEecCCCCccEEEEC
Confidence            433     3477888 57766554 468889999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=8.3e-20  Score=137.62  Aligned_cols=194  Identities=10%  Similarity=0.047  Sum_probs=133.6

Q ss_pred             CCCCcceEEEEEeCC-CcEEEEeCC--CCcee--eEEeccCCeeEEEEcCCCCcEE-EEecCCCEEEEEecC---Ccccc
Q psy11351          2 ASGDPIKVLRVIGND-DHVISHDMA--SGDPI--DFYLHERPVYGLSVDPSQDAIF-ASACDDGRVLLFDTR---SREEA   72 (224)
Q Consensus         2 a~~~~~~~l~~~~~d-g~i~iwd~~--~~~~~--~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~---~~~~~   72 (224)
                      +.+.+++++++++.+ +.|++|++.  +++..  ..+.....+..++|+|++ +++ +++..++.|.+||+.   ..+..
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcccccc
Confidence            456778888888876 999999998  55543  333444588999999999 555 555568999999994   44444


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecCC-Cceee----Eee-cCCCceeEEEEcCCCCeEeeee-cCC
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTRK-PKEVL----MQY-GSCESCMSIRFNKAGTQLLGLR-RRL  144 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~-~~~~~----~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~  144 (224)
                      ..+..+ ..+.+++|+| +++++++++ .++.|.+||+.+ ++...    ... .....+..++|+|+++++++++ .++
T Consensus       123 ~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          123 DVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            444443 4588999999 777666665 889999999987 43321    222 2445788999999999776655 788


Q ss_pred             CcEEEECCC--CCcc--eecc-cCCc-ccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCC
Q psy11351        145 PPVLYNTRS--SSPV--AQFD-HEGY-YNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVP  199 (224)
Q Consensus       145 ~v~v~d~~~--~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~  199 (224)
                      .+.+|++..  ++..  ..+. .... ........++|+| ++++| +++..++.|.+||+.
T Consensus       201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEc
Confidence            999999954  3321  1111 1111 0111233578888 56555 466789999999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=2.1e-20  Score=140.94  Aligned_cols=194  Identities=10%  Similarity=0.137  Sum_probs=129.9

Q ss_pred             CCCCcceEEEEEe-CCCcEEEEeCC---CCceeeEEeccCCeeEEEEcCCCCcEEEEec-CCCEEEEEecCC-cccce--
Q psy11351          2 ASGDPIKVLRVIG-NDDHVISHDMA---SGDPIDFYLHERPVYGLSVDPSQDAIFASAC-DDGRVLLFDTRS-REEAT--   73 (224)
Q Consensus         2 a~~~~~~~l~~~~-~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~--   73 (224)
                      +.+++++++++++ .++.|.+||+.   ..+..........+.+++|+|++ +.+++++ .++.|.+||+.+ ++...  
T Consensus        90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~  168 (343)
T 1ri6_A           90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQD  168 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeec
Confidence            4566777776665 48899999994   33444445555679999999998 5555555 899999999987 54321  


Q ss_pred             --eecc-CCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCC--Cce--eeEeec------CCCceeEEEEcCCCCeEee
Q psy11351         74 --ELAV-NSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRK--PKE--VLMQYG------SCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        74 --~~~~-~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~--~~~--~~~~~~------~~~~v~~~~~~~~~~~l~~  139 (224)
                        .+.. ....+..++|+| +++++ +++..++.+.+||+..  ++.  ......      ....+..++|+|++++|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          169 PAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             EEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             ccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence              2222 234788999999 67655 5555889999999964  321  112211      1235668999999998875


Q ss_pred             ee-cCCCcEEEECCC--C--CcceecccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeC--CCCCe
Q psy11351        140 LR-RRLPPVLYNTRS--S--SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRV--PRDDI  203 (224)
Q Consensus       140 ~~-~d~~v~v~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~--~~~~~  203 (224)
                      +. .++.|.+||+..  +  +.+..+.....+..     ++|+| ++++|++++ .++.+.+|++  .+++.
T Consensus       248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG-----FNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC-----EEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EecCCCEEEEEEEcCCCCceEEeeeecCCCccce-----EEECC-CCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            54 788999999983  2  23333322222333     67777 677666665 6899999954  45544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=4.2e-20  Score=139.65  Aligned_cols=189  Identities=11%  Similarity=0.072  Sum_probs=137.5

Q ss_pred             CCCCcceE-EEEEeCCCcEEEEeCCCCceeeEEec-------cCCeeEEEEcCCCCcEEEEecCC------------CEE
Q psy11351          2 ASGDPIKV-LRVIGNDDHVISHDMASGDPIDFYLH-------ERPVYGLSVDPSQDAIFASACDD------------GRV   61 (224)
Q Consensus         2 a~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d------------~~i   61 (224)
                      ++++++++ ++++..++.|.+||+.+++.+..+..       ...+.+++|+|++ +++++++.+            +.|
T Consensus        49 ~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i  127 (349)
T 1jmx_B           49 MMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRL  127 (349)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEE
T ss_pred             EECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeE
Confidence            34566664 45666789999999999988766632       2347899999999 788777755            899


Q ss_pred             EEEecCCcccce---eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCC----------------
Q psy11351         62 LLFDTRSREEAT---ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSC----------------  122 (224)
Q Consensus        62 ~iwd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~----------------  122 (224)
                      .+||+.+++...   .+. +...+.+++|+| +++ +++++.  .|.+||+.+++....+....                
T Consensus       128 ~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (349)
T 1jmx_B          128 EVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP  202 (349)
T ss_dssp             EEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred             EEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence            999998865432   332 334688999999 777 444433  49999998876554433211                


Q ss_pred             ----------------------------------------------------CceeEEEEcC-CCCeEeeeecCCCcEEE
Q psy11351        123 ----------------------------------------------------ESCMSIRFNK-AGTQLLGLRRRLPPVLY  149 (224)
Q Consensus       123 ----------------------------------------------------~~v~~~~~~~-~~~~l~~~~~d~~v~v~  149 (224)
                                                                          ..+..++|+| ++++++++  ++.|++|
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~  280 (349)
T 1jmx_B          203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY  280 (349)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred             CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence                                                                1345677889 99999888  7889999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      |+.+++.+..+.....+.     .++|+| ++++|++++.++.|++||+.+++..
T Consensus       281 d~~~~~~~~~~~~~~~~~-----~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          281 DLKQRKLIKAANLDHTYY-----CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             ETTTTEEEEEEECSSCCC-----EEEECS-SSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ECccCeEEEEEcCCCCcc-----ceEECC-CCCEEEEecCCCeEEEEecccccee
Confidence            999988877764333333     367777 6777777788899999999998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=9.7e-20  Score=150.14  Aligned_cols=193  Identities=9%  Similarity=0.112  Sum_probs=141.3

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-----cccceeecc
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-----REEATELAV   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~   77 (224)
                      .+++ +.++.+ .+++|++||+.+++......+...+.+++|+|+| +.|+++ .|+.|++||+.+     ++.......
T Consensus        89 ~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~  164 (706)
T 2z3z_A           89 DAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID  164 (706)
T ss_dssp             ETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred             ECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccC
Confidence            3444 444444 3699999999998887777788889999999999 788775 579999999998     765544433


Q ss_pred             CCcC--------------eEEEEEcCCCCCeEEEec---------------------------------CCCcEEEEecC
Q psy11351         78 NSGP--------------FHAVMFNPVEARLVATAN---------------------------------SKDGIALYDTR  110 (224)
Q Consensus        78 ~~~~--------------i~~~~~~~~~~~~l~~~~---------------------------------~dg~v~i~d~~  110 (224)
                      +...              +.++.|+| ++++|++++                                 .+..|.+||+.
T Consensus       165 ~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          165 GTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             CBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             CCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            3332              48899999 888888886                                 44679999999


Q ss_pred             CCceeeEee--cCCCceeEEEEcCCCCeEeeeecCC-----CcEEEECCCCCcceec-c--cCCcccceeeeEEEEeC-C
Q psy11351        111 KPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRL-----PPVLYNTRSSSPVAQF-D--HEGYYNSCTMKSCCFAG-T  179 (224)
Q Consensus       111 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~v~d~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-~  179 (224)
                      +++......  .+...+..++|+|||++|++++.++     .|++||+.+++....+ .  ....+.  ....+.|+| .
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~--~~~~~~~sp~~  321 (706)
T 2z3z_A          244 TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE--PLHPLTFLPGS  321 (706)
T ss_dssp             TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC--CCSCCEECTTC
T ss_pred             CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC--ccCCceeecCC
Confidence            876433332  3667899999999999999887665     7999999988443333 2  111111  113467888 2


Q ss_pred             CCeEEEEcCCCCeEEEEeCC-CCC
Q psy11351        180 QDEYVVSGSDDFVLYMWRVP-RDD  202 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~-~~~  202 (224)
                      +++++++++.|+.+++|++. +++
T Consensus       322 dg~~l~~~~~~g~~~l~~~~~~~~  345 (706)
T 2z3z_A          322 NNQFIWQSRRDGWNHLYLYDTTGR  345 (706)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSC
T ss_pred             CCEEEEEEccCCccEEEEEECCCC
Confidence            47899999999989999876 443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=4.2e-20  Score=153.01  Aligned_cols=190  Identities=11%  Similarity=0.053  Sum_probs=142.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCC---ceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASG---DPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +.+.+|++|++++. ++|++||+.++   +......|...+.+++|+|+| ++|+.++ ++.|++||+.+++.......+
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            45778899999886 99999999988   665555788899999999999 7888877 469999999987755444333


Q ss_pred             CcC----------------eEEEEEcCCCCCeEEEecCCC---------------------------------cEEEEec
Q psy11351         79 SGP----------------FHAVMFNPVEARLVATANSKD---------------------------------GIALYDT  109 (224)
Q Consensus        79 ~~~----------------i~~~~~~~~~~~~l~~~~~dg---------------------------------~v~i~d~  109 (224)
                      ...                +..++|+| +++.|++++.|+                                 .|.+||+
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             ccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            332                47899999 888888887655                                 7889999


Q ss_pred             CC-CceeeEee--cCCCceeEEEEcCCCCeEeeeec-----CCCcEEEECCCCCcceecc-cC-CcccceeeeEEEEeCC
Q psy11351        110 RK-PKEVLMQY--GSCESCMSIRFNKAGTQLLGLRR-----RLPPVLYNTRSSSPVAQFD-HE-GYYNSCTMKSCCFAGT  179 (224)
Q Consensus       110 ~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  179 (224)
                      .+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++....+. +. ..+.  ....+.|+| 
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~~~~~~sp-  346 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP--LHNSLRFLD-  346 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--CCSCCEECT-
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--cCCceEECC-
Confidence            87 65433322  36678999999 99999987654     4569999999988766653 22 1111  112367788 


Q ss_pred             CCeEEEEcCCCCeEEEEeCC
Q psy11351        180 QDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +++++++++.|+.+++|.+.
T Consensus       347 dg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEEC
T ss_pred             CCeEEEEecCCCccEEEEEc
Confidence            68899999999977777665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.5e-18  Score=131.49  Aligned_cols=195  Identities=10%  Similarity=0.070  Sum_probs=130.4

Q ss_pred             CCCCcceEEEEEeC---CCcEEEEeCCCCcee--eE-EeccCCeeEEEEcCCCCcEEEEec-CCCEEEEEecCCc-c--c
Q psy11351          2 ASGDPIKVLRVIGN---DDHVISHDMASGDPI--DF-YLHERPVYGLSVDPSQDAIFASAC-DDGRVLLFDTRSR-E--E   71 (224)
Q Consensus         2 a~~~~~~~l~~~~~---dg~i~iwd~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~--~   71 (224)
                      +++++++ +++++.   ++.|++|++.+++..  .. ..+...+..++|+|++ ++|++++ .++.+.+|++... .  .
T Consensus        46 a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           46 ALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             EECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             EEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeee
Confidence            4566777 554444   689999999877643  33 2577889999999999 6666665 7899999999632 2  2


Q ss_pred             ceeecc---------CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC-CCceee--Eee-cCCCceeEEEEcCCCCeEe
Q psy11351         72 ATELAV---------NSGPFHAVMFNPVEARLVATANSKDGIALYDTR-KPKEVL--MQY-GSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        72 ~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~  138 (224)
                      +..+..         +...+.+++|+| +++++++...++.|.+||+. +++...  .+. .....+..++|+|+|++++
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             cceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence            222221         122488999999 66777777788999999998 343221  112 2334678899999999776


Q ss_pred             ee-ecCCCcEEEECCC--CCcc--eec-ccCCc-ccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCCC
Q psy11351        139 GL-RRRLPPVLYNTRS--SSPV--AQF-DHEGY-YNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVPR  200 (224)
Q Consensus       139 ~~-~~d~~v~v~d~~~--~~~~--~~~-~~~~~-~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~~  200 (224)
                      ++ ..++.+.+|++..  ++..  ..+ ..... ........++|+| ++++| ++...++.|.+|++..
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECC
Confidence            64 5678899999874  4321  122 11111 0112244578888 67765 6666789999999973

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=3.5e-18  Score=129.39  Aligned_cols=195  Identities=10%  Similarity=0.132  Sum_probs=129.8

Q ss_pred             CCCCcceEEEEEe-CCCcEEEEeCC-CCcee--eEEecc----------CCeeEEEEcCCCCcEEEEecCCCEEEEEecC
Q psy11351          2 ASGDPIKVLRVIG-NDDHVISHDMA-SGDPI--DFYLHE----------RPVYGLSVDPSQDAIFASACDDGRVLLFDTR   67 (224)
Q Consensus         2 a~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~--~~~~~~----------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~   67 (224)
                      ++++++++|++++ .+++|++|++. +++..  ....+.          ..+.+++|+|++ +++++...++.|.+||+.
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEEC
Confidence            4567788888777 78999999996 33322  222221          248899999999 588888889999999998


Q ss_pred             -Ccccc--eeeccC-CcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCC--Cce--eeEeecCC------CceeEEEEcC
Q psy11351         68 -SREEA--TELAVN-SGPFHAVMFNPVEAR-LVATANSKDGIALYDTRK--PKE--VLMQYGSC------ESCMSIRFNK  132 (224)
Q Consensus        68 -~~~~~--~~~~~~-~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~--~~~--~~~~~~~~------~~v~~~~~~~  132 (224)
                       +++..  ..+..+ ......++|+| +++ +++++..++.+.+|++..  ++.  ........      ..+..++|+|
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence             44322  122222 23678899999 777 455567788999999874  322  11222211      4588899999


Q ss_pred             CCCeEee-eecCCCcEEEECCCC---Ccceecc-cCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEE--eCCCCCeE
Q psy11351        133 AGTQLLG-LRRRLPPVLYNTRSS---SPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMW--RVPRDDIY  204 (224)
Q Consensus       133 ~~~~l~~-~~~d~~v~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw--~~~~~~~~  204 (224)
                      +|++|++ ...++.|.+|++...   +.+..+. +...+.     .++|+| ++++|++++ .++.+.+|  |..+++..
T Consensus       250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-----~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPR-----DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCC-----EEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcC-----eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            9998855 455788999999732   2222332 222233     367777 687766665 45899999  55566654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=2.1e-19  Score=154.00  Aligned_cols=188  Identities=10%  Similarity=0.042  Sum_probs=151.6

Q ss_pred             CC-CcceEEEEEeCCCcEEEEeCCCCceeeEEeccC-CeeEEEEcCCCCcEEEEecCCCEEE-EEecCCcccceeeccCC
Q psy11351          3 SG-DPIKVLRVIGNDDHVISHDMASGDPIDFYLHER-PVYGLSVDPSQDAIFASACDDGRVL-LFDTRSREEATELAVNS   79 (224)
Q Consensus         3 ~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~   79 (224)
                      .+ ++|+++++++ ++.|.+|+..+++......|.. .+..++|+ ++ +.++.++.+..+. +||+..++.. .+..|.
T Consensus       303 ~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~  378 (1045)
T 1k32_A          303 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAE-KFEENL  378 (1045)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEE-ECCCCC
T ss_pred             ecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCce-EecCCc
Confidence            45 6788888887 8899999999887666557777 89999999 88 7888888888898 9999877643 344777


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC----------CcEEE
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL----------PPVLY  149 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~v~v~  149 (224)
                      ..+..++|+| ++++|++++.++.|++||+.+++.......|...+..++|+|||++|++++.++          .|++|
T Consensus       379 ~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          379 GNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             CSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             cceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence            8899999999 899999999999999999998876666657888999999999999998887654          79999


Q ss_pred             ECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        150 NTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       150 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      |+.+++ ...+ .+...+.     .+.|+| ++++|+.++.++...+|+.....
T Consensus       458 d~~~g~-~~~l~~~~~~~~-----~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          458 DMEGRK-IFAATTENSHDY-----APAFDA-DSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             ETTTTE-EEECSCSSSBEE-----EEEECT-TSCEEEEEESCCCCCEECSSSSC
T ss_pred             ECCCCc-EEEeeCCCcccC-----CceEcC-CCCEEEEEecccCCcCcchhccc
Confidence            999877 3333 4433332     367888 78999888888888888766443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=2.1e-19  Score=148.43  Aligned_cols=196  Identities=9%  Similarity=0.060  Sum_probs=139.2

Q ss_pred             CCCCcceEEEEEeCC---------CcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          2 ASGDPIKVLRVIGND---------DHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      +++++|++|++++.+         +.+++||+.+++.....   +|...+..++|+|+| +.|+.++. +.|++||+.++
T Consensus        67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g  144 (723)
T 1xfd_A           67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGK  144 (723)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSS
T ss_pred             EECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCC
Confidence            456789999999875         78889999998863333   345568999999999 78888775 79999999988


Q ss_pred             ccceeeccCCcCe------------------EEEEEcCCCCCeEEEecCCC-----------------------------
Q psy11351         70 EEATELAVNSGPF------------------HAVMFNPVEARLVATANSKD-----------------------------  102 (224)
Q Consensus        70 ~~~~~~~~~~~~i------------------~~~~~~~~~~~~l~~~~~dg-----------------------------  102 (224)
                      +.......+...+                  .+++|+| +++.|++++.++                             
T Consensus       145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  223 (723)
T 1xfd_A          145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS  223 (723)
T ss_dssp             CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred             ceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence            7665554433333                  7899999 888888876543                             


Q ss_pred             -----cEEEEecCCCceeeEeecC------CCceeEEEEcCCCCeEeeeecC----CCcEEEECCCCCcceecc--cCCc
Q psy11351        103 -----GIALYDTRKPKEVLMQYGS------CESCMSIRFNKAGTQLLGLRRR----LPPVLYNTRSSSPVAQFD--HEGY  165 (224)
Q Consensus       103 -----~v~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d----~~v~v~d~~~~~~~~~~~--~~~~  165 (224)
                           .|++||+.+++....+..+      ...+..++|+|||+++++...+    ..|++||+.+++....+.  +.+.
T Consensus       224 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~  303 (723)
T 1xfd_A          224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW  303 (723)
T ss_dssp             CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence                 7999999887654454433      5678999999999988776433    569999999887665542  2333


Q ss_pred             ccceeeeEEEEeCCCCeEEEE--cCCCC------eEEEEe-CCCCC
Q psy11351        166 YNSCTMKSCCFAGTQDEYVVS--GSDDF------VLYMWR-VPRDD  202 (224)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~s--~~~d~------~v~iw~-~~~~~  202 (224)
                      +... .....|+| +++.|+.  +..++      .|++|| ..+++
T Consensus       304 ~~~~-~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          304 LHRQ-NEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             CCCC-CCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             Eecc-CCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            3210 01367888 5775553  45666      677788 44444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=3e-18  Score=130.88  Aligned_cols=198  Identities=11%  Similarity=0.059  Sum_probs=134.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCC-CCceeeEEecc--CCeeEEEEcCCCCc--EEEEec-------------CCCEEEE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMA-SGDPIDFYLHE--RPVYGLSVDPSQDA--IFASAC-------------DDGRVLL   63 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~--~~v~~~~~~~~~~~--~l~s~~-------------~d~~i~i   63 (224)
                      +.++++++|++++.+ .|.+|++. +++......+.  +.+.+++|+|++ +  +++++.             .++++.+
T Consensus        46 a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           46 TFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEE
Confidence            557788889998888 99999997 77765544332  346679999999 6  355654             6899999


Q ss_pred             EecC-Ccccceeec----cCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecC-CCcee--eEee--cCCCceeEEEEcC
Q psy11351         64 FDTR-SREEATELA----VNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTR-KPKEV--LMQY--GSCESCMSIRFNK  132 (224)
Q Consensus        64 wd~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~-~~~~~--~~~~--~~~~~v~~~~~~~  132 (224)
                      |++. +++....+.    .+...+.+++|+| ++++++++. .++.|.+||+. +++..  ..+.  .+...+..++|+|
T Consensus       124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp  202 (365)
T 1jof_A          124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             EccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence            9997 455433333    2456789999999 777777654 46789999998 56432  1222  2356789999999


Q ss_pred             CCCeEeeeec-CCCcEEEECC--CCCcce---ec-ccCCcccc-e-------eeeEEE-EeCCCCeEEEEcCCC-C----
Q psy11351        133 AGTQLLGLRR-RLPPVLYNTR--SSSPVA---QF-DHEGYYNS-C-------TMKSCC-FAGTQDEYVVSGSDD-F----  191 (224)
Q Consensus       133 ~~~~l~~~~~-d~~v~v~d~~--~~~~~~---~~-~~~~~~~~-~-------~~~~~~-~~~~~~~~l~s~~~d-~----  191 (224)
                      +|+++++++. ++.+.+|++.  +++...   .+ ........ .       ....++ |+| ++++|+++..+ .    
T Consensus       203 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~  281 (365)
T 1jof_A          203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQ  281 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSC
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCC
Confidence            9999988775 6789999865  454321   12 11111000 0       234577 888 68877665432 2    


Q ss_pred             -eEEEEeCC-CCCe
Q psy11351        192 -VLYMWRVP-RDDI  203 (224)
Q Consensus       192 -~v~iw~~~-~~~~  203 (224)
                       .|.+|++. +++.
T Consensus       282 ~~i~v~~~~~~g~~  295 (365)
T 1jof_A          282 GYIAGFKLRDCGSI  295 (365)
T ss_dssp             CEEEEEEECTTSCE
T ss_pred             CeEEEEEECCCCCE
Confidence             89999996 5554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=3.1e-19  Score=144.14  Aligned_cols=190  Identities=14%  Similarity=0.040  Sum_probs=133.5

Q ss_pred             CCCcceEEEEEeC-CCcEEEEeCCCCceeeEEecc-CCeeEEEEcCCCCcEEEEecC---CCEEEEEecCC--cccceee
Q psy11351          3 SGDPIKVLRVIGN-DDHVISHDMASGDPIDFYLHE-RPVYGLSVDPSQDAIFASACD---DGRVLLFDTRS--REEATEL   75 (224)
Q Consensus         3 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~   75 (224)
                      .+.+|++||.++. ||+++||++.+++......|. ..+..++|+|+  +++++++.   +....+|.+..  ......+
T Consensus        29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l  106 (582)
T 3o4h_A           29 GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRL  106 (582)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEEC
T ss_pred             cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccc
Confidence            4567889998887 999999999877776666555 68999999998  57776664   55566665543  2222233


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC----CCcEEEEC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR----LPPVLYNT  151 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~v~d~  151 (224)
                      .... .....+|+|++..++++...++.+.+||+.+++... +..+..  .+++|+|||++|++++.+    ..|++||+
T Consensus       107 ~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~  182 (582)
T 3o4h_A          107 EAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  182 (582)
T ss_dssp             TTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             cCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence            3222 344667888333444444455566699998875433 333323  789999999999988766    67999999


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC--eEEEEeCCCCCeE
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF--VLYMWRVPRDDIY  204 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~iw~~~~~~~~  204 (224)
                      .+++......+.+.+     ...+|+| |++.|+++..++  .|++||+.+++..
T Consensus       183 ~~g~~~~l~~~~~~~-----~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          183 SSGGLRVFDSGEGSF-----SSASISP-GMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             TTCCCEEECCSSCEE-----EEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCCCceEeecCCCcc-----ccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            988765443454443     4478888 799999888888  9999999988764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=1.3e-18  Score=143.38  Aligned_cols=194  Identities=10%  Similarity=0.051  Sum_probs=138.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCC-----CceeeEE-eccCC--------------eeEEEEcCCCCcEEEEec-----
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMAS-----GDPIDFY-LHERP--------------VYGLSVDPSQDAIFASAC-----   56 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~-~~~~~--------------v~~~~~~~~~~~~l~s~~-----   56 (224)
                      +.+++|++|+.+ .|+.|++||+.+     ++..... .+...              +.++.|+|+| ++|++++     
T Consensus       127 ~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~  204 (706)
T 2z3z_A          127 DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSM  204 (706)
T ss_dssp             EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTT
T ss_pred             cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCC
Confidence            456788888885 689999999998     7766544 23232              5899999999 7888776     


Q ss_pred             ----------------------------CCCEEEEEecCCcccceee--ccCCcCeEEEEEcCCCCCeEEEecCCC----
Q psy11351         57 ----------------------------DDGRVLLFDTRSREEATEL--AVNSGPFHAVMFNPVEARLVATANSKD----  102 (224)
Q Consensus        57 ----------------------------~d~~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg----  102 (224)
                                                  .+..|++||+.+++.....  ..|...+.+++|+| +++.+++++.++    
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  283 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNE  283 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCe
Confidence                                        4578999999988754433  24567799999999 888888876665    


Q ss_pred             -cEEEEecCCCceeeEee--cCCC---ceeEEEEcC--CCCeEeeeecCCCcEEEECC-CCCcceec-ccCCcccceeee
Q psy11351        103 -GIALYDTRKPKEVLMQY--GSCE---SCMSIRFNK--AGTQLLGLRRRLPPVLYNTR-SSSPVAQF-DHEGYYNSCTMK  172 (224)
Q Consensus       103 -~v~i~d~~~~~~~~~~~--~~~~---~v~~~~~~~--~~~~l~~~~~d~~v~v~d~~-~~~~~~~~-~~~~~~~~~~~~  172 (224)
                       .|.+||+.+++....+.  .+..   .+..++|+|  +|+++++++.++.+++|+++ +++.+..+ .+...+.    .
T Consensus       284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~----~  359 (706)
T 2z3z_A          284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT----N  359 (706)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE----E
T ss_pred             eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE----e
Confidence             89999999884333332  2222   346789999  99999999999999999876 55555555 2322221    1


Q ss_pred             EEEEeCCCCeE-EEEcCCCC----eEEEEeCCCCCe
Q psy11351        173 SCCFAGTQDEY-VVSGSDDF----VLYMWRVPRDDI  203 (224)
Q Consensus       173 ~~~~~~~~~~~-l~s~~~d~----~v~iw~~~~~~~  203 (224)
                      .+.|+| +++. +++++.++    .|+.||+.+++.
T Consensus       360 ~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~  394 (706)
T 2z3z_A          360 FAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKT  394 (706)
T ss_dssp             EEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred             eeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence            257888 5655 45555555    788888877653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=5.1e-17  Score=123.71  Aligned_cols=196  Identities=9%  Similarity=0.076  Sum_probs=129.1

Q ss_pred             CCCCcceEEEEEeCC----CcEEEEeCCC--CceeeE--E-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc
Q psy11351          2 ASGDPIKVLRVIGND----DHVISHDMAS--GDPIDF--Y-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA   72 (224)
Q Consensus         2 a~~~~~~~l~~~~~d----g~i~iwd~~~--~~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~   72 (224)
                      ++++++++|++++.+    +.|.+|++..  ++....  . .+......+++  ++..++++...++.|.+|++.....+
T Consensus        56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~  133 (361)
T 3scy_A           56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL  133 (361)
T ss_dssp             EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB
T ss_pred             EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC
Confidence            567788989988876    7999998865  443322  2 24566778888  66334445557899999999754433


Q ss_pred             eeec--------------cCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCce------e-------eEeecCCCc
Q psy11351         73 TELA--------------VNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKE------V-------LMQYGSCES  124 (224)
Q Consensus        73 ~~~~--------------~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~------~-------~~~~~~~~~  124 (224)
                      ..+.              .+...+.+++|+| +++++ ++...++.+.+|++.....      +       .........
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  212 (361)
T 3scy_A          134 LPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG  212 (361)
T ss_dssp             CSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC
T ss_pred             cccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC
Confidence            2211              1122458899999 77754 5555688999999875432      1       122234566


Q ss_pred             eeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcc--eec-ccCCcccceeeeEEEEeCCCCeEEEEcC-C-CCeEEEEeC
Q psy11351        125 CMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPV--AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGS-D-DFVLYMWRV  198 (224)
Q Consensus       125 v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~-d~~v~iw~~  198 (224)
                      +..++|+|+|+++++++ .++.|.+|++.+++..  ..+ .......  ....++|+| ++++|+++. . ++.|.+|++
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~--~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ--GSGDIHLSP-DGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC--CEEEEEECT-TSSEEEEEECSSSCEEEEEEE
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC--CcccEEECC-CCCEEEEECCCCCCEEEEEEE
Confidence            78999999999888777 5889999999876432  222 1111111  123578888 688775544 4 589999999


Q ss_pred             C--CCCe
Q psy11351        199 P--RDDI  203 (224)
Q Consensus       199 ~--~~~~  203 (224)
                      .  +++.
T Consensus       290 ~~~~g~~  296 (361)
T 3scy_A          290 DETNGTL  296 (361)
T ss_dssp             CTTTCCE
T ss_pred             cCCCCcE
Confidence            6  4443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=149.94  Aligned_cols=192  Identities=11%  Similarity=0.133  Sum_probs=133.0

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEecc-C---CeeEEEEcCCCCcEEEEecC---------CCEEEEEecCCcc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLHE-R---PVYGLSVDPSQDAIFASACD---------DGRVLLFDTRSRE   70 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~   70 (224)
                      ...++++++ +.|++|++||+.+++......+. .   .+.+++|+|+| ++|++++.         ++.|++||+.+++
T Consensus        24 s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~  101 (719)
T 1z68_A           24 ISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGE  101 (719)
T ss_dssp             SSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCc
Confidence            455665554 46999999999999988777433 2   48999999999 78887765         7899999999887


Q ss_pred             cc--eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCce-----------------eEEEE
Q psy11351         71 EA--TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESC-----------------MSIRF  130 (224)
Q Consensus        71 ~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v-----------------~~~~~  130 (224)
                      .+  ..+   ...+..++|+| +++.|+.+. ++.|++||+.+++...... ++...+                 .+++|
T Consensus       102 ~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A          102 FVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             ECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             cccceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            63  222   24688999999 888888874 7899999998775433221 222212                 48999


Q ss_pred             cCCCCeEeeeecCC----------------------------------CcEEEECCCCCcc--eecccCC--cccceeee
Q psy11351        131 NKAGTQLLGLRRRL----------------------------------PPVLYNTRSSSPV--AQFDHEG--YYNSCTMK  172 (224)
Q Consensus       131 ~~~~~~l~~~~~d~----------------------------------~v~v~d~~~~~~~--~~~~~~~--~~~~~~~~  172 (224)
                      +|||++|+.++.|.                                  .|++||+.+++..  ..+....  .-..-.+.
T Consensus       177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence            99999999987652                                  5789999877643  1111000  00111234


Q ss_pred             EEEEeCCCCeEEEEcCC--C--CeEEEEe----CCCCCe
Q psy11351        173 SCCFAGTQDEYVVSGSD--D--FVLYMWR----VPRDDI  203 (224)
Q Consensus       173 ~~~~~~~~~~~l~s~~~--d--~~v~iw~----~~~~~~  203 (224)
                      .++|+| +++++++...  +  ..|.+||    ..+++.
T Consensus       257 ~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          257 WLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             EEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             EeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence            578898 5887776332  2  3588899    766654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=6.3e-18  Score=144.93  Aligned_cols=147  Identities=13%  Similarity=0.108  Sum_probs=125.2

Q ss_pred             CCCCcceEEEEEeCCCcEE-EEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVI-SHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.. +++.++.++.++.+. +||+.+++.....+|...+..++|+|++ ++|++++.++.|++||+.+++....+..|..
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~  421 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREA  421 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence            345 678899988888898 9999988766555788899999999999 8999999999999999999987777778888


Q ss_pred             CeEEEEEcCCCCCeEEEecCC----------CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         81 PFHAVMFNPVEARLVATANSK----------DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~d----------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      .+.+++|+| ++++|++++.+          +.|++||+.+++ ...+..+...+..++|+|+|++|+.++.++...+|+
T Consensus       422 ~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          422 MITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             CCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            999999999 88888877654          389999999875 666777888899999999999999998888777776


Q ss_pred             CC
Q psy11351        151 TR  152 (224)
Q Consensus       151 ~~  152 (224)
                      ..
T Consensus       500 ~~  501 (1045)
T 1k32_A          500 RV  501 (1045)
T ss_dssp             SS
T ss_pred             hh
Confidence            53

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.81  E-value=8.4e-18  Score=123.56  Aligned_cols=188  Identities=12%  Similarity=0.061  Sum_probs=148.1

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEe-cc-CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC-c
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYL-HE-RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-G   80 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~   80 (224)
                      +.|+++|++++.|+.|.+||.++++.+..+. +. ..+.++.++|+| +++++  .++.|..||. +++.+..+..+. .
T Consensus         2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILFS--YSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             -CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEEE--CBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEEe--CCCCEEEECC-CCCEEEEEcCCCCc
Confidence            4678999999999999999999999988884 33 478999999999 78873  4788999998 788888887643 4


Q ss_pred             CeEEEEEcCCCCCeEEEecC-CCcEEEEecCCCceeeEeec------CCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         81 PFHAVMFNPVEARLVATANS-KDGIALYDTRKPKEVLMQYG------SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .+.++.+.+ +++++++.+. ++.+..+|. +++.+..+..      +......+++.++|+++++...++.|..||.. 
T Consensus        78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           78 EMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            688999999 8888888776 778888885 5655555431      11234566789999999999999999999998 


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      |+.+.++........     ....+ ++++++++..+++|..+|..+|+..
T Consensus       155 G~~~w~~~~~~~~~~-----~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          155 GQLLNSVKLSGTPFS-----SAFLD-NGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             SCEEEEEECSSCCCE-----EEECT-TSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             CCEEEEEECCCCccc-----eeEcC-CCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            999888854444333     33444 7899999888889999999988773

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=4.5e-17  Score=124.01  Aligned_cols=192  Identities=8%  Similarity=0.070  Sum_probs=125.5

Q ss_pred             cceEEEEEe-CCCcEEEEeCCCCceee----EEec-----------cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          6 PIKVLRVIG-NDDHVISHDMASGDPID----FYLH-----------ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         6 ~~~~l~~~~-~dg~i~iwd~~~~~~~~----~~~~-----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      +++++++++ .+++|.+|++.....+.    ...+           ...+.+++|+|++..++++...++.|.+|++...
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            355555555 68899999997543221    1112           2345889999999435566666899999998754


Q ss_pred             cc------c-------eeeccCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCce--eeEee---cCCCceeEEEE
Q psy11351         70 EE------A-------TELAVNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKE--VLMQY---GSCESCMSIRF  130 (224)
Q Consensus        70 ~~------~-------~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~--~~~~~---~~~~~v~~~~~  130 (224)
                      ..      +       ............++|+| +++++++++ .++.|.+||+.+++.  ...+.   .+......++|
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence            32      1       11123345678999999 777666655 689999999986643  12222   23345689999


Q ss_pred             cCCCCeEeeeecC--CCcEEEECC--CCCc--ceecccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEE--eCCCC
Q psy11351        131 NKAGTQLLGLRRR--LPPVLYNTR--SSSP--VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMW--RVPRD  201 (224)
Q Consensus       131 ~~~~~~l~~~~~d--~~v~v~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw--~~~~~  201 (224)
                      +|+|++|+++..+  +.|.+|++.  +++.  +..+.....+.     .++|+| ++++|++++ .++.|.+|  |..++
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~-----~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPR-----NFIITP-NGKYLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCC-----EEEECT-TSCEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCc-----eEEECC-CCCEEEEEECCCCCEEEEEEECCCC
Confidence            9999998776654  789999986  3442  22222222222     467888 687766665 67899996  44566


Q ss_pred             CeE
Q psy11351        202 DIY  204 (224)
Q Consensus       202 ~~~  204 (224)
                      +..
T Consensus       341 ~~~  343 (361)
T 3scy_A          341 LLT  343 (361)
T ss_dssp             CEE
T ss_pred             cEe
Confidence            654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=4e-18  Score=137.71  Aligned_cols=182  Identities=14%  Similarity=0.066  Sum_probs=128.6

Q ss_pred             eEEEEEeC---CCcEEEEeCCC---CceeeEEeccCCeeEEEEcCCCCcE-EEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          8 KVLRVIGN---DDHVISHDMAS---GDPIDFYLHERPVYGLSVDPSQDAI-FASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         8 ~~l~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +++++++.   +...+||.+..   +... .+.....+...+|+|++... +++++.+ .+.+||+.+++....... ..
T Consensus        76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~-~~  152 (582)
T 3o4h_A           76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARL-PG  152 (582)
T ss_dssp             EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEE-SS
T ss_pred             eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecC-CC
Confidence            77777775   45556655432   2222 33222234466788877444 4445544 555999998875544433 33


Q ss_pred             CeEEEEEcCCCCCeEEEecCC----CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC--CcEEEECCCC
Q psy11351         81 PFHAVMFNPVEARLVATANSK----DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL--PPVLYNTRSS  154 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~v~d~~~~  154 (224)
                        .+++|+| +++++++++.+    +.|++||+.+++. ..+..+...+..++|+|||+.|+++..++  .|++||+.++
T Consensus       153 --~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          153 --FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             --CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             --ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence              7899999 89999987766    7799999987754 46677888899999999999999877888  7999999988


Q ss_pred             Ccceec-ccCCccccee---eeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        155 SPVAQF-DHEGYYNSCT---MKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       155 ~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      +.. .+ .+...+..+.   ....+|+| ++.++++++.|+.+++|++
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET
T ss_pred             cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE
Confidence            776 44 4444444332   22234888 5788999999999999999

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=6.7e-16  Score=117.87  Aligned_cols=194  Identities=13%  Similarity=0.045  Sum_probs=130.7

Q ss_pred             CCCCcceE--EEEEe-------------CCCcEEEEeCC-CCceeeEEe-----ccCCeeEEEEcCCCCcEEEEec-CCC
Q psy11351          2 ASGDPIKV--LRVIG-------------NDDHVISHDMA-SGDPIDFYL-----HERPVYGLSVDPSQDAIFASAC-DDG   59 (224)
Q Consensus         2 a~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~-~d~   59 (224)
                      +++++|++  ++++.             .+|++.+|++. +++......     +...+.+++|+|+| ++++++. .++
T Consensus        89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~  167 (365)
T 1jof_A           89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTAN  167 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTT
T ss_pred             EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCC
Confidence            56677884  44553             68999999997 466544332     45689999999999 6666554 468


Q ss_pred             EEEEEecC-Ccccc--eeec--cCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecC--CCceee---Eeec-------C
Q psy11351         60 RVLLFDTR-SREEA--TELA--VNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTR--KPKEVL---MQYG-------S  121 (224)
Q Consensus        60 ~i~iwd~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~--~~~~~~---~~~~-------~  121 (224)
                      .|.+||+. +++..  ..+.  .+......++|+| +++++++++ .++.|.+|++.  +++...   .+..       +
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            99999998 66532  2232  2355689999999 787777665 47899999875  343221   1211       1


Q ss_pred             CC------ceeEEE-EcCCCCeEeeeecCC------CcEEEECC-CCCccee---cc-cCCcccceeeeEEEEeCC--CC
Q psy11351        122 CE------SCMSIR-FNKAGTQLLGLRRRL------PPVLYNTR-SSSPVAQ---FD-HEGYYNSCTMKSCCFAGT--QD  181 (224)
Q Consensus       122 ~~------~v~~~~-~~~~~~~l~~~~~d~------~v~v~d~~-~~~~~~~---~~-~~~~~~~~~~~~~~~~~~--~~  181 (224)
                      ..      .+..++ |+|+|++|++++.+.      .|.+|++. +++....   .. +......     ++|+|.  ++
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~-----~a~sp~~~dg  321 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS-----NAVSPCPWSD  321 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTC-----CCEEECTTCT
T ss_pred             ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccc-----ceecCCCcCC
Confidence            21      578999 999999988776433      79999996 5554321   21 2223343     455663  47


Q ss_pred             eEEEEcCC-CCeEEEEeCCCCC
Q psy11351        182 EYVVSGSD-DFVLYMWRVPRDD  202 (224)
Q Consensus       182 ~~l~s~~~-d~~v~iw~~~~~~  202 (224)
                      ++|++++. ++.|.+|++....
T Consensus       322 ~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETTE
T ss_pred             CEEEEEEcCCCeEEEEEEchhh
Confidence            78877765 5899999998763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=143.70  Aligned_cols=197  Identities=12%  Similarity=0.065  Sum_probs=133.8

Q ss_pred             CCCCcceEEEEEeC---------CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc
Q psy11351          2 ASGDPIKVLRVIGN---------DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA   72 (224)
Q Consensus         2 a~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~   72 (224)
                      +.+++|++|+.++.         +++|++||+.+++.+........+..++|+|+| +.|+.+. ++.|++||+.+++..
T Consensus        66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~  143 (719)
T 1z68_A           66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPF  143 (719)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCE
T ss_pred             EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcE
Confidence            45778999998876         789999999998873212223578999999999 7788775 789999999887754


Q ss_pred             eee-ccCCcCe-----------------EEEEEcCCCCCeEEEecCCC--------------------------------
Q psy11351         73 TEL-AVNSGPF-----------------HAVMFNPVEARLVATANSKD--------------------------------  102 (224)
Q Consensus        73 ~~~-~~~~~~i-----------------~~~~~~~~~~~~l~~~~~dg--------------------------------  102 (224)
                      ... .++...+                 .+++|+| +++.|++++.|.                                
T Consensus       144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~  222 (719)
T 1z68_A          144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP  222 (719)
T ss_dssp             ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred             EEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence            332 2222222                 4899999 889998877542                                


Q ss_pred             --cEEEEecCCCcee--eE------eecCCCceeEEEEcCCCCeEeeeecCC----CcEEEE----CCCCCcceec----
Q psy11351        103 --GIALYDTRKPKEV--LM------QYGSCESCMSIRFNKAGTQLLGLRRRL----PPVLYN----TRSSSPVAQF----  160 (224)
Q Consensus       103 --~v~i~d~~~~~~~--~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~v~d----~~~~~~~~~~----  160 (224)
                        .|++||+.+++..  ..      +..+...+..++|+||++.+++.....    .|.+||    +.+++....+    
T Consensus       223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~  302 (719)
T 1z68_A          223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIE  302 (719)
T ss_dssp             EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred             eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence              7889999877532  11      224777899999999987777644332    388899    7777655444    


Q ss_pred             -ccCCcccceeeeEEEEeCCCCeEEE--EcCCCC--eEEEEeCCCCC
Q psy11351        161 -DHEGYYNSCTMKSCCFAGTQDEYVV--SGSDDF--VLYMWRVPRDD  202 (224)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~--~v~iw~~~~~~  202 (224)
                       .+.+.+.........|+| +++.++  +...++  .|.+||+.+++
T Consensus       303 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          303 ESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             ECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             ccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCc
Confidence             233444310011356788 566433  344444  67778877665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=5.5e-16  Score=114.27  Aligned_cols=188  Identities=12%  Similarity=0.196  Sum_probs=135.6

Q ss_pred             CCcceEEEEEeC-CCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec--cC
Q psy11351          4 GDPIKVLRVIGN-DDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA--VN   78 (224)
Q Consensus         4 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~   78 (224)
                      .+.++++++... ++.|++|| .+++.+..+  .+...+.+++++|++ +++++...++.|.+||.. ++.+..+.  .+
T Consensus        86 ~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~  162 (286)
T 1q7f_A           86 RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKH  162 (286)
T ss_dssp             TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTT
T ss_pred             cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCc
Confidence            345666666643 88999999 566666666  344678999999998 788888888999999964 44444443  33


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC--CCceeEEEEcCCCCeEeeeecCC-CcEEEECCCCC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS--CESCMSIRFNKAGTQLLGLRRRL-PPVLYNTRSSS  155 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~-~v~v~d~~~~~  155 (224)
                      ...+..+++++ +++++++...++.|++||.. ++.+..+...  ...+..++++++|+++++...++ .|.+||. +++
T Consensus       163 ~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~  239 (286)
T 1q7f_A          163 LEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ  239 (286)
T ss_dssp             CSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred             cCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCC
Confidence            45689999999 78888888888999999975 4444444332  35788999999998888877775 8999995 466


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .+..+.......  ....++++| +++++++ +.|+.|++|++...
T Consensus       240 ~~~~~~~~~~~~--~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          240 LISALESKVKHA--QCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEEESSCCS--CEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEEcccCCCC--cceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence            665553211111  123467777 6887777 56899999998664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=2e-17  Score=137.20  Aligned_cols=193  Identities=11%  Similarity=0.073  Sum_probs=132.2

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccC-----CeeEEEEcCCCCcEEEEecCC---------CEEEEEecC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHER-----PVYGLSVDPSQDAIFASACDD---------GRVLLFDTR   67 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-----~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~   67 (224)
                      ...++++++++  |++|++||+.+++....+ +|..     ...++.|+|+| +.|+.++.+         +.+.+||+.
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~  100 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLN  100 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECC
Confidence            34667888886  999999999999987766 4432     23458899999 788888766         567799999


Q ss_pred             CcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCce-----------------eEEE
Q psy11351         68 SREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESC-----------------MSIR  129 (224)
Q Consensus        68 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v-----------------~~~~  129 (224)
                      +++.. .+..+...+...+|+| +++.|+.+ .++.|++||+.+++...... ++...+                 ..+.
T Consensus       101 ~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~  177 (740)
T 4a5s_A          101 KRQLI-TEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (740)
T ss_dssp             TTEEC-CSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCcEE-EcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence            98754 4666777899999999 88888887 56899999998775432211 222222                 3589


Q ss_pred             EcCCCCeEeeeecCC------------------------------------CcEEEECCC---CCc--ceecccCCc--c
Q psy11351        130 FNKAGTQLLGLRRRL------------------------------------PPVLYNTRS---SSP--VAQFDHEGY--Y  166 (224)
Q Consensus       130 ~~~~~~~l~~~~~d~------------------------------------~v~v~d~~~---~~~--~~~~~~~~~--~  166 (224)
                      |||||+.|+..+.|.                                    .|++||+.+   ++.  ...+.....  -
T Consensus       178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~  257 (740)
T 4a5s_A          178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI  257 (740)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred             ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence            999999998875432                                    366777776   531  122211000  0


Q ss_pred             cceeeeEEEEeCCCCeEEEEc----CCCCeEEEEeCCCCC
Q psy11351        167 NSCTMKSCCFAGTQDEYVVSG----SDDFVLYMWRVPRDD  202 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~s~----~~d~~v~iw~~~~~~  202 (224)
                      ..-.+..+.|+| +++.++..    +.+..|++||+.+++
T Consensus       258 ~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          258 GDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             SCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            112244577888 68865543    334589999999887

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=2.7e-16  Score=118.42  Aligned_cols=200  Identities=12%  Similarity=0.083  Sum_probs=142.1

Q ss_pred             CCCCCcceEEEEEeCC------------------------CcEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEE
Q psy11351          1 MASGDPIKVLRVIGND------------------------DHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFAS   54 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s   54 (224)
                      ||++..|+++++...+                        ++|.+||..+++.+..++  +-.....++++|++ +++++
T Consensus        29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g-~l~v~  107 (329)
T 3fvz_A           29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG-NYWVT  107 (329)
T ss_dssp             EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS-CEEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC-CEEEE
Confidence            4667788888888877                        479999999999877663  44578999999999 78899


Q ss_pred             ecCCCEEEEEecCCcc-cceee---------ccCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCceeeEeecC--
Q psy11351         55 ACDDGRVLLFDTRSRE-EATEL---------AVNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQYGS--  121 (224)
Q Consensus        55 ~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~--  121 (224)
                      ...++.|++||..... .+..+         ..+-.....++++|.++.++++.+ .++.|++|| .+++....+...  
T Consensus       108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~  186 (329)
T 3fvz_A          108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS  186 (329)
T ss_dssp             ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred             ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence            9999999999976442 34444         233446889999985677777776 689999999 445554444321  


Q ss_pred             --------CCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCC-----CCeEEEEc
Q psy11351        122 --------CESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGT-----QDEYVVSG  187 (224)
Q Consensus       122 --------~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~  187 (224)
                              -.....++++|+ +..+++...++.|++|+..+++.+..+.....-.  ....++++|.     +++.+++.
T Consensus       187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~--~~~~~~~~pg~~~~~~g~~~v~~  264 (329)
T 3fvz_A          187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR--NVFAISYIPGFLFAVNGKPYFGD  264 (329)
T ss_dssp             SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT--CEEEEEEETTEEEEEECCCCTTC
T ss_pred             CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC--CcceeeecCCEEEEeCCCEEecc
Confidence                    123789999998 6666666778889999999888877773211111  1123555550     23333444


Q ss_pred             CCCCeEEEEeCCCCCeE
Q psy11351        188 SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       188 ~~d~~v~iw~~~~~~~~  204 (224)
                      ..+..|++|+..+++..
T Consensus       265 ~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          265 QEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             SCCCCEEEEETTTCCEE
T ss_pred             CCCcEEEEEEcCCCeEE
Confidence            45669999999988765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.6e-16  Score=121.95  Aligned_cols=195  Identities=10%  Similarity=-0.029  Sum_probs=136.7

Q ss_pred             CCCCcceEEEEEeC-CC--cEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          2 ASGDPIKVLRVIGN-DD--HVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      +.+.+|++|+.++. ++  .|.+||+.+++..... ++...+....|+|++ +.|+.++.++.|++||+.+++....+..
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            35678898888887 67  4888999998877666 455555678899999 7888888899999999999886665555


Q ss_pred             CCcCeEEEE--EcCCCCCeEEE----------------------ecCCCcEEEEecCCCceeeEeecCCCceeEEEEcC-
Q psy11351         78 NSGPFHAVM--FNPVEARLVAT----------------------ANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK-  132 (224)
Q Consensus        78 ~~~~i~~~~--~~~~~~~~l~~----------------------~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-  132 (224)
                      +...+....  ++| ++.+++.                      ...+..|.+||+.+++ ...+..+...+..++|+| 
T Consensus       121 ~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          121 PAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             CTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT
T ss_pred             hhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC
Confidence            555444443  478 7777763                      2345779999999875 445555667789999999 


Q ss_pred             CCCeEeeeecC------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC-----CCeEEEEeCCCC
Q psy11351        133 AGTQLLGLRRR------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD-----DFVLYMWRVPRD  201 (224)
Q Consensus       133 ~~~~l~~~~~d------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~v~iw~~~~~  201 (224)
                      +|+.|+....+      ..|.++|+.+++......+...   .......|+| +++.|+..+.     +..|++||+.++
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~---~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG---ESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT---EEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC---cccccceECC-CCCEEEEEecCCCCCcceEEEEecCCC
Confidence            99988876653      3677778765544333232211   1123467888 6776544322     224999999998


Q ss_pred             Ce
Q psy11351        202 DI  203 (224)
Q Consensus       202 ~~  203 (224)
                      +.
T Consensus       275 ~~  276 (388)
T 3pe7_A          275 EN  276 (388)
T ss_dssp             CE
T ss_pred             ce
Confidence            75

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=3.8e-16  Score=117.59  Aligned_cols=196  Identities=13%  Similarity=0.147  Sum_probs=143.7

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCc-eeeEEe----------ccCCeeEEEEcC-CCCcEEEEec-CCCEEEEEecC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGD-PIDFYL----------HERPVYGLSVDP-SQDAIFASAC-DDGRVLLFDTR   67 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~~l~s~~-~d~~i~iwd~~   67 (224)
                      ||+++.|+++++...++.|++||..... .+..++          +-.....++++| ++ +++++.+ .++.|++|| .
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~  173 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-P  173 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-T
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-C
Confidence            3567788888888889999999987553 444442          233688999999 66 7888886 689999999 5


Q ss_pred             Ccccceeecc----------CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcC---
Q psy11351         68 SREEATELAV----------NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNK---  132 (224)
Q Consensus        68 ~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~---  132 (224)
                      +++.+..+..          +-.....++++|+++.++++...++.|++||..+++.+..+.  .+...+..++|+|   
T Consensus       174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL  253 (329)
T ss_dssp             TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred             CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence            5665555532          123478999999438888888899999999998777666653  3556788999999   


Q ss_pred             ---CCCeEeeeecCCCcEEEECCCCCcceeccc-CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        133 ---AGTQLLGLRRRLPPVLYNTRSSSPVAQFDH-EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       133 ---~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                         +|+..++...+..+++|+..+++.+..+.. ......  ...++++| ++.++++...++.|++|++...
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~--p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM--PHDIVASE-DGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS--EEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC--eeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence               444444445566899999999988887731 122111  23467777 6889999999999999997643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=1.3e-16  Score=130.62  Aligned_cols=193  Identities=8%  Similarity=-0.023  Sum_probs=131.6

Q ss_pred             CcceE-EEEEeC-CCcEEEEeCC--C-CceeeEEe-----ccCCeeEEEEcCCCCcEEEEecCC----------CEEEEE
Q psy11351          5 DPIKV-LRVIGN-DDHVISHDMA--S-GDPIDFYL-----HERPVYGLSVDPSQDAIFASACDD----------GRVLLF   64 (224)
Q Consensus         5 ~~~~~-l~~~~~-dg~i~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------~~i~iw   64 (224)
                      ++|+. |+.++. +..|.++++.  + ++......     |...+.+++|+|+| +.|+.++.+          ..|++|
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEE
Confidence            45666 665543 5667777776  3 55444444     66788999999999 788887776          689999


Q ss_pred             ecCC------cccceeec-cCCcCeEEEEEcCCCCCeEEEecCC--------CcEEEEecC-CC--ceeeEee-cCCCce
Q psy11351         65 DTRS------REEATELA-VNSGPFHAVMFNPVEARLVATANSK--------DGIALYDTR-KP--KEVLMQY-GSCESC  125 (224)
Q Consensus        65 d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~-~~--~~~~~~~-~~~~~v  125 (224)
                      |+.+      ++ ...+. .+...+..++|+| +++.|+.++.+        ..|.+||+. ++  .....+. .+...+
T Consensus       167 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          167 PLDGSAAADRSA-VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             ETTSTTTTCGGG-SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             ECCCCccccCCc-eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence            9987      54 34444 5556788899999 88888877644        379999998 45  1333333 457889


Q ss_pred             eEEEEcCCCCeEeeeecCCC--cEEEECCCCCcceecccCCcccc----eeeeEEEEeCCCCeEEEEcCCCCeEEEE--e
Q psy11351        126 MSIRFNKAGTQLLGLRRRLP--PVLYNTRSSSPVAQFDHEGYYNS----CTMKSCCFAGTQDEYVVSGSDDFVLYMW--R  197 (224)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d~~--v~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~d~~v~iw--~  197 (224)
                      ..+.|+|||++++++..++.  |++||+.+++......+...+..    .....++|+| ++.++++++. +.+++|  |
T Consensus       245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEE
T ss_pred             cceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEE
Confidence            99999999997777777774  55556656654433332222211    1112366777 6888888888 888888  6


Q ss_pred             CCCCC
Q psy11351        198 VPRDD  202 (224)
Q Consensus       198 ~~~~~  202 (224)
                      +.+++
T Consensus       323 ~~~~~  327 (662)
T 3azo_A          323 PESGE  327 (662)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            55554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=1e-14  Score=107.47  Aligned_cols=190  Identities=11%  Similarity=0.067  Sum_probs=136.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-------ccCCeeEEEE-cCCCCcEEEEecC-CCEEEEEecCCcccc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-------HERPVYGLSV-DPSQDAIFASACD-DGRVLLFDTRSREEA   72 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~-~~~~~~~l~s~~~-d~~i~iwd~~~~~~~   72 (224)
                      +.+..++++++...++.|.+||.+ ++.+..+.       +...+.++++ .+++ +++++... ++.|.+|| .+++.+
T Consensus        36 ~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d-~~g~~~  112 (286)
T 1q7f_A           36 AVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYN-QYGQFV  112 (286)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEEC-TTSCEE
T ss_pred             EECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEEC-CCCcEE
Confidence            456678888888889999999987 55555542       3357899999 4666 66666643 78999999 556655


Q ss_pred             eeec-cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         73 TELA-VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        73 ~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      ..+. .+...+..++++| +++++++...++.|.+||.. ++....+.  .+...+..++++|+|+.+++...++.|++|
T Consensus       113 ~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          113 RKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             EEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             EEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence            5553 2345689999999 77888888888999999965 44444443  344568999999999987777778899999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC-eEEEEeCCC
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF-VLYMWRVPR  200 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~v~iw~~~~  200 (224)
                      |.. ++.+..+...+...  ....+++++ +++++++...++ .|.+|+...
T Consensus       191 ~~~-g~~~~~~~~~g~~~--~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          191 NYE-GQYLRQIGGEGITN--YPIGVGINS-NGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             ETT-CCEEEEESCTTTSC--SEEEEEECT-TCCEEEEECSSSCEEEEECTTS
T ss_pred             cCC-CCEEEEEccCCccC--CCcEEEECC-CCCEEEEeCCCCEEEEEECCCC
Confidence            974 55555553322111  123467777 688888887776 999999643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=1.5e-16  Score=132.02  Aligned_cols=197  Identities=10%  Similarity=-0.000  Sum_probs=134.4

Q ss_pred             CCCcceEEEEEeCC---------CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          3 SGDPIKVLRVIGND---------DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         3 ~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      .+.+|++|+.++.+         +.+.+||+.+++......|...+...+|+|+| +.|+.+. ++.|++||+.+++..+
T Consensus        69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEE
Confidence            36789999998876         56679999999877666788899999999999 7777774 6899999998876433


Q ss_pred             e-eccCCcCe-----------------EEEEEcCCCCCeEEEecCCC---------------------------------
Q psy11351         74 E-LAVNSGPF-----------------HAVMFNPVEARLVATANSKD---------------------------------  102 (224)
Q Consensus        74 ~-~~~~~~~i-----------------~~~~~~~~~~~~l~~~~~dg---------------------------------  102 (224)
                      . ..++...+                 ..+.|+| +++.|+.++.|.                                 
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~  225 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN  225 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence            2 12322222                 3589999 888888764221                                 


Q ss_pred             ---cEEEEecCC---Cc--eeeEee------cCCCceeEEEEcCCCCeEeeeec----CCCcEEEECCCCC----c--ce
Q psy11351        103 ---GIALYDTRK---PK--EVLMQY------GSCESCMSIRFNKAGTQLLGLRR----RLPPVLYNTRSSS----P--VA  158 (224)
Q Consensus       103 ---~v~i~d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----d~~v~v~d~~~~~----~--~~  158 (224)
                         .|++||+.+   ++  ....+.      ++...+..++|+|||+.++....    +..|++||+.+++    +  ..
T Consensus       226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~  305 (740)
T 4a5s_A          226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR  305 (740)
T ss_dssp             CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG
T ss_pred             CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE
Confidence               478899887   63  223333      26778999999999996665433    2369999999887    1  22


Q ss_pred             ec---ccCCcccceeeeEEEEeCCCCeEEE-EcC-CC--CeEEEEeCCCCCe
Q psy11351        159 QF---DHEGYYNSCTMKSCCFAGTQDEYVV-SGS-DD--FVLYMWRVPRDDI  203 (224)
Q Consensus       159 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~-s~~-~d--~~v~iw~~~~~~~  203 (224)
                      .+   .+.+.+.........|+| |++.|+ ..+ .+  ..|++||+.+++.
T Consensus       306 ~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          306 QHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             CEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             EeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            21   244443310012356888 677655 444 33  4788899887654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=3e-15  Score=114.15  Aligned_cols=210  Identities=11%  Similarity=0.054  Sum_probs=134.0

Q ss_pred             CCCCCcceEEEEEe----------CCCcEEEEeCCCCceeeEEe-------ccCCeeEEEEcCCCCcEEEEecC--CCEE
Q psy11351          1 MASGDPIKVLRVIG----------NDDHVISHDMASGDPIDFYL-------HERPVYGLSVDPSQDAIFASACD--DGRV   61 (224)
Q Consensus         1 ~a~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~--d~~i   61 (224)
                      |++++++++++++.          .+++|.+||..+.+.+..+.       +......++++|++ ++|+++..  +++|
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSI  133 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEE
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCeE
Confidence            45678888888876          36789999999988877662       23567889999999 67777653  6899


Q ss_pred             EEEecCCccccee-eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC-Ccee------------------------
Q psy11351         62 LLFDTRSREEATE-LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK-PKEV------------------------  115 (224)
Q Consensus        62 ~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~------------------------  115 (224)
                      .+||+.+++.+.. +... . ...+.+.|.+...+++.+.||.+.+|++.. ++..                        
T Consensus       134 ~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            9999999887766 4321 1 122334442334444444555555544432 1111                        


Q ss_pred             -----------------------e--Eee--c----C----CCceeEEEEcCCCCeEeeeec-----------CCCcEEE
Q psy11351        116 -----------------------L--MQY--G----S----CESCMSIRFNKAGTQLLGLRR-----------RLPPVLY  149 (224)
Q Consensus       116 -----------------------~--~~~--~----~----~~~v~~~~~~~~~~~l~~~~~-----------d~~v~v~  149 (224)
                                             .  .+.  .    .    ......++|+|+++.++++..           .+.|.+|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence                                   0  000  0    0    001112788999888877643           3469999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC--CeEeeeeeeEeeCCceeEEEee
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD--DIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      |+.+++.+..+.... ...     ++|+| ++++|++++. +.|.+||..++  +..  ......|.....+.+.|
T Consensus       292 D~~t~~~v~~i~~~~-p~~-----ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~--~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD-ALS-----MTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLL--RTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             ETTTTEEEEEEECTT-CCE-----EEEET-TTTEEEEECS-SCEEEEECSSSSCEEE--EEETTSCSSEEEEEECC
T ss_pred             ECCCCcEEEEEecCC-eeE-----EEECC-CCCEEEEeCC-CeEEEEECCCCcceee--EEeccCCCCcEEEEecC
Confidence            999999888884333 444     56666 6888888776 99999999999  654  11111255555666655

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=7.2e-16  Score=126.23  Aligned_cols=191  Identities=9%  Similarity=0.002  Sum_probs=128.9

Q ss_pred             CCCCcceEEEEEeCC----------CcEEEEeCCC------CceeeEE-eccCCeeEEEEcCCCCcEEEEecCC------
Q psy11351          2 ASGDPIKVLRVIGND----------DHVISHDMAS------GDPIDFY-LHERPVYGLSVDPSQDAIFASACDD------   58 (224)
Q Consensus         2 a~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d------   58 (224)
                      +.+.+|+.|+.++.|          .+|++||+.+      ++..... .+...+..++|+|+| +.|+.++.+      
T Consensus       136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~  214 (662)
T 3azo_A          136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPW  214 (662)
T ss_dssp             EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTT
T ss_pred             EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCC
Confidence            345778889988877          5899999998      6666555 566788899999999 777766644      


Q ss_pred             --CEEEEEecC-Cc---ccceeeccCCcCeEEEEEcCCCCCeEEEecCCC--cEEEEecCCCceeeEeecCCCc------
Q psy11351         59 --GRVLLFDTR-SR---EEATELAVNSGPFHAVMFNPVEARLVATANSKD--GIALYDTRKPKEVLMQYGSCES------  124 (224)
Q Consensus        59 --~~i~iwd~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~------  124 (224)
                        ..|.+||+. ++   +.......+...+..+.|+| +++++++++.++  .|.+||+.+++. ..+..+...      
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w  292 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLW  292 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCC
T ss_pred             CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCce-eecccccccccCccc
Confidence              489999998 56   43334445567899999999 777888888888  566666655543 333322211      


Q ss_pred             ---eeEEEEcCCCCeEeeeecCCCcEEE--ECCCCCcceec-ccCCcccceeeeEE-EEeCCCCeEEEEcCCCC--eEEE
Q psy11351        125 ---CMSIRFNKAGTQLLGLRRRLPPVLY--NTRSSSPVAQF-DHEGYYNSCTMKSC-CFAGTQDEYVVSGSDDF--VLYM  195 (224)
Q Consensus       125 ---v~~~~~~~~~~~l~~~~~d~~v~v~--d~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~--~v~i  195 (224)
                         +..++|+|+++++++++. +.+++|  |+.+++ +..+ .+.+.+..     + .+.+ +.-++++++.+.  .|..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~-----~~s~~~-~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAA-----TLTVSG-TRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEE-----EEEEET-TEEEEEEEETTEEEEEEE
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEE-----EEecCC-CEEEEEEcCCCCCCEEEE
Confidence               467899999999999888 999999  555554 4444 33333322     2 2332 223344445554  5666


Q ss_pred             EeCCCCCe
Q psy11351        196 WRVPRDDI  203 (224)
Q Consensus       196 w~~~~~~~  203 (224)
                      +|+.+++.
T Consensus       365 ~d~~~g~~  372 (662)
T 3azo_A          365 LDTVTGRA  372 (662)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCce
Confidence            67777765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.68  E-value=7.9e-16  Score=117.27  Aligned_cols=169  Identities=8%  Similarity=0.010  Sum_probs=124.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCc-----------eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGD-----------PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      |+++...++++|+.+ .+++|+++..+           ......+.. |+.++|  ++ ++|+++ .++.|++||+++..
T Consensus        44 ais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~  117 (388)
T 1xip_A           44 DISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS  117 (388)
T ss_dssp             EEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT
T ss_pred             EEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh
Confidence            556667789999887 46679865332           223446777 999999  66 788888 88999999998877


Q ss_pred             cceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         71 EATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      .......++..+.++.+.+ .  .+++++.||.+.+||+.+++...    +...|++++|+|+|  ++.+..||++++|+
T Consensus       118 ~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~  188 (388)
T 1xip_A          118 EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFA  188 (388)
T ss_dssp             CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred             ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence            6556667778888888776 3  38888999999999999775432    34689999999999  67888999999999


Q ss_pred             CCCCCc--ceecccCCcc-----cceeeeEEEEeCCCCeEEEE
Q psy11351        151 TRSSSP--VAQFDHEGYY-----NSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       151 ~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s  186 (224)
                      .+.++.  ..++.....+     ....+..++|.+ ++.++++
T Consensus       189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             CCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            877664  4444110000     123455678887 5777765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=3.5e-15  Score=114.56  Aligned_cols=196  Identities=10%  Similarity=-0.035  Sum_probs=130.6

Q ss_pred             CCCCcceEEEEEeCC---CcEEEEeCCCCceeeEEeccCC-eeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          2 ASGDPIKVLRVIGND---DHVISHDMASGDPIDFYLHERP-VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      +.+++|++|+.....   ..|.+||+.+++......+... ...+.|+|++ +.|+.++.++.|++||+.+++.......
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~~  120 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIYTV  120 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEec
Confidence            456778887776543   3688899998876655543333 3348899999 7888888888999999988775544443


Q ss_pred             CCcCeEE-------------------EEEcCCCCCeEEEe-----cCCCcEEEEecCCCceeeEeecCCCceeEEEEcC-
Q psy11351         78 NSGPFHA-------------------VMFNPVEARLVATA-----NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNK-  132 (224)
Q Consensus        78 ~~~~i~~-------------------~~~~~~~~~~l~~~-----~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-  132 (224)
                      +......                   +.|+| +++.++..     ..+..|.+||+.+++.. .+..+...+..+.|+| 
T Consensus       121 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~sp~  198 (396)
T 3c5m_A          121 DEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELE-VIHQDTAWLGHPIYRPF  198 (396)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT
T ss_pred             ccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEE-eeccCCcccccceECCC
Confidence            3332222                   35677 56655543     35678999999887543 3345667789999999 


Q ss_pred             CCCeEeeeecC------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCC
Q psy11351        133 AGTQLLGLRRR------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRD  201 (224)
Q Consensus       133 ~~~~l~~~~~d------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~  201 (224)
                      +++.|+..+.+      ..|.+||+.+++......+..   ...+..+.|+| ++++|+.++.+     +.|++||+.++
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~---~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          199 DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE---GESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT---TEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC---CccccceEECC-CCCEEEEEecCCCCccceEEEEECCCC
Confidence            78877665543      368888987655333322111   12244578888 67766655433     45999999988


Q ss_pred             CeE
Q psy11351        202 DIY  204 (224)
Q Consensus       202 ~~~  204 (224)
                      +..
T Consensus       275 ~~~  277 (396)
T 3c5m_A          275 ENE  277 (396)
T ss_dssp             CEE
T ss_pred             CeE
Confidence            653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=7.1e-15  Score=107.28  Aligned_cols=194  Identities=13%  Similarity=0.112  Sum_probs=135.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.+.+++++++.. ++.|.+||..+....... .....+.+++++|++ +++++...++.|.+|+..+............
T Consensus        73 ~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  150 (270)
T 1rwi_B           73 AVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLN  150 (270)
T ss_dssp             EECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCC
T ss_pred             EECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCC
Confidence            4455677666655 889999998766543322 333678999999998 6888777788999998655443322222334


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      ....+++++ +++++++...++.|.+||................+..++++++|..+++...++.|.+|+..+..... .
T Consensus       151 ~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~  228 (270)
T 1rwi_B          151 DPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L  228 (270)
T ss_dssp             SCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C
T ss_pred             CceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e
Confidence            578899999 77888877778899999988664433222333678899999999777766678889999986543322 2


Q ss_pred             ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        161 DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ...+ ..  ....+++.+ +++++++...++.|+++++...+.
T Consensus       229 ~~~~-~~--~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          229 PFTG-LN--TPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCS-CS--CEEEEEECT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ccCC-CC--CceeEEECC-CCCEEEEECCCCEEEEEcCCCccc
Confidence            1111 11  123466777 678888888999999999887654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=5e-14  Score=105.93  Aligned_cols=194  Identities=8%  Similarity=0.048  Sum_probs=134.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCC----CEEEEEecCCcccceeec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDD----GRVLLFDTRSREEATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~   76 (224)
                      +.++++++++++..++.|.+||.++++..... .+...+.+++++|++ +++++...+    +.|.+||..+++....+.
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~  129 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIE  129 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence            34566787788888999999999988876655 567889999999998 777777666    689999988776442332


Q ss_pred             --cCCcCeEEEEEcCCCCCeEEEecC------CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee-ecCCCcE
Q psy11351         77 --VNSGPFHAVMFNPVEARLVATANS------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL-RRRLPPV  147 (224)
Q Consensus        77 --~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~  147 (224)
                        .+...+..++++| +++++++...      .+.|..+|...++. ..+......+..++|+|+++.|+.+ +.++.|.
T Consensus       130 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          130 DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             cCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence              2345789999999 7787777653      35566677654432 2333333457889999999866554 4578899


Q ss_pred             EEECCC-CCcceec------ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        148 LYNTRS-SSPVAQF------DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       148 v~d~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +||+.+ +.....+      ...+.   .....+++.+ +++++++...++.|.+||.. ++.
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~---~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~-g~~  265 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGH---EGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-GYP  265 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSS---SEEEEEEEBT-TCCEEEEEETTTEEEEECTT-SCE
T ss_pred             EEEecCCCcCcccccceEEEecCCC---CCCCceEECC-CCCEEEEEcCCCEEEEECCC-CCE
Confidence            999964 3333221      11110   1233467777 68887877778899999984 443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=3.6e-14  Score=106.81  Aligned_cols=194  Identities=8%  Similarity=-0.017  Sum_probs=136.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccC------CeeEEEEcCCCCcEEEEec-CCCEEEEEecCCccccee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHER------PVYGLSVDPSQDAIFASAC-DDGRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~   74 (224)
                      +.+++++.+++...++.|.+||..+++....+.-..      ....+++ ..+ .++++.. .++.|.++|..+++.+..
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEE
Confidence            343445555555589999999999998877664333      5667887 333 5555554 489999999999887777


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCC----------CcEEEEecCCCceeeEeec-CCCceeEEEEcCCCCeEeeeecC
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSK----------DGIALYDTRKPKEVLMQYG-SCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      +... .....+.++| ++++++++..+          +.|.++|..+++....+.- .......++|+|+++.|+++.. 
T Consensus       168 i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          168 LTIG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             EECS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             EEcC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence            6543 3356888999 77877777654          7899999998865544442 2346889999999999888765 


Q ss_pred             CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEc----CCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSG----SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~v~iw~~~~~~~~  204 (224)
                       .|.+||+.+++.....-....  .-....++++|.++.++++.    ..++.|.+||.. ++..
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             -EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence             899999988775422110100  11233477888667777887    678999999998 7654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=2.5e-14  Score=106.01  Aligned_cols=187  Identities=9%  Similarity=-0.067  Sum_probs=130.4

Q ss_pred             CCCcce-EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC---
Q psy11351          3 SGDPIK-VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN---   78 (224)
Q Consensus         3 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---   78 (224)
                      .+..++ +++++..++.|..||..++ ......+...+.+++++|++ +++++...++.|.+||..+++........   
T Consensus        35 ~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~  112 (296)
T 3e5z_A           35 YVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGK  112 (296)
T ss_dssp             EEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCC
Confidence            445566 7888888999999999987 33333567789999999998 78888777899999999877643332211   


Q ss_pred             -CcCeEEEEEcCCCCCeEEE----ec-------------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         79 -SGPFHAVMFNPVEARLVAT----AN-------------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        79 -~~~i~~~~~~~~~~~~l~~----~~-------------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                       ...+..++++| +++++++    |+             ..+.|..++.. + ....+..+......++|+|+++.+++.
T Consensus       113 ~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~  189 (296)
T 3e5z_A          113 KLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSD  189 (296)
T ss_dssp             ECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEE
T ss_pred             CCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEe
Confidence             22467899999 8888887    33             13456666654 3 344455566677899999999988766


Q ss_pred             ecCCCcEEEECC-CCCc---ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        141 RRRLPPVLYNTR-SSSP---VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       141 ~~d~~v~v~d~~-~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.++.|++|++. +++.   ...+ ...+.+..     +++.+ +++++++.  ++.|.+|+.. ++.
T Consensus       190 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~-----i~~d~-~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          190 TGDNATHRYCLNARGETEYQGVHFTVEPGKTDG-----LRVDA-GGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS-----EEEBT-TSCEEEEE--TTEEEEECTT-SCE
T ss_pred             CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe-----EEECC-CCCEEEEc--CCeEEEECCC-CCE
Confidence            777889999987 4443   1222 12222333     55666 67776666  7899999986 544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=3e-14  Score=117.70  Aligned_cols=195  Identities=6%  Similarity=-0.049  Sum_probs=132.5

Q ss_pred             CCCCcceEEEEEeCCC-----cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCE----------------
Q psy11351          2 ASGDPIKVLRVIGNDD-----HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGR----------------   60 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~----------------   60 (224)
                      +.+++|++||.++.++     +|++||+.+++..........+..++|+|++ +.|+.++.++.                
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQK  209 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-CEEEEEEECCccccccccccccCCCCE
Confidence            3567788888766543     8999999999887644222337789999999 67777766655                


Q ss_pred             EEEEecCCcccc--eeec--cCCcCeEEEEEcCCCCCeEEEecC-----CCcEEEEecCC------Cc-eeeEeecCCCc
Q psy11351         61 VLLFDTRSREEA--TELA--VNSGPFHAVMFNPVEARLVATANS-----KDGIALYDTRK------PK-EVLMQYGSCES  124 (224)
Q Consensus        61 i~iwd~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~i~d~~~------~~-~~~~~~~~~~~  124 (224)
                      |++|++.+++..  ..+.  .+...+..+.|+| ++++|+..+.     +..|.+||+.+      +. ....+..+...
T Consensus       210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~  288 (710)
T 2xdw_A          210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG  288 (710)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS
T ss_pred             EEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc
Confidence            999999887632  2222  2455678999999 7777776653     56899999986      43 34555555555


Q ss_pred             eeEEEEcCCCCeEeeeecCC----CcEEEECCCCCc--ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCC--eEEE
Q psy11351        125 CMSIRFNKAGTQLLGLRRRL----PPVLYNTRSSSP--VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF--VLYM  195 (224)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d~----~v~v~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~v~i  195 (224)
                      +.. .|+|+|+.|+..+.++    .|.+||+.++..  ...+ .+...   ..+..+.|++ ++.++++...|+  .|.+
T Consensus       289 ~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~-~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          289 EYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK---DVLEWVACVR-SNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             CEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---CEEEEEEEET-TTEEEEEEEETTEEEEEE
T ss_pred             EEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC---CeEEEEEEEc-CCEEEEEEEECCEEEEEE
Confidence            554 5889998887765533    489999987642  2333 33321   1233466665 678888888887  4666


Q ss_pred             EeCCCCCe
Q psy11351        196 WRVPRDDI  203 (224)
Q Consensus       196 w~~~~~~~  203 (224)
                      |++.+++.
T Consensus       364 ~~~~~g~~  371 (710)
T 2xdw_A          364 HDLATGAL  371 (710)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCCE
Confidence            78766654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=3e-14  Score=109.24  Aligned_cols=198  Identities=11%  Similarity=0.077  Sum_probs=128.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEE--EcCCCCcEEEE----------------------ec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLS--VDPSQDAIFAS----------------------AC   56 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~--~~~~~~~~l~s----------------------~~   56 (224)
                      +.+.+++.|+.++.++.|++||+.+++..... .+...+....  ++|++ .+++.                      ..
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccC
Confidence            34677889999999999999999999877666 3444443343  48888 66653                      33


Q ss_pred             CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecC------CCcEEEEecCCCceeeEeecCC--CceeEE
Q psy11351         57 DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANS------KDGIALYDTRKPKEVLMQYGSC--ESCMSI  128 (224)
Q Consensus        57 ~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~--~~v~~~  128 (224)
                      .+..|.+||+.+++. ..+..+...+..+.|+|.+++.++....      ...|.++|+...+ ...+..+.  ..+..+
T Consensus       166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHE  243 (388)
T ss_dssp             CCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccc
Confidence            557899999998864 4444556778999999933455554443      2368888876543 34444443  357788


Q ss_pred             EEcCCCCeEeeeec-CC----CcEEEECCCCCcceecccCCcccc-eeeeEEEEeCCCCeEEEEc---------CCCCeE
Q psy11351        129 RFNKAGTQLLGLRR-RL----PPVLYNTRSSSPVAQFDHEGYYNS-CTMKSCCFAGTQDEYVVSG---------SDDFVL  193 (224)
Q Consensus       129 ~~~~~~~~l~~~~~-d~----~v~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~---------~~d~~v  193 (224)
                      .|+|+|+.|+..+. ++    .|++||+.+++........+.... .......|+| +++.|+..         ..+..|
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEE
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEE
Confidence            99999998866443 22    299999998875333222221000 0011125666 67766543         556799


Q ss_pred             EEEeCCCCCe
Q psy11351        194 YMWRVPRDDI  203 (224)
Q Consensus       194 ~iw~~~~~~~  203 (224)
                      ++||+.+++.
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=2.8e-14  Score=107.35  Aligned_cols=187  Identities=11%  Similarity=0.012  Sum_probs=137.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC-----c
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-----G   80 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~   80 (224)
                      .++++++...++.|.+||.++++.+..+........+++++++ +++++...++.|.+||..+++....+....     .
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~  131 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESG  131 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence            3556677777899999999999998888666788999999987 676766588999999999988766665332     1


Q ss_pred             CeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC----------CCcEEE
Q psy11351         81 PFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR----------LPPVLY  149 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~v~v~  149 (224)
                      ....+++ . ++.++++.. .++.|.++|+.+++....+.. ......+.++|+|++++++..+          +.|.++
T Consensus       132 ~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          132 STEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             BCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            3456666 3 556666654 488999999998876655543 3445788999999977776654          689999


Q ss_pred             ECCCCCcceecccC-CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        150 NTRSSSPVAQFDHE-GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       150 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |..+++....+... +.    ....++++| +++.|..+..  .|.+||..+++.
T Consensus       209 d~~t~~v~~~~~~~~g~----~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          209 DAETFTVEKQFKFKLGD----WPSEVQLNG-TRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             ETTTTEEEEEEECCTTC----CCEEEEECT-TSCEEEEESS--SEEEEETTCSSC
T ss_pred             ECCCCeEEEEEecCCCC----CceeEEEec-CCCEEEEEcc--EEEEEECCCCce
Confidence            99988876665321 11    123477777 5666665543  899999988775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=2.5e-14  Score=104.37  Aligned_cols=192  Identities=10%  Similarity=0.051  Sum_probs=129.6

Q ss_pred             CCCCcceEEE-EEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec-cC
Q psy11351          2 ASGDPIKVLR-VIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA-VN   78 (224)
Q Consensus         2 a~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~   78 (224)
                      +.++.+++++ +...++.|.+||..+....... .+...+.++++++++ +++++.. ++.|.+||...... ..+. ..
T Consensus        30 ~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~  106 (270)
T 1rwi_B           30 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQ-TVLPFDG  106 (270)
T ss_dssp             EECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCC-EECCCCS
T ss_pred             EECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceE-eeeecCC
Confidence            4556677676 5467889999998765543322 344578899999998 6666666 88999999876543 2232 22


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      ......+++++ +++++++...++.|.+|+..+.............+..++++++|+.+++...++.|.+||..+.....
T Consensus       107 ~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  185 (270)
T 1rwi_B          107 LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV  185 (270)
T ss_dssp             CSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred             cCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe
Confidence            35689999999 77888887778899999866543322222233467889999999877766667889999987655433


Q ss_pred             ec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        159 QF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .. .....     ...+++.+ ++.++++...++.|.+|+......
T Consensus       186 ~~~~~~~~-----p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          186 LPFTDITA-----PWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCCSSCCS-----EEEEEECT-TCCEEEEETTTSCEEEECTTCSCC
T ss_pred             ecccCCCC-----ceEEEECC-CCCEEEEECCCCcEEEEcCCCCcc
Confidence            22 11122     23466666 578888877889999999876544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=6.4e-15  Score=113.07  Aligned_cols=191  Identities=12%  Similarity=0.052  Sum_probs=127.7

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-ccCCeeE-------------------EEEcCCCCcEEEEe-----cC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-HERPVYG-------------------LSVDPSQDAIFASA-----CD   57 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~l~s~-----~~   57 (224)
                      .++++++|+.++.++.|++||+.+++...... +......                   +.|+|++ +.++.+     ..
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~  166 (396)
T 3c5m_A           88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNP  166 (396)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCC
T ss_pred             ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCC
Confidence            36778899999999999999999988766553 3332222                   3467776 444433     46


Q ss_pred             CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCC------CcEEEEecCCCceeeEeecC--CCceeEEE
Q psy11351         58 DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSK------DGIALYDTRKPKEVLMQYGS--CESCMSIR  129 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~--~~~v~~~~  129 (224)
                      +..|.+||+.+++..... .+...+..+.|+|.++..++..+.+      ..|.+||+..++ ...+..+  ...+..++
T Consensus       167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCCTTEEEEEEE
T ss_pred             cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccCCCccccceE
Confidence            779999999887754433 4566789999999445545444333      368888887553 2333332  23578899


Q ss_pred             EcCCCCeEeeeecC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC----------------
Q psy11351        130 FNKAGTQLLGLRRR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS----------------  188 (224)
Q Consensus       130 ~~~~~~~l~~~~~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------------  188 (224)
                      |+|+|++|+..+.+     +.|++||+.+++........+      .. ..|+|.++++++.++                
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS------EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence            99999988776544     339999998876543322221      11 678873466776543                


Q ss_pred             CCCeEEEEeCCCCCe
Q psy11351        189 DDFVLYMWRVPRDDI  203 (224)
Q Consensus       189 ~d~~v~iw~~~~~~~  203 (224)
                      .+..|++||+.+++.
T Consensus       318 ~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCCEEEEEETTTTBC
T ss_pred             CCCcEEEEecccCce
Confidence            347899999988764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.62  E-value=2.9e-14  Score=107.24  Aligned_cols=187  Identities=10%  Similarity=0.046  Sum_probs=127.2

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      .+..+..++..+.++.++.|   .++....+ .+...+.+++|+|++ ++++++..++.|.+||..+++.......+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~   88 (333)
T 2dg1_A           13 YSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKAN   88 (333)
T ss_dssp             SCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSS
T ss_pred             ecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCC
Confidence            34444455555678888888   33444433 566778999999998 78888888999999999887754444345678


Q ss_pred             eEEEEEcCCCCCeEEEecCC----CcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeec------CCCcEEE
Q psy11351         82 FHAVMFNPVEARLVATANSK----DGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRR------RLPPVLY  149 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d~~v~v~  149 (224)
                      +.+++++| +++++++...+    +.|.+||..+......+.  .....+..++++|+|+.+++...      .+.|..+
T Consensus        89 ~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~  167 (333)
T 2dg1_A           89 PAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  167 (333)
T ss_dssp             EEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             cceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence            99999999 77888777666    689999988765432222  24457899999999987776543      2445566


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCC
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~  200 (224)
                      |..+++..........     ...++|+| +++ ++++.+.++.|.+|++.+
T Consensus       168 ~~~~~~~~~~~~~~~~-----~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          168 SPDFRTVTPIIQNISV-----ANGIALST-DEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CTTSCCEEEEEEEESS-----EEEEEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             eCCCCEEEEeecCCCc-----ccceEECC-CCCEEEEEeCCCCeEEEEEecC
Confidence            6554443222221111     23467777 566 456666788999999964

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=1.7e-12  Score=104.16  Aligned_cols=200  Identities=12%  Similarity=0.039  Sum_probs=139.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCC--CCceeeEEeccCCeeEEEEc----CCCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMA--SGDPIDFYLHERPVYGLSVD----PSQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      +++.+++++++++.|+.|.+||+.  +++.+..+........++|+    |+|..++++...++++.++|..+.+.+..+
T Consensus       203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i  282 (567)
T 1qks_A          203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ  282 (567)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence            457788999999999999999996  77777766555567899999    698444455556699999999998877665


Q ss_pred             cc----------CCc-CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeee-c
Q psy11351         76 AV----------NSG-PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLR-R  142 (224)
Q Consensus        76 ~~----------~~~-~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~  142 (224)
                      ..          |.. .+..+..++.+..+++....+|.|.++|....+.+.. ..........+.|+|+|++++++. .
T Consensus       283 ~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~  362 (567)
T 1qks_A          283 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA  362 (567)
T ss_dssp             ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             eccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC
Confidence            42          112 6788888885566777777789999999986543322 123445677899999999987765 5


Q ss_pred             CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCCC
Q psy11351        143 RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPRD  201 (224)
Q Consensus       143 d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~~  201 (224)
                      ++.|.++|+.+++.+..+.-.+..........-++|..+..++++. .++.|.++|..++
T Consensus       363 sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          363 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence            7889999999998766653201111100000113553355556654 4689999999873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=1.3e-13  Score=104.14  Aligned_cols=180  Identities=10%  Similarity=0.113  Sum_probs=119.8

Q ss_pred             CCCcceEEEEEeCC---C--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecC--------------------
Q psy11351          3 SGDPIKVLRVIGND---D--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD--------------------   57 (224)
Q Consensus         3 ~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--------------------   57 (224)
                      .+++|++|+..+.+   +  .|.+||+.+++......+.. +..+.|+|++ +.|+.++.                    
T Consensus        66 ~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           66 ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---
T ss_pred             ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecC
Confidence            46778888877654   2  48888998888777665555 9999999999 66666542                    


Q ss_pred             -------CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCC-------cEEEEecCCCceeeEeecCCC
Q psy11351         58 -------DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKD-------GIALYDTRKPKEVLMQYGSCE  123 (224)
Q Consensus        58 -------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~v~i~d~~~~~~~~~~~~~~~  123 (224)
                             ...|.+||+.+++.+..+.. . .+..+.|+| ++ +++++..++       ...+|.+.++ ....+..+ .
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~-~  217 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEK-V  217 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEE-E
T ss_pred             cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCC-ceEEeccC-c
Confidence                   36799999988876355544 3 788999999 77 777775542       3455544444 34444444 4


Q ss_pred             ceeEEEEcCCCCeEeeeecCC--------CcEEEECCCCCcceecc-cCCcccceeeeE-EEEeCCCCeEEEEcCCCCeE
Q psy11351        124 SCMSIRFNKAGTQLLGLRRRL--------PPVLYNTRSSSPVAQFD-HEGYYNSCTMKS-CCFAGTQDEYVVSGSDDFVL  193 (224)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~--------~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~v  193 (224)
                      .+..+  +|+|++|+..+.+.        .|++||  +++...... +...     +.. +.|+  ++ ++++++.++.+
T Consensus       218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~-----~~~~~~~s--dg-~~~~~~~~~~~  285 (347)
T 2gop_A          218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRG-----VGQAKIKD--GK-VYFTLFEEGSV  285 (347)
T ss_dssp             SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSE-----EEEEEEET--TE-EEEEEEETTEE
T ss_pred             ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcc-----cCCccEEc--Cc-EEEEEecCCcE
Confidence            44444  99999988776443        466777  444333222 2222     222 5676  46 88888999999


Q ss_pred             EEEeCCCCCe
Q psy11351        194 YMWRVPRDDI  203 (224)
Q Consensus       194 ~iw~~~~~~~  203 (224)
                      ++| +.+++.
T Consensus       286 ~l~-~~~g~~  294 (347)
T 2gop_A          286 NLY-IWDGEI  294 (347)
T ss_dssp             EEE-EESSSE
T ss_pred             EEE-EcCCce
Confidence            999 875543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.59  E-value=3.4e-16  Score=119.69  Aligned_cols=184  Identities=12%  Similarity=0.077  Sum_probs=107.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc-CeE-
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG-PFH-   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~i~-   83 (224)
                      .+..+++++.||.|+.||..+++.+..+.. +.+.+..+..++ ..+++++.|+.|+.||.++++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            456889999999999999999999887754 566666666666 6788888999999999999887665543211 110 


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccC
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE  163 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~  163 (224)
                      +..+.  .+..+++++.++.+..||.++++....+..+.    ...++|++..+++++.++.|+.||.++++.+..+...
T Consensus        86 sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           86 SPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             CceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence            00111  23467778889999999999997766554432    2356678889999999999999999999887766321


Q ss_pred             CcccceeeeEEEEeCCC---CeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        164 GYYNSCTMKSCCFAGTQ---DEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .. ..     ..+.+ +   +..+++++.||.|+.||..+|+..
T Consensus       160 ~~-~~-----~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          160 DY-AA-----SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             EE-CC-----BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             cc-cC-----ccccC-CccccceEEEECCCCEEEEEECCCCcEE
Confidence            11 11     11211 1   145667788999999999999873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=3.5e-12  Score=102.35  Aligned_cols=189  Identities=10%  Similarity=0.060  Sum_probs=138.9

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecC--CcccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR--SREEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i~~   84 (224)
                      +.++++...+++|.++|..+++.+..+.....+..+.|+|++ +++++++.|+.|.+||+.  +++.+..+..... ...
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~  244 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARS  244 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-Cce
Confidence            456777788999999999999999888666678899999999 788888999999999995  7777777765333 578


Q ss_pred             EEEc----CCCCCeEEEec-CCCcEEEEecCCCceeeEeecC-----------CCceeEEEEcCCCCeEee-eecCCCcE
Q psy11351         85 VMFN----PVEARLVATAN-SKDGIALYDTRKPKEVLMQYGS-----------CESCMSIRFNKAGTQLLG-LRRRLPPV  147 (224)
Q Consensus        85 ~~~~----~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~-~~~d~~v~  147 (224)
                      ++|+    | ++++++++. .++.+.++|..+.+.+..+.-.           ...+..+..++++..++. ...+|.|.
T Consensus       245 ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          245 IETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            9999    6 666666554 5689999999988776655421           225778888988665444 45568899


Q ss_pred             EEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEE-EcCCCCeEEEEeCCCCCeE
Q psy11351        148 LYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVV-SGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       148 v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++|....+.+...  .....     .....|+| ++++++ +...++.|.++|+.+++..
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~-----~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERF-----LHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSS-----EEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEecCCCccceeeeeecccc-----ccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEE
Confidence            9998765432222  11111     22466777 577654 4556789999999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.58  E-value=2.4e-13  Score=112.13  Aligned_cols=189  Identities=10%  Similarity=0.027  Sum_probs=122.4

Q ss_pred             CCcceEEEEEeCCC---c--EEEEeCCCCceeeEE-------eccCCeeEEEEcCCCCcEEE-----EecCCCEEEEEec
Q psy11351          4 GDPIKVLRVIGNDD---H--VISHDMASGDPIDFY-------LHERPVYGLSVDPSQDAIFA-----SACDDGRVLLFDT   66 (224)
Q Consensus         4 ~~~~~~l~~~~~dg---~--i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~-----s~~~d~~i~iwd~   66 (224)
                      ...|++++....++   .  +.+.+...++....+       +|...+..++|+|+| ++|+     .|+.+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEEC
Confidence            34566666665543   2  444455455544443       244478999999999 7777     5566689999999


Q ss_pred             CCcccc-eeeccCCcCeEEEEEcCCCCCeEEEecCCCc-------------EEEEecCCCcee--eEee--cCCCceeEE
Q psy11351         67 RSREEA-TELAVNSGPFHAVMFNPVEARLVATANSKDG-------------IALYDTRKPKEV--LMQY--GSCESCMSI  128 (224)
Q Consensus        67 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------------v~i~d~~~~~~~--~~~~--~~~~~v~~~  128 (224)
                      .+++.+ ..... ......++|+| +++.|+.++.+..             |++|++.+++..  ..+.  .+...+..+
T Consensus       155 ~tg~~~~~~~~~-~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          155 DSGEWSKVDVIE-GGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TTCCBCSSCCBS-CCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCCcCCcccC-cccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            998864 21111 11126899999 8888888877665             999999887531  2222  345678899


Q ss_pred             EEcCCCCeEeeeecCC----CcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC---CCCeEEEEeCCCC
Q psy11351        129 RFNKAGTQLLGLRRRL----PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS---DDFVLYMWRVPRD  201 (224)
Q Consensus       129 ~~~~~~~~l~~~~~d~----~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~v~iw~~~~~  201 (224)
                      .|+|||++|+..+.++    .|++++..+++......+......     ..+ + ++.+++...   .++.|.+||+.++
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE-----VHA-W-KDRFYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE-----EEE-E-TTEEEEEECTTCTTCEEEEEBTTBC
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE-----EEe-c-CCcEEEEECCCCCCCEEEEEeCCCC
Confidence            9999999998887665    577777655544333333332221     223 3 455555444   3689999999876


Q ss_pred             C
Q psy11351        202 D  202 (224)
Q Consensus       202 ~  202 (224)
                      +
T Consensus       306 ~  306 (695)
T 2bkl_A          306 A  306 (695)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=6.4e-13  Score=98.37  Aligned_cols=189  Identities=7%  Similarity=0.045  Sum_probs=127.0

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-----ccCCeeEEEEcCCCCcEEEE----ec-------------CCC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFAS----AC-------------DDG   59 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s----~~-------------~d~   59 (224)
                      +.++.++++++...++.|.+||.++++......     ....+.+++++|+| +++++    |.             ..+
T Consensus        75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCc
Confidence            456678887777777899999998887655441     12356789999998 78876    33             134


Q ss_pred             EEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC-CCce---eeEeecCCCceeEEEEcCCCC
Q psy11351         60 RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR-KPKE---VLMQYGSCESCMSIRFNKAGT  135 (224)
Q Consensus        60 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~  135 (224)
                      .|..++.. ++ ...+..+......++|+| +++++++.+.++.|.+||+. +++.   ...+..+...+..++++++|+
T Consensus       154 ~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          154 WVFRLAPD-GT-LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EEEEECTT-SC-EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             EEEEECCC-CC-EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            66666654 33 344445556678999999 77777888888999999997 3332   122222445667899999998


Q ss_pred             eEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        136 QLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       136 ~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++++.  ++.|.+||.. ++.+..+.....+..     ++|..++++.|++++.+ .+.-++..+.+.
T Consensus       231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~-----~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD-GDELGRVLTPQTTSN-----LCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEE--TTEEEEECTT-SCEEEEEECSSCCCE-----EEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EEEEc--CCeEEEECCC-CCEEEEEECCCCcee-----EEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            66665  7779999986 666666632222444     55532267777776665 455666666554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=2.4e-13  Score=102.73  Aligned_cols=161  Identities=9%  Similarity=0.105  Sum_probs=106.9

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC---C--EEEEEecCCcccceeeccCCcCeEEEEEcCC
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD---G--RVLLFDTRSREEATELAVNSGPFHAVMFNPV   90 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~   90 (224)
                      ++.|.+||+.+++....    ..+..+.|+|+| +.|+.++.+   +  .|.+||+.+++....... .. +..++|+| 
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wsp-  113 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNE-  113 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECT-
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECC-
Confidence            66899999998876544    568899999999 677766543   3  478888887765444433 34 99999999 


Q ss_pred             CCCeEEEecC---------------------------CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC
Q psy11351         91 EARLVATANS---------------------------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        91 ~~~~l~~~~~---------------------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      +++.|+.++.                           ...|.+||+.+++....+.. . .+..+.|+|+| .++++..+
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence            7777776653                           25689999988765344444 3 78899999999 77776544


Q ss_pred             C-------CcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCC--------CeEEEEe
Q psy11351        144 L-------PPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDD--------FVLYMWR  197 (224)
Q Consensus       144 ~-------~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------~~v~iw~  197 (224)
                      .       ...+|.+.+++. ..+ .+ ..+       ..++| +++.|+.++.+        ..|.+||
T Consensus       191 ~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~-------~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          191 EIIPQYFKFWDIYIWEDGKE-EKMFEK-VSF-------YAVDS-DGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             CSSCCSSCCEEEEEEETTEE-EEEEEE-ESE-------EEEEE-CSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             cccccccccccEEEeCCCce-EEeccC-cce-------eeECC-CCCEEEEEEccccCCccccceEEEEC
Confidence            2       335554444433 333 22 111       11266 67777665533        4788888

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=1.8e-12  Score=95.19  Aligned_cols=176  Identities=10%  Similarity=0.006  Sum_probs=128.4

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEec--cCCeeEEEEcCCCCcEEEEecC-CCEEEEEecCCcccceeecc--
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLH--ERPVYGLSVDPSQDAIFASACD-DGRVLLFDTRSREEATELAV--   77 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~--   77 (224)
                      ...+|++++  +.++.|..||. +++.+..+..  ...+.++.+.|+| +++++.+. ++.+..+|. +++.+..+..  
T Consensus        44 ~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~  118 (276)
T 3no2_A           44 ATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFET  118 (276)
T ss_dssp             ECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred             ECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence            456778888  45778999999 7888877732  3578899999999 78888776 788888885 6666555431  


Q ss_pred             ----CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         78 ----NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        78 ----~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                          +......+++.+ +++++++...++.|..||.. ++.+..+... ..+.++...++|+.++++..++.|..+|..+
T Consensus       119 ~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          119 GIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             SCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             CCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence                112345567788 88999999999999999988 8777666543 4566788899999999988888899999999


Q ss_pred             CCcceecccC--CcccceeeeEEEEeCCCCeEEEEc
Q psy11351        154 SSPVAQFDHE--GYYNSCTMKSCCFAGTQDEYVVSG  187 (224)
Q Consensus       154 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~  187 (224)
                      ++.+.++...  ..........+...+ ++.++++.
T Consensus       196 G~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~  230 (276)
T 3no2_A          196 NRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICN  230 (276)
T ss_dssp             CCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEE
T ss_pred             CcEEEEecCCCCCCccccccccceEcC-CCCEEEEe
Confidence            9998888321  111111233445555 67777776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=5.5e-12  Score=93.04  Aligned_cols=190  Identities=8%  Similarity=-0.046  Sum_probs=132.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee--cc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL--AV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~   77 (224)
                      +.+..|+++++...++.|.+||.. ++.....  .....+.++++.+++ .++++...++.|..||.. ++ ...+  ..
T Consensus        21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~   96 (299)
T 2z2n_A           21 TVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK-GI-IKEYTLPN   96 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC-EEEEECSS
T ss_pred             EECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-Cc-EEEEeCCC
Confidence            446677777776668899999998 6554333  245679999999998 788877778899999976 33 2222  22


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      ....+..+++++ ++.++++...++.|..||. +++.... .......+..++++++|+.+++...++.|..||. +++.
T Consensus        97 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  173 (299)
T 2z2n_A           97 PDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI  173 (299)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             cCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence            345789999999 7888888777889999998 4433222 2234567899999999987777666778999998 5554


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..... .....  ....+++.+ ++.++++...++.|..||. +++.
T Consensus       174 ~~~~~-~~~~~--~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          174 TEFKI-PTPAS--GPVGITKGN-DDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEEC-SSTTC--CEEEEEECT-TSSEEEEETTTTEEEEECT-TCCE
T ss_pred             EEeeC-CCCCC--cceeEEECC-CCCEEEEccCCceEEEECC-CCcE
Confidence            33211 11111  123466666 5777777777889999998 6654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=1.9e-13  Score=112.67  Aligned_cols=188  Identities=7%  Similarity=-0.041  Sum_probs=122.9

Q ss_pred             CCCCcceEEE-----EEeCCCcEEEEeCCCCcee-eEEeccCCeeEEEEcCCCCcEEEEecCCCE-------------EE
Q psy11351          2 ASGDPIKVLR-----VIGNDDHVISHDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGR-------------VL   62 (224)
Q Consensus         2 a~~~~~~~l~-----~~~~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-------------i~   62 (224)
                      +.+++|++||     .|+.+.+|++||+.+++.+ ...........++|+|+| +.|+.++.|..             |+
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEE
Confidence            3567788888     4444568999999999875 211111112689999999 78888877765             99


Q ss_pred             EEecCCcccc----eeeccCCcCeEEEEEcCCCCCeEEEecCCC----cEEEEecCCCceeeEeecCCCceeEEEEcCCC
Q psy11351         63 LFDTRSREEA----TELAVNSGPFHAVMFNPVEARLVATANSKD----GIALYDTRKPKEVLMQYGSCESCMSIRFNKAG  134 (224)
Q Consensus        63 iwd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  134 (224)
                      +|++.+++..    .....+...+..+.|+| ++++++.++.++    .|.++|..++ ....+..+...+....+ ++|
T Consensus       206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~-~~g  282 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK-DFRLLVKGVGAKYEVHA-WKD  282 (695)
T ss_dssp             EEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS-SCEEEEECSSCCEEEEE-ETT
T ss_pred             EEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC-ceEEeecCCCceEEEEe-cCC
Confidence            9999887632    22233456788999999 777777666555    5777766544 34455555556666666 566


Q ss_pred             CeEeeeec----CCCcEEEECCCCCc---ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        135 TQLLGLRR----RLPPVLYNTRSSSP---VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       135 ~~l~~~~~----d~~v~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      . ++..+.    ++.|.+||+.++..   ...+.+...   ..+..+.|+  ++.++++...|+..++|.+.
T Consensus       283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS---ASLLSVSIV--GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS---CEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred             c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC---CeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            6 544443    46799999987653   222233211   112334555  57888999999988887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=8e-12  Score=95.54  Aligned_cols=191  Identities=12%  Similarity=-0.028  Sum_probs=123.5

Q ss_pred             CCCCCcceEEEEEe----------CCCcEEEEeCCCCceeeEEec--------cCCeeEEEEcCCCCcEEEEecC--CCE
Q psy11351          1 MASGDPIKVLRVIG----------NDDHVISHDMASGDPIDFYLH--------ERPVYGLSVDPSQDAIFASACD--DGR   60 (224)
Q Consensus         1 ~a~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~s~~~--d~~   60 (224)
                      |+++.++++++.+.          .++.|.+||..+.+.+..+.-        ......+.|+|+| ++|+.+..  ++.
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~  149 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPA  149 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCe
Confidence            45677888888775          367899999998887766522        1345689999999 67776653  588


Q ss_pred             EEEEecCCccccee-eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCcee------------------------
Q psy11351         61 VLLFDTRSREEATE-LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEV------------------------  115 (224)
Q Consensus        61 i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~------------------------  115 (224)
                      |.++| .+++.+.. +... .   ++.+.|.+.+.+++.+.||.+.++|. +++..                        
T Consensus       150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 98887766 5321 1   12223323333444444555444444 32211                        


Q ss_pred             --------------------------eEeec----------CCCceeEEEEcCCCCeEeeeec----------CCCcEEE
Q psy11351        116 --------------------------LMQYG----------SCESCMSIRFNKAGTQLLGLRR----------RLPPVLY  149 (224)
Q Consensus       116 --------------------------~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------d~~v~v~  149 (224)
                                                ..+.-          .......+.++|+++.+++...          ++.|.++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence                                      00000          0111233778899888777643          3579999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCe-EEEEcC-CCCeEEEEeCCCCCeE
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVSGS-DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~d~~v~iw~~~~~~~~  204 (224)
                      |+.+++.+..+...+....     +.|+| +++ +++++. .++.|.++|+.+++..
T Consensus       304 D~~t~~vv~~i~~g~~p~~-----i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          304 TGLVGQTSSQISLGHDVDA-----ISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ECCCCEEEEEEECCCCcCe-----EEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            9999998888854444444     56666 677 677766 5899999999999876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.52  E-value=2.9e-12  Score=99.16  Aligned_cols=197  Identities=11%  Similarity=0.070  Sum_probs=129.6

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceee---
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATEL---   75 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~---   75 (224)
                      ||++..++++++...++.|++||.++++............ ++|+|++ +.|+++..++  .|.+++...+.....+   
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~  213 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPTRIGQL  213 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCceeEEeeec
Confidence            3566778878887778999999999887766654334444 9999998 6777777655  8989988765543333   


Q ss_pred             -ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE----eecCCCce-e-EEEEcCC-CCeEeeeecCCCcE
Q psy11351         76 -AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM----QYGSCESC-M-SIRFNKA-GTQLLGLRRRLPPV  147 (224)
Q Consensus        76 -~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~v-~-~~~~~~~-~~~l~~~~~d~~v~  147 (224)
                       ........+++++|.++. |+.+..++.|..||..+......    ..+..... . .++|+|+ +.++++-..++.|+
T Consensus       214 ~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~  292 (409)
T 3hrp_A          214 GSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY  292 (409)
T ss_dssp             CTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             cchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence             213456788999994444 44466788999999987653222    11222222 3 8999996 44555555677889


Q ss_pred             EEECCCCCcceec-ccC---Cccc-------ceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCCCCe
Q psy11351        148 LYNTRSSSPVAQF-DHE---GYYN-------SCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPRDDI  203 (224)
Q Consensus       148 v~d~~~~~~~~~~-~~~---~~~~-------~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~~~~  203 (224)
                      .|+....  +..+ ...   +...       -.....++++| +++++++-+ .++.|+.|++.+++.
T Consensus       293 ~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          293 KITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEE
Confidence            9987643  2222 211   1000       00123467777 688888888 899999999877765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=4.2e-12  Score=96.78  Aligned_cols=177  Identities=11%  Similarity=0.022  Sum_probs=120.2

Q ss_pred             CCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEecCCcccceeeccC-----
Q psy11351         15 NDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASAC----------DDGRVLLFDTRSREEATELAVN-----   78 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-----   78 (224)
                      .|++|.+||..+++.+..+ .+..+  .++|+|++ ++++++.          .++.|.+||..+.+.+..+...     
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            4789999999999888776 33333  89999999 6777765          3678999999988877776532     


Q ss_pred             -CcCeEEEEEcCCCCCeEEEecC--CCcEEEEecCCCceeeEeecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCC-
Q psy11351         79 -SGPFHAVMFNPVEARLVATANS--KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRS-  153 (224)
Q Consensus        79 -~~~i~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~-  153 (224)
                       ......++++| ++++++++..  ++.|.+||+.+.+.+..+..... ...+.+.|++ ..+++.+.|+.+.+|+... 
T Consensus       106 ~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          106 GLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             BCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             cCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence             23456899999 8888887763  57899999999876555122222 2335677765 5677788899999998865 


Q ss_pred             CCcc------eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        154 SSPV------AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       154 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ++..      ..+........+..     ++ ++..++..+.++.+.++|+....
T Consensus       184 g~~~~~~~~~~~~~~~~~~~~~~~-----~~-~g~~~~~~~~~~~v~v~d~~~~~  232 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPIFIAP-----AL-DKDKAHFVSYYGNVYSADFSGDE  232 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCBCSCC-----EE-CSSEEEEEBTTSEEEEEECSSSS
T ss_pred             CcEeeeccccceEcCCCCceEEEe-----cc-cCCEEEEEeCCCeEEEEEecCCC
Confidence            4433      11211111111112     23 45555556678999999987654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=3.7e-12  Score=105.27  Aligned_cols=192  Identities=9%  Similarity=-0.007  Sum_probs=128.1

Q ss_pred             CCCCcceEEEEEeCCCc----------------EEEEeCCCCcee--eEE---eccCCeeEEEEcCCCCcEEEEecC---
Q psy11351          2 ASGDPIKVLRVIGNDDH----------------VISHDMASGDPI--DFY---LHERPVYGLSVDPSQDAIFASACD---   57 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~--~~~---~~~~~v~~~~~~~~~~~~l~s~~~---   57 (224)
                      +.+++|+.|+.++.++.                |++|++.+++..  ..+   .|...+..+.|+|+| ++|+.++.   
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~  255 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGC  255 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccC
Confidence            34667888888888766                999999887632  233   245568899999999 66665543   


Q ss_pred             --CCEEEEEecCC------cc-cceeeccCCcCeEEEEEcCCCCCeEEEecC-C---CcEEEEecCCCc--eeeEeecCC
Q psy11351         58 --DGRVLLFDTRS------RE-EATELAVNSGPFHAVMFNPVEARLVATANS-K---DGIALYDTRKPK--EVLMQYGSC  122 (224)
Q Consensus        58 --d~~i~iwd~~~------~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d---g~v~i~d~~~~~--~~~~~~~~~  122 (224)
                        +..|.+||+.+      +. ....+..+...+.. .|+| ++..|+..+. +   +.|.+||+.++.  ....+..+.
T Consensus       256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence              67899999986      43 35556666665555 4777 5555544433 2   369999998764  234445444


Q ss_pred             C--ceeEEEEcCCCCeEeeeecCCC--cEEEECCCCCcceecc-cCCcccceeeeEEEEeCCCCeEE-EE---cCCCCeE
Q psy11351        123 E--SCMSIRFNKAGTQLLGLRRRLP--PVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYV-VS---GSDDFVL  193 (224)
Q Consensus       123 ~--~v~~~~~~~~~~~l~~~~~d~~--v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l-~s---~~~d~~v  193 (224)
                      .  .+..+.|++++.++++...++.  |++|++.+++.+..+. +.+.     +..+.++| ++..+ ++   ....+.+
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-----v~~~~~s~-d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS-----VVGYSGQK-KDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE-----EEEEECCT-TCSEEEEEEECSSCCCEE
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce-----EEEEecCC-CCCEEEEEEeCCCCCCEE
Confidence            3  6888999977778888877774  6667876777666653 3222     23356667 45443 33   2346899


Q ss_pred             EEEeCCCCC
Q psy11351        194 YMWRVPRDD  202 (224)
Q Consensus       194 ~iw~~~~~~  202 (224)
                      +.||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999998877

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=3.1e-11  Score=88.93  Aligned_cols=188  Identities=9%  Similarity=-0.020  Sum_probs=129.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~   78 (224)
                      +.+..+.++++...++.|..||.+ ++.....  .....+.++++.+++ .++++...++.|..||. +++... .....
T Consensus        63 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           63 TISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             EECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            445667777777768889999986 4432222  245678999999988 78888777899999998 554322 22233


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ...+..+++++ ++.++++...++.|..||. +++.... .......+..++++++|+..++...++.|.+||. +++..
T Consensus       140 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          140 GSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence            45689999999 7788887777889999998 5543322 2234456889999999987766666778999998 55533


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                       .+.......  ....+++.+ +++++++...++.|..||..
T Consensus       217 -~~~~~~~~~--~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          217 -EFKIPTPNA--RPHAITAGA-GIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             -EEECSSTTC--CEEEEEECS-TTCEEEEETTTTEEEEEETT
T ss_pred             -EEECCCCCC--CceeEEECC-CCCEEEeccCCceEEEECCC
Confidence             231111111  133466666 57777776678899999983

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=2.7e-11  Score=89.75  Aligned_cols=188  Identities=11%  Similarity=0.084  Sum_probs=123.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc----CCcC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV----NSGP   81 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~   81 (224)
                      .+.++++...++.|..||..+++. ..+.....+.+++++|++ +++++.  ++.|.+||..+++.......    ....
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG-~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~   99 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG-GYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNR   99 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS-SEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC-CEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCC
Confidence            456777877889999999988765 345567789999999998 655544  56899999987764322211    1235


Q ss_pred             eEEEEEcCCCCCeEEEecCC---------CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee-ecCCCcEEEEC
Q psy11351         82 FHAVMFNPVEARLVATANSK---------DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL-RRRLPPVLYNT  151 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~  151 (224)
                      ++.++++| +++++++....         ..-.+|.+..................++|+|+++.|+.+ +.++.|.+|++
T Consensus       100 ~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          100 FNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             EEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             CCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence            78999999 77777654221         223445444322333333334456889999999977654 45678999987


Q ss_pred             --CCCCcc--eec-c---cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        152 --RSSSPV--AQF-D---HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       152 --~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                        .++...  ..+ .   ..+.     ...+++.+ ++++.++...++.|..||..+++..
T Consensus       179 d~~~G~~~~~~~~~~~~~~~~~-----p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          179 DLQTGQISNRRSVYKLEKEEQI-----PDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             CTTTCCEEEEEEEEECCGGGCE-----EEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             cCCCCcccCcEEEEECCCCCCC-----CCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEE
Confidence              445432  111 1   1122     23356666 6888888777889999999888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=1.1e-11  Score=92.13  Aligned_cols=187  Identities=10%  Similarity=0.084  Sum_probs=124.4

Q ss_pred             CCCc-ceEEEEEeCCCcEEEEeCCCCceeeE-Ee-----ccCCeeEEEEcCCCCcEEEEecCC---------------CE
Q psy11351          3 SGDP-IKVLRVIGNDDHVISHDMASGDPIDF-YL-----HERPVYGLSVDPSQDAIFASACDD---------------GR   60 (224)
Q Consensus         3 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~l~s~~~d---------------~~   60 (224)
                      .+.. ++++++.. .+.|.+||.+ ++.... ..     ....+.++++++++ +++++...+               +.
T Consensus        78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCe
Confidence            3445 66555544 4479999998 766544 31     12458899999998 677776654               57


Q ss_pred             EEEEecCCcccceeeccCCcCeEEEEEc----CCCCC-eEEEecCCCcEEEEecC-CCce-----eeEeecCC-CceeEE
Q psy11351         61 VLLFDTRSREEATELAVNSGPFHAVMFN----PVEAR-LVATANSKDGIALYDTR-KPKE-----VLMQYGSC-ESCMSI  128 (224)
Q Consensus        61 i~iwd~~~~~~~~~~~~~~~~i~~~~~~----~~~~~-~l~~~~~dg~v~i~d~~-~~~~-----~~~~~~~~-~~v~~~  128 (224)
                      |..||.. ++.. .+..+......++++    | +++ ++++...++.|.+||+. +++.     ...+..+. ..+..+
T Consensus       155 l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          155 IYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEECTT-SCEE-EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             EEEECCC-CCEE-EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            7777765 4432 222333456889999    8 664 45555678899999986 3321     11122233 567889


Q ss_pred             EEcCCCCeEeeeecCCCcEEEECCCCCcceecc-cCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCCC
Q psy11351        129 RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       129 ~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~~  201 (224)
                      +++++|+++++...++.|.+||..+++.+..+. +...     ...++++| +++ ++++...++.|..|++...
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK-----PSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC-----EEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCC-----ceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence            999999888877778889999998777666553 2222     33466767 576 5666667789999998754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=5.6e-12  Score=93.81  Aligned_cols=194  Identities=11%  Similarity=0.036  Sum_probs=126.3

Q ss_pred             CCCCcceEEEE-------EeCCCcEEEEeCCCCceeeEEe-----ccCCeeEEEEcCC-CCcEEEEecCCCEEEEEecCC
Q psy11351          2 ASGDPIKVLRV-------IGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDPS-QDAIFASACDDGRVLLFDTRS   68 (224)
Q Consensus         2 a~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~   68 (224)
                      +.+..++++++       +..++.|.+||..+++......     +...+.+++++++ + +++++.. .+.|.+||.. 
T Consensus        24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-  100 (314)
T 1pjx_A           24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-  100 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-
T ss_pred             eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-
Confidence            34556777777       5778999999998887654433     5577999999999 6 6666554 4478899988 


Q ss_pred             ccccee-ecc----CCcCeEEEEEcCCCCCeEEEecCC---------------CcEEEEecCCCceeeEeecCCCceeEE
Q psy11351         69 REEATE-LAV----NSGPFHAVMFNPVEARLVATANSK---------------DGIALYDTRKPKEVLMQYGSCESCMSI  128 (224)
Q Consensus        69 ~~~~~~-~~~----~~~~i~~~~~~~~~~~~l~~~~~d---------------g~v~i~d~~~~~~~~~~~~~~~~v~~~  128 (224)
                      ++.... ...    ....+.++++++ +++++++...+               +.|..||.. ++ ...+..+......+
T Consensus       101 g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~~i  177 (314)
T 1pjx_A          101 GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVDTAFQFPNGI  177 (314)
T ss_dssp             SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEEEEESSEEEE
T ss_pred             CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEeccCCCCcceE
Confidence            654322 211    123578999999 77877776554               567777765 43 33333333456789


Q ss_pred             EEc----CCCCeEeee-ecCCCcEEEECC-CCCcc--eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        129 RFN----KAGTQLLGL-RRRLPPVLYNTR-SSSPV--AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       129 ~~~----~~~~~l~~~-~~d~~v~v~d~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +|+    |+++.++++ ..++.|.+||+. +++..  ..+ ....... .....+++.+ +++++++...++.|.+||..
T Consensus       178 ~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~-~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE-GGADGMDFDE-DNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS-CEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred             EEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC-CCCCceEECC-CCCEEEEEcCCCEEEEEcCC
Confidence            999    999766555 456789999976 34311  111 1111100 1123366777 68888887778899999988


Q ss_pred             CCCe
Q psy11351        200 RDDI  203 (224)
Q Consensus       200 ~~~~  203 (224)
                      +++.
T Consensus       256 ~g~~  259 (314)
T 1pjx_A          256 GGQP  259 (314)
T ss_dssp             CBSC
T ss_pred             CCcE
Confidence            6654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=9.4e-11  Score=86.41  Aligned_cols=191  Identities=9%  Similarity=-0.050  Sum_probs=130.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc-eeeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA-TELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~   78 (224)
                      +.++.++++++...++.|.+||.. ++.....  .....+.++++.+++ +++++...++.|..+|.. ++.. ..+...
T Consensus        26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~  102 (300)
T 2qc5_A           26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFTEYPLPQP  102 (300)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeEEecCCCC
Confidence            445667777777778999999988 6554422  234678999999998 777777778899999987 5432 122223


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ...+..+++.+ +++++++...++.|..+|.. ++.... .......+..++++++++..++...++.|..+|. +++..
T Consensus       103 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  179 (300)
T 2qc5_A          103 DSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE  179 (300)
T ss_dssp             TCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence            45789999998 78888887778899999987 443322 2224567899999999996666555677999988 44433


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      . +.......  ....+++.+ ++.++++....+.|..|+. +++.
T Consensus       180 ~-~~~~~~~~--~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          180 E-YPLPTNAA--APVGITSGN-DGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             E-EECSSTTC--CEEEEEECT-TSSEEEEETTTTEEEEECT-TCCE
T ss_pred             E-eeCCCCCC--CcceEEECC-CCCEEEEccCCCEEEEEcC-CCcE
Confidence            2 32111111  123456666 6777777777788999998 4443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=1.5e-10  Score=85.30  Aligned_cols=190  Identities=8%  Similarity=-0.052  Sum_probs=128.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~   78 (224)
                      +.+..++++++...++.|..+|.. ++.....  .....+.++++.+++ +++++...++.|..+|.. ++... .+...
T Consensus        68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A           68 IVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             EECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence            345667777776667889999988 6554322  234678999999988 788877778899999987 54332 22223


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      ...+..+++.+ +++++++...++.|..||. +++.... .......+..++++++|+..++....+.|.+||. +++..
T Consensus       145 ~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  221 (300)
T 2qc5_A          145 GSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS  221 (300)
T ss_dssp             TCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence            45689999999 7777777767888999998 4433321 1134456889999999877666656667999998 44433


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .... .....  ....+++.+ +++++++...++.|..|+. +++
T Consensus       222 ~~~~-~~~~~--~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          222 EYDI-PTPNA--RPHAITAGK-NSEIWFTEWGANQIGRITN-DNT  261 (300)
T ss_dssp             EEEC-SSTTC--CEEEEEECS-TTCEEEEETTTTEEEEECT-TSC
T ss_pred             EEEC-CCCCC--CceEEEECC-CCCEEEeccCCCeEEEECC-CCc
Confidence            2211 11111  123466666 5777777767789999998 443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=3.3e-12  Score=97.44  Aligned_cols=146  Identities=10%  Similarity=0.064  Sum_probs=110.2

Q ss_pred             CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---------cc-eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEE
Q psy11351         38 PVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---------EA-TELAVNSGPFHAVMFNPVEARLVATANSKDGIALY  107 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~  107 (224)
                      .++.+++++.. .++++|+.+ .+.+|++...+         .. .....+.. |+.++|   ++.+|+++ .++.|++|
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            68999999998 789999887 55669876443         11 11224556 999999   56788888 88999999


Q ss_pred             ecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEc
Q psy11351        108 DTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSG  187 (224)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  187 (224)
                      |+++.........++..+.++.+.+.  .+++++.||.+.+||+.++....   +..     .+.+++|+| +|  ++.|
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~-----~Vs~v~WSp-kG--~~vg  178 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQ-----NVTSFDVTN-SQ--LAVL  178 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEE-----SEEEEEECS-SE--EEEE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccC-----CceEEEEcC-Cc--eEEE
Confidence            99887665556667778888877654  38888999999999998776542   122     355689998 56  6778


Q ss_pred             CCCCeEEEEeCCCCCe
Q psy11351        188 SDDFVLYMWRVPRDDI  203 (224)
Q Consensus       188 ~~d~~v~iw~~~~~~~  203 (224)
                      ..||.+++|+...++.
T Consensus       179 ~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             ETTSCEEEEEEETTEE
T ss_pred             EcCCcEEEEcCCCccc
Confidence            8899999998877663

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=1.5e-11  Score=102.14  Aligned_cols=188  Identities=18%  Similarity=0.096  Sum_probs=120.6

Q ss_pred             CCCCcceEEEEEeCC-----CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC--------------EEE
Q psy11351          2 ASGDPIKVLRVIGND-----DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG--------------RVL   62 (224)
Q Consensus         2 a~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--------------~i~   62 (224)
                      +.+++|++|+.++.+     .+|++||+.+++.+....+...+..++|+|+ ..++++ +.++              .|+
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~  246 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVW  246 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEE-ECCCC--------CCCCCEEE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEE-EecCcccccccccCCCCCEEE
Confidence            346778888877654     4699999999987654323333468899999 444444 4443              489


Q ss_pred             EEecCCcccc--eeec--cCCcCeEEEEEcCCCCCeEEEecCC-----CcEEEEecCCCc-e-eeEeecCCCceeEEEEc
Q psy11351         63 LFDTRSREEA--TELA--VNSGPFHAVMFNPVEARLVATANSK-----DGIALYDTRKPK-E-VLMQYGSCESCMSIRFN  131 (224)
Q Consensus        63 iwd~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~-~-~~~~~~~~~~v~~~~~~  131 (224)
                      +|++.+++..  ..+.  .+...+..+.|+| ++++++..+.+     ..|.+||+.++. . ...+..+...+... ++
T Consensus       247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~  324 (741)
T 1yr2_A          247 LHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VD  324 (741)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EE
T ss_pred             EEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-Ee
Confidence            9998776532  2222  2333588999999 88777766543     379999998762 2 44555555445444 34


Q ss_pred             CCCCeEeeeecC----CCcEEEECCCCC-cceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        132 KAGTQLLGLRRR----LPPVLYNTRSSS-PVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       132 ~~~~~l~~~~~d----~~v~v~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      |+|+.|+..+.+    +.|.+||+.++. ....+ .+...+    +..+.++  ++.++++...|+..++|.+.
T Consensus       325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~----l~~~~~~--~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN----LESVGIA--GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE----EEEEEEE--BTEEEEEEEETTEEEEEEEE
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe----EEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            889988877654    348999988752 22233 322221    2234454  56788888889877777554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.43  E-value=5.3e-11  Score=92.12  Aligned_cols=194  Identities=10%  Similarity=0.059  Sum_probs=127.1

Q ss_pred             CCCCCcceEEEEEeCCC--cEEEEeCCCCceeeEE----e-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          1 MASGDPIKVLRVIGNDD--HVISHDMASGDPIDFY----L-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      ++.+..++.|+++..++  .|.+++...+......    . ....+.+++++|++..+++ +..++.|+.||..++....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~  254 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTL  254 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEE
Confidence            34566777888887766  7888888766543333    2 4567889999995424444 6778999999998765322


Q ss_pred             e----eccCCcCe--EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC---------------CCceeEEEEcC
Q psy11351         74 E----LAVNSGPF--HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS---------------CESCMSIRFNK  132 (224)
Q Consensus        74 ~----~~~~~~~i--~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---------------~~~v~~~~~~~  132 (224)
                      .    ..++...-  ..++|+|.++.++++-..++.|+.||....  ...+.++               -.....++++|
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence            1    12222222  389999955777777778889999997643  2233222               13478899999


Q ss_pred             CCCeEeeee-cCCCcEEEECCCCCcceecccC---Cccc-------ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        133 AGTQLLGLR-RRLPPVLYNTRSSSPVAQFDHE---GYYN-------SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       133 ~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      +|+++++-. .++.|+.|++.++.......+.   +...       --....+++.+ ++.++++-..+++|+.+++
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence            999777766 7888999998777543322221   0000       01133466777 4788888888888887764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=1.3e-11  Score=95.38  Aligned_cols=107  Identities=10%  Similarity=0.012  Sum_probs=77.2

Q ss_pred             cceEEEEEeCC----CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEecCCccc
Q psy11351          6 PIKVLRVIGND----DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC----------DDGRVLLFDTRSREE   71 (224)
Q Consensus         6 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~   71 (224)
                      +...+++...+    ++|.++|..+++.+..+.-...- .+.++|++ ++++.+.          .++.|.++|..+++.
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            33444554444    79999999999999888433334 89999999 5555554          467999999999988


Q ss_pred             ceeeccC-------CcCeEEEEEcCCCCCeEEEecC--CCcEEEEecCCCcee
Q psy11351         72 ATELAVN-------SGPFHAVMFNPVEARLVATANS--KDGIALYDTRKPKEV  115 (224)
Q Consensus        72 ~~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~  115 (224)
                      +..+...       ...-..+.|+| ++++++.+..  ++.|.+.|+.+.+..
T Consensus       162 v~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             EEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEE
Confidence            7776431       12345788999 7777777653  578999999887544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.41  E-value=8.4e-11  Score=85.03  Aligned_cols=193  Identities=7%  Similarity=0.034  Sum_probs=131.3

Q ss_pred             CCCcceEEEEEeC--CCcEEEEeCCCCceeeEEeccC--CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          3 SGDPIKVLRVIGN--DDHVISHDMASGDPIDFYLHER--PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         3 ~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +++++.++++.+.  ++.|+++|+.+++.+..+.-..  ....+++.  +..+.++.-.++.+.++|..+.+.+..+...
T Consensus        28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g  105 (266)
T 2iwa_A           28 YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ  105 (266)
T ss_dssp             ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC
T ss_pred             EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC
Confidence            3444666666553  5799999999999888763222  23345555  4367777778899999999999888877533


Q ss_pred             -CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CC---CceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         79 -SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SC---ESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        79 -~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                       ...   ..+++ ++..++++..++.|.++|..+.+....+.-  ..   .....+.|. +|...+....++.|.+.|+.
T Consensus       106 ~~~g---~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          106 MKDG---WGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             SSSC---CEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             CCCe---EEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence             222   23445 444444555688999999998877666552  11   235678888 66544444467889999999


Q ss_pred             CCCcceecccCCc---------ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        153 SSSPVAQFDHEGY---------YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      +++.+..+...+.         ........++|+|....+++++...+.|++.++...+
T Consensus       181 tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          181 DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            9998888743211         1112345578888666788999999999999887653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.40  E-value=1.5e-10  Score=88.08  Aligned_cols=192  Identities=10%  Similarity=0.001  Sum_probs=123.5

Q ss_pred             CCcceEEEEEeC-----CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEecCC
Q psy11351          4 GDPIKVLRVIGN-----DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC----------DDGRVLLFDTRS   68 (224)
Q Consensus         4 ~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~   68 (224)
                      ..+++.+.....     ++.|.+.|..+++.+..+....... +.++|++ ++++.+.          .++.|.+||..+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCC
Confidence            344555555544     6899999999999988884333334 9999999 5555543          367899999999


Q ss_pred             cccceeeccCC-------cCeEEEEEcCCCCCeEEEecC--CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEee
Q psy11351         69 REEATELAVNS-------GPFHAVMFNPVEARLVATANS--KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        69 ~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      .+.+..+....       ..-..+.|+| ++++++.+..  ++.|.++|+.+.+....+.-..  . ...+....+.+++
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~  194 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM  194 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence            98877764321       1345789999 7787777653  6889999999998776664321  1 2223333456667


Q ss_pred             eecCCCcEEEECCC-CCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        140 LRRRLPPVLYNTRS-SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       140 ~~~d~~v~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .+.||.+.+.++.+ ++...... .........+....|.+.++++++. +.+|.|++.|+.++.
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v-s~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTGKIHQIDLSSGD  258 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE-BTTSEEEEEECTTSS
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEE-eCCCEEEEEECCCCc
Confidence            77788888888865 44422111 1111111112223454336766554 447899999997765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=4.2e-11  Score=90.60  Aligned_cols=194  Identities=8%  Similarity=0.080  Sum_probs=123.0

Q ss_pred             CCCCcceEEEEEe--CCCcEEEEeCCCCceeeE-------EeccCCeeEEEEcCCCCcEEEEecC-----CCEEEEEecC
Q psy11351          2 ASGDPIKVLRVIG--NDDHVISHDMASGDPIDF-------YLHERPVYGLSVDPSQDAIFASACD-----DGRVLLFDTR   67 (224)
Q Consensus         2 a~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~   67 (224)
                      +++..|+++++..  .++.++||.+.+++....       .++-..+..+++++++ +++++-..     ++.|.+||+.
T Consensus        23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~  101 (343)
T 2qe8_A           23 TLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTL  101 (343)
T ss_dssp             EECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETT
T ss_pred             EECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECC
Confidence            5666788888864  234355555545543311       0245689999999998 66665433     5799999999


Q ss_pred             Ccccceeecc------CCcCeEEEEEcCCCCCeEEEec---CCCcEEEEecCCCceeeEeecC-----------------
Q psy11351         68 SREEATELAV------NSGPFHAVMFNPVEARLVATAN---SKDGIALYDTRKPKEVLMQYGS-----------------  121 (224)
Q Consensus        68 ~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~-----------------  121 (224)
                      +++.+..+..      +......+++++.++..+++..   .++.|.+||+.+++....+..|                 
T Consensus       102 tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~  181 (343)
T 2qe8_A          102 NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPV  181 (343)
T ss_dssp             TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEEC
T ss_pred             CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEE
Confidence            8886655532      1234689999983455556655   6788999999876543333211                 


Q ss_pred             ------------CCceeEEEEcCCCCeEeeeecCCCcEEEECCC-----CCc--------ceecccCCcccceeeeEEEE
Q psy11351        122 ------------CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS-----SSP--------VAQFDHEGYYNSCTMKSCCF  176 (224)
Q Consensus       122 ------------~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~  176 (224)
                                  ...+..++|+|+|+.|+.+..++. ++|.+..     +..        +....+.+....     +++
T Consensus       182 ~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg-----ia~  255 (343)
T 2qe8_A          182 QIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG-----ISI  255 (343)
T ss_dssp             BEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC-----EEE
T ss_pred             EeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCce-----EEE
Confidence                        123578999999998888876653 4554421     110        011112222233     556


Q ss_pred             eCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        177 AGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       177 ~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+ ++.++++...++.|.+||..+++.
T Consensus       256 d~-~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          256 DK-DHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             CT-TCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             CC-CCCEEEEccCCCeEEEEECCCCCE
Confidence            66 689999988899999999855543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.35  E-value=8.9e-11  Score=86.97  Aligned_cols=178  Identities=8%  Similarity=0.045  Sum_probs=111.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEec-----cCCeeEEEEcCCCCcEEEEecC---------CCEEEEEecC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLH-----ERPVYGLSVDPSQDAIFASACD---------DGRVLLFDTR   67 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~   67 (224)
                      +.+.+++++++ . ++.|.+||.++++.......     ...+++++++|+| +++++...         ...-.+|.+.
T Consensus        60 ~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d  136 (297)
T 3g4e_A           60 ALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLF  136 (297)
T ss_dssp             EEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred             EECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEE
Confidence            44566775554 3 56899999988876544422     2358899999998 66665421         1223444443


Q ss_pred             CcccceeeccCCcCeEEEEEcCCCCC-eEEEecCCCcEEEEecC--CCcee--eEe---ecCCCceeEEEEcCCCCeEee
Q psy11351         68 SREEATELAVNSGPFHAVMFNPVEAR-LVATANSKDGIALYDTR--KPKEV--LMQ---YGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        68 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~--~~~~~--~~~---~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      .......+.......+.++|+| +++ ++++.+.++.|.+||+.  ++...  ..+   .........++++++|++.++
T Consensus       137 ~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          137 PDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             TTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             CCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            3222222333334568999999 665 45666678899999973  44321  111   123456789999999987777


Q ss_pred             eecCCCcEEEECCCCCcceecccC-CcccceeeeEEEEe-CCCCeEEEEcC
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQFDHE-GYYNSCTMKSCCFA-GTQDEYVVSGS  188 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~s~~  188 (224)
                      ....+.|..||..+++.+..+... ..     ...++|. |+...++++..
T Consensus       216 ~~~~~~v~~~d~~tG~~~~~i~~p~~~-----~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTGKRLQTVKLPVDK-----TTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EETTTEEEEECTTTCCEEEEEECSSSB-----EEEEEEESGGGCEEEEEEB
T ss_pred             EcCCCEEEEEcCCCceEEEEEECCCCC-----ceEEEEeCCCCCEEEEEcC
Confidence            777778999999989888777432 23     3347776 53234445443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.35  E-value=2.5e-10  Score=93.76  Aligned_cols=181  Identities=10%  Similarity=0.095  Sum_probs=128.0

Q ss_pred             CCcEEEEeCCCCceeeEEeccC---------------------------------CeeEEEEcCCCCcEEEEecCCC---
Q psy11351         16 DDHVISHDMASGDPIDFYLHER---------------------------------PVYGLSVDPSQDAIFASACDDG---   59 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~---------------------------------~v~~~~~~~~~~~~l~s~~~d~---   59 (224)
                      ++.|+.+|..+++.+..+....                                 ....++++|++ .+++.+..++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccc
Confidence            7899999999999887662111                                 11357788887 6777776664   


Q ss_pred             ----------------EEEEEecCCcccceeecc--CC-------cCeEEEEEcCCCC---CeEEEecCCCcEEEEecCC
Q psy11351         60 ----------------RVLLFDTRSREEATELAV--NS-------GPFHAVMFNPVEA---RLVATANSKDGIALYDTRK  111 (224)
Q Consensus        60 ----------------~i~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~~l~~~~~dg~v~i~d~~~  111 (224)
                                      .|..+|.++++.+..++.  |.       .....+.... ++   ..++.++.+|.++++|.++
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~t  346 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTN  346 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCC
Confidence                            599999999998777653  21       1122233333 44   6888999999999999999


Q ss_pred             CceeeEeecCC-----------Cce------------------------eEEEEcCCCCeEeeeecC-------------
Q psy11351        112 PKEVLMQYGSC-----------ESC------------------------MSIRFNKAGTQLLGLRRR-------------  143 (224)
Q Consensus       112 ~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l~~~~~d-------------  143 (224)
                      ++.+.......           .++                        ..++|+|++..+++...+             
T Consensus       347 G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~  426 (677)
T 1kb0_A          347 GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEF  426 (677)
T ss_dssp             CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCT
T ss_pred             CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccc
Confidence            98765543110           001                        156889988888775431             


Q ss_pred             ------------------------------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeE
Q psy11351        144 ------------------------------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVL  193 (224)
Q Consensus       144 ------------------------------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v  193 (224)
                                                    +.|..||+.+++.+..+.+........+..      .+.+++.++.|+.+
T Consensus       427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~------~g~~v~~g~~dg~l  500 (677)
T 1kb0_A          427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT------AGNVVFQGTADGRL  500 (677)
T ss_dssp             TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEECTTSEE
T ss_pred             ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe------CCCEEEEECCCCcE
Confidence                                          679999999999888876555444444443      67788888999999


Q ss_pred             EEEeCCCCCeE
Q psy11351        194 YMWRVPRDDIY  204 (224)
Q Consensus       194 ~iw~~~~~~~~  204 (224)
                      ++||..+++..
T Consensus       501 ~a~D~~tG~~l  511 (677)
T 1kb0_A          501 VAYHAATGEKL  511 (677)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCcee
Confidence            99999999885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=7e-10  Score=83.26  Aligned_cols=185  Identities=12%  Similarity=0.019  Sum_probs=118.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc----CCcCe
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV----NSGPF   82 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~i   82 (224)
                      +.++++...++.|..||.++++.. .+.....+.++.|+|++ +++++. .+ .|.+||..+++.......    ....+
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~  136 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRS  136 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCC
Confidence            567777778899999999887653 34456789999999998 666654 34 599999887764322111    12358


Q ss_pred             EEEEEcCCCCCeEEEecC------CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECC--C
Q psy11351         83 HAVMFNPVEARLVATANS------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTR--S  153 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~--~  153 (224)
                      .+++++| +++++++...      .+.|..+|  ++ ....+.........++|+|+++.++.+. .++.|.+|++.  +
T Consensus       137 ~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          137 NDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             EEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             CCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc
Confidence            8999999 7777665532      24566666  34 3333333334567899999998776554 46789999986  5


Q ss_pred             C-Ccc--eec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        154 S-SPV--AQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       154 ~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      + +..  ..+ .......  ....+++.+ ++.+.++...++.|..|+. +++.
T Consensus       213 Gl~~~~~~~~~~~~~~~~--~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~  262 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKG--GMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNH  262 (326)
T ss_dssp             CCBSSCCEEEEECTTSSS--EEEEEEECT-TSCEEEEEETTTEEEEECT-TCCE
T ss_pred             CCcccCceEEEECCCCCC--CCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCE
Confidence            5 321  112 1110000  122356666 5777776666788999998 4544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.34  E-value=4.7e-10  Score=92.32  Aligned_cols=181  Identities=9%  Similarity=0.077  Sum_probs=125.4

Q ss_pred             CCcEEEEeCCCCceeeEEec---c-----------------------------CCeeEEEEcCCCCcEEEEecCCCE---
Q psy11351         16 DDHVISHDMASGDPIDFYLH---E-----------------------------RPVYGLSVDPSQDAIFASACDDGR---   60 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~---~-----------------------------~~v~~~~~~~~~~~~l~s~~~d~~---   60 (224)
                      +|.|+.||.++|+.+..+..   .                             .....++++|+. .+++.+..++.   
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWD  260 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccc
Confidence            78999999999998766521   0                             011257888887 68888887764   


Q ss_pred             ----------------EEEEecCCcccceeecc--CC-------cCeEEEEEcCCCCC---eEEEecCCCcEEEEecCCC
Q psy11351         61 ----------------VLLFDTRSREEATELAV--NS-------GPFHAVMFNPVEAR---LVATANSKDGIALYDTRKP  112 (224)
Q Consensus        61 ----------------i~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~~---~l~~~~~dg~v~i~d~~~~  112 (224)
                                      |..+|.++++.+..++.  |.       .+........ ++.   .++.++.+|.++++|.+++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCC
Confidence                            99999999998877653  21       1122222222 333   7888999999999999999


Q ss_pred             ceeeEeecCC---------------------------------------CceeEEEEcCCCCeEeeeec-----------
Q psy11351        113 KEVLMQYGSC---------------------------------------ESCMSIRFNKAGTQLLGLRR-----------  142 (224)
Q Consensus       113 ~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~l~~~~~-----------  142 (224)
                      +.+.......                                       ..-..++|+|+...+++...           
T Consensus       340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  419 (689)
T 1yiq_A          340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE  419 (689)
T ss_dssp             CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred             CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence            7753321100                                       00123688888777776422           


Q ss_pred             ----------------------------------CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        143 ----------------------------------RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       143 ----------------------------------d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                                                        ++.|+.||+.+++.+..+.+........+..      .+.+++.|+
T Consensus       420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agglvf~gt  493 (689)
T 1yiq_A          420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST------AGNLVFEGS  493 (689)
T ss_dssp             CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEEC
T ss_pred             cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE------CCCEEEEEC
Confidence                                              3669999999999888875544444333333      677888899


Q ss_pred             CCCeEEEEeCCCCCeE
Q psy11351        189 DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       189 ~d~~v~iw~~~~~~~~  204 (224)
                      .|+.++.||.++|++.
T Consensus       494 ~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          494 ADGRVIAYAADTGEKL  509 (689)
T ss_dssp             TTSEEEEEETTTCCEE
T ss_pred             CCCcEEEEECCCCccc
Confidence            9999999999999884

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.33  E-value=4e-10  Score=80.76  Aligned_cols=179  Identities=9%  Similarity=0.128  Sum_probs=120.5

Q ss_pred             cceEEEEEeCCC--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVLRVIGNDD--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      ++.++.+.+.+|  .|+.+|+++++.+....-..........+.+..+......++.+.+||..+.+.+.++...... .
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~  130 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-W  130 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-C
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-e
Confidence            356777777776  8999999999998877544555443333344456666777899999999999988888643221 2


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CC---CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SC---ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      .++  + ++..|+.+..++.|.++|..+.+....+.-  ..   ..+..+.|. +|+..+..-.++.|.+.|..+++.+.
T Consensus       131 glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          131 GLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             CEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred             EEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence            333  4 445555555578899999998877666543  22   234457776 66655545467889999999999888


Q ss_pred             ecccCCcc--------cceeeeEEEEeCCCCeEEEEcCC
Q psy11351        159 QFDHEGYY--------NSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       159 ~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      .+...+-.        ..-...-++|+|....+++||-.
T Consensus       207 ~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          207 IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            77432111        11234568888866667777643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=6.9e-11  Score=97.47  Aligned_cols=189  Identities=13%  Similarity=0.139  Sum_probs=116.8

Q ss_pred             CCCCcceEEEEE-----eCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC-------------EEEE
Q psy11351          2 ASGDPIKVLRVI-----GNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG-------------RVLL   63 (224)
Q Consensus         2 a~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------------~i~i   63 (224)
                      +.+++|++||-+     +.+.+|++||+.+++.+...........++|+ ++ +.|+.++.+.             .|++
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~  212 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYF  212 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEE
Confidence            356778877743     33357999999999876543222223578899 88 6666666553             4999


Q ss_pred             EecCCccc--ceee--cc-CCcCeEEEEEcCCCCCeEEEe-c---CCCcEEEEecCCCc-eeeEeecCCCceeEEEEcCC
Q psy11351         64 FDTRSREE--ATEL--AV-NSGPFHAVMFNPVEARLVATA-N---SKDGIALYDTRKPK-EVLMQYGSCESCMSIRFNKA  133 (224)
Q Consensus        64 wd~~~~~~--~~~~--~~-~~~~i~~~~~~~~~~~~l~~~-~---~dg~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~  133 (224)
                      |++.++..  ...+  .. +......+.|+| ++++++.. +   ....+.++|+.++. ....+..+....... ++++
T Consensus       213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~  290 (693)
T 3iuj_A          213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNK  290 (693)
T ss_dssp             EETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEE
T ss_pred             EECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eecc
Confidence            99987653  2222  23 344578899999 77766433 2   23579999998764 345555555555554 6677


Q ss_pred             CCeEeeeec-C---CCcEEEECCCCCc--ceec-ccCCcccceeeeEEEEeCCCCeEEEEc-CCCC--eEEEEeCCCCC
Q psy11351        134 GTQLLGLRR-R---LPPVLYNTRSSSP--VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSG-SDDF--VLYMWRVPRDD  202 (224)
Q Consensus       134 ~~~l~~~~~-d---~~v~v~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~--~v~iw~~~~~~  202 (224)
                      |..|+..+. +   +.|..+|+.++..  ...+ .+...+.       .|++ +++.|+.. ..++  .|++|++..+.
T Consensus       291 g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-------~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          291 GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-------TVHS-GSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-------EEEE-ETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-------EEEE-ECCEEEEEEEECCeeEEEEEECCCCe
Confidence            666555443 2   5688889987654  2333 3433321       4444 45555544 4454  78899987554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.30  E-value=4.5e-10  Score=93.32  Aligned_cols=190  Identities=9%  Similarity=-0.034  Sum_probs=117.9

Q ss_pred             CCCcceEEEEEeCCCc--------------EEEEeCCCCce--eeEEe---ccCCeeEEEEcCCCCcEEEEecCC-----
Q psy11351          3 SGDPIKVLRVIGNDDH--------------VISHDMASGDP--IDFYL---HERPVYGLSVDPSQDAIFASACDD-----   58 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-----   58 (224)
                      .+++ +.|+.++.|+.              |++|++.+++.  ...+.   +...+..+.|+|+| ++|+..+.+     
T Consensus       216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~  293 (741)
T 1yr2_A          216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPV  293 (741)
T ss_dssp             ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSC
T ss_pred             EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCc
Confidence            3455 67777766554              89999987763  23332   33358899999999 666655543     


Q ss_pred             CEEEEEecCCc--ccceeeccCCcCeEEEEEcCCCCCeEEEecC----CCcEEEEecCCC-ceeeEee-cCCCceeEEEE
Q psy11351         59 GRVLLFDTRSR--EEATELAVNSGPFHAVMFNPVEARLVATANS----KDGIALYDTRKP-KEVLMQY-GSCESCMSIRF  130 (224)
Q Consensus        59 ~~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~i~d~~~~-~~~~~~~-~~~~~v~~~~~  130 (224)
                      ..|.+||+.++  +....+..+........+ | ++..|+..+.    ++.|.+||+.++ .....+. .+...+..+.+
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~  371 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI  371 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence            48999999876  314555555544555433 6 5566655544    345999999875 2333443 34455667777


Q ss_pred             cCCCCeEeeeecCCCcEEEECC-CCCcceeccc--CCcccceeeeEEEEeCCCCeEEE----EcCCCCeEEEEeCCCCCe
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNTR-SSSPVAQFDH--EGYYNSCTMKSCCFAGTQDEYVV----SGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~----s~~~d~~v~iw~~~~~~~  203 (224)
                      + ++..+++...|+..++|.+. +++....+..  .+.+     ..+.++| +++.++    +....+.|++||+.+++.
T Consensus       372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v-----~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA-----SGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE-----EEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE-----EEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7 55677777788876666543 3444444432  2322     3355666 455444    334568999999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.30  E-value=5.5e-10  Score=84.92  Aligned_cols=190  Identities=9%  Similarity=-0.063  Sum_probs=126.7

Q ss_pred             cceEEEEEeCCC----cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEecCCccc
Q psy11351          6 PIKVLRVIGNDD----HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC----------DDGRVLLFDTRSREE   71 (224)
Q Consensus         6 ~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~   71 (224)
                      +...+++...++    +|.++|..+++.+..+.-...- .+.++|++ +.++.+.          .++.|.+||..+++.
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            345666666566    8889999999999888322222 79999999 5555553          478999999999998


Q ss_pred             ceeeccCC-------cCeEEEEEcCCCCCeEEEecC--CCcEEE--EecCCCcee-------------------------
Q psy11351         72 ATELAVNS-------GPFHAVMFNPVEARLVATANS--KDGIAL--YDTRKPKEV-------------------------  115 (224)
Q Consensus        72 ~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~~--dg~v~i--~d~~~~~~~-------------------------  115 (224)
                      +..+....       ..-..++++| ++++++.+..  +..+.+  +|+.+-..+                         
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            88875431       2345789999 7777777654  356777  777430000                         


Q ss_pred             ---------------e-------------------------------Eee--cCC---------------------Ccee
Q psy11351        116 ---------------L-------------------------------MQY--GSC---------------------ESCM  126 (224)
Q Consensus       116 ---------------~-------------------------------~~~--~~~---------------------~~v~  126 (224)
                                     .                               .+.  ...                     ....
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  267 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence                           0                               000  000                     0001


Q ss_pred             EEEEcCCCCeEeeeec---------CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCe-EEEEcC-CCCeEEE
Q psy11351        127 SIRFNKAGTQLLGLRR---------RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVSGS-DDFVLYM  195 (224)
Q Consensus       127 ~~~~~~~~~~l~~~~~---------d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~d~~v~i  195 (224)
                      .++++|+++.++++..         ++.+.++|+.+.+.+..+........     +.|+| +++ ++++.. .++.|.+
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~g-----i~~s~-Dg~~l~va~~~~~~~VsV  341 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDA-----IIAAQ-DGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECE-----EEECC-SSSCEEEEEETTTTEEEE
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcce-----EEECC-CCCEEEEEccCCCCeEEE
Confidence            1678889888876543         23466999999988888743333343     56666 565 667776 5999999


Q ss_pred             EeCCCCCeE
Q psy11351        196 WRVPRDDIY  204 (224)
Q Consensus       196 w~~~~~~~~  204 (224)
                      +|+.+++..
T Consensus       342 ID~~t~kvv  350 (368)
T 1mda_H          342 YDAASDQDQ  350 (368)
T ss_dssp             EESSSCEEE
T ss_pred             EECCCCcEE
Confidence            999999876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=6e-10  Score=82.80  Aligned_cols=185  Identities=9%  Similarity=0.039  Sum_probs=118.2

Q ss_pred             CCcce-EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec---cC-
Q psy11351          4 GDPIK-VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA---VN-   78 (224)
Q Consensus         4 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~-   78 (224)
                      ...++ ++++...++.|..|+. +++......+...+..++++++| +++++...++.|.+|+.. ++......   .. 
T Consensus        53 ~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~  129 (305)
T 3dr2_A           53 WEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR  129 (305)
T ss_dssp             EGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred             eCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence            34455 6777778899999998 45543333566789999999998 677776667899999975 54221111   11 


Q ss_pred             CcCeEEEEEcCCCCCeEEE----ecC-------------CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         79 SGPFHAVMFNPVEARLVAT----ANS-------------KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~----~~~-------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      ...+..++++| +++++++    |..             .+.|..||..+++.... . .......++|+|+++.|+.+.
T Consensus       130 ~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~-~~~~p~gl~~spdg~~lyv~~  206 (305)
T 3dr2_A          130 LNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A-DLDHPNGLAFSPDEQTLYVSQ  206 (305)
T ss_dssp             CSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E-EESSEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e-cCCCCcceEEcCCCCEEEEEe
Confidence            12467899999 8888886    432             25677888765543322 2 334567899999999888776


Q ss_pred             cC------CCcEEEECCCCCcc--eec-c-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        142 RR------LPPVLYNTRSSSPV--AQF-D-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       142 ~d------~~v~v~d~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..      +.|++|++..+...  ..+ . ..+....     +++.+ ++++.++ +.+ .|.+|+.. ++.
T Consensus       207 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg-----i~~d~-~G~lwv~-~~~-gv~~~~~~-g~~  269 (305)
T 3dr2_A          207 TPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG-----FCVDR-GGWLWSS-SGT-GVCVFDSD-GQL  269 (305)
T ss_dssp             CCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS-----EEECT-TSCEEEC-CSS-EEEEECTT-SCE
T ss_pred             cCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe-----EEECC-CCCEEEe-cCC-cEEEECCC-CCE
Confidence            54      67999998754311  111 1 1222233     44555 6775444 444 49999984 443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.27  E-value=1e-09  Score=78.73  Aligned_cols=175  Identities=7%  Similarity=0.074  Sum_probs=121.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeE--EEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYG--LSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      .+.++.+.+.+|.|+++|+++++.+... -......  +++.  +..+......++.+.+||..+.+.+.++...... .
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-w  139 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-W  139 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-C
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-e
Confidence            3567888889999999999999988776 4445444  5554  4367777778999999999999988888643222 3


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CC---CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SC---ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      .++  + ++..|+.+..++.|.++|..+.+....+.-  +.   ..+..+.|. +|+..+..-.++.|.+.|..+++.+.
T Consensus       140 GLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          140 GLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             CEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred             EEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence            444  3 445566656688999999999877666552  22   234567776 66555444467789999999999888


Q ss_pred             ecccCC---------cccceeeeEEEEeCCCCeEEEEcC
Q psy11351        159 QFDHEG---------YYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       159 ~~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      .+...+         .-..-...-++|.|....+++||-
T Consensus       216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            774221         001123556888886677777764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.26  E-value=5.2e-10  Score=85.14  Aligned_cols=193  Identities=12%  Similarity=0.082  Sum_probs=126.3

Q ss_pred             CCCCcceEEEEEeC--CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-ccccee----
Q psy11351          2 ASGDPIKVLRVIGN--DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-REEATE----   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~----   74 (224)
                      +++.+|+++..+..  ++.|.++|+.+++.+..+.-.+.   ..+.|.+...+++.+.||++.+.++.+ ++....    
T Consensus       143 a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~  219 (386)
T 3sjl_D          143 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  219 (386)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence            56778888887764  68999999999999888743331   223355546777888899999999876 443221    


Q ss_pred             eccCCcCeE-EEEEcCCCCCeEEEecCCCcEEEEecCCCce--eeEee--c--------CCCceeEEEEcCCCCeEeeee
Q psy11351         75 LAVNSGPFH-AVMFNPVEARLVATANSKDGIALYDTRKPKE--VLMQY--G--------SCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        75 ~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~--~--------~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      +.....++. ...|.+.++++++ .+.+|.|.+.|+.....  ...+.  .        .......++++++++.+++..
T Consensus       220 ~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~  298 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV  298 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             eccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence            111112222 2355432665555 44579999999976532  11111  0        122334578899999888864


Q ss_pred             c----------CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCe-EEEE-cCCCCeEEEEeCCCCCeE
Q psy11351        142 R----------RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVS-GSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       142 ~----------d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s-~~~d~~v~iw~~~~~~~~  204 (224)
                      .          .+.|.++|+.+++.+..+........     +.+++ +++ +|++ ...++.|.++|..+++..
T Consensus       299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~-----lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDS-----INVSQ-DEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECE-----EEECS-SSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCCCcce-----EEECC-CCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            3          24699999999999988854444444     66666 554 5444 566899999999999876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.25  E-value=3.8e-08  Score=71.56  Aligned_cols=190  Identities=9%  Similarity=0.017  Sum_probs=119.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +.++++-..++.|..++........... .......++++|++..++++-...+.|.+++...................+
T Consensus        48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i  127 (267)
T 1npe_A           48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI  127 (267)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEE
Confidence            4555565667889999987665444332 225788999999764677777778899999986433222222222456899


Q ss_pred             EEcCCCCCeEEEecC--CCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceecc
Q psy11351         86 MFNPVEARLVATANS--KDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~  161 (224)
                      +++|.++.++++...  .+.|..+++... ....+. ........++++|++..|+.+. ..+.|.++|+........+.
T Consensus       128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~  206 (267)
T 1npe_A          128 VTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE  206 (267)
T ss_dssp             EEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred             EEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence            999944444444433  467888887643 222222 2334678899999887776654 45679999987543322222


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .......     ++..  ++.++++....+.|..+|..+++..
T Consensus       207 ~~~~P~g-----i~~d--~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          207 GLQYPFA-----VTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             CCCSEEE-----EEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCceE-----EEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence            1111112     2222  4566677667789999999988764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.25  E-value=3.3e-09  Score=75.37  Aligned_cols=178  Identities=12%  Similarity=0.136  Sum_probs=119.1

Q ss_pred             ceEEEEEeCCC--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDD--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +.++.+.+.+|  .|+.+|+++++.+....-..........+.+..+....-.++.+.+||..+.+.+.++...... ..
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wg  109 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WA  109 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CE
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eE
Confidence            56677777764  8999999999998877544444433333334366777778999999999999988888643332 34


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec--CC---CceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG--SC---ESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      ++  + ++..|+.+..++.|.++|..+.+....+.-  +.   ..+..+.+. +|+..+..-.+..|.+.|..+++.+..
T Consensus       110 lt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          110 LT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             EE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred             Ee--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence            44  3 344454455688999999999877666553  22   234556665 566554444677899999999998877


Q ss_pred             cccCCc---------ccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        160 FDHEGY---------YNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      +...+-         ...-...-+++.|..+.+++||-.
T Consensus       186 idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          186 IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            732211         111235668888876777777754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.24  E-value=1.1e-09  Score=81.34  Aligned_cols=181  Identities=10%  Similarity=0.075  Sum_probs=113.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-----ccCCeeEEEEcCCCCcEEEE----ecC-------------CC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFAS----ACD-------------DG   59 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s----~~~-------------d~   59 (224)
                      +.+..|+++++...++.|.+|+.+ ++......     ....++++++.|+| +++++    |..             .+
T Consensus        92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A           92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCC
Confidence            345667766665566789999986 55443331     12457789999998 77776    332             35


Q ss_pred             EEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCC------CcEEEEecCCCce--eeEee-cCCCceeEEEE
Q psy11351         60 RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSK------DGIALYDTRKPKE--VLMQY-GSCESCMSIRF  130 (224)
Q Consensus        60 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~--~~~~~-~~~~~v~~~~~  130 (224)
                      .|..+|..+++.....  .......++|+| +++.|+.+...      +.|.+||+.....  ...+. ........+++
T Consensus       170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~  246 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA--DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV  246 (305)
T ss_dssp             EEEEECSSSCCCEEEE--EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred             eEEEEcCCCCcEEEEe--cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence            7888887666643332  334568899999 77766665544      6899999875431  11111 12344567899


Q ss_pred             cCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      +++|++.++ ..++ |.+|+. .++.+..+.....+     ..++|.| +++.|..++.++ ++.++
T Consensus       247 d~~G~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~~~-----~~~~f~~-d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          247 DRGGWLWSS-SGTG-VCVFDS-DGQLLGHIPTPGTA-----SNCTFDQ-AQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CTTSCEEEC-CSSE-EEEECT-TSCEEEEEECSSCC-----CEEEECT-TSCEEEEEETTE-EEEEE
T ss_pred             CCCCCEEEe-cCCc-EEEECC-CCCEEEEEECCCce-----eEEEEeC-CCCEEEEEcCCe-EEEEE
Confidence            999995544 4454 999998 46666666433333     3367776 566666555554 44443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=3.2e-10  Score=85.72  Aligned_cols=191  Identities=12%  Similarity=0.054  Sum_probs=120.0

Q ss_pred             CCCCcceEEEEEeC-----CCcEEEEeCCCCceeeEEec-------cCCeeEEEEcCCCCcEEEEec---CCCEEEEEec
Q psy11351          2 ASGDPIKVLRVIGN-----DDHVISHDMASGDPIDFYLH-------ERPVYGLSVDPSQDAIFASAC---DDGRVLLFDT   66 (224)
Q Consensus         2 a~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~   66 (224)
                      +++..++++++-..     ++.|.+||+++++.+..+..       ...+..++++|++...+++-.   .++.|.+||.
T Consensus        73 ~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~  152 (343)
T 2qe8_A           73 KSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL  152 (343)
T ss_dssp             EECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred             EEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence            45566776665543     57899999999987766532       235689999986535666655   6789999999


Q ss_pred             CCcccceeeccC-----------------------------CcCeEEEEEcCCCCCeEEEecCCC-cEEEEecC---CCc
Q psy11351         67 RSREEATELAVN-----------------------------SGPFHAVMFNPVEARLVATANSKD-GIALYDTR---KPK  113 (224)
Q Consensus        67 ~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~~l~~~~~dg-~v~i~d~~---~~~  113 (224)
                      .+++....+..|                             ...+..++|+| +++.|+.+..++ .+..++..   .+.
T Consensus       153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~  231 (343)
T 2qe8_A          153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQ  231 (343)
T ss_dssp             TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred             CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence            877654433221                             12368899999 777777665554 55555432   110


Q ss_pred             ----e---eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEE
Q psy11351        114 ----E---VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       114 ----~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  186 (224)
                          .   .....++......++++++|+++++...++.|.+||..+++........ ..  .....+++.+ ++.++++
T Consensus       232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~--~~p~~va~~~-~g~l~v~  307 (343)
T 2qe8_A          232 LTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KL--SWTDSFNFGS-DGYLYFD  307 (343)
T ss_dssp             CCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GG--SCEEEEEECT-TSCEEEE
T ss_pred             CChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ce--ecCCeeEECC-CCcEEEE
Confidence                0   0011223345677999999998888888899999998556532222211 11  1133467777 5777777


Q ss_pred             cCCCCeEEEEe
Q psy11351        187 GSDDFVLYMWR  197 (224)
Q Consensus       187 ~~~d~~v~iw~  197 (224)
                      .+..+.+.+|.
T Consensus       308 ~~~~~~~~~f~  318 (343)
T 2qe8_A          308 CNQLHHSAPLN  318 (343)
T ss_dssp             ECCGGGSGGGB
T ss_pred             eCccccccccc
Confidence            76555554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=3.2e-09  Score=79.68  Aligned_cols=174  Identities=13%  Similarity=0.095  Sum_probs=107.4

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEEec-----cCCeeEEEEcCCCCcEEEEecC------CCEEEEEecCCcccc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFYLH-----ERPVYGLSVDPSQDAIFASACD------DGRVLLFDTRSREEA   72 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~   72 (224)
                      +++++++++. .+ .|.+||..+++.......     ...++++.++|+| +++++...      .+.|..++  +++. 
T Consensus        98 ~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~-  171 (326)
T 2ghs_A           98 ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV-  171 (326)
T ss_dssp             EETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE-
T ss_pred             eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE-
Confidence            4456666654 44 499999988876544321     2358899999998 56665432      24566666  4443 


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecC--CC-ce-----eeEeecCCCceeEEEEcCCCCeEeeeecC
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTR--KP-KE-----VLMQYGSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      ..+.........++|+| +++.+ ++.+.++.|.+||+.  ++ ..     ...+.........++++++|++.++...+
T Consensus       172 ~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          172 TKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             EEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             EEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence            23323334567899999 66644 555667899999986  44 21     11111234567889999999877776666


Q ss_pred             CCcEEEECCCCCcceecccCCcccceeeeEEEEe-CCCCe-EEEEcCCC
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFA-GTQDE-YVVSGSDD  190 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~s~~~d  190 (224)
                      +.|.+||. +++.+..+.....    ....++|. + +++ ++++...+
T Consensus       251 ~~v~~~d~-~g~~~~~i~~~~~----~~~~~af~g~-d~~~L~vt~~~~  293 (326)
T 2ghs_A          251 GAVDRYDT-DGNHIARYEVPGK----QTTCPAFIGP-DASRLLVTSARE  293 (326)
T ss_dssp             TEEEEECT-TCCEEEEEECSCS----BEEEEEEEST-TSCEEEEEEBCT
T ss_pred             CEEEEECC-CCCEEEEEECCCC----CcEEEEEecC-CCCEEEEEecCC
Confidence            78999998 5666655532221    13447776 5 444 44544444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.21  E-value=3.2e-08  Score=75.64  Aligned_cols=175  Identities=9%  Similarity=-0.088  Sum_probs=112.5

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEecCCcccceeeccC-------Cc
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC----------DDGRVLLFDTRSREEATELAVN-------SG   80 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~   80 (224)
                      +|.++|..+++.+..+.-...- .++++|++ ++++.+.          .++.|.+||..+.+.+..+...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            8899999999988777333333 99999999 6666664          3678999999988776655322       12


Q ss_pred             CeEEEEEcCCCCCeEEEecC--CCcEEEEecCCCceeeE-eecCCCceeEEEEcCCC-CeEeeeecCCCcEEEECCCCCc
Q psy11351         81 PFHAVMFNPVEARLVATANS--KDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKAG-TQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      .-..+.|+| ++++|+.+..  ++.|.++| .+++.... +. ...   ++.+.|++ +.+++.+.|+.+.++|. +++.
T Consensus       126 ~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          126 YSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             CccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            245789999 8888887764  57899999 88876555 32 222   24555665 34556678899999999 7766


Q ss_pred             ceeccc-CCcccc-eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        157 VAQFDH-EGYYNS-CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       157 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ...... ...+.. -.+....+.+.++.+++.. .++.+.+.|+.++.
T Consensus       199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~  245 (373)
T 2mad_H          199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAG  245 (373)
T ss_pred             EEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCc
Confidence            533210 000000 0011133444334444443 67889999987653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.18  E-value=1.4e-08  Score=77.56  Aligned_cols=186  Identities=10%  Similarity=-0.078  Sum_probs=116.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEec----------cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLH----------ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA   76 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~   76 (224)
                      +..+..++.++.|..+|.++++.+..+..          ...+.+.-.. ++ ..++.++.++.|..+|.++++.+....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SG-GHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ET-TEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eC-CEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            45677888899999999999998766632          2223222222 23 467778889999999999999876665


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCce-----eEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESC-----MSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      ............   +..++.++.++.+..+|.++++............     ......  +..++++..++.+..+|.
T Consensus       131 ~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          131 VAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             CSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred             CCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence            433221122222   3467777889999999999997766654322111     111222  456777888889999999


Q ss_pred             CCCCcceecccCCccc--------ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        152 RSSSPVAQFDHEGYYN--------SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+++.+..........        .+...++ .   .+..++.++.++.+..+|..+++.
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~-~---~~~~v~~~~~~g~l~~~d~~tG~~  261 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPV-V---VNGVVFALAYNGNLTALDLRSGQI  261 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCE-E---ETTEEEEECTTSCEEEEETTTCCE
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcE-E---ECCEEEEEecCcEEEEEECCCCcE
Confidence            9998876663221100        0001111 1   234455556677888888877765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.16  E-value=4e-12  Score=97.14  Aligned_cols=141  Identities=8%  Similarity=0.021  Sum_probs=80.2

Q ss_pred             cEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCC-cee-E
Q psy11351         50 AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCE-SCM-S  127 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~v~-~  127 (224)
                      ..+++++.|+.|+.||..+++.+..+..  +.+.+..+.. ++..+++++.||.|+.||.++++.......+.. .+. +
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            6888999999999999999998888765  4455555555 667888888999999999988866544432211 110 0


Q ss_pred             EEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        128 IRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..+. .+..+++++.++.++.||.++|+.+..+.....        ..++| ++..+++++.|+.|+.||..+++.
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--------~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--------DSLSP-STSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--------ccccc-cCCEEEEEecCCEEEEEECCCCCE
Confidence            0111 345778888899999999999998877743221        12334 577888888999999999999876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.15  E-value=6.1e-09  Score=85.94  Aligned_cols=189  Identities=10%  Similarity=0.045  Sum_probs=118.0

Q ss_pred             cceEEEEEeCCC-------------cEEEEeCCCCce--eeEE---e-ccCCeeEEEEcCCCCcEEEEec---CCCEEEE
Q psy11351          6 PIKVLRVIGNDD-------------HVISHDMASGDP--IDFY---L-HERPVYGLSVDPSQDAIFASAC---DDGRVLL   63 (224)
Q Consensus         6 ~~~~l~~~~~dg-------------~i~iwd~~~~~~--~~~~---~-~~~~v~~~~~~~~~~~~l~s~~---~d~~i~i   63 (224)
                      +++.|+.++.+.             .|++|++.+...  ...+   . |......+.|+|++..++++.+   .+..|.+
T Consensus       184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence            567777777664             399999987653  3333   2 3446788999999944444443   2358999


Q ss_pred             EecCCcc-cceeeccCCcCeEEEEEcCCCCCeEEEecCC---CcEEEEecCCCce--eeEeecCCCceeEEEEcCCCCeE
Q psy11351         64 FDTRSRE-EATELAVNSGPFHAVMFNPVEARLVATANSK---DGIALYDTRKPKE--VLMQYGSCESCMSIRFNKAGTQL  137 (224)
Q Consensus        64 wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l  137 (224)
                      +|+.+++ ....+..+....... +++.++.+++.+..+   +.|..+|+.++..  ...+..+...+.  .|+++++.|
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l  340 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL  340 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence            9998764 345555555555554 455355666665543   5789999987643  244555655554  899999988


Q ss_pred             eeeecCC---CcEEEECCCCCcceecc--cCCcccceeeeEEEEeCCCCeEEEEcCC---CCeEEEEeCCCCCe
Q psy11351        138 LGLRRRL---PPVLYNTRSSSPVAQFD--HEGYYNSCTMKSCCFAGTQDEYVVSGSD---DFVLYMWRVPRDDI  203 (224)
Q Consensus       138 ~~~~~d~---~v~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~v~iw~~~~~~~  203 (224)
                      +....++   .|++|++..+ ....+.  ..+.+.     .+.+++++..++++.+.   -+.++.||+.+++.
T Consensus       341 v~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~-----~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          341 FAEYMVDATARVEQFDYEGK-RVREVALPGLGSVS-----GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEE-----ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEEECCeeEEEEEECCCC-eeEEeecCCCceEE-----eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            8776544   5889988744 333432  222222     23445533344443332   37899999987764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.13  E-value=1.8e-07  Score=68.04  Aligned_cols=190  Identities=7%  Similarity=0.030  Sum_probs=120.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCcee-----eEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPI-----DFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      |.+|+.+.. +.|+.++++.....     ..+ .....+..++|++++..++++-..++.|..++.........+.....
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            345555553 48999998765432     122 22346789999997646777777789999999876543333322224


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-CCCceeEEEEcCCCCeEeeeec---CCCcEEEECCCCCc
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-SCESCMSIRFNKAGTQLLGLRR---RLPPVLYNTRSSSP  156 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~d~~~~~~  156 (224)
                      ....+++++.++.++++-...+.|.++++..... ..+.. .......++++|++..|+.+..   .+.|..+++... .
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~  157 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N  157 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C
Confidence            6789999984456666666778899999874322 22222 2246789999997776666553   356778887643 2


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ...+... ...  ....++++|..+.++++-...+.|..+|.....
T Consensus       158 ~~~~~~~-~~~--~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          158 RRILAQD-NLG--LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CEEEECT-TCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             cEEEEEC-CCC--CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            2222111 111  123467777445666777778899999987543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=5.4e-08  Score=74.27  Aligned_cols=183  Identities=10%  Similarity=0.028  Sum_probs=117.0

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCee------EEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVY------GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      ..++.++.++.|..+|..+++.+..+.....+.      .....  + ..++.+..++.+..+|.++++.+.........
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            357777888889999998888776664332221      12222  2 46777888999999999999877665422100


Q ss_pred             ----eEE---EEEcC-CCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         82 ----FHA---VMFNP-VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        82 ----i~~---~~~~~-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                          +..   +...| ..+..++.++.++.+..+|.++++.......  .....+..  ++..+++++.++.+..+|..+
T Consensus       221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             ---------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTT
T ss_pred             CCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCC
Confidence                000   00011 0235666777899999999999876654432  22333433  467788888899999999999


Q ss_pred             CCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.+.... ........    ...   .+..|+.++.+|.|+.+|..+++..
T Consensus       297 G~~~w~~~~~~~~~~~~----~~~---~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          297 GVTLWTQSDLLHRLLTS----PVL---YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             CCEEEEECTTTTSCCCC----CEE---ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcEEEeecccCCCcccC----CEE---ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            98876653 22211111    111   2456777888999999999999874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=1.2e-08  Score=76.26  Aligned_cols=177  Identities=13%  Similarity=0.068  Sum_probs=117.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      ..+..++.++.+..+|.+ ++..... .....+.++...+++ . +..++.++.|..+|.. ++....+......+.++.
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            456777888999999998 7665555 344456677777776 4 5567778999999998 776666655555667777


Q ss_pred             EcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCc-
Q psy11351         87 FNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGY-  165 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~-  165 (224)
                      ..+ ++.+++..   +.+..+| .+++...........+.++...++|. +..++.++.+..+|. +++.+..+..... 
T Consensus       184 ~d~-~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~  256 (330)
T 3hxj_A          184 IGK-DGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRI  256 (330)
T ss_dssp             ECT-TCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred             EcC-CCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence            766 55555444   7899999 66666555555556678888888765 455566777888874 5555555532222 


Q ss_pred             ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        166 YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ...     ....  .+..|..++.++.|..+|. +++.
T Consensus       257 ~~~-----~~~~--~~g~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          257 ESS-----PVIG--NTDTIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             CSC-----CEEC--TTSCEEEECTTCEEEEECT-TSCE
T ss_pred             ccc-----ceEc--CCCeEEEecCCCCEEEECC-CCcE
Confidence            222     1222  2445667778888999996 5554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=3.4e-08  Score=81.13  Aligned_cols=181  Identities=11%  Similarity=0.094  Sum_probs=121.4

Q ss_pred             CCcEEEEeCCCCceeeEEecc--------------------------------CCeeEEEEcCCCCcEEEEecCCC----
Q psy11351         16 DDHVISHDMASGDPIDFYLHE--------------------------------RPVYGLSVDPSQDAIFASACDDG----   59 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~--------------------------------~~v~~~~~~~~~~~~l~s~~~d~----   59 (224)
                      +|.|..+|.++++.+..+...                                .....+++.|+. .+++.+..++    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWN  255 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccc
Confidence            589999999999988766210                                011246788877 6777777766    


Q ss_pred             ---------------EEEEEecCCcccceeecc--CC-------cCeEEEEEcCCCCC---eEEEecCCCcEEEEecCCC
Q psy11351         60 ---------------RVLLFDTRSREEATELAV--NS-------GPFHAVMFNPVEAR---LVATANSKDGIALYDTRKP  112 (224)
Q Consensus        60 ---------------~i~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~~---~l~~~~~dg~v~i~d~~~~  112 (224)
                                     .|..+|.++++.+..++.  |.       .+.....+.. +++   .++.++.+|.++++|.+++
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCC
Confidence                           499999999998877653  22       2222222222 333   6888999999999999998


Q ss_pred             ceeeEeecCC------------Cc------------------------eeEEEEcCCCCeEeee----------------
Q psy11351        113 KEVLMQYGSC------------ES------------------------CMSIRFNKAGTQLLGL----------------  140 (224)
Q Consensus       113 ~~~~~~~~~~------------~~------------------------v~~~~~~~~~~~l~~~----------------  140 (224)
                      +.+.......            .+                        -..++++|+...+++.                
T Consensus       335 ~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~  414 (668)
T 1kv9_A          335 KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFV  414 (668)
T ss_dssp             CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCC
T ss_pred             CEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccc
Confidence            7663322100            00                        0126777776655431                


Q ss_pred             --------------------ecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        141 --------------------RRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       141 --------------------~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                                          ..++.|+.||+.+++.+.+...........+..      .+.+++.++.|+.++.||.++
T Consensus       415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t------~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST------AGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEECTTSEEEEEETTT
T ss_pred             cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEe------CCCEEEEECCcccchhhhhhc
Confidence                                123679999999999887775444433333333      577888889999999999999


Q ss_pred             CCeE
Q psy11351        201 DDIY  204 (224)
Q Consensus       201 ~~~~  204 (224)
                      ++..
T Consensus       489 G~~l  492 (668)
T 1kv9_A          489 GEAL  492 (668)
T ss_dssp             CCEE
T ss_pred             Chhh
Confidence            9885

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.08  E-value=3.5e-08  Score=70.80  Aligned_cols=163  Identities=10%  Similarity=-0.009  Sum_probs=115.3

Q ss_pred             eeeEEeccCC--eeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE--EEEEcCCCCCeEEEecCCCcE
Q psy11351         29 PIDFYLHERP--VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH--AVMFNPVEARLVATANSKDGI  104 (224)
Q Consensus        29 ~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~~~~dg~v  104 (224)
                      .+..+.|...  ...+.|+. + .++.+.+.+|.|+.+|+++++.+..+ .. ....  .+++.  +++++...-.++.+
T Consensus        45 Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred             EEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEE
Confidence            4455566544  47888874 3 78889999999999999999987776 32 2333  35554  34666666678999


Q ss_pred             EEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc---cCCcccceeeeEEEEeCCCC
Q psy11351        105 ALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD---HEGYYNSCTMKSCCFAGTQD  181 (224)
Q Consensus       105 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  181 (224)
                      .+||..+.+.+..+.-.. .-..++  ++++.|+.+..++.|+++|..+.+.+..+.   ....+..  ...+.|.  ++
T Consensus       119 ~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~--lNeLe~~--dG  191 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL--INELECA--NG  191 (268)
T ss_dssp             EEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC--EEEEEEE--TT
T ss_pred             EEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc--ccccEEe--CC
Confidence            999999998877776422 223344  567888887778899999999998887773   2222222  2334554  67


Q ss_pred             eEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        182 EYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       182 ~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..++..-.+..|.+.|..+++..
T Consensus       192 ~lyanvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          192 VIYANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             EEEEEETTCSEEEEECTTTCBEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcEE
Confidence            77777667889999999999874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.07  E-value=6.5e-08  Score=77.98  Aligned_cols=180  Identities=7%  Similarity=-0.091  Sum_probs=118.2

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCe---------------------------------------eEEEEcCCCCcEEEEec
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPV---------------------------------------YGLSVDPSQDAIFASAC   56 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~~l~s~~   56 (224)
                      ++.|..+|.++++.+..+......                                       ..+++.+.. ..++.+.
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~  253 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGS  253 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEEC
Confidence            789999999999988766321111                                       135566665 4555544


Q ss_pred             CC----------------CEEEEEecCCcccceeeccC----------CcCeEEEEEcCCCC---CeEEEecCCCcEEEE
Q psy11351         57 DD----------------GRVLLFDTRSREEATELAVN----------SGPFHAVMFNPVEA---RLVATANSKDGIALY  107 (224)
Q Consensus        57 ~d----------------~~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~~~~~---~~l~~~~~dg~v~i~  107 (224)
                      .+                +.|..+|.++++.+..++..          ..++. +.... ++   ..++.++.+|.+.++
T Consensus       254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~l  331 (571)
T 2ad6_A          254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEE
Confidence            32                36999999999987766432          12222 22223 44   367788899999999


Q ss_pred             ecCCCceeeEeecCC-------------Cce--------------------------eEEEEcCCCCeEeeee-------
Q psy11351        108 DTRKPKEVLMQYGSC-------------ESC--------------------------MSIRFNKAGTQLLGLR-------  141 (224)
Q Consensus       108 d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~~~l~~~~-------  141 (224)
                      |.++++.+....-..             .++                          ..++++|+...+++..       
T Consensus       332 D~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~  411 (571)
T 2ad6_A          332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDW  411 (571)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccc
Confidence            999987765543111             111                          2357888777766643       


Q ss_pred             ------------------------------cCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        142 ------------------------------RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       142 ------------------------------~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                                                    .++.|..||+.+++.+.++..........+..      .+..++.++.|+
T Consensus       412 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t------~gg~v~~g~~dg  485 (571)
T 2ad6_A          412 EPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT------KGGLVWYATLDG  485 (571)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE------TTTEEEEECTTS
T ss_pred             cccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEE------CCCEEEEEcCCC
Confidence                                          24678999999999887775444333322222      456677789999


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      .|+.||.+++++.
T Consensus       486 ~l~a~D~~tG~~l  498 (571)
T 2ad6_A          486 YLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             eEEEEECCCCCEE
Confidence            9999999999884

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.06  E-value=1.8e-08  Score=83.05  Aligned_cols=156  Identities=10%  Similarity=0.133  Sum_probs=105.8

Q ss_pred             cceEEEEEeCCCc-------------------EEEEeCCCCceeeEEe---cc-------CCeeEEEEcCCCC--cEEEE
Q psy11351          6 PIKVLRVIGNDDH-------------------VISHDMASGDPIDFYL---HE-------RPVYGLSVDPSQD--AIFAS   54 (224)
Q Consensus         6 ~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~---~~-------~~v~~~~~~~~~~--~~l~s   54 (224)
                      .+.+++.++.++.                   |..+|.++++.+..+.   |.       .+........++.  ..++.
T Consensus       245 ~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~  324 (689)
T 1yiq_A          245 ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQ  324 (689)
T ss_dssp             TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEE
Confidence            3456777777763                   9999999999887662   22       1222222223441  27889


Q ss_pred             ecCCCEEEEEecCCcccceeeccCC----------------------------c-----------CeEEEEEcCCCCCeE
Q psy11351         55 ACDDGRVLLFDTRSREEATELAVNS----------------------------G-----------PFHAVMFNPVEARLV   95 (224)
Q Consensus        55 ~~~d~~i~iwd~~~~~~~~~~~~~~----------------------------~-----------~i~~~~~~~~~~~~l   95 (224)
                      ++.+|.++++|.++++.+...+...                            .           .-..++++| +..++
T Consensus       325 ~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~  403 (689)
T 1yiq_A          325 APKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLV  403 (689)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEE
T ss_pred             ECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEE
Confidence            9999999999999998763221100                            0           011267888 55555


Q ss_pred             EEecC---------------------------------------------CCcEEEEecCCCceeeEeecCCCceeEEEE
Q psy11351         96 ATANS---------------------------------------------KDGIALYDTRKPKEVLMQYGSCESCMSIRF  130 (224)
Q Consensus        96 ~~~~~---------------------------------------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~  130 (224)
                      ++...                                             +|.|..||+.+++.......+. +...-.+
T Consensus       404 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~  482 (689)
T 1yiq_A          404 YIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTL  482 (689)
T ss_dssp             EEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEE
T ss_pred             EEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccc
Confidence            54421                                             3779999999998776665432 3333456


Q ss_pred             cCCCCeEeeeecCCCcEEEECCCCCcceecccC
Q psy11351        131 NKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE  163 (224)
Q Consensus       131 ~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~  163 (224)
                      ...+..++.++.|+.++.||.++|+.+.++...
T Consensus       483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          483 STAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            667889999999999999999999999888533

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=6.7e-08  Score=69.92  Aligned_cols=168  Identities=9%  Similarity=0.018  Sum_probs=115.9

Q ss_pred             ceeeEEeccCC--eeEEEEcCCCCcEEEEecC--CCEEEEEecCCcccceeeccCCc-CeEEEEEcCCCCCeEEEecCCC
Q psy11351         28 DPIDFYLHERP--VYGLSVDPSQDAIFASACD--DGRVLLFDTRSREEATELAVNSG-PFHAVMFNPVEARLVATANSKD  102 (224)
Q Consensus        28 ~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg  102 (224)
                      +.+..+.|...  ...+.|+|++ .++++.+.  ++.|.++|..+++.+..+..... ....+++..  +.++++.-.++
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCS
T ss_pred             eEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCC
Confidence            44556666643  5799999986 66666553  68999999999998777643222 223455543  45666666789


Q ss_pred             cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccC---CcccceeeeEEEEeCC
Q psy11351        103 GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE---GYYNSCTMKSCCFAGT  179 (224)
Q Consensus       103 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  179 (224)
                      .+.++|..+.+.+..+.-...  ....+++||+.++++..++.|.++|..+.+.+..+.-.   .++..  ...+.|.  
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~--~nele~~--  160 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR--LNELEYI--  160 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC--EEEEEEE--
T ss_pred             EEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc--ceeEEEE--
Confidence            999999999877776643211  22346678888888777889999999998887777321   12111  2234555  


Q ss_pred             CCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++..++....++.|.+.|..+++..
T Consensus       161 dg~lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred             CCEEEEecCCCCeEEEEECCCCcEE
Confidence            5677777767889999999999874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=7.9e-08  Score=74.13  Aligned_cols=146  Identities=12%  Similarity=0.026  Sum_probs=99.6

Q ss_pred             CcceEEEEEeCC------CcEEEEeCCCCceeeEEe---cc-CCeeEEEEcCCCCcEEEEec------------------
Q psy11351          5 DPIKVLRVIGND------DHVISHDMASGDPIDFYL---HE-RPVYGLSVDPSQDAIFASAC------------------   56 (224)
Q Consensus         5 ~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~---~~-~~v~~~~~~~~~~~~l~s~~------------------   56 (224)
                      ..| +++++..+      |.|.++|.++.+.+..+.   .. ..-+++.|+|++ +.+++..                  
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~  224 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKD  224 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhh
Confidence            445 66666665      789999999999988773   21 234568889998 7877774                  


Q ss_pred             -CCCEEEEEecCCcccceeeccC-C-cCeEEEEE--cCCCCCeEEEec------CCCcEEEEecCCCce--eeE--eec-
Q psy11351         57 -DDGRVLLFDTRSREEATELAVN-S-GPFHAVMF--NPVEARLVATAN------SKDGIALYDTRKPKE--VLM--QYG-  120 (224)
Q Consensus        57 -~d~~i~iwd~~~~~~~~~~~~~-~-~~i~~~~~--~~~~~~~l~~~~------~dg~v~i~d~~~~~~--~~~--~~~-  120 (224)
                       .+.+|.+||+.+++.+.++... . ..-..+.|  +| ++++++.+.      .++.|.+|....++-  ...  +.. 
T Consensus       225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~  303 (462)
T 2ece_A          225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE  303 (462)
T ss_dssp             HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred             ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence             3689999999988777777542 1 23344545  99 676666655      566787765543311  000  000 


Q ss_pred             ---------------CCCceeEEEEcCCCCeEeeeec-CCCcEEEECCC
Q psy11351        121 ---------------SCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRS  153 (224)
Q Consensus       121 ---------------~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~  153 (224)
                                     .......+.++|||++|+++.. .+.|.+||+..
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                           0245678999999999988764 57899999863

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=1.5e-08  Score=83.24  Aligned_cols=189  Identities=10%  Similarity=0.087  Sum_probs=124.8

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCC------------eeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERP------------VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      ..++.++.++.|.-+|..+++.+..+.....            ...+.+  .+ ..++.++.|+.+..+|.++++.+..+
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~-~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WK-GKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--EC-CEEEEEcCCCEEEEEECCCCCEEeee
Confidence            4567777789999999999998877632211            122333  23 57888888999999999999988777


Q ss_pred             ccC-C----cCeEE-EEEcCCCCCeEEEec-----CCCcEEEEecCCCceeeEeecCCCc--------------------
Q psy11351         76 AVN-S----GPFHA-VMFNPVEARLVATAN-----SKDGIALYDTRKPKEVLMQYGSCES--------------------  124 (224)
Q Consensus        76 ~~~-~----~~i~~-~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~--------------------  124 (224)
                      ... .    ..+.+ ....  ++.+++..+     .++.|+.||.++++.+..+......                    
T Consensus       155 ~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            654 1    11111 1111  333433332     2689999999999877666532111                    


Q ss_pred             ------------eeEEEEcCCCCeEeeeecCC-------------------CcEEEECCCCCcceecc---cCCc----c
Q psy11351        125 ------------CMSIRFNKAGTQLLGLRRRL-------------------PPVLYNTRSSSPVAQFD---HEGY----Y  166 (224)
Q Consensus       125 ------------v~~~~~~~~~~~l~~~~~d~-------------------~v~v~d~~~~~~~~~~~---~~~~----~  166 (224)
                                  ...++++|++..++.+..++                   .|..+|.++|+.+..+.   +...    .
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                        13578899988888776553                   48999999999887763   2111    1


Q ss_pred             cceeeeEEEEeCCCC---eEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        167 NSCTMKSCCFAGTQD---EYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~---~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ....+..  ... ++   ..++.++.+|.++++|..+|+..
T Consensus       313 ~~p~l~~--~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          313 QPMILAD--IKI-AGKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             SCCEEEE--EEE-TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCcEEEe--ccc-CCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence            1111211  111 45   68999999999999999999885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=3.6e-08  Score=70.65  Aligned_cols=164  Identities=9%  Similarity=0.057  Sum_probs=113.7

Q ss_pred             eeeEEeccCCe--eEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeeccCCcCeE--EEEEcCCCCCeEEEecCCC
Q psy11351         29 PIDFYLHERPV--YGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAVNSGPFH--AVMFNPVEARLVATANSKD  102 (224)
Q Consensus        29 ~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~~~~dg  102 (224)
                      .+..+.|...-  ..+.|+ ++ .++.+.+.+|  .|+.+|+.+++.+..+.... ...  .+++.  +++++...-.++
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~  107 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCC
Confidence            44556676544  889998 55 7778887766  99999999999877775433 233  34443  345555555789


Q ss_pred             cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceeccc---CCcccceeeeEEEEeCC
Q psy11351        103 GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDH---EGYYNSCTMKSCCFAGT  179 (224)
Q Consensus       103 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  179 (224)
                      .+.+||..+.+.+..+.-..   ....++++++.|+.+..++.|+++|..+.+.+..+.-   ...+..  +..+.|.  
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~--lNELe~~--  180 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE--LNELEWV--  180 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC--EEEEEEE--
T ss_pred             EEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc--cceeEEE--
Confidence            99999999998877776422   2233446778887777678899999999988877732   122222  1224444  


Q ss_pred             CCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++..++..-.+..|.+.|..+++..
T Consensus       181 ~G~lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          181 DGEIFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred             CCEEEEEEccCCeEEEEECCCCcEE
Confidence            6777777767889999999999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.01  E-value=3.2e-08  Score=78.75  Aligned_cols=185  Identities=12%  Similarity=0.036  Sum_probs=126.8

Q ss_pred             cceEEEEEeC-CCcEEEEeCCCCceeeEE--eccCCeeEEEE-c-CCCCcEEEEe------------------cCCCEEE
Q psy11351          6 PIKVLRVIGN-DDHVISHDMASGDPIDFY--LHERPVYGLSV-D-PSQDAIFASA------------------CDDGRVL   62 (224)
Q Consensus         6 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~-~-~~~~~~l~s~------------------~~d~~i~   62 (224)
                      +|+++..... ++.|.+.|+.+.++...+  ........+++ . |++ .+++++                  -.++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEE
Confidence            4666665554 567999999999988855  34456888998 4 888 566666                  3456899


Q ss_pred             EEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCC--------------------------------------cE
Q psy11351         63 LFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKD--------------------------------------GI  104 (224)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------------------------------------~v  104 (224)
                      +.|..+.+....+..-. .-..++++| +++++++.+.+.                                      .|
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            99999988777775422 346677899 777777776443                                      36


Q ss_pred             EEEecCC--Cce-eeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCc------------ceecccCCcccc
Q psy11351        105 ALYDTRK--PKE-VLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSP------------VAQFDHEGYYNS  168 (224)
Q Consensus       105 ~i~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~------------~~~~~~~~~~~~  168 (224)
                      .+.|.++  ++. ...+. -.....++.++|||+++++++ .+.+|.++|+.+.+.            ........    
T Consensus       257 ~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~----  331 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL----  331 (595)
T ss_dssp             EEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS----
T ss_pred             EEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC----
Confidence            6777776  333 22222 223557799999999888765 578899999986431            11111111    


Q ss_pred             eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                       .-..++|+| ++..+++.-.|++|.+||+.+
T Consensus       332 -gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          332 -GPLHTAFDG-RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             -CEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred             -CcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence             123367888 577777888899999999987

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=2.3e-07  Score=71.62  Aligned_cols=190  Identities=13%  Similarity=0.076  Sum_probs=120.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCC----ceeeEEe-------cc-CCeeEEEEcCCCCcEEEEecCC------CEEEEEecCCc
Q psy11351          8 KVLRVIGNDDHVISHDMASG----DPIDFYL-------HE-RPVYGLSVDPSQDAIFASACDD------GRVLLFDTRSR   69 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~----~~~~~~~-------~~-~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~   69 (224)
                      .+++++..+++|.++|+.+.    +.++.+.       .. ..-..+...|++  +++++..+      +.|.++|.++.
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            35566778899999999755    4444441       11 245567888997  66666555      78999999999


Q ss_pred             ccceeeccCCc---CeEEEEEcCCCCCeEEEec-------------------CCCcEEEEecCCCceeeEeecC-C-Cce
Q psy11351         70 EEATELAVNSG---PFHAVMFNPVEARLVATAN-------------------SKDGIALYDTRKPKEVLMQYGS-C-ESC  125 (224)
Q Consensus        70 ~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~-------------------~dg~v~i~d~~~~~~~~~~~~~-~-~~v  125 (224)
                      +.+..+.....   --..+.|+| +.+.+++..                   .+..|.+||+.+.+....+.-. . ...
T Consensus       175 ~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P  253 (462)
T 2ece_A          175 EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMA  253 (462)
T ss_dssp             CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred             eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcc
Confidence            98887753222   234588899 788888874                   3688999999987655555432 1 234


Q ss_pred             eEEEE--cCCCCeEeeeec------CCCcEEEECCCCCc--ceec--c---cCCccc---------ceeeeEEEEeCCCC
Q psy11351        126 MSIRF--NKAGTQLLGLRR------RLPPVLYNTRSSSP--VAQF--D---HEGYYN---------SCTMKSCCFAGTQD  181 (224)
Q Consensus       126 ~~~~~--~~~~~~l~~~~~------d~~v~v~d~~~~~~--~~~~--~---~~~~~~---------~~~~~~~~~~~~~~  181 (224)
                      ..+.|  +|+++++++++.      +++|.+|....++.  ...+  .   ..+.+.         .-....+.++| ++
T Consensus       254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DG  332 (462)
T 2ece_A          254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DD  332 (462)
T ss_dssp             EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-TS
T ss_pred             ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-CC
Confidence            45655  999999888774      45677665543311  1111  0   000000         01123366777 56


Q ss_pred             eEE-EEcCCCCeEEEEeCCCC
Q psy11351        182 EYV-VSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       182 ~~l-~s~~~d~~v~iw~~~~~  201 (224)
                      ++| ++.-..+.|.+||+...
T Consensus       333 rfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSST
T ss_pred             CEEEEEeCCCCEEEEEEecCC
Confidence            665 45556789999998643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.98  E-value=2.5e-07  Score=74.80  Aligned_cols=181  Identities=10%  Similarity=-0.020  Sum_probs=117.1

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCe---------------------------------------eEEEEcCCCCcEEEEe
Q psy11351         15 NDDHVISHDMASGDPIDFYLHERPV---------------------------------------YGLSVDPSQDAIFASA   55 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~~l~s~   55 (224)
                      .+|.|+-+|.++++.+..+....+.                                       ...++.+.. .+++.+
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g  258 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFG  258 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEe
Confidence            3899999999999988766322111                                       134555665 566666


Q ss_pred             cCC----------------CEEEEEecCCcccceeeccCC----------cCeEEEEEc-CCCC---CeEEEecCCCcEE
Q psy11351         56 CDD----------------GRVLLFDTRSREEATELAVNS----------GPFHAVMFN-PVEA---RLVATANSKDGIA  105 (224)
Q Consensus        56 ~~d----------------~~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~~-~~~~---~~l~~~~~dg~v~  105 (224)
                      ..+                +.|..+|.++++.+..++...          .++. +... . ++   ..++.++.+|.+.
T Consensus       259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~  336 (599)
T 1w6s_A          259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVY  336 (599)
T ss_dssp             CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEE
T ss_pred             CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEE
Confidence            554                489999999999877665322          1222 2222 3 45   5677788999999


Q ss_pred             EEecCCCceeeEeecC-------------CCce--------------------------eEEEEcCCCCeEeeee-----
Q psy11351        106 LYDTRKPKEVLMQYGS-------------CESC--------------------------MSIRFNKAGTQLLGLR-----  141 (224)
Q Consensus       106 i~d~~~~~~~~~~~~~-------------~~~v--------------------------~~~~~~~~~~~l~~~~-----  141 (224)
                      ++|.++++.+......             ..++                          ..++++|+...+++..     
T Consensus       337 ~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~  416 (599)
T 1w6s_A          337 TLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICM  416 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEE
T ss_pred             EEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccce
Confidence            9999998776554311             0111                          2356677655554421     


Q ss_pred             ----------------------------------cCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEc
Q psy11351        142 ----------------------------------RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSG  187 (224)
Q Consensus       142 ----------------------------------~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  187 (224)
                                                        ..+.+..||+.+++.+.+.........-.+..      .+.+++.+
T Consensus       417 ~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agg~vf~g  490 (599)
T 1w6s_A          417 DWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT------AGDLVFYG  490 (599)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE------TTTEEEEE
T ss_pred             eeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe------cCCEEEEE
Confidence                                              23678889999998877764333222222222      46677778


Q ss_pred             CCCCeEEEEeCCCCCeE
Q psy11351        188 SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       188 ~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+.++.||.++|++.
T Consensus       491 t~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          491 TLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             CTTSEEEEEETTTCCEE
T ss_pred             CCCCeEEEEECCCCCEE
Confidence            99999999999999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.96  E-value=2.7e-07  Score=65.60  Aligned_cols=166  Identities=10%  Similarity=-0.002  Sum_probs=113.8

Q ss_pred             ceeeEEeccC--CeeEEEEcCCCCcEEEEecCCC--EEEEEecCCcccceeeccCCcC-eEEEEEcCCCCCeEEEecCCC
Q psy11351         28 DPIDFYLHER--PVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATELAVNSGP-FHAVMFNPVEARLVATANSKD  102 (224)
Q Consensus        28 ~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg  102 (224)
                      +.+..+.|..  -...+.|++ + .++.+.+.+|  .|+.+|+.+++.+..+...... -..+++.  +++++...-.++
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence            3455566754  466899987 4 6777777754  9999999999987776543221 1234443  345666666789


Q ss_pred             cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc---cCCcccceeeeEEEEeCC
Q psy11351        103 GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD---HEGYYNSCTMKSCCFAGT  179 (224)
Q Consensus       103 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  179 (224)
                      .+.+||..+.+.+..+.-.. .-..+  .+++..|+++..++.|.++|..+.+.+..+.   +...+..  ...+.|.  
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~--lNeLe~~--  158 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN--LNELEWV--  158 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC--EEEEEEE--
T ss_pred             EEEEEECCcCcEEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc--ceeeEEe--
Confidence            99999999998777766432 22344  4567777777778889999999998887773   2222222  1224444  


Q ss_pred             CCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++..++..-.+..|.+.|..+++..
T Consensus       159 ~G~lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCBEE
T ss_pred             CCEEEEEECCCCeEEEEECCCCCEE
Confidence            6777776667789999999999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=6e-08  Score=77.24  Aligned_cols=184  Identities=13%  Similarity=0.123  Sum_probs=114.8

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCC-----------------------------------
Q psy11351         15 NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDG-----------------------------------   59 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----------------------------------   59 (224)
                      .++.+.+.|.++.+....+.-.+....++++|+| +++++++.+.                                   
T Consensus       173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             cCceEEEEECCCCeEEEEEEeCCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            3568999999999888877544466788999998 6766666442                                   


Q ss_pred             ---EEEEEecCC--ccc-ceeeccCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCce-----------eeEeecC
Q psy11351         60 ---RVLLFDTRS--REE-ATELAVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKE-----------VLMQYGS  121 (224)
Q Consensus        60 ---~i~iwd~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~-----------~~~~~~~  121 (224)
                         .|.+.|.++  ++. +..+.. .....++.++| +++++ +++..+..|.++|+.+.+.           +.....-
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence               355666665  333 333432 22457899999 66655 5555788999999986531           2222234


Q ss_pred             CCceeEEEEcCCCCeEeeeecCCCcEEEECCC----------CCcceecc-cC--CcccceeeeEEEEeCCCCeEEEEcC
Q psy11351        122 CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS----------SSPVAQFD-HE--GYYNSCTMKSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~----------~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~s~~  188 (224)
                      ......++|+|+|...++.-.|+.|.+||+.+          .+.+.++. +-  ++...  -.....+| ++++|++..
T Consensus       330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~--~~g~t~~~-DGk~l~~~N  406 (595)
T 1fwx_A          330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT--VMGETLDA-TNDWLVCLS  406 (595)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE--TTTTSTTC-CSSEEEEEE
T ss_pred             CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccccee--ccceEeCC-CCCEEEEcC
Confidence            45678899999994444456788999999876          23333332 11  11100  00012234 788887753


Q ss_pred             ---CCCeE----------EEEeCCCCCeE
Q psy11351        189 ---DDFVL----------YMWRVPRDDIY  204 (224)
Q Consensus       189 ---~d~~v----------~iw~~~~~~~~  204 (224)
                         .|+.+          .++|+..++..
T Consensus       407 k~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          407 KFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             SCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             CCCccccccCCCCCCCcceEEEcCCCcEE
Confidence               35432          78999766653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.96  E-value=3.7e-06  Score=62.71  Aligned_cols=188  Identities=9%  Similarity=-0.026  Sum_probs=119.4

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC----cccceeeccCCcCeEEE
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS----REEATELAVNSGPFHAV   85 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~i~~~   85 (224)
                      |+.+. ...|+..|+.+.+.............++|++.+..++.+-..++.|..+++..    ......+...-.....+
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl   82 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence            34433 45799999998877666655567889999987646777777789999999875    22222222222345788


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC--CCcEEEECCCCCcceecccC
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR--LPPVLYNTRSSSPVAQFDHE  163 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~v~v~d~~~~~~~~~~~~~  163 (224)
                      ++++.+++++++-...+.|.++|+..................++++|.+..|+.+...  +.|..+++.. .....+...
T Consensus        83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~  161 (316)
T 1ijq_A           83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE  161 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECS
T ss_pred             EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEEC
Confidence            8886456666676778899999987543322223344567899999977766665543  5677777753 333333111


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                       ...  ....+++.|.++.++++-+..+.|..+|+....
T Consensus       162 -~~~--~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~  197 (316)
T 1ijq_A          162 -NIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (316)
T ss_dssp             -SCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             -CCC--CceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence             111  122367776556677777778899999987543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.95  E-value=2.8e-08  Score=76.91  Aligned_cols=101  Identities=9%  Similarity=-0.045  Sum_probs=80.5

Q ss_pred             CEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEec----------CCCcEEEEecCCCceeeEeecC-------
Q psy11351         59 GRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN----------SKDGIALYDTRKPKEVLMQYGS-------  121 (224)
Q Consensus        59 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~v~i~d~~~~~~~~~~~~~-------  121 (224)
                      +.|.++|..+++.+..+.....+  .+.++| +++.++.+.          .++.|.++|..+.+....+.-.       
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            79999999999998888765666  899999 777666664          4678999999998876665421       


Q ss_pred             CCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceeccc
Q psy11351        122 CESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQFDH  162 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~~~  162 (224)
                      ......+.|+|||++++++..  ++.|.++|+.+++.+.++.-
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            234567899999999999874  57899999999988887743

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.91  E-value=2.1e-08  Score=76.25  Aligned_cols=164  Identities=10%  Similarity=-0.067  Sum_probs=106.4

Q ss_pred             CCCCcceEEEEEe----------CCCcEEEEeCCCCceeeEEecc--------CCeeEEEEcCCCCcEEEEecC--CCEE
Q psy11351          2 ASGDPIKVLRVIG----------NDDHVISHDMASGDPIDFYLHE--------RPVYGLSVDPSQDAIFASACD--DGRV   61 (224)
Q Consensus         2 a~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~s~~~--d~~i   61 (224)
                      +++.++++++.+.          .+++|.+||+.+++.+..+.-.        .....+.++|+| ++++++..  +..+
T Consensus        71 ~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v  149 (368)
T 1mda_H           71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAA  149 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEE
T ss_pred             EECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeE
Confidence            4567777777765          3789999999999998887322        346789999999 66666643  4678


Q ss_pred             EE--EecCC-----------------------------------------cccce-------------------------
Q psy11351         62 LL--FDTRS-----------------------------------------REEAT-------------------------   73 (224)
Q Consensus        62 ~i--wd~~~-----------------------------------------~~~~~-------------------------   73 (224)
                      .+  +|..+                                         ++...                         
T Consensus       150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs  229 (368)
T 1mda_H          150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence            88  77743                                         00000                         


Q ss_pred             -----eec--cCC---------------------cCeEEEEEcCCCCCeEEEe-c---C-----CCcEEEEecCCCceee
Q psy11351         74 -----ELA--VNS---------------------GPFHAVMFNPVEARLVATA-N---S-----KDGIALYDTRKPKEVL  116 (224)
Q Consensus        74 -----~~~--~~~---------------------~~i~~~~~~~~~~~~l~~~-~---~-----dg~v~i~d~~~~~~~~  116 (224)
                           .+.  ...                     .....++++| ++..++.+ .   .     ++.+.++|+.+.+.+.
T Consensus       230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~  308 (368)
T 1mda_H          230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence                 000  000                     0001156788 55555543 3   2     2356699999987766


Q ss_pred             EeecCCCceeEEEEcCCCCeE-eeee-cCCCcEEEECCCCCcceecccCCcccc
Q psy11351        117 MQYGSCESCMSIRFNKAGTQL-LGLR-RRLPPVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~~l-~~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      .+.-. .....++|+|+|+.+ ++.. .++.|.++|+.+++.+..+.-......
T Consensus       309 ~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~  361 (368)
T 1mda_H          309 PISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES  361 (368)
T ss_dssp             CCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred             EEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCE
Confidence            55432 267899999999854 4555 489999999999999988853333333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=1.2e-07  Score=70.83  Aligned_cols=176  Identities=8%  Similarity=-0.009  Sum_probs=111.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMF   87 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~   87 (224)
                      .+..++.++.|..+|.+ ++....+ .....+.++.+.+++ .+++ ++  +.+..+| .+++....+......+.++..
T Consensus       149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~  222 (330)
T 3hxj_A          149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAI  222 (330)
T ss_dssp             CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEE
T ss_pred             EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEE
Confidence            36667788999999998 7766555 334567777787777 4444 44  7888999 777766666555566778888


Q ss_pred             cCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccC-Ccc
Q psy11351         88 NPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE-GYY  166 (224)
Q Consensus        88 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~-~~~  166 (224)
                      .+ ++. +..++.++.+..+|. +++....+......+..+.+.+++ .|.+++.++.+..+|. +++.+..+... ..+
T Consensus       223 ~~-~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~  297 (330)
T 3hxj_A          223 SE-DGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWII  297 (330)
T ss_dssp             CT-TSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCC
T ss_pred             CC-CCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccc
Confidence            77 554 444556778888884 454555444433444455565555 5666777878999996 66666555322 222


Q ss_pred             cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        167 NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .++     ...+ ++. |..++.+|.+++...+..+
T Consensus       298 ~~~-----~~d~-~g~-l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          298 ATP-----VIDE-NGT-IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             SCC-----EECT-TCC-EEEECTTSCEEEEEC----
T ss_pred             cce-----EEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence            222     2222 444 5667889999888765543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.90  E-value=2.3e-06  Score=65.64  Aligned_cols=191  Identities=11%  Similarity=-0.007  Sum_probs=118.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      .+.++.+-...+.|..++++......... .......+++.+.+.+++++-...+.|.+.++........+...-.....
T Consensus       127 ~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~g  206 (386)
T 3v65_B          127 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  206 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEE
T ss_pred             CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcE
Confidence            34455555566778888887665444432 22355788888765467777777889998887654333333333345789


Q ss_pred             EEEcCCCCCeEEEecCC-CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceecc-
Q psy11351         85 VMFNPVEARLVATANSK-DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQFD-  161 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~-  161 (224)
                      ++++|.++.++++-... +.|..+++............-.....++++|++..|+.+. ..+.|..+|+........+. 
T Consensus       207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~  286 (386)
T 3v65_B          207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ  286 (386)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS
T ss_pred             EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC
Confidence            99998455555555444 6788888764432222223344578999998877776664 45668888876433322222 


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .......++     +.  .+.++++-...+.|..++..+++.
T Consensus       287 ~~~~P~gia-----v~--~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          287 GLPHPFAIT-----VF--EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             SCSSEEEEE-----EE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCceEEE-----EE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence            122223333     32  567778878888999999666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.90  E-value=4.8e-06  Score=62.98  Aligned_cols=190  Identities=11%  Similarity=-0.018  Sum_probs=117.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      .+.++.+-...+.|..+++.......... .......+++.+.+.+++++-...+.|.+.++........+...-.....
T Consensus        84 ~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~  163 (349)
T 3v64_C           84 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  163 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred             ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence            34445555556777777777655444332 22456788998765467777777889999998754433233333345689


Q ss_pred             EEEcCCCCCeEEEecCC-CcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceecc
Q psy11351         85 VMFNPVEARLVATANSK-DGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~  161 (224)
                      ++++|.++.++.+-... +.|..+++.... ...+. ..-.....++++|++..|+.+. ..+.|..+|+........+.
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~  242 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS  242 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe
Confidence            99998555556665555 778888876432 22222 2334578999999877776664 45668888887533222221


Q ss_pred             -cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 -HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       .......++     +.  .+.++++-...+.|..++..+++.
T Consensus       243 ~~~~~P~gia-----v~--~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          243 QGLPHPFAIT-----VF--EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             SSCSSEEEEE-----EE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCCceEEE-----EE--CCEEEEecCCCCeEEEEEccCCCc
Confidence             122223333     32  567778877888999998666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.89  E-value=8.1e-06  Score=61.77  Aligned_cols=189  Identities=9%  Similarity=-0.019  Sum_probs=121.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEc
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFN   88 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~   88 (224)
                      +|+.+ ....|+..++...+..........+..++|++.+..++.+-...+.|..+++........+.........+++.
T Consensus        46 ~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd  124 (349)
T 3v64_C           46 VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD  124 (349)
T ss_dssp             EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred             eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEe
Confidence            34433 34568888888766655554455688999998664666676778899999987665333333223345688888


Q ss_pred             CCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-C-CCcEEEECCCCCcceecccCCcc
Q psy11351         89 PVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-R-LPPVLYNTRSSSPVAQFDHEGYY  166 (224)
Q Consensus        89 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~v~v~d~~~~~~~~~~~~~~~~  166 (224)
                      +.++.++++-...+.|.+.++..................++++|.+..|+.... . +.|..+++.... ...+...+ .
T Consensus       125 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~-~  202 (349)
T 3v64_C          125 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTH-L  202 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSS-C
T ss_pred             cCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECC-C
Confidence            756667777777789999998754332223234456789999997766665543 3 567777776432 22321111 1


Q ss_pred             cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        167 NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .  ....++++|.++.++++-+..+.|..+++....
T Consensus       203 ~--~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          203 F--WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             S--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             C--CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence            1  123367777567777777778899999987543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.87  E-value=3.2e-06  Score=64.90  Aligned_cols=189  Identities=9%  Similarity=-0.019  Sum_probs=121.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEc
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFN   88 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~   88 (224)
                      +|+.+ ....|+..++...+.............++|++.+..++++-...+.|..+++........+.........++++
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd  167 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD  167 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred             eeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence            44443 34679999998776655555556688999998664677777778899999987655333333222345678888


Q ss_pred             CCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-C-CCcEEEECCCCCcceecccCCcc
Q psy11351         89 PVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-R-LPPVLYNTRSSSPVAQFDHEGYY  166 (224)
Q Consensus        89 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~v~v~d~~~~~~~~~~~~~~~~  166 (224)
                      +.++.++++-...+.|.+.++..................++++|.+..|+.... . +.|..+++.... ...+...+ .
T Consensus       168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~-~  245 (386)
T 3v65_B          168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTH-L  245 (386)
T ss_dssp             TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSS-C
T ss_pred             eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECC-C
Confidence            745667777777788999888754332223333456789999998777666543 3 567777776433 22221111 1


Q ss_pred             cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        167 NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .  ....++++|.++.++++-+..+.|..+++....
T Consensus       246 ~--~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (386)
T 3v65_B          246 F--WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  279 (386)
T ss_dssp             S--CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred             C--CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence            1  122366766566777777778899999987543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.87  E-value=1e-06  Score=71.25  Aligned_cols=138  Identities=9%  Similarity=-0.044  Sum_probs=91.4

Q ss_pred             CEEEEEecCCcccceeecc--CC--------cCeEEEEEc-CCCC---CeEEEecCCCcEEEEecCCCceeeEeecCC--
Q psy11351         59 GRVLLFDTRSREEATELAV--NS--------GPFHAVMFN-PVEA---RLVATANSKDGIALYDTRKPKEVLMQYGSC--  122 (224)
Q Consensus        59 ~~i~iwd~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--  122 (224)
                      +.|..+|.++++.+..++.  |.        .++. +... . ++   ..++.++.+|.++++|.++++.+.......  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~  368 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI  368 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence            6899999999998877643  21        1222 2222 3 44   478889999999999999987765443211  


Q ss_pred             -----------Cc--------------------------------eeEEEEcCCCCeEeeee------------------
Q psy11351        123 -----------ES--------------------------------CMSIRFNKAGTQLLGLR------------------  141 (224)
Q Consensus       123 -----------~~--------------------------------v~~~~~~~~~~~l~~~~------------------  141 (224)
                                 .+                                -..++++|+...+++..                  
T Consensus       369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred             cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence                       00                                01346676655555432                  


Q ss_pred             ---------------cCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        142 ---------------RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       142 ---------------~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                     .++.|..||+.+++.+.+.........-.+..      .+.+++.++.|+.++.||.++|++.
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe------CCCEEEEECCCCcEEEEECCCCCEE
Confidence                           25678999999999887774433333322222      4667777999999999999999884

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.84  E-value=1.4e-05  Score=61.56  Aligned_cols=189  Identities=8%  Similarity=-0.030  Sum_probs=123.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc----ccceeeccCCcCeEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR----EEATELAVNSGPFHA   84 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~i~~   84 (224)
                      +|+.+. ...|+..++...+..........+..++|++.+..++.+-...+.|+.+++...    .....+.........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            444443 568999999887766666666788999999876466677677889999998652    222223323445788


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceeccc
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQFDH  162 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~~~  162 (224)
                      +++.+.+++++++-...+.|.+.++........+.........++++|.+.+|+....  .+.|...++...........
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            9998756667777777889999998765433333334456789999998777766542  36788888764333222221


Q ss_pred             -CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        163 -EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 -~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       -...+     .+++.+.++.++++-+..+.|..+|+.....
T Consensus       244 ~l~~P~-----glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          244 NIQWPN-----GITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             SCSCEE-----EEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             CCCceE-----EEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence             12222     3666665566667766778999999876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.82  E-value=3.7e-07  Score=75.01  Aligned_cols=189  Identities=13%  Similarity=0.091  Sum_probs=122.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCC------------eeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERP------------VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      +..++.++.++.|.-+|..+++.+..+.....            -..+.+.  + ..++.++.|+.|..+|.++++.+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--G-DKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--B-TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--C-CEEEEEcCCCEEEEEECCCCCEeee
Confidence            34677777899999999999998877632111            0112232  3 4777888899999999999998777


Q ss_pred             eccCC----cCeEE-EEEcCCCCCeEEEecC------CCcEEEEecCCCceeeEeecC---CC-----------------
Q psy11351         75 LAVNS----GPFHA-VMFNPVEARLVATANS------KDGIALYDTRKPKEVLMQYGS---CE-----------------  123 (224)
Q Consensus        75 ~~~~~----~~i~~-~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~---~~-----------------  123 (224)
                      +....    ..+.+ ..+.  ++ .++.+..      +|.|..+|.++++.+..+...   ..                 
T Consensus       143 ~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            65421    11111 1111  33 3444432      588999999999887666421   00                 


Q ss_pred             -----------ceeEEEEcCCCCeEeeeecCC-------------------CcEEEECCCCCcceecc---cCCcc----
Q psy11351        124 -----------SCMSIRFNKAGTQLLGLRRRL-------------------PPVLYNTRSSSPVAQFD---HEGYY----  166 (224)
Q Consensus       124 -----------~v~~~~~~~~~~~l~~~~~d~-------------------~v~v~d~~~~~~~~~~~---~~~~~----  166 (224)
                                 ....++++|+...++.+..++                   .|..+|.++|+.+..+.   |...-    
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                       112468888888888876655                   38899999999887773   21111    


Q ss_pred             cceeeeEEEEeCCCCe---EEEEcCCCCeEEEEeCCCCCeE
Q psy11351        167 NSCTMKSCCFAGTQDE---YVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~---~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ....+..+.+   ++.   .++.++.+|.++++|..+|+..
T Consensus       300 ~~~~~~d~~~---~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          300 QQITLAELNI---DGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             SCEEEEEEEE---TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCcEEEEecc---CCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            1111111222   454   6899999999999999999875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=4.2e-06  Score=62.45  Aligned_cols=187  Identities=9%  Similarity=0.057  Sum_probs=110.1

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEe-----ccCCeeEEEEcC-CCCcEEEEecC-----------------CCEEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDP-SQDAIFASACD-----------------DGRVL   62 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~l~s~~~-----------------d~~i~   62 (224)
                      .+++++ +...+.|..+|..+++......     .......+++.+ +| ++.++-..                 ++.|.
T Consensus        91 ~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           91 NNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             TTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             CCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEE
Confidence            454444 4344558888877654332221     123578899999 88 66665432                 47888


Q ss_pred             EEecCCcccceeeccCCcCeEEEEEcCCCCCe-EEEecCCCcEEEEecCCCc--eeeEeecCCCceeEEEEcCCCCeEee
Q psy11351         63 LFDTRSREEATELAVNSGPFHAVMFNPVEARL-VATANSKDGIALYDTRKPK--EVLMQYGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      .+|..+++....... ......++++| +++. +++-+.++.|..|++....  ....+....+ ...++++++|++.++
T Consensus       169 ~~d~~~~~~~~~~~~-~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          169 KYDPSTKETTLLLKE-LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             EEETTTTEEEEEEEE-ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred             EEeCCCCEEEEeccC-CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence            898876653222221 22346799999 7664 4454667889999987421  1112212223 788999999986666


Q ss_pred             eec----------CCCcEEEECCCCCcceecccC-Cc-ccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        140 LRR----------RLPPVLYNTRSSSPVAQFDHE-GY-YNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       140 ~~~----------d~~v~v~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ...          .+.|..+|.. ++.+..+... +. ...  ...+++.  ++.++++...++.|..+++....
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~--~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEH--FEQIQEH--DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSC--CCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred             ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCcccc--ceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence            544          3567888864 6666666322 21 111  1123332  67888887788899999986543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.76  E-value=1.9e-06  Score=64.29  Aligned_cols=187  Identities=13%  Similarity=0.051  Sum_probs=110.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe--------------------ccCCeeEEEEcC-CCCcEEEEecCCCE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL--------------------HERPVYGLSVDP-SQDAIFASACDDGR   60 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~~l~s~~~d~~   60 (224)
                      +.+..++++.++..++.|..|+..+++......                    ....+..+++.+ ++ +++++.. .+.
T Consensus        25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~-~~~  102 (322)
T 2fp8_A           25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDC-YYH  102 (322)
T ss_dssp             ECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEET-TTE
T ss_pred             EEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEEC-CCC
Confidence            455667767788889999999988765443221                    113578999998 55 5555434 455


Q ss_pred             EEEEecCCcccceeec----c-CCcCeEEEEEcCCCCCeEEEecC-----------------CCcEEEEecCCCceeeEe
Q psy11351         61 VLLFDTRSREEATELA----V-NSGPFHAVMFNPVEARLVATANS-----------------KDGIALYDTRKPKEVLMQ  118 (224)
Q Consensus        61 i~iwd~~~~~~~~~~~----~-~~~~i~~~~~~~~~~~~l~~~~~-----------------dg~v~i~d~~~~~~~~~~  118 (224)
                      |..+|..+++. ..+.    + .......+++.+.+++++++-..                 ++.|..||..+++.. .+
T Consensus       103 i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~  180 (322)
T 2fp8_A          103 LSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT-LL  180 (322)
T ss_dssp             EEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE-EE
T ss_pred             EEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE-Ee
Confidence            88888775542 2221    1 11246789998823455554322                 367888888766432 22


Q ss_pred             ecCCCceeEEEEcCCCCeEeee-ecCCCcEEEECCCCCc--ceec-ccCCcccceeeeEEEEeCCCCeEEEEcCC-----
Q psy11351        119 YGSCESCMSIRFNKAGTQLLGL-RRRLPPVLYNTRSSSP--VAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSD-----  189 (224)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----  189 (224)
                      .........++++|+++.|+++ ...+.|.+|++.....  ...+ ...+      ...+++.+ +++++++...     
T Consensus       181 ~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g------P~gi~~d~-~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN------PGNIKRNA-DGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS------EEEEEECT-TSCEEEEEEEETTSS
T ss_pred             ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC------CCCeEECC-CCCEEEEecCccccc
Confidence            2222344679999999977665 4567899999875321  1112 1112      22355555 5666665433     


Q ss_pred             -----CCeEEEEeCC
Q psy11351        190 -----DFVLYMWRVP  199 (224)
Q Consensus       190 -----d~~v~iw~~~  199 (224)
                           .+.|..+|..
T Consensus       254 ~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF  268 (322)
T ss_dssp             TTSCEEEEEEEECTT
T ss_pred             ccCCCccEEEEECCC
Confidence                 4567777754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.73  E-value=8.7e-06  Score=60.34  Aligned_cols=190  Identities=12%  Similarity=0.075  Sum_probs=113.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecC-C-CEEEEEecCCcccceeec-cC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACD-D-GRVLLFDTRSREEATELA-VN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~   78 (224)
                      +++..++++++-..++.|..||... +.............+++.+++ +++++... + ..|..+|..+++...... ..
T Consensus        38 a~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~  115 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPD  115 (306)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             EECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeCCC
Confidence            4556677777766788999999875 344444455678999999998 56555433 2 357777777766432221 11


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-eeEee---------cCCCceeEEEEcCCCCeEeeee-cCCCcE
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-VLMQY---------GSCESCMSIRFNKAGTQLLGLR-RRLPPV  147 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~l~~~~-~d~~v~  147 (224)
                      ......++..+ ++..+++-..++.|..+|...++. +....         ..-.....+  +|+++.|+++. ..+.|.
T Consensus       116 ~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~  192 (306)
T 2p4o_A          116 AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLL  192 (306)
T ss_dssp             CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEE
T ss_pred             ccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEE
Confidence            12234555555 555566655688899999875421 11100         111234455  78887776654 467799


Q ss_pred             EEECCC-CCc--ceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        148 LYNTRS-SSP--VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       148 v~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+++.. ++.  ...+........     +++.+ +++++++....+.|.+++.. ++.
T Consensus       193 ~~~~~~~g~~~~~~~~~~~~~P~g-----i~vd~-dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          193 RIPVDSTDKPGEPEIFVEQTNIDD-----FAFDV-EGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCCSS-----EEEBT-TCCEEEECBTTCCEEEECTT-CCE
T ss_pred             EEEeCCCCCCCccEEEeccCCCCC-----eEECC-CCCEEEEeCCCCeEEEECCC-CCE
Confidence            999875 321  111111112233     45555 68888887778899999875 544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.70  E-value=2.1e-06  Score=69.48  Aligned_cols=194  Identities=7%  Similarity=0.053  Sum_probs=120.8

Q ss_pred             eEEEEEeC-CCcEEEEeC-CCCceeeEEeccCC------------eeEEEEcCCCCc---EEEEecCCCEEEEEecCCcc
Q psy11351          8 KVLRVIGN-DDHVISHDM-ASGDPIDFYLHERP------------VYGLSVDPSQDA---IFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         8 ~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~------------v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~   70 (224)
                      ..+..++. ++.|.-+|. .+++.+..+.....            ...+++.|.+..   +++.++.|+.+..+|.++++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            45666676 899999999 89998877632211            123455443312   37778889999999999999


Q ss_pred             cceeeccCC----cCeEE-EEEcCCCCCeEEEec------CCCcEEEEecCCCceeeEeecCCCc---------------
Q psy11351         71 EATELAVNS----GPFHA-VMFNPVEARLVATAN------SKDGIALYDTRKPKEVLMQYGSCES---------------  124 (224)
Q Consensus        71 ~~~~~~~~~----~~i~~-~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~---------------  124 (224)
                      .+.......    ..+.+ -.+.  ++ .++.++      .++.|+-+|.++++.+..+......               
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             EEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            876654321    01111 1111  33 444443      3789999999999877665532111               


Q ss_pred             ----------------------e-eEEEEcCCCCeEeeeecC----------------CCcEEEECCCCCcceecccCCc
Q psy11351        125 ----------------------C-MSIRFNKAGTQLLGLRRR----------------LPPVLYNTRSSSPVAQFDHEGY  165 (224)
Q Consensus       125 ----------------------v-~~~~~~~~~~~l~~~~~d----------------~~v~v~d~~~~~~~~~~~~~~~  165 (224)
                                            + ..+++.+....++.+..+                +.|..+|.++|+.+..+....+
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 134666777777776554                3689999999998877732111


Q ss_pred             -c--cceeeeEEEEeC--CCC---eEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        166 -Y--NSCTMKSCCFAG--TQD---EYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       166 -~--~~~~~~~~~~~~--~~~---~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       .  ......++.+..  .++   ..++.++.+|.++++|..+|+..
T Consensus       300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence             0  001011111210  145   56888999999999999999885

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.69  E-value=3.7e-05  Score=57.28  Aligned_cols=188  Identities=11%  Similarity=0.010  Sum_probs=114.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCC----CceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          7 IKVLRVIGNDDHVISHDMAS----GDPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      +.++.+-...+.|..+++..    ........ .-.....+++.+.+.+++++-...+.|.+.+.........+......
T Consensus        42 ~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~  121 (316)
T 1ijq_A           42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  121 (316)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred             CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCC
Confidence            45555655678888888875    22222222 22456789998755467777777899999998754332223323346


Q ss_pred             eEEEEEcCCCCCeEEEecCC-CcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcce
Q psy11351         82 FHAVMFNPVEARLVATANSK-DGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~  158 (224)
                      ...++++|.++.++++.... +.|..+++... ....+. ..-.....+++++++..|+.+. ..+.|..+|+... ...
T Consensus       122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~  199 (316)
T 1ijq_A          122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRK  199 (316)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE
T ss_pred             cceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceE
Confidence            78999998455555554333 67888887633 222222 2345678999999877777665 4567999998743 333


Q ss_pred             ec-cc---CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        159 QF-DH---EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       159 ~~-~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+ ..   ......     +++.  .+.++++-...+.|..++..+++.
T Consensus       200 ~~~~~~~~~~~P~g-----iav~--~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          200 TILEDEKRLAHPFS-----LAVF--EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEECTTTTSSEEE-----EEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEeecCCccCCcEE-----EEEE--CCEEEEEECCCCeEEEEeCCCCcc
Confidence            33 21   112222     3332  467777777888999999877654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.63  E-value=8.2e-06  Score=65.83  Aligned_cols=150  Identities=12%  Similarity=0.007  Sum_probs=94.3

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccC-----CeeE-EEEcCCCCcEEEEecC------CCEEEEEecCCccccee
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHER-----PVYG-LSVDPSQDAIFASACD------DGRVLLFDTRSREEATE   74 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~-~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~   74 (224)
                      +..++.++.|+.+..+|..+++.+..+....     .+.+ .... ++  .++.++.      ++.|..+|.++++.+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            4467788889999999999999887663211     2221 1111 33  4444443      79999999999987766


Q ss_pred             eccCCcC--------------------------------------eEEEEEcCCCCCeEEEecCC---------------
Q psy11351         75 LAVNSGP--------------------------------------FHAVMFNPVEARLVATANSK---------------  101 (224)
Q Consensus        75 ~~~~~~~--------------------------------------i~~~~~~~~~~~~l~~~~~d---------------  101 (224)
                      +......                                      -..+++.+ ....++.++.+               
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCcee
Confidence            5432110                                      01345666 44455554432               


Q ss_pred             -CcEEEEecCCCceeeEeec--CC-------CceeEEEEcCCCC---eEeeeecCCCcEEEECCCCCcceec
Q psy11351        102 -DGIALYDTRKPKEVLMQYG--SC-------ESCMSIRFNKAGT---QLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       102 -g~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                       +.|..+|.++++....+..  |.       ....-+...++|+   .++.++.+|.++++|..+++.+..+
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence             3589999999987766542  21       1111122234674   5677888999999999999887665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.62  E-value=7.7e-05  Score=57.48  Aligned_cols=190  Identities=12%  Similarity=0.009  Sum_probs=115.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCC----ceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          7 IKVLRVIGNDDHVISHDMASG----DPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      +.++.+-...+.|+.+++...    ....... .......+++.+.+.+++++-...+.|.+.++........+...-..
T Consensus       124 ~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~  203 (400)
T 3p5b_L          124 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  203 (400)
T ss_dssp             TEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCC
T ss_pred             CceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCC
Confidence            344444445667777777642    2222332 34567889998855477777778889999998755433333333345


Q ss_pred             eEEEEEcCCCCCeEEEecC-CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCccee
Q psy11351         82 FHAVMFNPVEARLVATANS-KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~  159 (224)
                      ...++++|.++.++.+-.. .+.|...++............-.....+++++++..|+.+. ..+.|..+|+........
T Consensus       204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (400)
T 3p5b_L          204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  283 (400)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred             cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence            7899999944555554422 46788888864433222223335678999999888777765 356688888865433222


Q ss_pred             cccC---CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        160 FDHE---GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       160 ~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ....   .....+     +..  .+.++++-...+.|..+|..+++.
T Consensus       284 ~~~~~~l~~P~gl-----~v~--~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          284 LEDEKRLAHPFSL-----AVF--EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EECSSTTSSEEEE-----EEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EeCCCCCCCCEEE-----EEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence            2211   111222     222  567777777788999999777754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.62  E-value=6e-05  Score=56.22  Aligned_cols=183  Identities=6%  Similarity=-0.063  Sum_probs=116.9

Q ss_pred             CCcEEEEeCCCCc--eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc-eeeccCCcCeEEEEEcCCCC
Q psy11351         16 DDHVISHDMASGD--PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA-TELAVNSGPFHAVMFNPVEA   92 (224)
Q Consensus        16 dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~   92 (224)
                      ...|+..++....  .............++|++.+..++.+-...+.|..++...+... ..+...-.....+++.+.++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            5689999998764  22223334457789999865467777777889999998765422 22222223456788887466


Q ss_pred             CeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceecccCCccccee
Q psy11351         93 RLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQFDHEGYYNSCT  170 (224)
Q Consensus        93 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~~~~~~~~~~~  170 (224)
                      .++++-...+.|.++++..................++++|.+..|+....  .+.|...++... ....+...+ +.  .
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~-l~--~  167 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSE-IY--W  167 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSS-CS--C
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECC-CC--C
Confidence            67777677789999998754322222244456789999998777666652  466777777533 222321111 11  1


Q ss_pred             eeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        171 MKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      -..++++|.++.++++=+..+.|..+|+....
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence            23467777566777777778899999987543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.62  E-value=1.8e-05  Score=56.87  Aligned_cols=166  Identities=8%  Similarity=0.116  Sum_probs=112.0

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc-CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV-NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      +-...+..++|+|++..++++...++.|...|.. ++.++.+.- .......+++.+ ++.++++.-.++.+.++++...
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence            3446799999999875677778889999999987 776666532 124578888888 7777677667788999988654


Q ss_pred             cee---eEee------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC---CCcceeccc---CCcccceeeeEEEEe
Q psy11351        113 KEV---LMQY------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS---SSPVAQFDH---EGYYNSCTMKSCCFA  177 (224)
Q Consensus       113 ~~~---~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~---~~~~~~~~~---~~~~~~~~~~~~~~~  177 (224)
                      ...   ....      ........++|+|.++.|+++.......+|....   ...+.....   .....-..++.+.+.
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence            321   1111      1334568999999998888877766656666541   111222111   011111235678899


Q ss_pred             CCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        178 GTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       178 ~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      |..+.+++.....+.|.++|....
T Consensus       182 p~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          182 QQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCC
T ss_pred             CCCCeEEEEECCCCeEEEEcCCCC
Confidence            988888888888899999997644

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.59  E-value=0.0001  Score=61.57  Aligned_cols=184  Identities=9%  Similarity=-0.023  Sum_probs=118.5

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc----ccceeeccCCcCeEEEEEcCC
Q psy11351         15 NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR----EEATELAVNSGPFHAVMFNPV   90 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~   90 (224)
                      ....|+..++...+...+......+..++|++.+..++++-...+.|+.+++...    .....+.........|++.+.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            3467888998877766666556778899999865467777777889999998753    222233323345678899874


Q ss_pred             CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceeccc-CCccc
Q psy11351         91 EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQFDH-EGYYN  167 (224)
Q Consensus        91 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~~~-~~~~~  167 (224)
                      +++++++-...+.|.+.++........+.........|+++|.+.+|+....  .+.|...++........+.. -...+
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence            5577777778889999998755433333344456889999998777766653  25677788764333222221 12223


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .     +++.+..+.++++-...+.|..+++.....
T Consensus       562 G-----LavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          562 G-----ITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             E-----EEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             E-----EEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            3     555554566666666677888888866544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=1.5e-05  Score=64.42  Aligned_cols=164  Identities=13%  Similarity=0.130  Sum_probs=101.4

Q ss_pred             CcEEEEeCCCCceeeEEe---cc--------CCeeEEEEc-CCCC--cEEEEecCCCEEEEEecCCcccceeeccCC---
Q psy11351         17 DHVISHDMASGDPIDFYL---HE--------RPVYGLSVD-PSQD--AIFASACDDGRVLLFDTRSREEATELAVNS---   79 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~---~~--------~~v~~~~~~-~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---   79 (224)
                      +.|.-+|.++++.+..+.   |.        .++. +... .+|.  ..++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            689999999999887763   32        1221 2221 3452  378889999999999999998765543221   


Q ss_pred             ----------cC--------------------------------eEEEEEcCCCCCeEEEe-------------------
Q psy11351         80 ----------GP--------------------------------FHAVMFNPVEARLVATA-------------------   98 (224)
Q Consensus        80 ----------~~--------------------------------i~~~~~~~~~~~~l~~~-------------------   98 (224)
                                .+                                -..++++|..+.+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      00                                01345666333333321                   


Q ss_pred             -------------cCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCc
Q psy11351         99 -------------NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGY  165 (224)
Q Consensus        99 -------------~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~  165 (224)
                                   ..+|.|.-||+.+++......... ++..-.....+..++.++.|+.++.||.++|+.+.++.....
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g  528 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence                         135789999999998766554321 222111222467788899999999999999999998854444


Q ss_pred             ccceeeeEEEEeCCCCe-EEEE
Q psy11351        166 YNSCTMKSCCFAGTQDE-YVVS  186 (224)
Q Consensus       166 ~~~~~~~~~~~~~~~~~-~l~s  186 (224)
                      +..   .++.|.. +++ |+++
T Consensus       529 ~~a---~P~~y~~-~G~qYv~~  546 (582)
T 1flg_A          529 IVS---PPITWEQ-DGEQYLGV  546 (582)
T ss_dssp             CCS---CCEEEEE-TTEEEEEE
T ss_pred             ccc---CceEEEE-CCEEEEEE
Confidence            332   2344433 555 4443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.53  E-value=9e-05  Score=53.27  Aligned_cols=188  Identities=9%  Similarity=0.095  Sum_probs=113.4

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc---eeec----
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA---TELA----   76 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~----   76 (224)
                      .+.++++...++.|...|.. ++.++.+  +-......+++.+++ .++++.-.++.+.++++.....+   ....    
T Consensus        38 ~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~  115 (255)
T 3qqz_A           38 SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ  115 (255)
T ss_dssp             TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS
T ss_pred             CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc
Confidence            45677778888999999998 7777766  223578889999887 67677667789999987654421   1111    


Q ss_pred             --cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC---CCceeeEee-------cCCCceeEEEEcCCCC-eEeeeecC
Q psy11351         77 --VNSGPFHAVMFNPVEARLVATANSKDGIALYDTR---KPKEVLMQY-------GSCESCMSIRFNKAGT-QLLGLRRR  143 (224)
Q Consensus        77 --~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~---~~~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~d  143 (224)
                        ........++|+| .+..|.++.......+|.+.   .........       .......+++++|... +++....+
T Consensus       116 ~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s  194 (255)
T 3qqz_A          116 ESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES  194 (255)
T ss_dssp             SCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred             cccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCC
Confidence              2234578999999 55455555454444555543   111111111       1334578999999754 55555566


Q ss_pred             CCcEEEECCCCCcceecccCCcccc-----eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNS-----CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +.+.++|.. ++.+..+........     -...-+++.+ +++++++ ++...++.|.-.
T Consensus       195 ~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          195 RALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             TEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC-
T ss_pred             CeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEec
Confidence            778888865 555554432211100     1233467777 6776555 666677777543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=1.3e-05  Score=62.49  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=90.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCc-EEEEecCCC----EEEEEecCCcccc--eeeccCCc
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDA-IFASACDDG----RVLLFDTRSREEA--TELAVNSG   80 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~----~i~iwd~~~~~~~--~~~~~~~~   80 (224)
                      ..|..+...+.|+.+|+++++.............++|++++ + ++++-..++    .+...+ ..+...  ..+.. ..
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~  226 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQ  226 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CS
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CC
Confidence            34444444488999999887665555555678899999998 6 444443222    343344 333322  22222 23


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTR  152 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~  152 (224)
                      ....++++|.++.++++-..++.|..+|........... ........++|+|+|++|+.+. ..+.|..++..
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            356788999666777777678899999988664322222 2234567899999999666554 56678887765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.52  E-value=2.8e-06  Score=70.15  Aligned_cols=181  Identities=9%  Similarity=-0.009  Sum_probs=110.8

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC----cccceeeccCCcCeEEEEEcCC
Q psy11351         15 NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS----REEATELAVNSGPFHAVMFNPV   90 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~~   90 (224)
                      ..+.|+..++.+.+..........+..++|++.+..++++-...+.|+.+++..    ......+.........+++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            346788888887766555544456778999987645555656678999999875    2222222221223456888864


Q ss_pred             CCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceec-c-cCCcc
Q psy11351         91 EARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQF-D-HEGYY  166 (224)
Q Consensus        91 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~-~-~~~~~  166 (224)
                      +++++++-...+.|.++++........+.........++++|.+.+|+.+..  .+.|..+++.... ...+ . .-...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence            6677777667788999998754332222222345678899997766665543  2567777665332 2222 1 11122


Q ss_pred             cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        167 NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +.     ++++|.++.++++-+..+.|..+++...
T Consensus       543 nG-----lavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          543 NG-----ITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CC-----EEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             cE-----EEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            33     6666655677777777889999998654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.50  E-value=0.00014  Score=54.17  Aligned_cols=189  Identities=6%  Similarity=-0.057  Sum_probs=113.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceee-EE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPID-FY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      +.++.+-...+.|..++++.+.... .. ..-.....+++.+.+.+++++-...+.|.++++........+......-..
T Consensus        47 ~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~g  126 (318)
T 3sov_A           47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA  126 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccE
Confidence            3444444455667777776553221 22 222456788888755467777777889999998654322222233445689


Q ss_pred             EEEcCCCCCeEEEec-CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceec-c
Q psy11351         85 VMFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQF-D  161 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~-~  161 (224)
                      ++++|.++.++.+-. ..+.|..+++............-.....++++|++..|+.+. ..+.|..+|+.... ...+ .
T Consensus       127 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~  205 (318)
T 3sov_A          127 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK  205 (318)
T ss_dssp             EEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC
T ss_pred             EEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec
Confidence            999984444444432 357788888763322222222334568999999877777664 45678888886433 2333 2


Q ss_pred             -cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 -HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       .......     +++.  .+.++.+-...+.|..++..+++.
T Consensus       206 ~~~~~P~g-----lav~--~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          206 GSLPHPFA-----LTLF--EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             SCCSCEEE-----EEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCCceE-----EEEe--CCEEEEEecCCCeEEEEECCCCCc
Confidence             1222222     2232  457777777788999999877764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.49  E-value=0.00035  Score=58.44  Aligned_cols=192  Identities=11%  Similarity=0.014  Sum_probs=115.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCC----ceeeEEe-ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          7 IKVLRVIGNDDHVISHDMASG----DPIDFYL-HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      +.++++-...+.|+.+++...    .....+. .......|++.+.+.+++++-...+.|.+.++........+......
T Consensus       436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~  515 (791)
T 3m0c_C          436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  515 (791)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred             CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence            344445455566777776642    2222232 34566789998877577778788899999998754433333333445


Q ss_pred             eEEEEEcCCCCCeEEEecCC-CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCCcEEEECCCCCccee
Q psy11351         82 FHAVMFNPVEARLVATANSK-DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~~~~~~~  159 (224)
                      ...|+++|..+.++++-... +.|...++............-.....|++++.+..|+.+.. .+.|..+++........
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence            78999999445555554333 67888888744332233333457889999988777777653 45688888865433332


Q ss_pred             cccCCcc-cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        160 FDHEGYY-NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       160 ~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +...... ..+.   ++..  .+.++++-...+.|...+..+++.
T Consensus       596 ~~~~~~l~~P~g---lav~--~~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          596 LEDEKRLAHPFS---LAVF--EDKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             EECTTTTSSEEE---EEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ecCCCccCCCCE---EEEe--CCEEEEEECCCCEEEEEeCCCCcc
Confidence            2211111 1111   2222  456777777788999888777754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.49  E-value=2.3e-05  Score=65.32  Aligned_cols=188  Identities=9%  Similarity=0.016  Sum_probs=102.7

Q ss_pred             CC-CcceEEEEEeC-CC----cEEEEeCCCC-ceeeEEeccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcc
Q psy11351          3 SG-DPIKVLRVIGN-DD----HVISHDMASG-DPIDFYLHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSRE   70 (224)
Q Consensus         3 ~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~   70 (224)
                      ++ ++|++||-+.. +|    +|+++|+.++ +.+... .......+.|+|++ +.|+....|     ..|..+++.+++
T Consensus       181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg-~~l~y~~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDH-TSLFYVTKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSST-TEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred             ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCC-CEEEEEEECCCCCCCEEEEEECCCCc
Confidence            35 67787774433 33    4999999998 632211 11124578999998 555544443     368888887765


Q ss_pred             cc--eeec-cCCcCeEEEEEcCCCCCeEEEec---CCCcEEEEecCCCc-ee--eEeec-CCCceeEEEEcCCCCeEeee
Q psy11351         71 EA--TELA-VNSGPFHAVMFNPVEARLVATAN---SKDGIALYDTRKPK-EV--LMQYG-SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        71 ~~--~~~~-~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~-~~--~~~~~-~~~~v~~~~~~~~~~~l~~~  140 (224)
                      ..  ..+. ........+.|+| ++++|+..+   ....|.++|+.++. ..  ..+.. ......++.|+..+.+++..
T Consensus       259 ~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t  337 (751)
T 2xe4_A          259 SEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILT  337 (751)
T ss_dssp             GGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEE
T ss_pred             hhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEe
Confidence            32  2222 2233467889999 777766544   23458888988652 22  33332 33455556655444444444


Q ss_pred             ecC--C--CcEEEECCCC-Ccce-ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCe--EEEEeC
Q psy11351        141 RRR--L--PPVLYNTRSS-SPVA-QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV--LYMWRV  198 (224)
Q Consensus       141 ~~d--~--~v~v~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--v~iw~~  198 (224)
                      ..+  +  .|..+++.++ +... .+.+...+   .+..+.+.  ++.++++...++.  |.++++
T Consensus       338 ~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~---~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          338 NEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDV---FMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CTTTCTTCEEEEEETTSTTCCCCEEECCCSSE---EEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCCCCCcEEEEEcCCCcccceeeEECCCCCc---EEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            333  2  4666666543 2222 23332221   22223333  4566677777775  455564

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.48  E-value=0.00031  Score=57.31  Aligned_cols=192  Identities=7%  Similarity=-0.032  Sum_probs=121.4

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFH   83 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~   83 (224)
                      +..+|+-+ ....|+..++++.+.....  ..-..+..++|++.+..++.+-..++.|..+++........+........
T Consensus         5 p~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            5 PEAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             CCCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             CCcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            33455554 5678999999876544333  23356889999997756677777789999999875443333332223467


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceecc
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~~  161 (224)
                      .+++++.+++++++-...+.|.+.++............-.....++++|....|+....  .+.|...++..........
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~  163 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP  163 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence            88888745667777777888999998754322222234456789999997666666542  4556667765443322222


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .-...+.     +++.+..+.++++-...+.|..+++.....
T Consensus       164 ~~~~P~G-----lalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          164 NVGRANG-----LTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             SCSSEEE-----EEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCcce-----EEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            1122222     555554456666666778888888876543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=3e-05  Score=60.41  Aligned_cols=190  Identities=10%  Similarity=0.054  Sum_probs=109.2

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC---CE-EEEEecCCcccc--eeeccCCc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD---GR-VLLFDTRSREEA--TELAVNSG   80 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~-i~iwd~~~~~~~--~~~~~~~~   80 (224)
                      ++++++ ...+.|+.+|..+++.............+++++++ +++++-...   .. +...+.. +...  ..+. .-.
T Consensus       153 g~Lyv~-D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~-~~~  228 (433)
T 4hw6_A          153 DDLYWV-GQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLC-NAR  228 (433)
T ss_dssp             CEEEEE-CBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGG-GTTCCEEEEE-ECS
T ss_pred             CEEEEE-eCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECC-CCeecccccc-ccC
Confidence            554444 33388999999887776655555678999999999 555554321   22 3333322 2211  1111 123


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCC--CC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRS--SS  155 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~--~~  155 (224)
                      ....++++|.++.++++-..++.|+.+|..++.....+.  ........++|+|++++|+.+. ..+.|+.++...  +.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~  308 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK  308 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence            346788888556666676677889999988665422222  1222335699999999666654 456788877652  32


Q ss_pred             cc--eec-cc---CCccc------ce-eeeEEEE---------eCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        156 PV--AQF-DH---EGYYN------SC-TMKSCCF---------AGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       156 ~~--~~~-~~---~~~~~------~~-~~~~~~~---------~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ..  ..+ ..   .+...      .+ .-..+++         .+ ++.++++-...+.|+.++. ++.
T Consensus       309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSE
T ss_pred             cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCC
Confidence            11  111 11   01000      00 0122555         33 5677777777888988884 443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.42  E-value=0.00023  Score=53.29  Aligned_cols=184  Identities=8%  Similarity=0.103  Sum_probs=112.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCC----CCc--E-EEEecC--CCEEEEEecC--Ccccceeec
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPS----QDA--I-FASACD--DGRVLLFDTR--SREEATELA   76 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-l~s~~~--d~~i~iwd~~--~~~~~~~~~   76 (224)
                      .+++.....+-+.+||+ +++.+..+.. +.++.+..-|.    +..  + +++.-.  +++|.+|++.  +++ +..+.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~  117 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT  117 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence            45666677889999999 7777776633 56777776652    111  2 334444  5899999773  332 33331


Q ss_pred             c------CC-cCeEEEEE--cCCCCC-eEEEecCCCcEEEEecCC---C----ceeeEeecCCCceeEEEEcCCCCeEee
Q psy11351         77 V------NS-GPFHAVMF--NPVEAR-LVATANSKDGIALYDTRK---P----KEVLMQYGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        77 ~------~~-~~i~~~~~--~~~~~~-~l~~~~~dg~v~i~d~~~---~----~~~~~~~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      .      .. ..+..+++  +|..+. +++....+|.+..|++..   +    +.+..+ .-.+.+..+...+....|+.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCCeEEE
Confidence            1      11 45666777  664443 677778889999998842   2    223333 34567889999999999999


Q ss_pred             eecCCCcEEEECC-----CCCcceecccC---CcccceeeeEEEEeCCCCe-EEEEcC-CCCeEEEEeCC
Q psy11351        140 LRRRLPPVLYNTR-----SSSPVAQFDHE---GYYNSCTMKSCCFAGTQDE-YVVSGS-DDFVLYMWRVP  199 (224)
Q Consensus       140 ~~~d~~v~v~d~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~l~s~~-~d~~v~iw~~~  199 (224)
                      +-++.-|..++.+     +++.+..+...   ..+..+++..   .+ +++ +|++.+ .+..+.+||..
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~-~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AA-DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cC-CCCEEEEEEcCCCCEEEEEECC
Confidence            9888666666744     23344333222   2333333321   12 233 554444 67799999997

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.38  E-value=2.5e-05  Score=64.10  Aligned_cols=193  Identities=12%  Similarity=0.076  Sum_probs=107.6

Q ss_pred             cceEEEEEeCCC-----------cEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEec-CCCEEEEEecCCc
Q psy11351          6 PIKVLRVIGNDD-----------HVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASAC-DDGRVLLFDTRSR   69 (224)
Q Consensus         6 ~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~   69 (224)
                      .+++++.|+.+.           .+.+||..+++.....    .+.....++++.+++ ++++.|+ .+..+.+||..++
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGT
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceEEecCcCC
Confidence            678888887543           5889999988754432    233344457788888 7888887 4568999999876


Q ss_pred             ccce--eeccCCcCeEEEEEcCCCCCeEEEec-CC-----CcEEEEecCCCceeeEee-----cCCCceeEEEEcCCCCe
Q psy11351         70 EEAT--ELAVNSGPFHAVMFNPVEARLVATAN-SK-----DGIALYDTRKPKEVLMQY-----GSCESCMSIRFNKAGTQ  136 (224)
Q Consensus        70 ~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----g~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~  136 (224)
                      +-..  .+... ..-.+++..+ ++++++.|+ .+     ..+.+||..+.+-. .+.     .....-....+..++..
T Consensus       276 ~W~~~~~~~~~-R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~~~~~~~~p~~~~~~~~~~~~~~~i  352 (656)
T 1k3i_A          276 SWIPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYRSDNHA  352 (656)
T ss_dssp             EEEECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGTTTCSC
T ss_pred             ceeECCCCCcc-ccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcce-eCCCccccccccccccceeecCCce
Confidence            5322  22211 1223455666 678888887 34     46899999876422 211     00000000122344555


Q ss_pred             EeeeecCC---------CcEEEECCCCCcceecc-cCC----cccceeeeEEEEeCCCCeEEEEcCCCC-----------
Q psy11351        137 LLGLRRRL---------PPVLYNTRSSSPVAQFD-HEG----YYNSCTMKSCCFAGTQDEYVVSGSDDF-----------  191 (224)
Q Consensus       137 l~~~~~d~---------~v~v~d~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~l~s~~~d~-----------  191 (224)
                      ++.++.++         .+..||..+........ ...    ......-..+.+...++.+++.|+.++           
T Consensus       353 yv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~  432 (656)
T 1k3i_A          353 WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAH  432 (656)
T ss_dssp             CEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEE
T ss_pred             EEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcce
Confidence            55554443         36778887654332221 110    000001112333333688888888543           


Q ss_pred             eEEEEeCCCCC
Q psy11351        192 VLYMWRVPRDD  202 (224)
Q Consensus       192 ~v~iw~~~~~~  202 (224)
                      .+.+||..+.+
T Consensus       433 ~v~~yd~~~~~  443 (656)
T 1k3i_A          433 IITLGEPGTSP  443 (656)
T ss_dssp             EEECCSTTSCC
T ss_pred             EEEcCCCCCCC
Confidence            67888877654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.37  E-value=1.7e-05  Score=66.20  Aligned_cols=112  Identities=9%  Similarity=-0.009  Sum_probs=72.5

Q ss_pred             CeeEEEEc-CCCCcEEE-EecC----CCEEEEEecCCc-ccce-eeccCCcCeEEEEEcCCCCCeEEEecCC-----CcE
Q psy11351         38 PVYGLSVD-PSQDAIFA-SACD----DGRVLLFDTRSR-EEAT-ELAVNSGPFHAVMFNPVEARLVATANSK-----DGI  104 (224)
Q Consensus        38 ~v~~~~~~-~~~~~~l~-s~~~----d~~i~iwd~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v  104 (224)
                      .+...+|+ |+| ++|+ +...    ..+|+++|+.++ +.+. .+.   .....++|+| +++.|+....+     ..|
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEE
Confidence            57889999 999 5655 3332    246999999988 6321 121   1134688999 66666555443     257


Q ss_pred             EEEecCCCcee--eEee-cCCCceeEEEEcCCCCeEeeeec---CCCcEEEECCCC
Q psy11351        105 ALYDTRKPKEV--LMQY-GSCESCMSIRFNKAGTQLLGLRR---RLPPVLYNTRSS  154 (224)
Q Consensus       105 ~i~d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~d~~~~  154 (224)
                      .++++.+++..  ..+. ........+.|+|||++|+..+.   ...|+++|+.++
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            88888766422  2222 23345677899999998887653   335888898875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.36  E-value=0.00033  Score=52.01  Aligned_cols=145  Identities=10%  Similarity=0.038  Sum_probs=100.3

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-ec-----c--CCeeEEEE---cCCCCcEEEEec-------------CCCEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LH-----E--RPVYGLSV---DPSQDAIFASAC-------------DDGRV   61 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-----~--~~v~~~~~---~~~~~~~l~s~~-------------~d~~i   61 (224)
                      .+.++++.-..++|..||...+...... ..     .  ..+..+.|   .|++ .++++..             .+..+
T Consensus        24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v  102 (334)
T 2p9w_A           24 RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSF  102 (334)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred             CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEE
Confidence            3556666668999999999866544332 21     1  13689999   5886 6776533             26789


Q ss_pred             EEEecC---Ccccceeec--c-----------CCcCeEEEEEcCCCCCeEEEecCC-CcEEEEecCCCceeeEee-c---
Q psy11351         62 LLFDTR---SREEATELA--V-----------NSGPFHAVMFNPVEARLVATANSK-DGIALYDTRKPKEVLMQY-G---  120 (224)
Q Consensus        62 ~iwd~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~-~---  120 (224)
                      ..+|+.   +++.+....  .           .......++..+ +++..++++.. +.|...+.... ....+. .   
T Consensus       103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~  180 (334)
T 2p9w_A          103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK-TVSTFAWESGN  180 (334)
T ss_dssp             EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCC
T ss_pred             EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCC
Confidence            999999   777654432  1           113488999999 88999988887 88777776533 222222 1   


Q ss_pred             --CCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351        121 --SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus       121 --~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                        .....+.++++|+|..|++....+.+..+|+.+
T Consensus       181 ~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          181 GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence              122367899999999888887799999999884

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.35  E-value=1.1e-05  Score=66.70  Aligned_cols=190  Identities=11%  Similarity=0.010  Sum_probs=109.1

Q ss_pred             eEEEEEeCCCcEEEEeCCC----CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          8 KVLRVIGNDDHVISHDMAS----GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~----~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      .++++-...+.|+.+++.+    ......+ ........+++.+.+.+++++-...+.|.++++........+.......
T Consensus       419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P  498 (699)
T 1n7d_A          419 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKP  498 (699)
T ss_dssp             EEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCC
T ss_pred             eEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCc
Confidence            3444444567788888765    2222222 1123456788886554666766677899999987544333332222345


Q ss_pred             EEEEEcCCCCCeEEEecCC-CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceec
Q psy11351         83 HAVMFNPVEARLVATANSK-DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~  160 (224)
                      ..++++|.++.++++-... +.|..+++............-.....|+|+|++..|+.+. ..+.|..+++........+
T Consensus       499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  578 (699)
T ss_dssp             CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred             ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence            7889998455555554333 6788887753322111122234567899999877666654 4567888888643322222


Q ss_pred             ccC---CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        161 DHE---GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       161 ~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...   .....+++     .  .+.++++....+.|..++..+++..
T Consensus       579 ~~~~~~~~P~glav-----d--~~~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          579 EDEKRLAHPFSLAV-----F--EDKVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             CCSSSCSSCCCCEE-----E--TTEEEEECSTTTCEEEEETTTEEEE
T ss_pred             ecCCcCCCceEeEE-----E--CCEEEEEeCCCCeEEEEEccCCCce
Confidence            211   22223332     2  3467777777889999998777653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=9.6e-05  Score=58.21  Aligned_cols=145  Identities=8%  Similarity=-0.023  Sum_probs=90.8

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEec----cCCeeEEEE-------cCCCCcEEEEecCCC-------EEEEEecC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLH----ERPVYGLSV-------DPSQDAIFASACDDG-------RVLLFDTR   67 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~~l~s~~~d~-------~i~iwd~~   67 (224)
                      .++++++-...+.|++.|++++.......-    ......++|       ++++ ..|+.+...+       .|.+.+..
T Consensus       151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~~~~~V~~i~r~  229 (496)
T 3kya_A          151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGDESPSVYIIKRN  229 (496)
T ss_dssp             EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGGGEEEEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcccCceEEEEecC
Confidence            455555555557799999998777665522    235899999       9998 5444444332       36666643


Q ss_pred             C-cccc-----eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC-------CCce-----------eeEee--cC
Q psy11351         68 S-REEA-----TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR-------KPKE-----------VLMQY--GS  121 (224)
Q Consensus        68 ~-~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~-------~~~~-----------~~~~~--~~  121 (224)
                      . ++..     ..+... .....++++|.++.++++-..++.|..+|+.       ++..           ...+.  ..
T Consensus       230 ~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~  308 (496)
T 3kya_A          230 ADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD  308 (496)
T ss_dssp             TTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred             CCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence            3 2221     222221 2345778899667777777788889999987       4432           11211  23


Q ss_pred             CCceeEEEEcCCCCeEeeee-cCCCcEEEECC
Q psy11351        122 CESCMSIRFNKAGTQLLGLR-RRLPPVLYNTR  152 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~  152 (224)
                      ......++|+|+|++|+.+. ....|+.++..
T Consensus       309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            34568899999999766654 45667776553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=0.00016  Score=53.45  Aligned_cols=150  Identities=11%  Similarity=-0.015  Sum_probs=88.0

Q ss_pred             CCCCcceEEEEEeCCC--cEEEEeCCCCceeeEEec--cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cce---
Q psy11351          2 ASGDPIKVLRVIGNDD--HVISHDMASGDPIDFYLH--ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EAT---   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~---   73 (224)
                      +.+.+++++++.....  .|..+|..+++.......  ......++..+.+ ..+++-..++.|..+|...++ .+.   
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~  156 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEH  156 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence            4556677655554322  466777777776544322  2234555555554 556666668899999976542 111   


Q ss_pred             ------eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCC-Cce--eeEeecCCCceeEEEEcCCCCeEeeeecCC
Q psy11351         74 ------ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRK-PKE--VLMQYGSCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        74 ------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                            .....-...+.+  +++++.++++-...+.|..||+.. ++.  ...+. .......++++++|+++++....+
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTC
T ss_pred             CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCC
Confidence                  000111233455  663344566666778999999874 211  11111 113456789999998777766778


Q ss_pred             CcEEEECCCCCc
Q psy11351        145 PPVLYNTRSSSP  156 (224)
Q Consensus       145 ~v~v~d~~~~~~  156 (224)
                      .|.++|.. ++.
T Consensus       234 ~V~~~~~~-G~~  244 (306)
T 2p4o_A          234 SVVRIAPD-RST  244 (306)
T ss_dssp             CEEEECTT-CCE
T ss_pred             eEEEECCC-CCE
Confidence            89999975 554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.27  E-value=0.0011  Score=55.55  Aligned_cols=182  Identities=9%  Similarity=0.031  Sum_probs=111.4

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEE-e--------ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec----
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFY-L--------HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA----   76 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~-~--------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----   76 (224)
                      |-.|+.++-|..||..+++..... .        ....|.++...+++ ++|..|+.++-|..||.++++......    
T Consensus       370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~  448 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQ  448 (795)
T ss_dssp             EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred             EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence            455677777999998877655432 1        13578999988887 645667776779999988765322211    


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-------CCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-------SCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      .....|.++...+ ++.+.+.. . +.+.+||..+++. ..+..       ....|.++...++|...+... + -+..|
T Consensus       449 l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~  522 (795)
T 4a2l_A          449 LVNENVYAILPDG-EGNLWLGT-L-SALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVF  522 (795)
T ss_dssp             CSCSCEEEEEECS-SSCEEEEE-S-SCEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEE
T ss_pred             cCCCeeEEEEECC-CCCEEEEe-c-CceeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEE
Confidence            1245789999887 66655554 4 4588899876533 22221       235788999988887666544 4 48999


Q ss_pred             ECCCCCcceecc---cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        150 NTRSSSPVAQFD---HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       150 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      |..+++.  .+.   .......-.+..+...+ ++.+.++. .+ -+..||..+++.
T Consensus       523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT-~~-Gl~~~d~~~~~~  574 (795)
T 4a2l_A          523 KQEGLDI--QKASILPVSNVTKLFTNCIYEAS-NGIIWVGT-RE-GFYCFNEKDKQI  574 (795)
T ss_dssp             EEETTEE--EECCCSCSCGGGGSCEEEEEECT-TSCEEEEE-SS-CEEEEETTTTEE
T ss_pred             eCCCCeE--EEecCCCCCCCCCCeeEEEEECC-CCCEEEEe-CC-CceeECCCCCcE
Confidence            9876654  221   11111112233344444 45544433 33 477888766543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.26  E-value=0.00021  Score=53.09  Aligned_cols=161  Identities=9%  Similarity=0.120  Sum_probs=102.9

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eecc----CC--cCeEEEEE---cCCCCCeEEEec-------
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAV----NS--GPFHAVMF---NPVEARLVATAN-------   99 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~----~~--~~i~~~~~---~~~~~~~l~~~~-------   99 (224)
                      ....+++|++....++++.-..++|..||...+.... .+..    ..  ..+..+.|   .| +++++++..       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence            3456789988653566666689999999987554322 2221    11  13579999   68 677777543       


Q ss_pred             ------CCCcEEEEecC---CCceeeEee--c-----------CCCceeEEEEcCCCCeEeeeecC-CCcEEEECCCCCc
Q psy11351        100 ------SKDGIALYDTR---KPKEVLMQY--G-----------SCESCMSIRFNKAGTQLLGLRRR-LPPVLYNTRSSSP  156 (224)
Q Consensus       100 ------~dg~v~i~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~~~~d-~~v~v~d~~~~~~  156 (224)
                            .+..|..||+.   +++......  .           .......++..++|+..++++.. +.|...+.... .
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence                  26779999999   665544332  1           11347889999999999988877 77666665533 3


Q ss_pred             ceec--ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        157 VAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       157 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      +..+  ..........+.-+.+.| ++..|++...+|.|.-+|+..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence            3332  111111222234467777 576666655599999999884

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.23  E-value=0.00062  Score=57.16  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=109.5

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEe-------ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec------
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYL-------HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA------   76 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------   76 (224)
                      +-.|+.++-|..++..+++......       ....|.++...+++ + |-.|+.++-|..||..+++......      
T Consensus       323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred             EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence            4556666778888876654332221       24569999998887 4 4446667778889987665322211      


Q ss_pred             --cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-----CCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         77 --VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-----SCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        77 --~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                        .....|.++...+ ++.+|..|+.++.+..||.++++. ..+..     ....|.++...++|...+.. .+| +.+|
T Consensus       401 ~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~  476 (795)
T 4a2l_A          401 RGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRF  476 (795)
T ss_dssp             -CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEE
T ss_pred             cCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEE
Confidence              1135789999887 666466667777899999887643 22221     24578899988888765544 344 9999


Q ss_pred             ECCCCCcceecccC---CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        150 NTRSSSPVAQFDHE---GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       150 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      |..+++.. .+...   .......+..+...+ ++.+.+.. . +-|..||..+++
T Consensus       477 ~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~  528 (795)
T 4a2l_A          477 NPEQRSFT-TIEKEKDGTPVVSKQITTLFRDS-HKRLWIGG-E-EGLSVFKQEGLD  528 (795)
T ss_dssp             ETTTTEEE-ECCBCTTCCBCCCCCEEEEEECT-TCCEEEEE-S-SCEEEEEEETTE
T ss_pred             eCCCCeEE-EccccccccccCCceEEEEEECC-CCCEEEEe-C-CceEEEeCCCCe
Confidence            98765432 22111   111111233344444 45554433 3 447778776554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.20  E-value=0.00014  Score=59.75  Aligned_cols=181  Identities=13%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             CcceEEEEEeC-CCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEec-CC-----CEEEEEecCCccccee-
Q psy11351          5 DPIKVLRVIGN-DDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASAC-DD-----GRVLLFDTRSREEATE-   74 (224)
Q Consensus         5 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~-   74 (224)
                      .++++++.|+. +..+.+||..+++....-  .....-.++...+++ ++++.|+ .+     ..+.+||..+++-... 
T Consensus       252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~  330 (656)
T 1k3i_A          252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  330 (656)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCC
Confidence            45778888884 558999999877654332  112222345666777 7888887 34     5688999876542110 


Q ss_pred             ------ec------------------cCCc---------------------------------------CeEEEEEcCCC
Q psy11351         75 ------LA------------------VNSG---------------------------------------PFHAVMFNPVE   91 (224)
Q Consensus        75 ------~~------------------~~~~---------------------------------------~i~~~~~~~~~   91 (224)
                            +.                  +..+                                       .-.++.+...+
T Consensus       331 ~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~  410 (656)
T 1k3i_A          331 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK  410 (656)
T ss_dssp             TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred             CccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC
Confidence                  00                  0000                                       11233333335


Q ss_pred             CCeEEEecCCC-----------cEEEEecCCCceeeEe--e-cCCCceeEEEEcCCCCeEeeeecC-----------CCc
Q psy11351         92 ARLVATANSKD-----------GIALYDTRKPKEVLMQ--Y-GSCESCMSIRFNKAGTQLLGLRRR-----------LPP  146 (224)
Q Consensus        92 ~~~l~~~~~dg-----------~v~i~d~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d-----------~~v  146 (224)
                      +++++.|+.++           .+.+||..+..-....  . .....-.++...|+++.++.|+.+           ..+
T Consensus       411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v  490 (656)
T 1k3i_A          411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP  490 (656)
T ss_dssp             TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred             CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence            67788877532           5778887765432221  1 112222445667899999998754           458


Q ss_pred             EEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        147 VLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       147 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                      .+||..+.+-...-..  .........+.+.| ++++++.|+.
T Consensus       491 ~~ydp~t~~W~~~~~~--~~~R~~hs~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          491 EIYVPEQDTFYKQNPN--SIVRVYHSISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             EEEEGGGTEEEECCCC--SSCCCTTEEEEECT-TSCEEEEECC
T ss_pred             EEEcCCCCceeecCCC--CCccccccHhhcCC-CcEEEecCCC
Confidence            9999876542221111  11111122233445 7889888885

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.13  E-value=0.0022  Score=52.38  Aligned_cols=188  Identities=9%  Similarity=-0.081  Sum_probs=117.6

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEec-cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLH-ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +.++.+-..++.|+.++++.......... ......+++.+.+.+++++-...+.|.+.++........+...-..-..+
T Consensus        49 ~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~i  128 (628)
T 4a0p_A           49 NRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL  128 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccE
Confidence            44555555677788888765544433322 24577889887665777777778999999986543222222333456899


Q ss_pred             EEcCCCCCeEEEe-cCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceec-cc
Q psy11351         86 MFNPVEARLVATA-NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        86 ~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      +++|..+.++.+- +..+.|...++.... ...+...-.....++++++++.|+.+. ..+.|..+|+..... ..+ ..
T Consensus       129 avdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~  206 (628)
T 4a0p_A          129 ALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD  206 (628)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC
T ss_pred             EEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc
Confidence            9998455555543 225677777776443 333334456678999999877777765 456788888875443 333 21


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ......     +++.  .+.++++-...+.|...|..+++.
T Consensus       207 l~~P~g-----lav~--~~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          207 LPHPFG-----LTQY--QDYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             CSCEEE-----EEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCceE-----EEEE--CCEEEEecCCCCEEEEEECCCCCc
Confidence            122222     3333  456777777788999999877754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.12  E-value=0.0012  Score=55.32  Aligned_cols=185  Identities=11%  Similarity=0.037  Sum_probs=107.2

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee--ccCCcCeE
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL--AVNSGPFH   83 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~i~   83 (224)
                      |-.|+.++-|..||..+++.....    .....|.++...+++ .+.+ |+.++-+..+|.++++.....  ......|.
T Consensus       376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-NLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVR  453 (781)
T ss_dssp             EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-CEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-CEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence            445565666888888765433221    134678999888877 4444 666677888998776532221  12345789


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-----CCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-----CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      ++...+ ++.+.+. +. +.+..||..+++........     ...|.++...++|...+....+| +..||..+++. .
T Consensus       454 ~i~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~  528 (781)
T 3v9f_A          454 VFYEDK-NKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-R  528 (781)
T ss_dssp             EEEECT-TSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-E
T ss_pred             EEEECC-CCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-E
Confidence            998887 5555544 44 56889998765432222111     35788999888887655443344 88888766532 2


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+........-.+..+...+ ++.+.++ +.+|.+..||..+++.
T Consensus       529 ~~~~~~~l~~~~i~~i~~d~-~g~lWi~-T~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          529 KFNQYEGFCSNTINQIYRSS-KGQMWLA-TGEGLVCFPSARNFDY  571 (781)
T ss_dssp             EECTTTTCSCSCEEEEEECT-TSCEEEE-ETTEEEEESCTTTCCC
T ss_pred             EccCCCCCCCCeeEEEEECC-CCCEEEE-ECCCceEEECCCCCcE
Confidence            33211111111233344444 4554444 3466558888776643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.08  E-value=0.0029  Score=51.63  Aligned_cols=183  Identities=7%  Similarity=-0.041  Sum_probs=110.1

Q ss_pred             CCCcEEEEeCCCCc--eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc-ceeeccCCcCeEEEEEcCCC
Q psy11351         15 NDDHVISHDMASGD--PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-ATELAVNSGPFHAVMFNPVE   91 (224)
Q Consensus        15 ~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~   91 (224)
                      ....|+..++....  .......-.....++|++.+..++.+=...+.|..+++..... ...+.........+++++.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            46789999998653  2223344556889999987645666666678999998875432 22233323467899999855


Q ss_pred             CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceec-c-cCCccc
Q psy11351         92 ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQF-D-HEGYYN  167 (224)
Q Consensus        92 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~-~-~~~~~~  167 (224)
                      ++++++-...+.|.+.++............-.....++++|.+.+|+....  .+.|...++.. .....+ . .-...+
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~  174 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPN  174 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCc
Confidence            667777777889999998754332222234456788999998776666553  34555556553 333333 1 111222


Q ss_pred             ceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                           .+++.+.++.++++-+..+.|..+++.....
T Consensus       175 -----Glald~~~~~LY~aD~~~~~I~~~~~dG~~~  205 (619)
T 3s94_A          175 -----GLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  205 (619)
T ss_dssp             -----EEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred             -----EEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence                 3556654566666666777888888875433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.00023  Score=55.39  Aligned_cols=155  Identities=10%  Similarity=0.036  Sum_probs=90.0

Q ss_pred             CeeEEEEcC-CCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecC-CC----cEEEEecCC
Q psy11351         38 PVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANS-KD----GIALYDTRK  111 (224)
Q Consensus        38 ~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg----~v~i~d~~~  111 (224)
                      ....++++| ++ ..|..+...+.|+.+|...++... +.........++|++ +++.|+.+.. ++    .+..++...
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCCC
Confidence            457889998 34 345554444889999988765333 323345678999999 7774444433 22    233444332


Q ss_pred             Cce-eeEeecCCCceeEEEEcC-CCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCe-EEEEcC
Q psy11351        112 PKE-VLMQYGSCESCMSIRFNK-AGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE-YVVSGS  188 (224)
Q Consensus       112 ~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~  188 (224)
                      ... ...+. .......++++| ++..+++-..++.|..++..++............   .-..++|+| +++ ++++-.
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~---~P~gia~~p-dG~~lyv~d~  289 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG---WEFHIQFHP-SGNYAYIVVV  289 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS---CCEEEEECT-TSSEEEEEET
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC---cceeEEEcC-CCCEEEEEEC
Confidence            111 11121 233457788999 5665555556678999998765432222111110   112377777 576 666667


Q ss_pred             CCCeEEEEeCCC
Q psy11351        189 DDFVLYMWRVPR  200 (224)
Q Consensus       189 ~d~~v~iw~~~~  200 (224)
                      ..+.|..++...
T Consensus       290 ~~~~I~~~~~d~  301 (430)
T 3tc9_A          290 NQHYILRSDYDW  301 (430)
T ss_dssp             TTTEEEEEEEET
T ss_pred             CCCEEEEEeCCc
Confidence            788999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.0024  Score=53.52  Aligned_cols=185  Identities=10%  Similarity=0.028  Sum_probs=105.5

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEe---ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC----
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYL---HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN----   78 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----   78 (224)
                      .+. |-.|+.++-+..+|..+++......   ....|.++...+++ .+.+ |+. +-+..+|..+++........    
T Consensus       417 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~  492 (781)
T 3v9f_A          417 EGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNK-KIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQL  492 (781)
T ss_dssp             TSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTS-EEEE-EET-TEEEEEESSSSSCCEEECTTTSSC
T ss_pred             CCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCC-CEEE-EEC-CceEEEeCCCCeEEecccCccccc
Confidence            444 3446666678888887765543321   34678999988887 4444 444 56888998776543222111    


Q ss_pred             -CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         79 -SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        79 -~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                       ...|.++...+ ++.+.+.. .++.+..||..+.+ ...+..    ....|.++...++|...+.. .+|-+..||..+
T Consensus       493 ~~~~i~~i~~d~-~g~lWigt-~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~  568 (781)
T 3v9f_A          493 LENFVRSIAQDS-EGRFWIGT-FGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN  568 (781)
T ss_dssp             SCSCEEEEEECT-TCCEEEEE-SSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred             ccceeEEEEEcC-CCCEEEEE-cCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence             35789999888 66655544 44457788887653 333321    23568889888888765544 366438888776


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      ++. ..+........-.+..+...+ ++.+.++ +.+| |..|+..+++
T Consensus       569 ~~~-~~~~~~~gl~~~~i~~i~~d~-~g~lW~~-t~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          569 FDY-QVFQRKEGLPNTHIRAISEDK-NGNIWAS-TNTG-ISCYITSKKC  613 (781)
T ss_dssp             CCC-EEECGGGTCSCCCCCEEEECS-SSCEEEE-CSSC-EEEEETTTTE
T ss_pred             CcE-EEccccCCCCCceEEEEEECC-CCCEEEE-cCCc-eEEEECCCCc
Confidence            542 333211111111122233433 4555444 3444 6666766543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.00  E-value=0.002  Score=50.22  Aligned_cols=161  Identities=12%  Similarity=0.101  Sum_probs=92.8

Q ss_pred             cCCeeEEEEcC-CCCcEEEEecCCCEEEEEecCCcccceee-c-cCCcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCC
Q psy11351         36 ERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATEL-A-VNSGPFHAVMFNPVEAR-LVATANSKDGIALYDTRK  111 (224)
Q Consensus        36 ~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~  111 (224)
                      ......++++| ++ .++++-..++.|+.+|..++.....+ . .....-..++|+| +++ ++++-...+.|..++...
T Consensus       227 ~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          227 ARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             CSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCT
T ss_pred             cCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCC
Confidence            34567789999 55 67777777889999998866542222 1 1122235799999 666 566666678899988652


Q ss_pred             --Cce--eeEeecC---------------CCceeEEEE---------cCCCCeEeeeecCCCcEEEECCCCCcceecccC
Q psy11351        112 --PKE--VLMQYGS---------------CESCMSIRF---------NKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE  163 (224)
Q Consensus       112 --~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~  163 (224)
                        +..  +..+.+.               -.....+++         .++|.+.++-...+.|+.++. ++.........
T Consensus       305 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g  383 (433)
T 4hw6_A          305 ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRG  383 (433)
T ss_dssp             TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCC
T ss_pred             CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCC
Confidence              211  1122111               123567888         666766666556677888875 44332222211


Q ss_pred             -----Ccccc-------e-eeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        164 -----GYYNS-------C-TMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       164 -----~~~~~-------~-~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                           +....       + .-..+++.|.++.++++=..+++|+.++++
T Consensus       384 ~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          384 NSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                 10000       0 122356664356666666666777776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.0021  Score=48.20  Aligned_cols=142  Identities=11%  Similarity=0.174  Sum_probs=93.8

Q ss_pred             CCcEEEEeC--CCCceeeEEe-------cc-CCeeEEEE--cCCC-CcEEEEecCCCEEEEEecC-------Ccccceee
Q psy11351         16 DDHVISHDM--ASGDPIDFYL-------HE-RPVYGLSV--DPSQ-DAIFASACDDGRVLLFDTR-------SREEATEL   75 (224)
Q Consensus        16 dg~i~iwd~--~~~~~~~~~~-------~~-~~v~~~~~--~~~~-~~~l~s~~~d~~i~iwd~~-------~~~~~~~~   75 (224)
                      +++|++|++  .+++ +...+       .. ..+..+++  +|.. ..+++....+|.+..|++.       +.+.++++
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999976  3443 33331       12 56777888  7754 2368888889999999983       33456666


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC-----CCceeeEee-c-CCCceeEEEE--cCCCC-eEeeee-cCC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR-----KPKEVLMQY-G-SCESCMSIRF--NKAGT-QLLGLR-RRL  144 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~-----~~~~~~~~~-~-~~~~v~~~~~--~~~~~-~l~~~~-~d~  144 (224)
                      .. .+.+..|...+ ....|+.+-++..|..||.+     +.+.+.... + ....+..|++  .++++ +|++++ .++
T Consensus       177 ~l-gsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          177 KM-NSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EC-SSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             cC-CCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            54 45788999998 77788888888777777755     222222221 1 2246788887  45555 677766 567


Q ss_pred             CcEEEECC-CCCcceec
Q psy11351        145 PPVLYNTR-SSSPVAQF  160 (224)
Q Consensus       145 ~v~v~d~~-~~~~~~~~  160 (224)
                      +..+||.+ +.+.+..|
T Consensus       255 s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          255 SYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEEESSTTCCEEEEE
T ss_pred             EEEEEECCCCCcEEEEE
Confidence            89999996 56666666

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.96  E-value=0.0025  Score=46.79  Aligned_cols=184  Identities=10%  Similarity=0.000  Sum_probs=96.2

Q ss_pred             cceEEEEEeCC-----CcEEEEeCCCCc---eeeEE--eccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcc
Q psy11351          6 PIKVLRVIGND-----DHVISHDMASGD---PIDFY--LHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSRE   70 (224)
Q Consensus         6 ~~~~l~~~~~d-----g~i~iwd~~~~~---~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~   70 (224)
                      .+++++.|+.+     ..+.+||+.+.+   ....-  .....-.++... ++ .+++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GD-MIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CC-EEEEEcccCCCcccceEEEEcCCCCe
Confidence            35667777755     368899998876   43322  111111122222 34 677777643     468889987765


Q ss_pred             cc--eeeccCCcCeEEEEEcCCCCCeEEEecCC-----CcEEEEecCCCceeeEeec---CCCceeEEEEcCCCCeEeee
Q psy11351         71 EA--TELAVNSGPFHAVMFNPVEARLVATANSK-----DGIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        71 ~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~  140 (224)
                      -.  ..+......-..+.+   ++.+++.|+.+     ..+.+||+.+.+-. ....   .......+.+  +++.++.|
T Consensus       140 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~i~v~G  213 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWT-NVTPMATKRSGAGVALL--NDHIYVVG  213 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             EEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEE-eCCCCCcccccceEEEE--CCEEEEEe
Confidence            22  122111112222222   45677777654     35889998876322 2211   1111122222  45666666


Q ss_pred             ecC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        141 RRR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       141 ~~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                      +.+     ..+.+||+.+.+-...-........  .. ++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY--VG-ATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CE-EEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCCcccc--ee-EEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            653     4588999987643322111111111  11 1122  67788888765     468899988764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.94  E-value=0.0018  Score=47.57  Aligned_cols=186  Identities=13%  Similarity=0.056  Sum_probs=94.7

Q ss_pred             cceEEEEEeCCC-----cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcccc-
Q psy11351          6 PIKVLRVIGNDD-----HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSREEA-   72 (224)
Q Consensus         6 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~-   72 (224)
                      .+.+++.|+.++     .+.+||..+.+....-  .....-.+++.. ++ .+++.|+.+     ..+.+||+.+.+-. 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CC-EEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            345677776543     5888898877644332  111111122222 34 677777655     35778888766522 


Q ss_pred             -eeeccCCcCeEEEEEcCCCCCeEEEecCC-------CcEEEEecCCCceeeE--eecCCCceeEEEEcCCCCeEeeeec
Q psy11351         73 -TELAVNSGPFHAVMFNPVEARLVATANSK-------DGIALYDTRKPKEVLM--QYGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        73 -~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------g~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                       ..+.........+.+   ++.+++.|+.+       ..+.+||+.+.+-...  ..........+.+  +++.++.|+.
T Consensus       139 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  213 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGH  213 (302)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             cCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCC
Confidence             112111112222222   45677776542       3488999887632211  1111111122222  5666677665


Q ss_pred             C-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC-----eEEEEeCCCCCe
Q psy11351        143 R-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF-----VLYMWRVPRDDI  203 (224)
Q Consensus       143 d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~v~iw~~~~~~~  203 (224)
                      +     ..+.+||+.+.+-...-........  .. ++..  ++.+++.|+.++     .+.+||+.+.+-
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRN--AG-VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CE-EEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCcccc--Ce-EEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            4     3588999887543322111111111  11 1121  678888887653     589999987643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.91  E-value=0.0019  Score=47.54  Aligned_cols=186  Identities=10%  Similarity=-0.022  Sum_probs=96.3

Q ss_pred             cceEEEEEeCC----CcEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCC------CEEEEEecCCcccce
Q psy11351          6 PIKVLRVIGND----DHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDD------GRVLLFDTRSREEAT   73 (224)
Q Consensus         6 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~   73 (224)
                      .+.+++.|+.+    ..+.+||..+++....-.  ....-.++... ++ .+++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            34567777754    568889998876544331  11111122222 34 677777765      468889988765221


Q ss_pred             --eeccCCcCeEEEEEcCCCCCeEEEecC---------CCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeee
Q psy11351         74 --ELAVNSGPFHAVMFNPVEARLVATANS---------KDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        74 --~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  140 (224)
                        .+......-..+.+   ++.+++.|+.         -..+.+||+.+.+- ..+..  ....-.++... +++.++.|
T Consensus       133 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~i~v~G  207 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-TELCPMIEARKNHGLVFV-KDKIFAVG  207 (306)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred             CCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeE-EECCCccchhhcceEEEE-CCEEEEEe
Confidence              12111111222222   4567777653         34588999987632 22221  11111122222 55666666


Q ss_pred             ecC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCCe
Q psy11351        141 RRR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDDI  203 (224)
Q Consensus       141 ~~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~~  203 (224)
                      +.+     ..+.+||+.+.+-...-........  ...+.+   ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       208 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT--VKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             CEETTEEBCCEEEEETTTTEEEECCCCSCCBSC--CEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCCCCCCCceEEEeeCCCCcEEECCCCCCCccc--eeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            543     4588999887543222111111111  111222   67788888744     5788999988643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.90  E-value=0.0025  Score=46.79  Aligned_cols=184  Identities=14%  Similarity=0.044  Sum_probs=95.1

Q ss_pred             ceEEEEEe-CC-----CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcc---
Q psy11351          7 IKVLRVIG-ND-----DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSRE---   70 (224)
Q Consensus         7 ~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~---   70 (224)
                      +.+++.|+ .+     ..+.+||+.+++....-  .....-.++.. .++ .+++.|+.+     ..+.+||..+++   
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHD-RIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETT-EEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-ECC-EEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            45677777 33     36889999877644322  11111112222 234 677777755     468899988765   


Q ss_pred             cc--eeeccCCcCeEEEEEcCCCCCeEEEecCC-----CcEEEEecCCCceeeE--eecCCCceeEEEEcCCCCeEeeee
Q psy11351         71 EA--TELAVNSGPFHAVMFNPVEARLVATANSK-----DGIALYDTRKPKEVLM--QYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        71 ~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      -.  ..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+-...  ..........+.+  +++.++.|+
T Consensus        93 W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence            21  112111122222222   45677777644     3588899887642211  1111111122222  566666666


Q ss_pred             cC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        142 RR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       142 ~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                      .+     ..+.+||+.+.+-...-..........   +...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~---~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG---VALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE---EEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccce---EEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            44     458889987764332211111111111   1111  67888888764     468899988764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.88  E-value=0.0038  Score=47.98  Aligned_cols=132  Identities=11%  Similarity=0.189  Sum_probs=88.4

Q ss_pred             CCcEEEEeCCCCceeeEEecc-----CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----------cc--eeecc-
Q psy11351         16 DDHVISHDMASGDPIDFYLHE-----RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----------EA--TELAV-   77 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------~~--~~~~~-   77 (224)
                      ++.||.-++......+.+...     ..+..+..+|+| ++||..+ +..|.|-.+..+.          .+  +.+.- 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            567888888755444444222     268889999999 7888876 4688888876321          01  12211 


Q ss_pred             -----CCcCeEEEEEcCCC--CCeEEEecCCCcEEEEecCCCc-eeeEee---------cCCCceeEEEEcCCCCeEeee
Q psy11351         78 -----NSGPFHAVMFNPVE--ARLVATANSKDGIALYDTRKPK-EVLMQY---------GSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        78 -----~~~~i~~~~~~~~~--~~~l~~~~~dg~v~i~d~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~l~~~  140 (224)
                           ...+|..+.|||..  +..|++-..|+.|++||+.... .+..+.         .....|.+++|.+++-.|...
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl  197 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL  197 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence                 24679999999953  3478888899999999998522 222111         133678899999988877775


Q ss_pred             e--cCCCcEEE
Q psy11351        141 R--RRLPPVLY  149 (224)
Q Consensus       141 ~--~d~~v~v~  149 (224)
                      +  ..|.|+-.
T Consensus       198 ~~t~~GDIYAl  208 (452)
T 3pbp_A          198 NTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ecCCCCCEEEE
Confidence            5  66766543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.87  E-value=0.0041  Score=46.43  Aligned_cols=152  Identities=13%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKP  112 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  112 (224)
                      .....+..+.+.|++ .+++.+...+..+-+|-. ++.-..+ ......+..+.+.+ ++.+++.+ .+|.+.+.+...+
T Consensus       160 ~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~G~~~~s~~D~G  235 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTP-DGRLWMIV-NGGKIAFSDPDNS  235 (327)
T ss_dssp             SCCCCEEEEEECTTS-CEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECT-TSCEEEEE-TTTEEEEEETTEE
T ss_pred             CCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECC-CCCEEEEe-CCceEEEecCCCC
Confidence            445678999999987 677776654444444421 2211111 23345788999988 66666554 5677776642222


Q ss_pred             ceeeEee----cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc----cCCcccceeeeEEEEeCCCCeEE
Q psy11351        113 KEVLMQY----GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD----HEGYYNSCTMKSCCFAGTQDEYV  184 (224)
Q Consensus       113 ~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l  184 (224)
                      +.-....    .....+..+.+.+++..++++. ++.+ .+....++.-..+.    ....+..     +.|.+ ++. +
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~-----v~~~~-~~~-~  306 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYK-----ILFFS-PDQ-G  306 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCE-----EEEEE-TTE-E
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEE-----EEEEC-CCc-e
Confidence            2211111    1223578899998777666554 5655 44555554443332    1233343     44433 455 4


Q ss_pred             EEcCCCCeEEEEeC
Q psy11351        185 VSGSDDFVLYMWRV  198 (224)
Q Consensus       185 ~s~~~d~~v~iw~~  198 (224)
                      ++++.+|.|.-++-
T Consensus       307 ~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          307 FILGQKGILLRYVT  320 (327)
T ss_dssp             EEECSTTEEEEECC
T ss_pred             EEEcCCceEEEEcC
Confidence            55567887776653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.78  E-value=0.0063  Score=45.96  Aligned_cols=135  Identities=10%  Similarity=0.084  Sum_probs=81.4

Q ss_pred             CCCcEEEEeCCCC--ceee--EEe-----ccCCeeEEEEcC--CCCcEEEEe-cC--CCEEEEEecCCccc----ceeec
Q psy11351         15 NDDHVISHDMASG--DPID--FYL-----HERPVYGLSVDP--SQDAIFASA-CD--DGRVLLFDTRSREE----ATELA   76 (224)
Q Consensus        15 ~dg~i~iwd~~~~--~~~~--~~~-----~~~~v~~~~~~~--~~~~~l~s~-~~--d~~i~iwd~~~~~~----~~~~~   76 (224)
                      .+|.|.++|.++.  +...  ..+     .......+.+.+  ++..+|+.+ ..  +.+|.+|++..+..    +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            7999999999743  3222  112     224677888766  342234433 32  56888888765432    22332


Q ss_pred             cC-CcCeEEEEEcCCCCCeEEEec-----------------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEe
Q psy11351         77 VN-SGPFHAVMFNPVEARLVATAN-----------------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLL  138 (224)
Q Consensus        77 ~~-~~~i~~~~~~~~~~~~l~~~~-----------------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  138 (224)
                      +. -...+++.+.+ ++.++++..                 ..|.|.-+|..   ........-...+.++|+||++.|+
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~~~~~~~~l~~pNGia~spDg~~lY  236 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---DVRVVAEGFDFANGINISPDGKYVY  236 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---CCEEEEEEESSEEEEEECTTSSEEE
T ss_pred             cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---eEEEeecCCcccCcceECCCCCEEE
Confidence            22 23578999999 777777653                 12455555543   2222222334568899999999887


Q ss_pred             eee-cCCCcEEEECCC
Q psy11351        139 GLR-RRLPPVLYNTRS  153 (224)
Q Consensus       139 ~~~-~d~~v~v~d~~~  153 (224)
                      .+. ..+.|+.|++..
T Consensus       237 vadt~~~~I~~~~~~~  252 (355)
T 3sre_A          237 IAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEGGGTEEEEEEECT
T ss_pred             EEeCCCCeEEEEEECC
Confidence            765 467799999864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.69  E-value=0.006  Score=44.75  Aligned_cols=185  Identities=11%  Similarity=0.055  Sum_probs=94.2

Q ss_pred             cceEEEEEeCC----CcEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcccc--
Q psy11351          6 PIKVLRVIGND----DHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSREEA--   72 (224)
Q Consensus         6 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~--   72 (224)
                      ++.+++.|+.+    ..+..||+.+.+....-.  ....-.++... ++ .+++.|+.+     ..+.+||..+.+-.  
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CC-EEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            45677777754    358899998776443321  11111122222 34 677777754     35788898776522  


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEecCCC-----cEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecC--
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATANSKD-----GIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRR--  143 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d--  143 (224)
                      ..+.........+.+   ++.+++.|+.++     .+.+||+.+.+- .....  ....-.+++. -+++.++.|+.+  
T Consensus        93 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  167 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVA  167 (302)
T ss_dssp             CCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred             CCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence            122211122222222   456777776553     477889876642 22211  1111112222 245666666542  


Q ss_pred             -----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        144 -----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       144 -----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                           ..+.+||+.+.+-...-.........   .++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~---~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGA---GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTEECCCEEEEETTTTEEEEECCCSSCCBSC---EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCccccEEEEEeCCCCcEEECCCCccccccc---cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence                 34788998765432221111111111   11121  67888888764     368899988764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0034  Score=47.04  Aligned_cols=193  Identities=9%  Similarity=0.025  Sum_probs=105.4

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEecc--CCeeEEEEc--CCCCcEEEEe-cCCCEEEEEecCCcccceeecc----
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHE--RPVYGLSVD--PSQDAIFASA-CDDGRVLLFDTRSREEATELAV----   77 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~----   77 (224)
                      +.+++.++.||.|.-+|.++|+.+..+...  .++....-.  +.+...++.. ..||.+..++..+|.....+..    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            458899999999999999999998887433  233221100  1121344443 6899999999988854433321    


Q ss_pred             CCcCeEE---EEE-----cCCCCCeEEEecCCCcEEEEecCCCceeeEeecCC--Cc-----eeEEEEc-----CCCCeE
Q psy11351         78 NSGPFHA---VMF-----NPVEARLVATANSKDGIALYDTRKPKEVLMQYGSC--ES-----CMSIRFN-----KAGTQL  137 (224)
Q Consensus        78 ~~~~i~~---~~~-----~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~~~l  137 (224)
                      ...++..   ..+     .. .+..+++|+.+|.+.-.|+++++.+..+....  ..     ..|....     ..+..+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             TTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence            1122221   000     00 34578899999999999999998877765321  10     1111111     124567


Q ss_pred             eeeecCCCcEEEECCCCCcceecccC---Ccccceeee-EEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        138 LGLRRRLPPVLYNTRSSSPVAQFDHE---GYYNSCTMK-SCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       138 ~~~~~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +.+..+..+.+.+ ++|+ +..+...   .......+. .-..+. ++.+ +.++.||.|.-+|..+|+..
T Consensus       169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~  235 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIAR  235 (339)
T ss_dssp             EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEE
T ss_pred             EEecceEEEEEEC-CCCC-eEEEeccccccccccccccccccccc-CCcE-EEECCCCEEEEEECCCCcEE
Confidence            7777777777766 4453 3222100   000000000 000000 3444 44677888888888877653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.62  E-value=0.004  Score=46.07  Aligned_cols=184  Identities=10%  Similarity=0.050  Sum_probs=91.8

Q ss_pred             cceEEEEEeC-----C------CcEEEEeCCCCceeeEEeccCC--eeEEEEcCCCCcEEEEecCC--------CEEEEE
Q psy11351          6 PIKVLRVIGN-----D------DHVISHDMASGDPIDFYLHERP--VYGLSVDPSQDAIFASACDD--------GRVLLF   64 (224)
Q Consensus         6 ~~~~l~~~~~-----d------g~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d--------~~i~iw   64 (224)
                      .+++++.|+.     .      ..+..||..+++....-.-..+  -.+++.. ++ .+++.|+.+        ..+.+|
T Consensus        45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEE
T ss_pred             CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEE
Confidence            4567777773     1      1277888887764332211111  1112222 34 677777742        458889


Q ss_pred             ecCCccc--ceeeccCCcCeEEEEEcCCCCCeEEEecC-C-----CcEEEEecCCCceeeEeec---CCCceeEEEEcCC
Q psy11351         65 DTRSREE--ATELAVNSGPFHAVMFNPVEARLVATANS-K-----DGIALYDTRKPKEVLMQYG---SCESCMSIRFNKA  133 (224)
Q Consensus        65 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-----g~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~  133 (224)
                      |..+.+-  +..+......-..+.+   ++.+++.|+. +     ..+.+||+.+.+- .....   .......+.+  +
T Consensus       123 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~  196 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--D  196 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--T
T ss_pred             CCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--C
Confidence            9887642  1222211122222222   4567777765 2     3588999887632 11111   1111122222  5


Q ss_pred             CCeEeeeecCC-----CcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC--------------CeEE
Q psy11351        134 GTQLLGLRRRL-----PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD--------------FVLY  194 (224)
Q Consensus       134 ~~~l~~~~~d~-----~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------------~~v~  194 (224)
                      ++.++.|+.++     .+.+||+.+.+-...-........  .. ++..  ++.+++.|+.+              ..+.
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~-~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~  271 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS--LS-LVSL--VGTLYAIGGFATLETESGELVPTELNDIW  271 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS--CE-EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc--ee-EEEE--CCEEEEECCccccCcCCccccccccCcEE
Confidence            66777776544     478889877643222111111111  11 1111  57777777753              2477


Q ss_pred             EEeCCCCC
Q psy11351        195 MWRVPRDD  202 (224)
Q Consensus       195 iw~~~~~~  202 (224)
                      +||+.+.+
T Consensus       272 ~yd~~~~~  279 (315)
T 4asc_A          272 RYNEEEKK  279 (315)
T ss_dssp             EEETTTTE
T ss_pred             EecCCCCh
Confidence            88988764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.62  E-value=0.0073  Score=44.50  Aligned_cols=183  Identities=11%  Similarity=-0.008  Sum_probs=93.3

Q ss_pred             ceEEEEEeC----C-----CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC-----CEEEEEecCCcc
Q psy11351          7 IKVLRVIGN----D-----DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD-----GRVLLFDTRSRE   70 (224)
Q Consensus         7 ~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~   70 (224)
                      +++++.|+.    +     ..+.+||+.+.+....-  .....-.++... ++ ++++.|+.+     ..+.+||..+.+
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TT-EEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CC-EEEEEcCCCCCcccccEEEECCCCCe
Confidence            456666665    2     46888998877544322  111111122222 34 677777643     357888987765


Q ss_pred             cc--eeeccCCcCeEEEEEcCCCCCeEEEecCC-----CcEEEEecCCCceeeEeec---CCCceeEEEEcCCCCeEeee
Q psy11351         71 EA--TELAVNSGPFHAVMFNPVEARLVATANSK-----DGIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        71 ~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~  140 (224)
                      -.  ..+......-..+.+   ++.+++.|+.+     ..+.+||+.+.+- .....   .......+.+  +++.++.|
T Consensus       149 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~G  222 (308)
T 1zgk_A          149 WHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAG  222 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             EeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEe
Confidence            22  122211122223332   45677777654     4588999876532 11111   1111222233  56666666


Q ss_pred             ecC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        141 RRR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       141 ~~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                      +.+     ..+.+||+.+.+-...-........  .. ++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSA--LG-ITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS--CE-EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCcEEECCCCCCCccc--eE-EEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            654     4588999887543222111111111  11 1122  67888888754     468899988764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.60  E-value=0.01  Score=43.55  Aligned_cols=184  Identities=9%  Similarity=0.028  Sum_probs=94.8

Q ss_pred             ceEEEEEeCC--CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC----CEEEEEecCCcccc--eeec
Q psy11351          7 IKVLRVIGND--DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD----GRVLLFDTRSREEA--TELA   76 (224)
Q Consensus         7 ~~~l~~~~~d--g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~--~~~~   76 (224)
                      +.+++.|+.+  ..+.+||..+++....-  .....-.++... ++ .+++.|+.+    ..+.+||..+++-.  ..+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            4466677653  57899999887654332  111111122222 34 677777754    67888998876522  1222


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCC------CcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeec------
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSK------DGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRR------  142 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------  142 (224)
                      ........+.+   ++.+++.|+.+      ..+.+||+.+.+- .....  ....-.+++. -+++.++.|+.      
T Consensus        90 ~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           90 TPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             SCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTT
T ss_pred             ccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCc
Confidence            11122222232   45677777654      4588999887642 22211  1111112222 25566666653      


Q ss_pred             ---CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        143 ---RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       143 ---d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                         -..+.+||+.+.+-...-.........   .++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~---~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNH---GLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSC---EEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcc---eEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence               344788998876432221111111111   11222  67788887754     367889988764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.0028  Score=50.02  Aligned_cols=155  Identities=11%  Similarity=0.075  Sum_probs=88.9

Q ss_pred             eeEEEEcCC-CCcEEEEecCCCEEEEEecCCcccceeecc---CCcCeEEEEE-------cCCCCCeEEEecCCC-----
Q psy11351         39 VYGLSVDPS-QDAIFASACDDGRVLLFDTRSREEATELAV---NSGPFHAVMF-------NPVEARLVATANSKD-----  102 (224)
Q Consensus        39 v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~~l~~~~~dg-----  102 (224)
                      ...|+|+|. +.+++++-...+.|++.|..++........   .......++|       ++ ++..|+.+...+     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence            568899983 435555555557888899887764433322   1235789999       99 666555554433     


Q ss_pred             --cEEEEecCC-Ccee-----eEeecCCCceeEEEEcCCCCeEee-eecCCCcEEEECC-------CCCc----------
Q psy11351        103 --GIALYDTRK-PKEV-----LMQYGSCESCMSIRFNKAGTQLLG-LRRRLPPVLYNTR-------SSSP----------  156 (224)
Q Consensus       103 --~v~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~v~d~~-------~~~~----------  156 (224)
                        .|.+++... +...     ..+. .......++++|++..|+. -..++.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266666443 1111     1111 1223457788996555554 4466779999987       4543          


Q ss_pred             -ceec-ccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCC
Q psy11351        157 -VAQF-DHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       157 -~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~  199 (224)
                       ...+ .....  . ....++|+| +++ ++++-+..+.|+.++..
T Consensus       299 ~~~~l~~~~~~--~-~p~~ia~~p-~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTIADP--S-WEFQIFIHP-TGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEECSSS--S-CCEEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEecCCC--C-CceEEEEcC-CCCEEEEEeCCCCEEEEEecC
Confidence             1111 11110  0 012478888 576 46666678899886654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.60  E-value=0.02  Score=46.68  Aligned_cols=190  Identities=8%  Similarity=-0.060  Sum_probs=112.1

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      +.++.+-...+.|+.++++........ ..-.....+++.+.+.+++.+-+..+.|.+.++........+...-..-..+
T Consensus       361 ~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~i  440 (619)
T 3s94_A          361 GYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAI  440 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEE
T ss_pred             CeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeE
Confidence            344444445667777777654433333 2224677899987554777887788999999987543222222233467899


Q ss_pred             EEcCCCCCeEEEec-CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCCcEEEECCCCCcceec-cc
Q psy11351         86 MFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        86 ~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      +++|..+.++.+-. ....|...++.-..........-.....+++++++..|+.+.. .+.|..+++......... ..
T Consensus       441 avdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~  520 (619)
T 3s94_A          441 VLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK  520 (619)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC
T ss_pred             EEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC
Confidence            99994455555532 2356766666533222222233456789999998777777654 456888887644322221 11


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      -.+...+++     .  .+.++++-...+.|...+..++..
T Consensus       521 l~~P~glav-----~--~~~ly~tD~~~~~I~~~~k~~g~~  554 (619)
T 3s94_A          521 IPHIFGFTL-----L--GDYVYWTDWQRRSIERVHKRSAER  554 (619)
T ss_dssp             CCSSCCEEE-----E--TTEEEEECTTSSCEEEEESSSCCE
T ss_pred             CCCcEEEEE-----E--CCEEEEeecCCCeEEEEEcCCCce
Confidence            122233332     2  356667766777888888887744

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.56  E-value=0.0063  Score=44.86  Aligned_cols=185  Identities=8%  Similarity=0.007  Sum_probs=94.5

Q ss_pred             CcceEEEEEeCC----CcEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecC----C-----CEEEEEecCCc
Q psy11351          5 DPIKVLRVIGND----DHVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACD----D-----GRVLLFDTRSR   69 (224)
Q Consensus         5 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~----d-----~~i~iwd~~~~   69 (224)
                      -.+.+++.|+.+    ..+.+||..+++....-.  ....-.+++.. ++ .+++.|+.    +     ..+.+||..+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            345677777642    368899998776543321  11111122222 34 67777775    2     35788888776


Q ss_pred             cc--ceeeccCCcCeEEEEEcCCCCCeEEEecCC-----CcEEEEecCCCceeeEeec---CCCceeEEEEcCCCCeEee
Q psy11351         70 EE--ATELAVNSGPFHAVMFNPVEARLVATANSK-----DGIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        70 ~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~  139 (224)
                      +-  +..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+- .....   ....-..+.+  ++..++.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             eEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE--CCEEEEE
Confidence            52  1122211122223333   45677777643     3588899886532 11111   1111122222  5566666


Q ss_pred             eecC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        140 LRRR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       140 ~~~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                      |+.+     ..+.+||+.+.+-...-........  . .++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG--A-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS--C-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc--c-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            6543     4588899876543222111111111  1 11222  67788888764     568899988764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.53  E-value=0.018  Score=44.49  Aligned_cols=188  Identities=8%  Similarity=0.009  Sum_probs=114.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-ccceeeccCC----cCeE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-EEATELAVNS----GPFH   83 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~----~~i~   83 (224)
                      .+|.- ...++.|+|+++.+.++.......|.-=.|-..  +.|+-.+ +..|+-|++... .+.+.+..|.    ..|.
T Consensus        79 iiALr-ag~~lQiFnle~K~klks~~~~e~VvfWkWis~--~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QII  154 (494)
T 1bpo_A           79 VIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII  154 (494)
T ss_dssp             CEEEE-ETTEEEEEETTTTEEEEEEECSSCCCEEEEEET--TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred             EEEEe-cCCeEEEEchHHhhhhcceecCCCceEEEecCC--CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEE
Confidence            34433 377999999999998888876677777777755  3555555 459999999743 4555554443    3677


Q ss_pred             EEEEcCCCCCeEEEec-------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCC---CeEeeeec---CCCcEEEE
Q psy11351         84 AVMFNPVEARLVATAN-------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG---TQLLGLRR---RLPPVLYN  150 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~-------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---d~~v~v~d  150 (224)
                      .-..++ +.++++..+       -.|.+.+|..+.. ....+.+|...-..+.+.-+.   ..++.+..   .+.+++.+
T Consensus       155 nY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E  232 (494)
T 1bpo_A          155 NYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  232 (494)
T ss_dssp             EEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred             EEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence            777788 666665432       2467889998765 345555565444333332211   12332322   26788888


Q ss_pred             CCCC---Cc-c-----eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        151 TRSS---SP-V-----AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       151 ~~~~---~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +...   .+ .     ..+-.....+...+ .+..++ ....+..-+.-|.+++||+.++.+.
T Consensus       233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~-kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISE-KHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             CSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEET-TTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCccCCCCccceeeeeeCCcccccCcee-EEEecc-cCCEEEEEecCceEEEEecccceee
Confidence            8532   11 1     01111222333222 245555 4566667778999999999999885

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.51  E-value=0.011  Score=41.38  Aligned_cols=130  Identities=12%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             eEEEEEeCCCcEEEEeCCCCc------eeeEEec--cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          8 KVLRVIGNDDHVISHDMASGD------PIDFYLH--ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      .+|....+| +++.=...++.      .....+.  =..+.+++|+|++ .+.+.  .+|.+.-.+..+.+...-+ +..
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~-~s~   79 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWM-GRA   79 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHH-HHC
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCccccc-ccc
Confidence            467777777 77776666655      2234444  2478899999988 56655  6777766665443221111 111


Q ss_pred             cC--------eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceee-----Eeec--CCCceeEEEEcCCCCeEeeeecCC
Q psy11351         80 GP--------FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVL-----MQYG--SCESCMSIRFNKAGTQLLGLRRRL  144 (224)
Q Consensus        80 ~~--------i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-----~~~~--~~~~v~~~~~~~~~~~l~~~~~d~  144 (224)
                      ..        ..++.|.| ++.+.++  .||.|.-++-.+...-.     ...+  -=..+..|.|.|+|.+.++.  |+
T Consensus        80 t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             EEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             cEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence            22        37889999 8887777  45888777754322111     1111  11357899999999887776  66


Q ss_pred             CcE
Q psy11351        145 PPV  147 (224)
Q Consensus       145 ~v~  147 (224)
                      .++
T Consensus       155 ~ly  157 (236)
T 1tl2_A          155 QFY  157 (236)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.46  E-value=0.015  Score=43.00  Aligned_cols=185  Identities=12%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             cceEEEEEeC----CC-------cEEEEeCCCCceeeEEe--ccCCeeEEEEcCCCCcEEEEecCC-------CEEEEEe
Q psy11351          6 PIKVLRVIGN----DD-------HVISHDMASGDPIDFYL--HERPVYGLSVDPSQDAIFASACDD-------GRVLLFD   65 (224)
Q Consensus         6 ~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd   65 (224)
                      .+.+++.|+.    ++       .+..||..+.+....-.  ....-.+++.. ++ .+++.|+.+       ..+.+||
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEe
Confidence            4566777773    12       17788887765443221  11111122222 34 677777654       3578888


Q ss_pred             cCCcccce--eeccCCcCeEEEEEcCCCCCeEEEecC------CCcEEEEecCCCceeeEeec--CCCceeEEEEcCCCC
Q psy11351         66 TRSREEAT--ELAVNSGPFHAVMFNPVEARLVATANS------KDGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGT  135 (224)
Q Consensus        66 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~  135 (224)
                      ..+.+-..  .+......-..+.  . ++.+++.|+.      -..+.+||+.+.+- .....  ....-.+++.. +++
T Consensus       134 ~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~  208 (318)
T 2woz_A          134 PVAAKWSEVKNLPIKVYGHNVIS--H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVAIH-KGK  208 (318)
T ss_dssp             TTTTEEEEECCCSSCEESCEEEE--E-TTEEEEECCEESSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE-TTE
T ss_pred             CCCCCEeECCCCCCcccccEEEE--E-CCEEEEEcCCCCCCCccceEEEEcCCCCEE-EECCCCCCCcccceEEEE-CCE
Confidence            87765221  1211111112222  2 5667777764      23589999987642 22211  11111122222 556


Q ss_pred             eEeeeecC-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC--------------CeEEEE
Q psy11351        136 QLLGLRRR-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD--------------FVLYMW  196 (224)
Q Consensus       136 ~l~~~~~d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--------------~~v~iw  196 (224)
                      .++.|+.+     ..+.+||+.+.+-...-.........   .++..  ++.+++.|+.+              ..+.+|
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~---~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y  283 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI---SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKY  283 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC---EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred             EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce---EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence            66666543     24778898765432221111111111   11111  67788887754              357889


Q ss_pred             eCCCCC
Q psy11351        197 RVPRDD  202 (224)
Q Consensus       197 ~~~~~~  202 (224)
                      |+.+.+
T Consensus       284 d~~~~~  289 (318)
T 2woz_A          284 EDDKKE  289 (318)
T ss_dssp             ETTTTE
T ss_pred             eCCCCE
Confidence            988764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.41  E-value=0.019  Score=50.35  Aligned_cols=175  Identities=13%  Similarity=0.186  Sum_probs=102.1

Q ss_pred             CcEEEEeCCCCceeeEE--eccCCeeEEE---EcCCCCcEEEEec----------CCCEEEEEecCCcccceee-ccCCc
Q psy11351         17 DHVISHDMASGDPIDFY--LHERPVYGLS---VDPSQDAIFASAC----------DDGRVLLFDTRSREEATEL-AVNSG   80 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~--~~~~~v~~~~---~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~-~~~~~   80 (224)
                      +.|++.|..+.+.+..+  .....+.+++   |..+...+++.|.          ..|.|.+|++..++..... ...++
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            46899999888877655  3444555555   3333336788775          4589999999744321111 23467


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC-CCccee
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS-SSPVAQ  159 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~-~~~~~~  159 (224)
                      ++++++--.  +++++.  .+.++++|++...+.+.....+-..+..+.....++++++|..-..+.++..+. ...+..
T Consensus       887 ~v~al~~~~--g~Lla~--ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~  962 (1158)
T 3ei3_A          887 AVYSMVEFN--GKLLAS--INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE  962 (1158)
T ss_dssp             CEEEEEEET--TEEEEE--ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred             cCEEEeeeC--CEEEEE--cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence            888887544  444444  347899999986653331111112233334434578899998777777765432 222222


Q ss_pred             c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        160 F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      + +...+..   ...+.+-  +...++.+..+|.+.+...+.
T Consensus       963 ~a~D~~~~~---vta~~~l--d~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          963 IARDFNPNW---MSAVEIL--DDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEECCSCBC---EEEEEEE--ETTEEEEEETTSEEEEEEECT
T ss_pred             EEeeccccc---EEEEEEE--ccCcEEEEcCCCcEEEEecCC
Confidence            3 2222211   2223333  345777789999999987765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.28  E-value=0.033  Score=41.97  Aligned_cols=94  Identities=14%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE------eccCCeeEEEEcCC---CCcEEEEecCC-----CEEEEEec
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY------LHERPVYGLSVDPS---QDAIFASACDD-----GRVLLFDT   66 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~l~s~~~d-----~~i~iwd~   66 (224)
                      |++..+|+++++ ..+|.|++++  +++.....      ........++|+|+   +..++++-...     ..|..++.
T Consensus        36 ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~  112 (352)
T 2ism_A           36 LAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH  112 (352)
T ss_dssp             EEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred             EEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence            455667775554 5679999998  44322111      12457899999998   42454444332     67877877


Q ss_pred             CCcc-----cc-eeec---cCCcCeEEEEEcCCCCCeEEEe
Q psy11351         67 RSRE-----EA-TELA---VNSGPFHAVMFNPVEARLVATA   98 (224)
Q Consensus        67 ~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~~l~~~   98 (224)
                      ..+.     .+ ..+.   ........++|.| ++.++++.
T Consensus       113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~  152 (352)
T 2ism_A          113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT  152 (352)
T ss_dssp             CSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred             CCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence            6431     11 1122   1112236899999 77766664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.26  E-value=0.041  Score=42.44  Aligned_cols=141  Identities=9%  Similarity=0.101  Sum_probs=87.3

Q ss_pred             cEEEEecCCCEEEEEecCCcccceeeccC----CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCce-----------
Q psy11351         50 AIFASACDDGRVLLFDTRSREEATELAVN----SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKE-----------  114 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-----------  114 (224)
                      ..++.+- ++.||.-++......+.++..    -..|..+..+| ++.+||..+ +..|.|-.+..+..           
T Consensus        33 t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           33 TRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence            3444443 368887787754444444332    22578899999 889998884 45888888873210           


Q ss_pred             -eeEee-c-----CCCceeEEEEcCC---CCeEeeeecCCCcEEEECCCCC--cceecc-------cCCcccceeeeEEE
Q psy11351        115 -VLMQY-G-----SCESCMSIRFNKA---GTQLLGLRRRLPPVLYNTRSSS--PVAQFD-------HEGYYNSCTMKSCC  175 (224)
Q Consensus       115 -~~~~~-~-----~~~~v~~~~~~~~---~~~l~~~~~d~~v~v~d~~~~~--~~~~~~-------~~~~~~~~~~~~~~  175 (224)
                       ...+. +     ...+|..+.|+|-   +..|++-..|+.|++||+....  +. .+.       ....+  ..+.++|
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~--~ev~S~~  186 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV--NDITDLE  186 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC--CCEEEEE
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc--ceEEEEE
Confidence             11111 1     3578999999996   4589999999999999997632  22 221       11222  3345678


Q ss_pred             EeCCCCeEEEE--cCCCCeEEEEe
Q psy11351        176 FAGTQDEYVVS--GSDDFVLYMWR  197 (224)
Q Consensus       176 ~~~~~~~~l~s--~~~d~~v~iw~  197 (224)
                      |.+ ++-.|..  .+.+|.|+-..
T Consensus       187 Fg~-~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          187 FSK-DGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ECT-TSSCEEEEECTTSCEEEEES
T ss_pred             EcC-CCcEEEEEecCCCCCEEEEC
Confidence            876 4544444  45677776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.23  E-value=0.038  Score=41.50  Aligned_cols=137  Identities=9%  Similarity=-0.044  Sum_probs=62.6

Q ss_pred             CEEEEEecCCcccc--eeeccCCcCeEEEEEcCCCCCeEEEecC------CCcEEEEec--CCCceeeEeec---CCCce
Q psy11351         59 GRVLLFDTRSREEA--TELAVNSGPFHAVMFNPVEARLVATANS------KDGIALYDT--RKPKEVLMQYG---SCESC  125 (224)
Q Consensus        59 ~~i~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~i~d~--~~~~~~~~~~~---~~~~v  125 (224)
                      ..+.+||..+.+-.  ..+......-.+++..  ++.+++.|+.      ...+..||+  .+.+ -.....   .....
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCB
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccc
Confidence            57889998876522  2221111110233332  4567777653      235777876  3332 111111   11111


Q ss_pred             eEEEEcCCCCeEeeeecC----------------------CCcEEEECCCCCcceecccC-CcccceeeeEEEEeCCCCe
Q psy11351        126 MSIRFNKAGTQLLGLRRR----------------------LPPVLYNTRSSSPVAQFDHE-GYYNSCTMKSCCFAGTQDE  182 (224)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d----------------------~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  182 (224)
                      ...+...+++.++.|+.+                      ..+.+||+.+.+-...-... .......   +.+   ++.
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~---~~~---~~~  318 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS---LPW---NNS  318 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE---EEE---TTE
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee---EEe---CCE
Confidence            111222355666666532                      25789998865433221111 1111111   111   678


Q ss_pred             EEEEcCCCC------eEEEEeCCCCCeE
Q psy11351        183 YVVSGSDDF------VLYMWRVPRDDIY  204 (224)
Q Consensus       183 ~l~s~~~d~------~v~iw~~~~~~~~  204 (224)
                      +++.|+.++      .|.++++++++..
T Consensus       319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          319 LLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            888887542      4666788888765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.19  E-value=0.038  Score=40.73  Aligned_cols=181  Identities=9%  Similarity=-0.031  Sum_probs=90.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-ec-cCCeeEEEEcCCCCcEEEEecC-----C------CEEEEEecCCcccc--e
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LH-ERPVYGLSVDPSQDAIFASACD-----D------GRVLLFDTRSREEA--T   73 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l~s~~~-----d------~~i~iwd~~~~~~~--~   73 (224)
                      +++.|+  ..+.+||..+++....- .. ...........++ .+++.|+.     .      ..+..||..+++-.  .
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            455565  57999999988754321 11 1122222223344 67777763     1      23778888776521  1


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCC--------CcEEEEecCCCceeeEeec--CCCceeEEEEcCCCCeEeeeec-
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSK--------DGIALYDTRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRR-  142 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-  142 (224)
                      .+.........+.+   ++.+++.|+.+        ..+.+||+.+.+- .....  ....-.+++. -+++.++.|+. 
T Consensus        84 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  158 (315)
T 4asc_A           84 PLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVYGHTVLS-HMDLVYVIGGKG  158 (315)
T ss_dssp             CBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred             CCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcE-eECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence            12111111122222   45677777632        3488999887632 12111  1111112222 34566666665 


Q ss_pred             C-----CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC-----eEEEEeCCCCC
Q psy11351        143 R-----LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF-----VLYMWRVPRDD  202 (224)
Q Consensus       143 d-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~v~iw~~~~~~  202 (224)
                      +     ..+.+||+.+.+-...-........  .. ++..  ++.+++.|+.++     .+.+||+.+.+
T Consensus       159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~-~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSL--FG-ATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTSCBCCCEEEEETTTTEEEECCCCSSCCBS--CE-EEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCeEEECCCCCCchhc--eE-EEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            2     3588899876533222111111111  11 1111  677877777543     58889988763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.15  E-value=0.045  Score=40.76  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec----cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEec
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA----VNSGPFHAVMFNPVEARLVATANSKDGIALYDT  109 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~  109 (224)
                      .....+..+.+.+++ .+++. +.+|.+++.+...++....+.    .....+.++.+.+ ++.+++.+. +|.+ .+..
T Consensus       202 ~~~~~~~~~~~~~~g-~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~  276 (327)
T 2xbg_A          202 TTSRRLHNMGFTPDG-RLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQ  276 (327)
T ss_dssp             CSSSCEEEEEECTTS-CEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEES
T ss_pred             CCCCccceeEECCCC-CEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeC
Confidence            345678899999987 55544 457888776433233222222    1223588999988 677777664 5655 3333


Q ss_pred             CCCceeeEee---cCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351        110 RKPKEVLMQY---GSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus       110 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      ..++.-....   .....+.++.|.+++. +++++.+|.|.-++
T Consensus       277 DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          277 DGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             STTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            3343333222   1235678888875555 55556677665554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.10  E-value=0.046  Score=41.19  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceee---ccCCcCeEEEEEcCC---CCCeEEEecCC-----C
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATEL---AVNSGPFHAVMFNPV---EARLVATANSK-----D  102 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~---~~~~~~i~~~~~~~~---~~~~l~~~~~d-----g  102 (224)
                      -.....++|.|++ .++++ ..++.|.+++  .++.  +..+   .........++++|+   ++.++++-...     .
T Consensus        30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            3457899999998 55555 4569999998  3331  1111   122346789999993   24444444332     5


Q ss_pred             cEEEEecCCCc-----eeeE-ee---cCCCceeEEEEcCCCCeEeee
Q psy11351        103 GIALYDTRKPK-----EVLM-QY---GSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus       103 ~v~i~d~~~~~-----~~~~-~~---~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      .|..|+.....     .+.. +.   ........++|.|+|.+.++.
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            68888876431     1111 21   111234689999999755553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.06  E-value=0.059  Score=40.69  Aligned_cols=157  Identities=12%  Similarity=0.099  Sum_probs=85.6

Q ss_pred             cCCeeEEEEcCCCCcEEEEec------------CCCEEEEEecCCcc-cceee--cc-----CCcCeEEEEEcCC-CC--
Q psy11351         36 ERPVYGLSVDPSQDAIFASAC------------DDGRVLLFDTRSRE-EATEL--AV-----NSGPFHAVMFNPV-EA--   92 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~-~~~~~--~~-----~~~~i~~~~~~~~-~~--   92 (224)
                      .....++...|+| ..+++++            .+|.|.++|..+.. ....+  .+     ....-..+.+.++ ++  
T Consensus        49 ~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           49 DNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            3456788888887 5555542            78999999987431 11122  22     1235566666441 22  


Q ss_pred             CeEEEecC--CCcEEEEecCCCceeeEe----ec-CCCceeEEEEcCCCCeEeeeec---C------------CCcEEEE
Q psy11351         93 RLVATANS--KDGIALYDTRKPKEVLMQ----YG-SCESCMSIRFNKAGTQLLGLRR---R------------LPPVLYN  150 (224)
Q Consensus        93 ~~l~~~~~--dg~v~i~d~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~~~---d------------~~v~v~d  150 (224)
                      +++++-..  +..+.+|++.........    .+ .-.....+.+.++|.+.++...   |            ..-.+|.
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            34454333  567888877654222221    11 2345788999999987766431   1            1223333


Q ss_pred             CCCCCcceec-ccCCcccceeeeEEEEeCCCCe-EEEEcCCCCeEEEEeCCC
Q psy11351        151 TRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDE-YVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~v~iw~~~~  200 (224)
                      ...++ +... ..-...+     -++|+| +++ ++++-+..+.|..|++..
T Consensus       208 ~d~~~-~~~~~~~l~~pN-----Gia~sp-Dg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          208 YSPND-VRVVAEGFDFAN-----GINISP-DGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             ECTTC-CEEEEEEESSEE-----EEEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             EECCe-EEEeecCCcccC-----cceECC-CCCEEEEEeCCCCeEEEEEECC
Confidence            33332 2222 1111222     377888 565 455666788999999874

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.98  E-value=0.062  Score=39.63  Aligned_cols=181  Identities=11%  Similarity=0.046  Sum_probs=89.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-e--ccCCeeEEEEcCCCCcEEEEecC----CC-------EEEEEecCCcccc-
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-L--HERPVYGLSVDPSQDAIFASACD----DG-------RVLLFDTRSREEA-   72 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~l~s~~~----d~-------~i~iwd~~~~~~~-   72 (224)
                      .+++.|+.  .+..||..+++....- .  ....-.++ ...++ .+++.|+.    ++       .+..||..+.+-. 
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~-~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   92 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSI-VTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG   92 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEE-ECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEE
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEE-EEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEE
Confidence            45555553  4899999988755422 1  11122223 23444 67777773    12       2777888766522 


Q ss_pred             -eeeccCCcCeEEEEEcCCCCCeEEEecCC-------CcEEEEecCCCceeeEeecCCCc--eeEEEEcCCCCeEeeeec
Q psy11351         73 -TELAVNSGPFHAVMFNPVEARLVATANSK-------DGIALYDTRKPKEVLMQYGSCES--CMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        73 -~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~  142 (224)
                       ..+.........+.+   ++.+++.|+.+       ..+.+||+.+.+-. .......+  -.+++. .+++.++.|+.
T Consensus        93 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~  167 (318)
T 2woz_A           93 LPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYGHNVIS-HNGMIYCLGGK  167 (318)
T ss_dssp             CSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEESCEEEE-ETTEEEEECCE
T ss_pred             CCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCcccccEEEE-ECCEEEEEcCC
Confidence             112111112222222   45677777653       24788898865322 22111111  112222 35666666653


Q ss_pred             ------CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCC-----CeEEEEeCCCCC
Q psy11351        143 ------RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDD-----FVLYMWRVPRDD  202 (224)
Q Consensus       143 ------d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~v~iw~~~~~~  202 (224)
                            -..+.+||+.+.+-...-........  . .++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM--F-GVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--C-EEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCCCCccc--c-eEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence                  23588999887643222111111111  1 11121  57777777643     357788988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.93  E-value=0.13  Score=42.54  Aligned_cols=193  Identities=8%  Similarity=0.097  Sum_probs=100.4

Q ss_pred             cceEEEEEeCC----CcEEEEeCCCCceeeEE-e-------ccCCeeEEEEcC-CCCcEEEEecCC------CEEEEEec
Q psy11351          6 PIKVLRVIGND----DHVISHDMASGDPIDFY-L-------HERPVYGLSVDP-SQDAIFASACDD------GRVLLFDT   66 (224)
Q Consensus         6 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-------~~~~v~~~~~~~-~~~~~l~s~~~d------~~i~iwd~   66 (224)
                      .+.+++.|+.+    ..+.+||..+++....- .       ....-.+++..+ ++ .+++.|+.+      ..+.+||.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeC
Confidence            34567777653    35888888877654332 1       111122333333 55 677777654      35778888


Q ss_pred             CCccc--ceeeccCCcCeEEEEEcCCCCCeEEEecCCC--cEEEEecCCCceeeEe-----ecCCCceeEEEEcCC-CCe
Q psy11351         67 RSREE--ATELAVNSGPFHAVMFNPVEARLVATANSKD--GIALYDTRKPKEVLMQ-----YGSCESCMSIRFNKA-GTQ  136 (224)
Q Consensus        67 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~~  136 (224)
                      .+.+-  +..+...... .+++... ++.+++.|+.++  .+.+||+.+..-....     ........++.+..+ ++.
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            77542  2222211122 2333323 567888887654  6899999876422111     111222334566655 566


Q ss_pred             Eeeeec--C-----CCcEEEECCCCCc-----ceecccCCcccceeeeEEEEeCCCCeEEEEcCC--------CCeEEEE
Q psy11351        137 LLGLRR--R-----LPPVLYNTRSSSP-----VAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD--------DFVLYMW  196 (224)
Q Consensus       137 l~~~~~--d-----~~v~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--------d~~v~iw  196 (224)
                      ++.|+.  +     ..+.+||+.+...     -..+........... .++... ++.+++.|+.        ...+.+|
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~y  631 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYIT-PRKLLIVGGTSPSGLFDRTNSIISL  631 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEE-TTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeC-CCEEEEECCccCCCCCCCCCeEEEE
Confidence            666665  2     3478899887762     111111000111111 112221 3788888874        3468999


Q ss_pred             eCCCCCe
Q psy11351        197 RVPRDDI  203 (224)
Q Consensus       197 ~~~~~~~  203 (224)
                      |+.+.+-
T Consensus       632 d~~t~~W  638 (695)
T 2zwa_A          632 DPLSETL  638 (695)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCeE
Confidence            9987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.88  E-value=0.061  Score=47.84  Aligned_cols=194  Identities=7%  Similarity=-0.012  Sum_probs=110.8

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCC-cccceeeccC---
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRS-REEATELAVN---   78 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~---   78 (224)
                      .-+|.+.+++--...++.|+|+++.+.++.......|.-=.|-...  .|+-.+ +..|.-|++.. ..+++.+..|   
T Consensus        72 IMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             ccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            3345554554445789999999998888877666677777777553  555544 35899999964 3455555444   


Q ss_pred             -CcCeEEEEEcCCCCCeEEEec-------CCCcEEEEecCCCceeeEeecCCCceeEEEEc--CCC-CeEeeee---cCC
Q psy11351         79 -SGPFHAVMFNPVEARLVATAN-------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFN--KAG-TQLLGLR---RRL  144 (224)
Q Consensus        79 -~~~i~~~~~~~~~~~~l~~~~-------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l~~~~---~d~  144 (224)
                       ...|..-..++ +.++++..+       -.|.+.+|..... ....+.+|.+.-..+...  +.. ..++.+.   ..+
T Consensus       149 ~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~  226 (1630)
T 1xi4_A          149 AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (1630)
T ss_pred             ccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence             34566667777 666655332       4577889988754 233344444333222221  111 1222221   125


Q ss_pred             CcEEEECCCC---Ccce------ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        145 PPVLYNTRSS---SPVA------QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       145 ~v~v~d~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .++|.++...   .+..      .+-.+...+...+ .+..++ ....+..-+.-|.+.+||+.++..
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISE-KHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             eEEEEecCCCccCCCCCccccccccCCcccccCcce-EEEecc-ccCEEEEEecCceEEEEecccchh
Confidence            7888887432   1111      1111112222211 133444 455666677899999999999976

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.69  E-value=0.13  Score=38.85  Aligned_cols=102  Identities=11%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             cCCeeEEEEcCCCCc-EEEEecCCCEEEEEecCCccc---ceee----ccCCcCeEEEEEcCC---CCCeEEEecC----
Q psy11351         36 ERPVYGLSVDPSQDA-IFASACDDGRVLLFDTRSREE---ATEL----AVNSGPFHAVMFNPV---EARLVATANS----  100 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~---~~~~----~~~~~~i~~~~~~~~---~~~~l~~~~~----  100 (224)
                      -.....++|.|++ . +++ +...|.|++++.. ++.   +..+    .........++++|+   ++.++++-+.    
T Consensus        17 l~~P~~i~~~pdG-~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           17 LDHPWALAFLPDN-HGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             ESSEEEEEECSTT-CCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCCcEEEEEcCCC-CEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            3457899999998 6 554 4567999999853 321   1111    122346789999993   3444444322    


Q ss_pred             ---CCcEEEEecCCCc----eeeEe-ec------CCCceeEEEEcCCCCeEeee
Q psy11351        101 ---KDGIALYDTRKPK----EVLMQ-YG------SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus       101 ---dg~v~i~d~~~~~----~~~~~-~~------~~~~v~~~~~~~~~~~l~~~  140 (224)
                         ...|..|++....    ....+ ..      .......++|.|+|.+.++.
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence               2356666664321    11111 11      11224579999999655553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.66  E-value=0.045  Score=38.28  Aligned_cols=138  Identities=13%  Similarity=0.108  Sum_probs=74.6

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCC--------eeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERP--------VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT   73 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~   73 (224)
                      |+..+|.+.+.  .+|.+.-.+..+.+...-++-...        ..++.|.|++ .+.++  .||.|.-++..+.....
T Consensus        47 af~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~  121 (236)
T 1tl2_A           47 FLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDN  121 (236)
T ss_dssp             EECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCC
T ss_pred             EECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCc
Confidence            45566665555  677766666654322211111112        4789999998 66666  56999877753322111


Q ss_pred             ------ee-ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc------eeeEee-cCCCceeEEEEcCCCCeEee
Q psy11351         74 ------EL-AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK------EVLMQY-GSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        74 ------~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~l~~  139 (224)
                            .+ ..-=..+..+.|.| ++.+.+..  |+.++-....+..      ....+. ..-..-+-+.|.+++...++
T Consensus       122 Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v  198 (236)
T 1tl2_A          122 WIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  198 (236)
T ss_dssp             HHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             eeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEE
Confidence                  11 11113689999999 88888777  6665332222111      001111 11123344668888877766


Q ss_pred             eecCCCcEEEEC
Q psy11351        140 LRRRLPPVLYNT  151 (224)
Q Consensus       140 ~~~d~~v~v~d~  151 (224)
                      .  ++  ++|..
T Consensus       199 ~--~g--~~Y~~  206 (236)
T 1tl2_A          199 Q--GG--KFYED  206 (236)
T ss_dssp             E--TT--EEEEE
T ss_pred             e--CC--eEEec
Confidence            5  55  44543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.64  E-value=0.32  Score=42.83  Aligned_cols=206  Identities=10%  Similarity=0.016  Sum_probs=103.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeE--EeccCCeeEEEEcCCC-----CcEEEEecC-CCEEEEEecCCcccceeecc-CC
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDF--YLHERPVYGLSVDPSQ-----DAIFASACD-DGRVLLFDTRSREEATELAV-NS   79 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~-----~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~-~~   79 (224)
                      +++.++ ++.+.++++..++....  ......|.|+++.|..     ..+++.|.. |++++|+++.+.+.+....- ..
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~  603 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE  603 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC
Confidence            444444 67788888776543322  2456789999998643     268888886 99999999986554432211 11


Q ss_pred             cCeEEEEEcC-CCCCeEEEecCCCcEEEEecC--CCceee---EeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         80 GPFHAVMFNP-VEARLVATANSKDGIALYDTR--KPKEVL---MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        80 ~~i~~~~~~~-~~~~~l~~~~~dg~v~i~d~~--~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ....++.+.. .+..+|..|-.||.+.-+.+.  ++....   .+.+ ..++.-..+...+..-+.+..+....+|.-+ 
T Consensus       604 ~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-  681 (1158)
T 3ei3_A          604 IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-  681 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-
T ss_pred             CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-
Confidence            2233333321 134678888899998666554  332221   1222 2344444444444433333334444445433 


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCC-CeEEEEcCCCCeEEEEeCCCCCeEeeeeeeEeeCCceeEEEee
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQ-DEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRHGSLEVSILP  223 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~p  223 (224)
                      ++....--.-..+..    -+.|+... .+-++..+ ++.++|..+.+-+.+ .....+|+.+.-.+..+|
T Consensus       682 ~~l~~s~l~~~~v~~----~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~-~~~~ipL~~Tprri~y~~  746 (1158)
T 3ei3_A          682 HKLVFSNVNLKEVNY----MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKL-HIRTVPLYESPRKICYQE  746 (1158)
T ss_dssp             SSEEEEEBSSSCCCE----EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSE-EEEEEECSSEEEEEEEEG
T ss_pred             CceEEeccChHHhce----EeccCcccCCCcEEEEc-CCceEEEEecccCCe-eEEEEeCCCCceEEEEcC
Confidence            322211101111111    13343211 12233333 445999888665443 333344444444444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.56  E-value=0.16  Score=38.34  Aligned_cols=102  Identities=13%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceee---ccCCcCeEEEEEcCC---CCCeEEEecC---C----
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATEL---AVNSGPFHAVMFNPV---EARLVATANS---K----  101 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~~i~~~~~~~~---~~~~l~~~~~---d----  101 (224)
                      -.....++|.|++ .++++ ..++.|.++| .+++ .+..+   .........|+++|+   ++.++++-+.   +    
T Consensus        28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETT-EEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCC-eEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            3567899999998 55554 5569999997 3443 22211   122346889999993   2455444332   3    


Q ss_pred             CcEEEEecCCC-------ceeeE-eec-CCCceeEEEEcCCCCeEeee
Q psy11351        102 DGIALYDTRKP-------KEVLM-QYG-SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus       102 g~v~i~d~~~~-------~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~  140 (224)
                      ..|..|+....       +.+.. +.. .......++|.|+|.+.++.
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            56777776543       11111 111 11234679999999866654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.26  E-value=0.3  Score=38.25  Aligned_cols=98  Identities=10%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe---------ccCCeeEEEEcCC---CCcEEEEecC-----------
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL---------HERPVYGLSVDPS---QDAIFASACD-----------   57 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~---~~~~l~s~~~-----------   57 (224)
                      |++..+|+++++-...+.|++++..+++......         .......++|+|+   +..+.++-+.           
T Consensus        32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~  111 (454)
T 1cru_A           32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP  111 (454)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred             EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence            4566778766665444579888876555432221         2456779999995   4244444432           


Q ss_pred             -CCEEEEEecCCc-------ccce-eec-cCCcCeEEEEEcCCCCCeEEEec
Q psy11351         58 -DGRVLLFDTRSR-------EEAT-ELA-VNSGPFHAVMFNPVEARLVATAN   99 (224)
Q Consensus        58 -d~~i~iwd~~~~-------~~~~-~~~-~~~~~i~~~~~~~~~~~~l~~~~   99 (224)
                       ...|.-++...+       +.+. .+. .....-..|+|.| ++.++++.+
T Consensus       112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence             234555554322       1111 121 1123468999999 777666643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.25  E-value=0.24  Score=37.09  Aligned_cols=92  Identities=9%  Similarity=-0.020  Sum_probs=45.3

Q ss_pred             cceEEEEEeCC-CcEEEEeCCC--CceeeEEe---ccCCeeEEEEcCCCCcEEEEecC-C---------CEEEEEecCCc
Q psy11351          6 PIKVLRVIGND-DHVISHDMAS--GDPIDFYL---HERPVYGLSVDPSQDAIFASACD-D---------GRVLLFDTRSR   69 (224)
Q Consensus         6 ~~~~l~~~~~d-g~i~iwd~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~-d---------~~i~iwd~~~~   69 (224)
                      .+++++.|+.+ ..+.++|+.+  .+....-.   ....-.+++.. ++ .+++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DG-NLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TT-EEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CC-EEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            34566666543 4688899874  33322211   11111122222 34 67777776 2         46888998876


Q ss_pred             ccc--eeeccCCcCeEEEEEcCCCCCeEEEecCC
Q psy11351         70 EEA--TELAVNSGPFHAVMFNPVEARLVATANSK  101 (224)
Q Consensus        70 ~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  101 (224)
                      +-.  ..+......-.+++. . ++.+++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEE-E-CCEEEEEeCcC
Confidence            522  122211111122222 3 56788888754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.17  E-value=0.37  Score=39.96  Aligned_cols=150  Identities=13%  Similarity=0.067  Sum_probs=80.2

Q ss_pred             cceEEEEEeCCC------cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCC--EEEEEecCCccccee-
Q psy11351          6 PIKVLRVIGNDD------HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDG--RVLLFDTRSREEATE-   74 (224)
Q Consensus         6 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~-   74 (224)
                      .+++++.|+.++      .+.+||..+.+....-  .....-.+.+...++ .+++.|+.++  .+.+||..+.+-... 
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            556777777543      4788888876544322  111111223332355 6888887655  688999887652211 


Q ss_pred             ----eccCCcCeEEEEEcCCCCCeEEEecC--C-----CcEEEEecCCCce-----eeEeec---CCCceeEEEEcCCCC
Q psy11351         75 ----LAVNSGPFHAVMFNPVEARLVATANS--K-----DGIALYDTRKPKE-----VLMQYG---SCESCMSIRFNKAGT  135 (224)
Q Consensus        75 ----~~~~~~~i~~~~~~~~~~~~l~~~~~--d-----g~v~i~d~~~~~~-----~~~~~~---~~~~v~~~~~~~~~~  135 (224)
                          +........++.+....+.+++.|+.  +     ..+.+||+.+..-     ......   ....-.++....++.
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence                11112222345555523677777765  2     3588999987751     111111   111112223333366


Q ss_pred             eEeeeec--------CCCcEEEECCCCCc
Q psy11351        136 QLLGLRR--------RLPPVLYNTRSSSP  156 (224)
Q Consensus       136 ~l~~~~~--------d~~v~v~d~~~~~~  156 (224)
                      .++.|+.        ...+.+||+.+.+-
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            6676664        24588999887643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.05  E-value=0.32  Score=36.61  Aligned_cols=106  Identities=16%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceee----ccCCcCeEEEEEcCC---CCCeEEEe--cCCCc
Q psy11351         35 HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATEL----AVNSGPFHAVMFNPV---EARLVATA--NSKDG  103 (224)
Q Consensus        35 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~----~~~~~~i~~~~~~~~---~~~~l~~~--~~dg~  103 (224)
                      .-.....++|.|++ .++++--..|.|++++...++.  +..+    .........|+++|+   ++.++++-  ..++.
T Consensus        30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            34567899999998 6777766589999998655542  1111    223457899999993   24444431  23455


Q ss_pred             EEEEecCCC----------ceeeE-ee-cCCCceeEEEEcCCCCeEeeee
Q psy11351        104 IALYDTRKP----------KEVLM-QY-GSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus       104 v~i~d~~~~----------~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      |.-|.+...          +.+.. +. .....-..+.|.|+|.+.++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            666655431          11111 11 1122346799999998666643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.022  Score=42.64  Aligned_cols=109  Identities=13%  Similarity=0.113  Sum_probs=67.3

Q ss_pred             CeEEEecCCCcEEEEecCCCceeeEeecC-CCceeEEEEc--C-CCCeEeee-ecCCCcEEEECCCCCcceecccCCccc
Q psy11351         93 RLVATANSKDGIALYDTRKPKEVLMQYGS-CESCMSIRFN--K-AGTQLLGL-RRRLPPVLYNTRSSSPVAQFDHEGYYN  167 (224)
Q Consensus        93 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~d~~v~v~d~~~~~~~~~~~~~~~~~  167 (224)
                      .+++.++.||.|.-+|..+++....+... ..++....-.  + ++..++.. ..||.++.++..+|.....+.....+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47788889999999999999877766543 1222211100  1 22333333 589999999998885554442221111


Q ss_pred             ceeeeEEEEe-------C---CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        168 SCTMKSCCFA-------G---TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       168 ~~~~~~~~~~-------~---~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                         .+++...       +   ..+..+++|+.+|++...|+.+|+..
T Consensus        91 ---~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           91 ---TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             ---TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             ---ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence               1111110       0   03577899999999999999999884

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.44  E-value=0.31  Score=36.71  Aligned_cols=137  Identities=7%  Similarity=-0.008  Sum_probs=70.3

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeE-------E-eccCCeeEEEEcCC---CCcEEEEecC-------CCEEE
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDF-------Y-LHERPVYGLSVDPS---QDAIFASACD-------DGRVL   62 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~-~~~~~v~~~~~~~~---~~~~l~s~~~-------d~~i~   62 (224)
                      |++..+|+.+..+...|.|++++.. ++....       . ........++++|+   +..+.++-..       ...|.
T Consensus        23 i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~  101 (353)
T 2g8s_A           23 LAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG  101 (353)
T ss_dssp             EEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence            4566677724444567999999854 322111       1 12346789999995   4245544332       23566


Q ss_pred             EEecCCcc----cce----eec---cCCcCeEEEEEcCCCCCeEEEecC-------------CCcEEEEecCCCc-----
Q psy11351         63 LFDTRSRE----EAT----ELA---VNSGPFHAVMFNPVEARLVATANS-------------KDGIALYDTRKPK-----  113 (224)
Q Consensus        63 iwd~~~~~----~~~----~~~---~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~~-----  113 (224)
                      .+++..+.    ...    .+.   .....-..+.|.| ++.++++.+.             .|.|.-+|....-     
T Consensus       102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np  180 (353)
T 2g8s_A          102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP  180 (353)
T ss_dssp             EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred             EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence            66654321    111    111   1111235799999 7766665433             2456666654210     


Q ss_pred             -------eeeEeecCCCceeEEEEcC-CCCeEee
Q psy11351        114 -------EVLMQYGSCESCMSIRFNK-AGTQLLG  139 (224)
Q Consensus       114 -------~~~~~~~~~~~v~~~~~~~-~~~~l~~  139 (224)
                             ....+..--.....++|+| +|++.++
T Consensus       181 f~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          181 FIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             CcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence                   1111111123467899999 5554443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.39  E-value=0.6  Score=35.14  Aligned_cols=135  Identities=16%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCc-eeeEE----eccCCeeEEEEcCC---CCcEEEEecC---C----CEEEEEe
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGD-PIDFY----LHERPVYGLSVDPS---QDAIFASACD---D----GRVLLFD   65 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~----~~~~~v~~~~~~~~---~~~~l~s~~~---d----~~i~iwd   65 (224)
                      |++..+|++++ +..+|.|++++. +++ .+..+    ........++++|+   +..++++-+.   +    ..|..|+
T Consensus        34 ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~  111 (354)
T 3a9g_A           34 IAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR  111 (354)
T ss_dssp             EEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             EEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence            34555666444 456699999974 444 11111    12356889999997   4245444332   3    5677777


Q ss_pred             cCCc--c-----cc-eeecc-CCcCeEEEEEcCCCCCeEEEecC-------------CCcEEEEecCCC--------cee
Q psy11351         66 TRSR--E-----EA-TELAV-NSGPFHAVMFNPVEARLVATANS-------------KDGIALYDTRKP--------KEV  115 (224)
Q Consensus        66 ~~~~--~-----~~-~~~~~-~~~~i~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~--------~~~  115 (224)
                      ....  .     .+ ..+.. ....-..++|.| ++.++++.+.             .|.|.-++....        ...
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~  190 (354)
T 3a9g_A          112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP  190 (354)
T ss_dssp             ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC
T ss_pred             ECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc
Confidence            6543  1     11 11221 111246799999 7777766432             244555554321        001


Q ss_pred             eEeecCCCceeEEEEcC-CCCeEee
Q psy11351        116 LMQYGSCESCMSIRFNK-AGTQLLG  139 (224)
Q Consensus       116 ~~~~~~~~~v~~~~~~~-~~~~l~~  139 (224)
                      ....++ .....++|+| +++.+++
T Consensus       191 i~a~G~-rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          191 IWSYGH-RNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             EEEECC-SCCCEEEECTTTCCEEEE
T ss_pred             EEEEcc-CCcceEEEeCCCCCEEEE
Confidence            111223 2346799999 5655444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.25  E-value=0.81  Score=35.78  Aligned_cols=105  Identities=11%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceeec------cCCcCeEEEEEcCC---CCCeEEEecC----
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATELA------VNSGPFHAVMFNPV---EARLVATANS----  100 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~------~~~~~i~~~~~~~~---~~~~l~~~~~----  100 (224)
                      -.....++|.|+| .++++-...+.|++++..+++.  +..+.      ........|+|+|+   ++.++++-+.    
T Consensus        26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            3466799999998 6777665545788887654442  22221      12456789999994   3444444322    


Q ss_pred             --------CCcEEEEecCCC-------ceeeE-ee-cCCCceeEEEEcCCCCeEeeee
Q psy11351        101 --------KDGIALYDTRKP-------KEVLM-QY-GSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus       101 --------dg~v~i~d~~~~-------~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                              ...|.-|+....       +.+.. +. ........|+|.|+|.+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                    234555655322       11111 11 1223568899999998666543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.85  E-value=1.1  Score=35.02  Aligned_cols=140  Identities=11%  Similarity=0.097  Sum_probs=89.1

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCeeEEEEcC--CCCcEEEEecCC---CEEEEEecCCc---cc------ceeec---cC
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPVYGLSVDP--SQDAIFASACDD---GRVLLFDTRSR---EE------ATELA---VN   78 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d---~~i~iwd~~~~---~~------~~~~~---~~   78 (224)
                      .|.+.+|..+.+.....-+|.+....+...-  ...++++-+...   +.++|-++...   .+      +..+.   ..
T Consensus       178 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~  257 (494)
T 1bpo_A          178 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (494)
T ss_dssp             EEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred             cceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence            4678899998876665557766655554432  111344444332   79999998543   11      01111   11


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      .+---++..++ ....+..-+.-|.+++||+.++.++..-.-..+.|..-+.+....-++....+|.|.-..++....
T Consensus       258 ~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          258 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             TCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             cCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            22335777888 677788888999999999999988777666667776666665555556566777766666655433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.70  E-value=0.98  Score=33.95  Aligned_cols=137  Identities=12%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-------eccCCeeEEEEcCC---CCcEEEE--ecCCCEEEEEecCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-------LHERPVYGLSVDPS---QDAIFAS--ACDDGRVLLFDTRS   68 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~~l~s--~~~d~~i~iwd~~~   68 (224)
                      ||+..+|+++++--..|.|++++..+++.....       ........++++|+   +..+.++  ...+..|.-|....
T Consensus        37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A           37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred             EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence            456677777776655899999987666543221       23567899999995   3234443  23455666666554


Q ss_pred             cc--------cc---eeec-cCCcCeEEEEEcCCCCCeEEEecC-------------CCcEEEEecCCC--------cee
Q psy11351         69 RE--------EA---TELA-VNSGPFHAVMFNPVEARLVATANS-------------KDGIALYDTRKP--------KEV  115 (224)
Q Consensus        69 ~~--------~~---~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~v~i~d~~~~--------~~~  115 (224)
                      +.        ..   ..+. .....-..+.|.| ++.++++.+.             .|.|.-.+....        ...
T Consensus       117 ~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~  195 (347)
T 3das_A          117 KKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSP  195 (347)
T ss_dssp             TSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCC
T ss_pred             CCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCe
Confidence            21        11   1121 1112346799999 7777766432             244444444321        001


Q ss_pred             eEeecCCCceeEEEEcCCCCeEee
Q psy11351        116 LMQYGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      ..-.++ .....++|+|+|.+.++
T Consensus       196 i~a~G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          196 VYSYGH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             EEEBCC-SBCCEEEECTTCCEEEE
T ss_pred             EEeeCC-CCcceEEECCCCCEEEE
Confidence            111133 23567999998776554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.43  E-value=3  Score=34.82  Aligned_cols=177  Identities=10%  Similarity=0.108  Sum_probs=92.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec-----cCCcCe
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA-----VNSGPF   82 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~i   82 (224)
                      .|-.|+.+| +..||..+.+..... .....|.++.. .++ . |..++.+ -+..+|..+++.. .+.     .....|
T Consensus        75 ~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i  148 (758)
T 3ott_A           75 YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-T-LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI  148 (758)
T ss_dssp             EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-E-EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred             cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-c-EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence            344555554 778888776443211 12335666654 344 3 4445555 6778888765432 221     113468


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-----CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcc
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-----SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPV  157 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~  157 (224)
                      .++.... ++.+.+ |+.+ .+..||..+.+.......     ....|.++...+++..|..++.. -+..+|..+++..
T Consensus       149 ~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~  224 (758)
T 3ott_A          149 YSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIK  224 (758)
T ss_dssp             EEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEE
T ss_pred             EEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEE
Confidence            8888877 566555 3344 577888776532211111     12247888887777755555544 4888887765422


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                       .+..   ...-.+..+.... ++.+ ..|+.+ -+.+++..+++
T Consensus       225 -~~~~---l~~~~i~~i~~d~-~g~l-WigT~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          225 -QTEA---FHNNSIKSLALDG-NGDL-LAGTDN-GLYVYHNDTTP  262 (758)
T ss_dssp             -EEEE---EEEEEEEEEEECT-TCCE-EEEETT-EEEEECCTTSC
T ss_pred             -eccC---CCCCeEEEEEEcC-CCCE-EEEeCC-ceeEEecCCCc
Confidence             1210   0111122233332 3444 334444 47777766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.05  E-value=3.8  Score=37.11  Aligned_cols=143  Identities=11%  Similarity=0.198  Sum_probs=86.6

Q ss_pred             CCcEEEEeCCC-CceeeEE-ec----cCCeeEEEEcCCCCcEEE-Ee------cCCCEEEEEecCCcccceeeccCCcCe
Q psy11351         16 DDHVISHDMAS-GDPIDFY-LH----ERPVYGLSVDPSQDAIFA-SA------CDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus        16 dg~i~iwd~~~-~~~~~~~-~~----~~~v~~~~~~~~~~~~l~-s~------~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      +..|.-|++.. ..+.+.+ .|    ...|..-..+++. ++++ +|      .-.|.+.+|.++.+. .+.+.+|....
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F  201 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF  201 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhh
Confidence            45799999974 3455555 33    4566666778887 5554 33      245889999887553 44556665544


Q ss_pred             EEEEEc--CCCCCeEEEec---CCCcEEEEecCCC---ceeeE------eec---CCCceeEEEEcCCCCeEeeeecCCC
Q psy11351         83 HAVMFN--PVEARLVATAN---SKDGIALYDTRKP---KEVLM------QYG---SCESCMSIRFNKAGTQLLGLRRRLP  145 (224)
Q Consensus        83 ~~~~~~--~~~~~~l~~~~---~dg~v~i~d~~~~---~~~~~------~~~---~~~~v~~~~~~~~~~~l~~~~~d~~  145 (224)
                      ..+...  +....+++.+.   ..++++|.++...   .....      +..   ..+...++..++.-..++.-+.-|.
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~  281 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence            333332  11122333222   2378999988543   11110      111   2334456777887778888888999


Q ss_pred             cEEEECCCCCcceec
Q psy11351        146 PVLYNTRSSSPVAQF  160 (224)
Q Consensus       146 v~v~d~~~~~~~~~~  160 (224)
                      +++||+.++..+..-
T Consensus       282 ~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          282 IHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecccchhhhhc
Confidence            999999999887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.98  E-value=3  Score=33.65  Aligned_cols=122  Identities=7%  Similarity=-0.036  Sum_probs=77.7

Q ss_pred             cEEEEeCCC----Ccee-eEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc-------------ceeeccCC
Q psy11351         18 HVISHDMAS----GDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-------------ATELAVNS   79 (224)
Q Consensus        18 ~i~iwd~~~----~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------~~~~~~~~   79 (224)
                      .|.+.|...    +..+ ..+.-......+.++|+|...++++-.+.++.++|+++-..             ....+. .
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C
Confidence            477888766    3333 33366677788999999966677788899999999975321             111121 2


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCC----------ceeeEeecCCCceeEE-----EEcCCCCeEeeee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKP----------KEVLMQYGSCESCMSI-----RFNKAGTQLLGLR  141 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~----------~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~  141 (224)
                      ..-...+|.+ +++...+---|..|..|++...          ..+..+.-|..+-.-.     .-.|+|++|++..
T Consensus       378 lGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          378 LGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             SCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             CcccEEEECC-CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            2457789999 7766666668999999998743          1222233233222111     1257888888864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.32  E-value=5.1  Score=34.64  Aligned_cols=37  Identities=14%  Similarity=0.095  Sum_probs=31.7

Q ss_pred             ceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec
Q psy11351        124 SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       124 ~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~  160 (224)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4566777788889999999999999999999877765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.84  E-value=3.8  Score=32.14  Aligned_cols=106  Identities=11%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc---cceeec---------cCCcCeEEEEEcCC---CCCeEEEecC-
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE---EATELA---------VNSGPFHAVMFNPV---EARLVATANS-  100 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~---------~~~~~i~~~~~~~~---~~~~l~~~~~-  100 (224)
                      .....|+|.|++...++.+...|.|++++.....   .+..+.         ..+.....|+|+|+   ++.++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567999999983245556678999999754221   122111         11456889999993   1344443221 


Q ss_pred             -C----------CcEEEEecCC----------CceeeEee--cCCCceeEEEEcCCCCeEeeeec
Q psy11351        101 -K----------DGIALYDTRK----------PKEVLMQY--GSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus       101 -d----------g~v~i~d~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                       +          ..|.-|.+..          .+.+..+.  .....-..|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1344455532          12222222  12234678999999976665443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.26  E-value=5.4  Score=34.48  Aligned_cols=37  Identities=5%  Similarity=0.109  Sum_probs=30.6

Q ss_pred             CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee
Q psy11351         38 PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL   75 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   75 (224)
                      .+.++...++. .++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeee
Confidence            56677777776 79999999999999999999876654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.66  E-value=3.6  Score=29.76  Aligned_cols=166  Identities=10%  Similarity=0.037  Sum_probs=79.9

Q ss_pred             CCcEEEEeCCCCceeeE-EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         16 DDHVISHDMASGDPIDF-YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      ||.|..|-.+..-.+-. ..-...|..++.-...  .++. . ||.|..|-......+..-......|..++.-.   ..
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h--s~al-~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~---~~  152 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA--SYAL-K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV---YT  152 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE--EEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS---SE
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE--EEEE-e-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc---CE
Confidence            77777776553211110 1123467777766443  2332 3 88999997654322211112234577776543   22


Q ss_pred             EEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeE
Q psy11351         95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKS  173 (224)
Q Consensus        95 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~  173 (224)
                      .+.-. ||.|..|-......+.........|..++...+.. ++.  .|+.|+.|=......+..- .....+..+.   
T Consensus       153 ~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~---  225 (282)
T 3qhy_B          153 ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIA---  225 (282)
T ss_dssp             EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEE---
T ss_pred             EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEE---
Confidence            22333 68888887654322211111234566666544322 233  5888999865443222111 1112232222   


Q ss_pred             EEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        174 CCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       174 ~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                        .   .....+.-. ||.|+.|-....
T Consensus       226 --~---G~~h~~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          226 --S---GEWYSLALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             --E---CSSCEEEEE-TTEEEEESTTCC
T ss_pred             --c---CCCEEEEEE-CCEEEEecCCCC
Confidence              2   222222223 899999966543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.88  E-value=4.3  Score=29.38  Aligned_cols=165  Identities=8%  Similarity=0.034  Sum_probs=84.8

Q ss_pred             CCcEEEEeCCCCceeeE-EeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         16 DDHVISHDMASGDPIDF-YLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      ||+|..|-.+..-.+.. ......|..++.....  .++. . ||.+..|-......+..-..-...|..++...   .+
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~h  113 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WA  113 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CE
Confidence            89999997654321111 1223467777776543  3444 4 89999997654322211111134677777654   34


Q ss_pred             EEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeE
Q psy11351         95 VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKS  173 (224)
Q Consensus        95 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~  173 (224)
                      .+.-. +|.|..|-......+.........|..++...+.  .+.-. |+.|+.|-.....++... .....+..     
T Consensus       114 s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~-----  184 (282)
T 3qhy_B          114 SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDD-----  184 (282)
T ss_dssp             EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEE-----
T ss_pred             EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEE-----
Confidence            44444 8999999765432221111223456666554432  22223 688888866543222111 11122222     


Q ss_pred             EEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        174 CCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       174 ~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      ++..  ....++.  .||.|+.|-...
T Consensus       185 i~~G--~~hs~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          185 VAGG--IFHSLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             EEEC--SSEEEEE--ETTEEEEEECCT
T ss_pred             EEec--CCEEEEE--ECCeEEEEECCC
Confidence            2221  2233444  599999997654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.94  E-value=0.9  Score=36.55  Aligned_cols=77  Identities=6%  Similarity=-0.028  Sum_probs=50.8

Q ss_pred             CceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCc-----c----eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCe
Q psy11351        123 ESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSP-----V----AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFV  192 (224)
Q Consensus       123 ~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  192 (224)
                      .....+..+|||+++++++ .+.++.++|.+....     +    ... ....-..+.-...+|.+ ++....|--.|.+
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~-~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVI-VGEPELGLGPLHTTFDG-RGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGE-EECCBCCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccce-EeeccCCCcccEEEECC-CCceEeeeeecce
Confidence            4456789999999988876 577899999874211     1    111 00111122233467877 6777888889999


Q ss_pred             EEEEeCCCC
Q psy11351        193 LYMWRVPRD  201 (224)
Q Consensus       193 v~iw~~~~~  201 (224)
                      |.-|++...
T Consensus       401 vvkWni~~a  409 (638)
T 3sbq_A          401 VVKWNMEEA  409 (638)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEeccHH
Confidence            999999753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.00  E-value=7.4  Score=29.66  Aligned_cols=161  Identities=11%  Similarity=0.178  Sum_probs=93.3

Q ss_pred             CCeeEEEEcCCCCcEEEEecC--------------CCEEEEEecCCc--ccceeecc------CCcCeEEEEEc---CC-
Q psy11351         37 RPVYGLSVDPSQDAIFASACD--------------DGRVLLFDTRSR--EEATELAV------NSGPFHAVMFN---PV-   90 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~--------------d~~i~iwd~~~~--~~~~~~~~------~~~~i~~~~~~---~~-   90 (224)
                      -.|..+...+.+.-+++=.+.              --+|.+||+.++  +.++.+.-      ..+.+..+.+.   |. 
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            357777777766222222111              236889999999  77666532      23467888887   21 


Q ss_pred             --CCCeEEEe-cCCCcEEEEecCCCceeeEee----c--------------CCCceeEEEEcCC----CCeEeeeecCCC
Q psy11351         91 --EARLVATA-NSKDGIALYDTRKPKEVLMQY----G--------------SCESCMSIRFNKA----GTQLLGLRRRLP  145 (224)
Q Consensus        91 --~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~----~--------------~~~~v~~~~~~~~----~~~l~~~~~d~~  145 (224)
                        +..++..+ +....|.+||+.+++......    .              -...+..++++|+    ++.|+-....+ 
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-  245 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-  245 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-
Confidence              13343333 356789999999876543321    0              0246788999998    67777665544 


Q ss_pred             cEEEECCC-----C---CcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        146 PVLYNTRS-----S---SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       146 v~v~d~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      -++|.+.+     .   ..+..++..+....  -...+..+.++.++++--....|..|+..+
T Consensus       246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~--~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          246 IKVYSVNTKELKQKGGKLNPELLGNRGKYND--AIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             SEEEEEEHHHHSSTTCCCCCEEEEECCTTCC--EEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             CcEEEEEHHHhhCcchhhceEEeeecCCCCC--cceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            35555432     1   12222222221111  111333333688888888889999999876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.25  E-value=12  Score=31.22  Aligned_cols=137  Identities=12%  Similarity=0.100  Sum_probs=79.2

Q ss_pred             EEeCCCcEEEEeCCCCceeeEE--e-----ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-----ccc---eeec
Q psy11351         12 VIGNDDHVISHDMASGDPIDFY--L-----HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-----EEA---TELA   76 (224)
Q Consensus        12 ~~~~dg~i~iwd~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~---~~~~   76 (224)
                      .|+ ++-+..+|.++++.....  .     ....|.++...+++ . |-.|+..+-+.++|.++.     ...   ..+.
T Consensus       388 igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  464 (758)
T 3ott_A          388 IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-Q-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS  464 (758)
T ss_dssp             EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS-E-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred             EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-C-EEEEECCCceEEEccccccccCCcceecccccc
Confidence            344 456888998887654432  1     23458888877776 4 444555556777885431     111   1111


Q ss_pred             ---c-CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC----CCceeEEEEcCCCCeEeeeecCCCcEE
Q psy11351         77 ---V-NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS----CESCMSIRFNKAGTQLLGLRRRLPPVL  148 (224)
Q Consensus        77 ---~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~v~v  148 (224)
                         + ....|.++...+ ++.+.+.++..+.+..+|..+.+. ..+...    ...+.++....+|...+. +.+| +..
T Consensus       465 ~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~  540 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREV-TKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMR  540 (758)
T ss_dssp             GGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEE-EEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEE
T ss_pred             cccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCce-EEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEE
Confidence               1 123588998888 677666333345688889876643 333211    235677877777776654 4455 888


Q ss_pred             EECCCCC
Q psy11351        149 YNTRSSS  155 (224)
Q Consensus       149 ~d~~~~~  155 (224)
                      ++..+++
T Consensus       541 ~~~~~~~  547 (758)
T 3ott_A          541 INPKDES  547 (758)
T ss_dssp             ECC--CC
T ss_pred             EecCCCc
Confidence            8876554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=84.80  E-value=9.6  Score=27.88  Aligned_cols=127  Identities=6%  Similarity=0.048  Sum_probs=66.6

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC-------------CEEEEEecCCcccceeeccCCcCe
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD-------------GRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      ++.|...+.+.....+....  .  +--+++++..+..+...+             ..|+..++...+.. .+..  .. 
T Consensus        36 ~~~ly~~~~dg~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~-  107 (302)
T 3s25_A           36 NGRLYAMNIDGSNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP-  107 (302)
T ss_dssp             TTEEEEEETTSCSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC-
T ss_pred             CceEEEEcCCCCCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC-
Confidence            45566666655554444322  1  234567774344443332             46777777665432 2222  12 


Q ss_pred             EEEEEcCCCCCeEEEec----CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CCCcEEEECCCCCcc
Q psy11351         83 HAVMFNPVEARLVATAN----SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRSSSPV  157 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~~~~~  157 (224)
                       ...|++ .+..|+-..    .+..|...++... ....+..+..    ..++++++.|+-.+. ...|.+.++..+...
T Consensus       108 -~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          108 -CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA  180 (302)
T ss_dssp             -EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred             -ccEEEE-eCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence             225666 555555443    3344555565533 3344443322    456788888876654 566777777665433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=84.06  E-value=10  Score=27.69  Aligned_cols=162  Identities=9%  Similarity=0.030  Sum_probs=81.8

Q ss_pred             CcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec----CCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCC
Q psy11351         17 DHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC----DDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEA   92 (224)
Q Consensus        17 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~   92 (224)
                      ..|+..++...+......  ..  ...|++++ +.|+-..    .+..|...++.... ...+..+..    ..+++.+.
T Consensus        88 ~~Iy~i~~dg~~~~~l~~--~~--~~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~  157 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDP--DP--CIYASLIG-NYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDR  157 (302)
T ss_dssp             EEEEEEETTSCCCEEEEC--SC--EEEEEEET-TEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETT
T ss_pred             CeEEEEeCCCCcceEeec--CC--ccEEEEeC-CEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECC
Confidence            467777887766444332  22  23567777 4554433    44566666665333 334433322    34566344


Q ss_pred             CeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC--CcEEEECCCCCcceecccCCccccee
Q psy11351         93 RLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL--PPVLYNTRSSSPVAQFDHEGYYNSCT  170 (224)
Q Consensus        93 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~v~d~~~~~~~~~~~~~~~~~~~~  170 (224)
                      .++.+......|...++...... .+..  +... ..+.|++.+|+-...++  .|..-++.... ...+.. ..+    
T Consensus       158 ~iy~t~~g~~~Iy~~~l~g~~~~-~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~-~~~----  227 (302)
T 3s25_A          158 YFYYNNPKNGQLYRYDTASQSEA-LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE-ANI----  227 (302)
T ss_dssp             EEEEECTTTCCEEEEETTTTEEE-EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC-SCE----
T ss_pred             EEEEEeCCCceEEEEECCCCCEE-EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC-CCc----
Confidence            44445444677888887765433 3332  2222 34568999888765443  34444555433 233321 111    


Q ss_pred             eeEEEEeCCCCeEEEEc--CCCCeEEEEeCCCCC
Q psy11351        171 MKSCCFAGTQDEYVVSG--SDDFVLYMWRVPRDD  202 (224)
Q Consensus       171 ~~~~~~~~~~~~~l~s~--~~d~~v~iw~~~~~~  202 (224)
                         ..+.| ++.+|.-+  ...+.|..-++....
T Consensus       228 ---~~~~~-~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          228 ---EHYNV-YGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             ---EEEEE-ETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             ---ceEEE-CCCEEEEEECCCCcEEEEEECCCCc
Confidence               12444 34444432  334567776766543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=80.18  E-value=17  Score=27.44  Aligned_cols=163  Identities=12%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             CeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc-----C--------CcCeEEEEEcCCCCCeEEEecCCCcE
Q psy11351         38 PVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV-----N--------SGPFHAVMFNPVEARLVATANSKDGI  104 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~--------~~~i~~~~~~~~~~~~l~~~~~dg~v  104 (224)
                      .+.++.++|..+..+..+..++-|...+ ..++....+..     +        ...+.++.++|.++..+..+...+ |
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l  255 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I  255 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence            5788999985434444454444444332 12222111110     0        124889999985456666665544 4


Q ss_pred             EEEecCCCceeeEeec--CC---CceeEEEEcCC-CCeEeeeec-----------CCCcEEEECCC-CCcceecc--cCC
Q psy11351        105 ALYDTRKPKEVLMQYG--SC---ESCMSIRFNKA-GTQLLGLRR-----------RLPPVLYNTRS-SSPVAQFD--HEG  164 (224)
Q Consensus       105 ~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~-~~~l~~~~~-----------d~~v~v~d~~~-~~~~~~~~--~~~  164 (224)
                      ...+- .++.-..+..  ..   ..+..+.++|. ...+.++..           ++...+|.... ++.-..+.  ...
T Consensus       256 ~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~  334 (394)
T 3b7f_A          256 YRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT  334 (394)
T ss_dssp             EEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred             EEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence            33331 1222222211  11   34567888763 344444432           23345665543 33333321  111


Q ss_pred             --cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        165 --YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       165 --~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                        ....+....++++|.+...|+.++.++.|.. ....++-+
T Consensus       335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~-S~D~G~tW  375 (394)
T 3b7f_A          335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA-SADEGEHW  375 (394)
T ss_dssp             SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE-ESSTTSBC
T ss_pred             ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE-ECCCCCCc
Confidence              0000001235566644455666665665543 23445444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-08
 Identities = 27/201 (13%), Positives = 63/201 (31%), Gaps = 21/201 (10%)

Query: 18  HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV 77
            V   D+ +G        E  V  ++V P      A+   D  V ++D+ +      L  
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245

Query: 78  N-------SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCM---- 126
                       ++V+F   + + V + +    + L++ +                    
Sbjct: 246 ENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 127 --------SIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFA 177
                   S+   +    +L   +    + ++ +S +P+     H     S  + +    
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 178 GTQDEYVVSGSDDFVLYMWRV 198
           G +     +GS D    +W+ 
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 2   ASGDPIKVLRVIGNDDHVISHDMASGDPI-DFYLHERPVYGLSVDPSQDAIFASACDDGR 60
            SG P   L     D  +   D+++G  +     H+  V G+           S  DD  
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKT 270

Query: 61  VLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
           + ++D +++     L  +     ++ F+   A  V T  S D  + +++
Sbjct: 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTG-SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 8   KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
             +     D  +   ++ +G  +  +   R    +        + AS  +D  V ++   
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 68  SREEATELAVNSGPFHAVMFNPVEARLVAT------------------ANSKDG-IALYD 108
           ++E   EL  +      + + P  +    +                  + S+D  I ++D
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233

Query: 109 TRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYN 167
                 ++   G       + F+  G  +L         +++ ++   +   + HE +  
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 293

Query: 168 SCTMKSCCFAGTQDEYVVSGSDDFVLYMW 196
           S              YVV+GS D  + +W
Sbjct: 294 SLDFHKT------APYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 7/164 (4%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
           H  PV  +   P    +  SA +D  + ++D  + +    L  ++     + F+      
Sbjct: 16  HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL- 73

Query: 95  VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
           +A+ ++   I L+D +  + +   +G   +  S+     G  ++   R     ++  ++ 
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
             V  F     +      +          + S S+D  + +W V
Sbjct: 134 YCVKTFTGHREWVRMVRPNQD-----GTLIASCSNDQTVRVWVV 172

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 3/135 (2%)

Query: 5   DPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLF 64
              +    +    HV+     + +     + E                 S   D  + ++
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232

Query: 65  DTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYDTRKPKEVLMQYGSCE 123
           D  +      L  +      V+F+     +++   + D  + ++D +  + +        
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC--ADDKTLRVWDYKNKRCMKTLNAHEH 290

Query: 124 SCMSIRFNKAGTQLL 138
              S+ F+K    ++
Sbjct: 291 FVTSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 13/164 (7%), Positives = 44/164 (26%), Gaps = 16/164 (9%)

Query: 51  IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR 110
              SA  D  + +++ ++         +      V  N  +  L+A+ ++   + ++   
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVA 173

Query: 111 KPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCT 170
             +              I +    +              + +    +     +       
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233

Query: 171 MKS---------------CCFAGTQDEYVVSGSDDFVLYMWRVP 199
           + +                    +  ++++S +DD  L +W   
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 6/147 (4%)

Query: 51  IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDT 109
           +F S   D    L+D R          +    +A+ F P        + ++   +     
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 110 RKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSC 169
            +               S+ F+K+G  LL         +++   +         G+ N  
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRV 315

Query: 170 TMKSCCFAGTQDEYVVSGSDDFVLYMW 196
           +             V +GS D  L +W
Sbjct: 316 S--CLGVT-DDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 12  VIGNDDHVI----SHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTR 67
             G+DD                         +  +S   S   +  +  DD    ++D  
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDAL 300

Query: 68  SREEATELAVNSGPFHAVMFNPVEARLVATANSKDG-IALYD 108
             + A  LA +      +     +   VAT  S D  + +++
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTD-DGMAVATG-SWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 93  RLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR 152
           RL  +        L+D R+        G      +I F   G             L++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP 199
           +   +  + H+      T  S  F+ +    +++G DDF   +W   
Sbjct: 257 ADQELMTYSHDNIICGIT--SVSFSKS-GRLLLAGYDDFNCNVWDAL 300

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 5e-05
 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 6   PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFD 65
           P    ++ G  + +  +D+     I     +   Y ++ D   D +         + +F+
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKL-YLGGTFNDLAVFN 319

Query: 66  TRSREEATELAVNSGP 81
             + E+   + +  G 
Sbjct: 320 PDTLEKVKNIKLPGGD 335

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 20/176 (11%), Positives = 39/176 (22%), Gaps = 11/176 (6%)

Query: 41  GLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF-HAVMFNPVEARLVATAN 99
           G ++    +           + + D  S        +         M  P         N
Sbjct: 1   GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 100 SKDGIALYDTRKPKEVLM------QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS 153
               I   D    K                S  S   +  G ++         +  +   
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 154 S-SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD 208
               +  F               F   +  Y++  +DD  LY+       + V + 
Sbjct: 120 KPPRLEVFSTADG--LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 10/124 (8%), Positives = 32/124 (25%), Gaps = 1/124 (0%)

Query: 51  IFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR 110
            + +  +   + + D  S +    + V S P    + +P   ++       + +++ DT 
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 111 KPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCT 170
               +                      +         + +T S++               
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122

Query: 171 MKSC 174
           +   
Sbjct: 123 LSPD 126

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 22  HDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP 81
            D  +              G++V P    ++ +      V + DT +      +AV   P
Sbjct: 229 IDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

Query: 82  F 82
           +
Sbjct: 289 Y 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 48  QDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALY 107
           ++    +  D G++ L D  + E  T L       H    +    R +        + + 
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSA-SGRYLFVIGRDGKVNMI 88

Query: 108 D--TRKPKEVL 116
           D   ++P  V 
Sbjct: 89  DLWMKEPTTVA 99

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 47  SQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIAL 106
             +    +  D G++ L D  S++    +       H    +    R +        I +
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSA-SGRYLLVIGRDARIDM 87

Query: 107 YD--TRKPKEVL 116
            D   ++P +V 
Sbjct: 88  IDLWAKEPTKVA 99

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 14  GNDDHVISHDMASGDPIDFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEA 72
                V+  D  +G+ +  +     +  ++V    +  ++A +  D  + + D  S EE 
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336

Query: 73  TELA-VNSGPFHAVMFNP 89
             +  +  GP   +    
Sbjct: 337 RSVNQLGHGP-QVITTAD 353

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 2/82 (2%)

Query: 52  FASACDDGRVLLFDTRSREEATELAVNSGPF--HAVMFNPVEARLVATANSKDGIALYDT 109
             +     ++++ DT        + +          M  P      AT N  + +   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 110 RKPKEVLMQYGSCESCMSIRFN 131
              + +     S          
Sbjct: 64  VTGETLGRIDLSTPEERVKSLF 85

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 17  DHVISHDMASGDPIDFYLHERPVYGLSVDP-SQDAIFASACDDGRVLLFDTRSREEATEL 75
           ++  S   + G       +      +          +A++     + ++D  S ++ + +
Sbjct: 294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

Query: 76  AVNSGP 81
            ++ GP
Sbjct: 354 ELDKGP 359

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 4/180 (2%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL 94
           H   V    +    +    +  DD  + ++D+ +++   +L+ + G   A+ +      +
Sbjct: 11  HMTSVIT-CLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 95  VATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS 154
             + +    +          V   + S   C+ I   K    ++   R     ++     
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 155 SPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSDIYVCRH 214
           S V     E  Y                 V+ G    V  +       +  S D  +   
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEEN--PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 148 LYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV 198
           +++  +S  V ++  +        +      T +  ++S S D  L  + +
Sbjct: 277 VWDVTTSKCVQKWTLDK--QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 18/186 (9%), Positives = 47/186 (25%), Gaps = 7/186 (3%)

Query: 35  HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN---SGPFHAVMFNPVE 91
            +  +  + + PS+  +      DG + ++    + +  +L  +     P     F    
Sbjct: 10  PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 92  ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPV---L 148
              +     +  I   D            +  +    R  K G   L        +    
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 149 YNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIYVSSD 208
                   +A  +          K           +V  ++  V +      +D   + +
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 209 IYVCRH 214
               ++
Sbjct: 189 ESGLKY 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.06
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.01
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.95
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.9
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.75
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.67
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.12
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.01
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.8
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.71
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.64
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.41
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.36
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.24
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.08
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.98
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.33
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.28
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.27
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.04
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.54
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.35
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.27
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.73
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.16
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.37
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.25
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	81.88
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	80.55

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.3e-37  Score=226.93  Aligned_cols=196  Identities=16%  Similarity=0.164  Sum_probs=170.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceee--EE-eccCCeeEEEEcCCCCcEEEEecC--CCEEEEEecCCcccceeec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPID--FY-LHERPVYGLSVDPSQDAIFASACD--DGRVLLFDTRSREEATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~   76 (224)
                      +..+++++|++|+.||+|+|||+.+++...  .+ .|..+|.+++|+|++ +++++++.  +..+++|++++++....+.
T Consensus        65 ~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~  143 (311)
T d1nr0a1          65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLT  143 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred             EEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc-ccccccccccccccccccccccccccccc
Confidence            456789999999999999999999876543  33 799999999999998 78888875  4569999999999999999


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSP  156 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~  156 (224)
                      +|...|.+++|+|++...+++|+.|+.|++||+++.+.......|...|+++.|+|+++++++++.|+.+++||+++++.
T Consensus       144 ~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccc
Confidence            99999999999994445688999999999999999988888888999999999999999999999999999999998877


Q ss_pred             ceecc--------cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        157 VAQFD--------HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       157 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...+.        |.+.     +..++|+| ++++|++|+.||.|++||++++++.
T Consensus       224 ~~~~~~~~~~~~~h~~~-----V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         224 TGVFEDDSLKNVAHSGS-----VFGLTWSP-DGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             EEECBCTTSSSCSSSSC-----EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccccccccccccccccc-----ccccccCC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            66652        2333     44578888 7899999999999999999999775

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-36  Score=223.56  Aligned_cols=189  Identities=19%  Similarity=0.237  Sum_probs=159.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEe--------------
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFD--------------   65 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--------------   65 (224)
                      |++++.+++|++|+.||+|+|||+.+++.+..+ .|...|.+++|+|++ +++++|+.|+.+++|+              
T Consensus        61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  139 (340)
T d1tbga_          61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEE
T ss_pred             EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceec
Confidence            356778899999999999999999999988877 799999999999987 5666665555555554              


Q ss_pred             -------------------------------------------------------------------------cCCcccc
Q psy11351         66 -------------------------------------------------------------------------TRSREEA   72 (224)
Q Consensus        66 -------------------------------------------------------------------------~~~~~~~   72 (224)
                                                                                               +++++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~  219 (340)
T d1tbga_         140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR  219 (340)
T ss_dssp             CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEE
Confidence                                                                                     4444444


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      ..+.+|...|++++|+| ++.+|++|+.|+.|++||++..+....+.  .+...+.+++|+|++++|++++.|+.|++||
T Consensus       220 ~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd  298 (340)
T d1tbga_         220 QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEE
T ss_pred             EEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEE
Confidence            46677889999999999 88999999999999999999887665554  4667899999999999999999999999999


Q ss_pred             CCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        151 TRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      +.+++++..+ .|.+.|.+     ++|+| ++.+|++|+.||.|++||
T Consensus       299 ~~~~~~~~~~~~H~~~V~~-----l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         299 ALKADRAGVLAGHDNRVSC-----LGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTTCCEEEEECCCSSCEEE-----EEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCCCcEEEEEcCCCCCEEE-----EEEeC-CCCEEEEEccCCEEEEeC
Confidence            9999999888 57776655     66777 799999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=215.27  Aligned_cols=195  Identities=15%  Similarity=0.199  Sum_probs=170.6

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCcee---eEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc--ccc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPI---DFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR--EEA   72 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~   72 (224)
                      |++++++++|++|+ ||.|+|||+.+.+..   ...   +|.+.|.+++|+|++ ++|++|+.|+.|++||+...  +..
T Consensus        57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~~~  134 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIK  134 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEE
T ss_pred             EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeecccccccccccccccccc
Confidence            35678899999997 899999999765422   222   789999999999998 89999999999999998754  345


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      ..+..|...+.+++|+| ++.++++++.++.+++||+++++.......|...+.+++|++++..+++++.|+.+++||++
T Consensus       135 ~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~  213 (337)
T d1gxra_         135 AELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66778899999999999 88999999999999999999998888888899999999999999999999999999999999


Q ss_pred             CCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        153 SSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++.+..+.+.+.+.+     ++|+| ++++|++++.|+.+++||+++++..
T Consensus       214 ~~~~~~~~~~~~~i~~-----l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~  259 (337)
T d1gxra_         214 EGRQLQQHDFTSQIFS-----LGYCP-TGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             TTEEEEEEECSSCEEE-----EEECT-TSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             cceeecccccccceEE-----EEEcc-cccccceeccccccccccccccccc
Confidence            9998888877776654     56677 7899999999999999999988764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.7e-34  Score=211.05  Aligned_cols=195  Identities=14%  Similarity=0.158  Sum_probs=168.8

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc--eeecc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA--TELAV   77 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~   77 (224)
                      ||.++.|+.|+.+. ++.|.+||+++.+....+ +|...|++++|+|++ ++|++|+.||+|++||+++++..  ..+..
T Consensus        23 ~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~~~~~~~~~  100 (311)
T d1nr0a1          23 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPV  100 (311)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecccccccccccc
Confidence            45677888888875 667999999998888877 899999999999998 89999999999999999987654  45778


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecC--CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCe-EeeeecCCCcEEEECCCC
Q psy11351         78 NSGPFHAVMFNPVEARLVATANS--KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQ-LLGLRRRLPPVLYNTRSS  154 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~v~d~~~~  154 (224)
                      |..+|.+++|+| ++.++++++.  +..+++|++++++....+..|...|.+++|+|++++ +++++.|+.|++||++++
T Consensus       101 ~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         101 FSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             SSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             ccCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccc
Confidence            999999999999 8888888875  456999999998888888889999999999999886 778899999999999998


Q ss_pred             Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        155 SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +....+ .|...+.+     +.|+| +++++++++.|+.|++||..+++..
T Consensus       180 ~~~~~~~~~~~~i~~-----v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         180 KFKSTFGEHTKFVHS-----VRYNP-DGSLFASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             EEEEEECCCSSCEEE-----EEECT-TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccccccccccc-----cccCc-ccccccccccccccccccccccccc
Confidence            888777 46666554     66777 7999999999999999999988764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-34  Score=216.46  Aligned_cols=195  Identities=11%  Similarity=0.124  Sum_probs=160.8

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce--eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc--ceeec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP--IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE--ATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~   76 (224)
                      |.++++++||+|+.||.|+|||.++++.  +..+ +|.++|++++|+|++ ++|++|+.|++|++||++++..  ...+.
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~   92 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVIL   92 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecccccccccccc
Confidence            5678899999999999999999987763  3444 899999999999998 8999999999999999987653  44456


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE----eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM----QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      .|...|.+++|+| +++.+++++.|+.+++|++........    ...|...|.+++|+|++++|++++.|+.+++|+..
T Consensus        93 ~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_          93 RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence            7888999999999 899999999999999999876543222    23588899999999999999999999999999986


Q ss_pred             CCCccee------------------c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        153 SSSPVAQ------------------F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       153 ~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .......                  . .|.+.     +..++|+| ++++|++++.|+.|++||+.+++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGW-----VHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-----EEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cCccccccccccccccccceeeeeeccCccCc-----EEEEEeec-ccccccccccCCcceEEeeecccce
Confidence            5432111                  1 12222     34578888 6899999999999999999988775

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-33  Score=208.40  Aligned_cols=194  Identities=17%  Similarity=0.201  Sum_probs=170.3

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce--eeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP--IDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      +..+++++|++|+.||+|++||+.....  ...+ .|...+.+++|+|++ .++++++.|+.|++||+++++.......|
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            4567889999999999999999976543  3333 788999999999998 89999999999999999999988888899


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcce
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVA  158 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~  158 (224)
                      ...+.+++|++ ++..+++++.|+.+++||+++++.+. ...+...|.+++|+|++++|++++.|+.+++||+++++...
T Consensus       183 ~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  260 (337)
T d1gxra_         183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             ccccccccccc-cccccccccccccccccccccceeec-ccccccceEEEEEcccccccceecccccccccccccccccc
Confidence            99999999999 88999999999999999999886554 44588899999999999999999999999999999888776


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...|...+..     ++|+| ++++|++++.|+.|++||+.+++..
T Consensus       261 ~~~~~~~i~~-----v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         261 LHLHESCVLS-----LKFAY-CGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             ECCCSSCEEE-----EEECT-TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccccccccce-----EEECC-CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            6677776654     66777 7899999999999999999999876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-33  Score=204.25  Aligned_cols=196  Identities=14%  Similarity=0.178  Sum_probs=169.4

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCC-------------------------------
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQD-------------------------------   49 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-------------------------------   49 (224)
                      +.++.+++|++|+.||+|+|||+++++.+..+ +|...|.+++|+|++.                               
T Consensus        24 ~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (317)
T d1vyhc1          24 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN  103 (317)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccccc
Confidence            45677899999999999999999988877766 6777777777766532                               


Q ss_pred             ----------cEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee
Q psy11351         50 ----------AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY  119 (224)
Q Consensus        50 ----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  119 (224)
                                +.+++++.|+.+++||+++++....+..|...+.+++|+| ++.++++++.|+.+++|++++.+....+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~  182 (317)
T d1vyhc1         104 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR  182 (317)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEe
Confidence                      5677888999999999999998899999999999999999 89999999999999999999998888888


Q ss_pred             cCCCceeEEEEcCCC--------------------CeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeC
Q psy11351        120 GSCESCMSIRFNKAG--------------------TQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       120 ~~~~~v~~~~~~~~~--------------------~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  178 (224)
                      .+...+.++.|+|++                    .++++++.|+.|++||+++++++..+ .|...+.+     ++|+|
T Consensus       183 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~  257 (317)
T d1vyhc1         183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG-----VLFHS  257 (317)
T ss_dssp             CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE-----EEECS
T ss_pred             cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE-----EEECC
Confidence            899999999998764                    35788999999999999999998888 56666554     66677


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       ++++|++|+.||.|++||++++++.
T Consensus       258 -~~~~l~s~~~dg~i~iwd~~~~~~~  282 (317)
T d1vyhc1         258 -GGKFILSCADDKTLRVWDYKNKRCM  282 (317)
T ss_dssp             -SSSCEEEEETTTEEEEECCTTSCCC
T ss_pred             -CCCEEEEEECCCeEEEEECCCCcEE
Confidence             7999999999999999999998765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-33  Score=205.27  Aligned_cols=187  Identities=16%  Similarity=0.235  Sum_probs=169.8

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCe
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPF   82 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i   82 (224)
                      ...++.+++++.|+.+++||+++++....+ +|...+.+++|+|++ ++|++++.|+.|++|++++++....+..|...+
T Consensus       110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i  188 (317)
T d1vyhc1         110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVV  188 (317)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             cCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCCc
Confidence            456778999999999999999999888777 799999999999998 899999999999999999999999999999999


Q ss_pred             EEEEEcCCC-------------------CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC
Q psy11351         83 HAVMFNPVE-------------------ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR  143 (224)
Q Consensus        83 ~~~~~~~~~-------------------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  143 (224)
                      .+++|+|..                   +.++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  268 (317)
T d1vyhc1         189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD  268 (317)
T ss_dssp             EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC
Confidence            999998732                   2468899999999999999999888899999999999999999999999999


Q ss_pred             CCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        144 LPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      +.|++||+++++++..+ .|.+.+++     ++|+| ++++|++|+.||.|++||
T Consensus       269 g~i~iwd~~~~~~~~~~~~h~~~V~~-----~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         269 KTLRVWDYKNKRCMKTLNAHEHFVTS-----LDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TEEEEECCTTSCCCEEEECCSSCEEE-----EEECS-SSSCEEEEETTSEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCCEEE-----EEEcC-CCCEEEEEeCCCeEEEeC
Confidence            99999999999999988 57777655     56666 789999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-32  Score=201.70  Aligned_cols=192  Identities=14%  Similarity=0.204  Sum_probs=142.9

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec------------
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT------------   66 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~------------   66 (224)
                      +++++++++|++|+.||+|++||+++++.+..+  +|...|++++|+|++ .+ ++++.|+.+++|+.            
T Consensus        18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~-~~~~~d~~v~~~~~~~~~~~~~~~~~   95 (299)
T d1nr0a2          18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DL-FTVSWDDHLKVVPAGGSGVDSSKAVA   95 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CE-EEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-ee-ecccceeeEEEeccCCcccccccccc
Confidence            356778899999999999999999988877665  577788888888776 33 33444566666654            


Q ss_pred             ----------------------------------------------------------------------CCcccce-ee
Q psy11351         67 ----------------------------------------------------------------------RSREEAT-EL   75 (224)
Q Consensus        67 ----------------------------------------------------------------------~~~~~~~-~~   75 (224)
                                                                                            ++++... ..
T Consensus        96 ~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~  175 (299)
T d1nr0a2          96 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT  175 (299)
T ss_dssp             EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                  2222111 12


Q ss_pred             ccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE---eecCCCceeEEEEcCCCCeEeeeecCCCcEEEECC
Q psy11351         76 AVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM---QYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTR  152 (224)
Q Consensus        76 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~  152 (224)
                      ..|...|.+++|+| ++.++++++.|+.|++||+.++.....   +..|...|++++|+|++++|++++.|+.|++||++
T Consensus       176 ~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         176 IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECC
Confidence            35677899999999 889999999999999999987655433   34588999999999999999999999999999998


Q ss_pred             CCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        153 SSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ++...... ........  +..+.| + ++.+|++++.|+.|++||+.
T Consensus       255 ~~~~~~~~~~~~~~~~~--v~~~~~-~-~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         255 KPSDHPIIIKGAHAMSS--VNSVIW-L-NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CTTSCCEEETTSSTTSC--EEEEEE-E-ETTEEEEEETTSCEEEEECC
T ss_pred             CCCcceEEEecCCCCCc--EEEEEE-C-CCCEEEEEeCCCEEEEEecc
Confidence            87654443 21111111  222333 3 46789999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=200.54  Aligned_cols=197  Identities=11%  Similarity=0.082  Sum_probs=162.6

Q ss_pred             CCcceEEEEEeCCCcEEEEeCCCCceeeE--------E-eccCCeeEEEEcCCCCcEEEEec--CCCEEEEEecCCcccc
Q psy11351          4 GDPIKVLRVIGNDDHVISHDMASGDPIDF--------Y-LHERPVYGLSVDPSQDAIFASAC--DDGRVLLFDTRSREEA   72 (224)
Q Consensus         4 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~-~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~   72 (224)
                      ..++++|++|+.||+|+|||+..++....        + .|.++|.+++|++++ +++++++  .++.+++|+.++++.+
T Consensus        74 ~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~  152 (325)
T d1pgua1          74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSL  152 (325)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEE
T ss_pred             CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccccc
Confidence            45778999999999999999976543221        1 578899999999998 6766554  4678999999999999


Q ss_pred             eeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee---cCCCceeEEEEcCC-CCeEeeeecCCCcEE
Q psy11351         73 TELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY---GSCESCMSIRFNKA-GTQLLGLRRRLPPVL  148 (224)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~d~~v~v  148 (224)
                      ..+.+|...|.+++|+|.+..++++++.|+.+++||.+..+......   .|...|.+++|+|+ +.++++++.|+.|++
T Consensus       153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i  232 (325)
T d1pgua1         153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  232 (325)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceee
Confidence            99999999999999999555668889999999999998776555443   46788999999997 678999999999999


Q ss_pred             EECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        149 YNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       149 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ||+++++.+..+ .|...+..+.+. +.| | ++.+|++++.|+.|+|||+++++..
T Consensus       233 wd~~~~~~~~~l~~~~~~v~~~~~s-~~~-~-dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         233 FDGKSGEFLKYIEDDQEPVQGGIFA-LSW-L-DSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEE-EEE-S-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeccccccccccccccccccceee-eec-c-CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            999999998888 466666655443 233 3 6889999999999999999998765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-30  Score=197.70  Aligned_cols=195  Identities=19%  Similarity=0.289  Sum_probs=159.2

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      +.++++++|++|+.||+|++||...++.+... +|...|.++++++++ ..+++++.++.+++||.++.........+. 
T Consensus       128 ~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-  205 (388)
T d1erja_         128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIED-  205 (388)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSS-
T ss_pred             EECCCCCcceeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeecccccccccccccc-
Confidence            45667899999999999999999999888777 899999999999998 799999999999999999887766665544 


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-------cCCCceeEEEEcCCCCeEeeeecCCCcEEEECCC
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-------GSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      ...++.+.+.++.+|++++.|+.|++||.+++.....+.       .|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence            456666666588999999999999999999887655443       4788999999999999999999999999999987


Q ss_pred             CCcceec-------------ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        154 SSPVAQF-------------DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++.....             .|...     +..++|+| ++++|++|+.||.|++||++++++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         286 ANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             -------------CEEEEEECCSSC-----EEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             Cccccccccccccceeeecccccce-----EEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEE
Confidence            6544322             12333     34577777 6899999999999999999999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-30  Score=198.25  Aligned_cols=199  Identities=13%  Similarity=0.144  Sum_probs=159.0

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-------------------eccCCeeEEEEcCCCCcEEEEecCCCEE
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-------------------LHERPVYGLSVDPSQDAIFASACDDGRV   61 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i   61 (224)
                      |+++++|++||+|+ |++|+|||+.+++.+..+                   .|...|++++|+|++ ++|++|+.||.|
T Consensus        68 l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v  145 (388)
T d1erja_          68 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLI  145 (388)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCE
T ss_pred             EEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-Ccceeccccccc
Confidence            35677899999987 899999999988765443                   366779999999998 899999999999


Q ss_pred             EEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         62 LLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      ++||...++.+..+.+|...|.++++++ ++..+++++.++.+++||.++.........+...+....+.+++++|++++
T Consensus       146 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  224 (388)
T d1erja_         146 RIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS  224 (388)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEc
Confidence            9999999999999999999999999999 889999999999999999998876665555555544444455789999999


Q ss_pred             cCCCcEEEECCCCCcceecccCC---cccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        142 RRLPPVLYNTRSSSPVAQFDHEG---YYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       142 ~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .|+.|++||.+++.....+....   ....-.+..+.|+| ++++|++++.|+.|++||+.+++.
T Consensus       225 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC-----
T ss_pred             CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCcc
Confidence            99999999999988776652110   00111244577887 799999999999999999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-31  Score=201.38  Aligned_cols=190  Identities=11%  Similarity=0.104  Sum_probs=154.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc----ee
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA----TE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~   74 (224)
                      ++++++++|++|+.|++|+|||+.+++.....   +|...|++++|+|++ +.|++++.|+++++|++......    ..
T Consensus        58 ~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          58 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccc-ccceeecccCcceeeeeeccccccccccc
Confidence            45667889999999999999999887655433   788999999999998 89999999999999998766532    33


Q ss_pred             eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc------------------eeeEeecCCCceeEEEEcCCCCe
Q psy11351         75 LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK------------------EVLMQYGSCESCMSIRFNKAGTQ  136 (224)
Q Consensus        75 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~  136 (224)
                      ...|...|.+++|+| ++.+|++|+.|+.+++||.....                  .......|...|.+++|+|++++
T Consensus       137 ~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             ccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            457888999999999 89999999999999999986432                  23334468889999999999999


Q ss_pred             EeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCC
Q psy11351        137 LLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPR  200 (224)
Q Consensus       137 l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~  200 (224)
                      |++++.|+.|++||+++++.+..+ .|..++.+     ++|+| ++.+|++|+ |+.+++|....
T Consensus       216 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s-----~~fs~-d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         216 VAWVSHDSTVCLADADKKMAVATLASETLPLLA-----VTFIT-ESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEE-----EEEEE-TTEEEEEET-TSSCEEEEEET
T ss_pred             ccccccCCcceEEeeecccceeeeeccccccee-----eeecC-CCCEEEEEc-CCceEEEEeeC
Confidence            999999999999999999888887 46666555     55566 788888766 66666655443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=9.1e-31  Score=195.45  Aligned_cols=193  Identities=15%  Similarity=0.133  Sum_probs=156.9

Q ss_pred             CCCcceEEEEEeC--CCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee---c
Q psy11351          3 SGDPIKVLRVIGN--DDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL---A   76 (224)
Q Consensus         3 ~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~   76 (224)
                      .+..++++++++.  ++.+++|+.++++.+..+ +|...|++++|+|+++.++++++.|+.+++||.+..+....+   .
T Consensus       123 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred             ECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccccc
Confidence            4566777777654  678999999999988777 799999999999998667889999999999999877654443   4


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEc---CCCCeEeeeecCCCcEEEECCC
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFN---KAGTQLLGLRRRLPPVLYNTRS  153 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~v~v~d~~~  153 (224)
                      .|...|.+++|+|+.+.++++++.|+.|++||+++++....+..|...+..+.|+   |++++|++++.|+.|++||+++
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            6677899999999668999999999999999999998888888888777666665   7899999999999999999999


Q ss_pred             CCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        154 SSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      ++++..+. +...+... ...+.+.  .+.+|++++.||.|++||+
T Consensus       283 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQLGNQ-QVGVVAT--GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTCGGGC-EEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCcccCe-EEEEEEC--CCCEEEEEECCCEEEEEEC
Confidence            99888873 33333221 1123333  3457899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.4e-29  Score=188.68  Aligned_cols=171  Identities=16%  Similarity=0.282  Sum_probs=140.8

Q ss_pred             eeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEE
Q psy11351         29 PIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALY  107 (224)
Q Consensus        29 ~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~  107 (224)
                      ..+++ +|.+.|++++|+|++ ++|++|+.||+|+|||+.+++.+..+..|...|.+++|+| ++.++++++.|+.+.+|
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEE
T ss_pred             eeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecc
Confidence            44455 899999999999998 8999999999999999999999999999999999999999 77777777777776666


Q ss_pred             ecC-----------------------------------------------------------------------------
Q psy11351        108 DTR-----------------------------------------------------------------------------  110 (224)
Q Consensus       108 d~~-----------------------------------------------------------------------------  110 (224)
                      +..                                                                             
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            543                                                                             


Q ss_pred             ----------CCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCC
Q psy11351        111 ----------KPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQ  180 (224)
Q Consensus       111 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (224)
                                +++....+..|...|++++|+|++++|++++.|+.|++||++.......+.......  .+..++|+| +
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~-~  281 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSK-S  281 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS--CEEEEEECS-S
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC--ceEEEEECC-C
Confidence                      333333344578899999999999999999999999999999888777663222222  244577888 7


Q ss_pred             CeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        181 DEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       181 ~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++|++|+.||.|++||+.+++..
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~~~~  305 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCEEEEEECCCEEEEEECCCCcEE
Confidence            999999999999999999998876

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=192.26  Aligned_cols=190  Identities=14%  Similarity=0.181  Sum_probs=147.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-----------eccCCeeEEEEcCCCC----cEEEEecCCCEEEEEecCCccc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-----------LHERPVYGLSVDPSQD----AIFASACDDGRVLLFDTRSREE   71 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~~v~~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~   71 (224)
                      +.++++++.||+|++|++.........           .+...+..++|.++..    .++++++.||++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            457889999999999998654322111           2556788888877542    5889999999999999853210


Q ss_pred             ------------------ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee------cCCCceeE
Q psy11351         72 ------------------ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY------GSCESCMS  127 (224)
Q Consensus        72 ------------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------~~~~~v~~  127 (224)
                                        ......+...+.+++|+| ++ ++++|+.||.|++||+++++.+..+.      +|..+|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence                              111123445688999999 65 88999999999999999887655443      58899999


Q ss_pred             EEEcCCCCeEeeeecCCC---cEEEECCCCCcceecc--------------cCCcccceeeeEEEEeCCCCeEEEEcCCC
Q psy11351        128 IRFNKAGTQLLGLRRRLP---PVLYNTRSSSPVAQFD--------------HEGYYNSCTMKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       128 ~~~~~~~~~l~~~~~d~~---v~v~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  190 (224)
                      ++|+|+|++|++++.|++   |++||+++++.+..+.              |.+.|     ..++|+| ++++|++|+.|
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V-----~~l~fsp-d~~~l~S~s~D  310 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV-----MSLSFND-SGETLCSAGWD  310 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE-----EEEEECS-SSSEEEEEETT
T ss_pred             cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCce-----eeeccCC-CCCeeEEECCC
Confidence            999999999999999875   8999999987776652              44444     4477787 79999999999


Q ss_pred             CeEEEEeCCCCCeE
Q psy11351        191 FVLYMWRVPRDDIY  204 (224)
Q Consensus       191 ~~v~iw~~~~~~~~  204 (224)
                      ++|++||+.++++.
T Consensus       311 ~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         311 GKLRFWDVKTKERI  324 (393)
T ss_dssp             SEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEE
Confidence            99999999999776

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.7e-28  Score=182.21  Aligned_cols=188  Identities=11%  Similarity=0.128  Sum_probs=145.9

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC--cCe
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS--GPF   82 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~i   82 (224)
                      ++++|++|+.||+|+|||+.+++++..+ +|.++|++++|+|+  ++|++|+.|++|++|+....+.........  ...
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~   99 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC   99 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC--CEEEEEecccccccccccccccccccccccccccc
Confidence            4679999999999999999999998888 89999999999985  489999999999999998776544332222  233


Q ss_pred             EEEEEcCCCCCeEEEecCCCcEEEEecCC---------------------------------------------------
Q psy11351         83 HAVMFNPVEARLVATANSKDGIALYDTRK---------------------------------------------------  111 (224)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~---------------------------------------------------  111 (224)
                      ....+.+ ++.++++++.|+.|++||+++                                                   
T Consensus       100 ~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  178 (355)
T d1nexb2         100 LDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS  178 (355)
T ss_dssp             EEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             ccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeec
Confidence            3444555 556666666666666666543                                                   


Q ss_pred             ------------CceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCcccceeeeEEEEeC
Q psy11351        112 ------------PKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       112 ------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  178 (224)
                                  ++.......+...+.++.|+|+++++++++.|+.|++||++++..+..+ .|...+.++     .+  
T Consensus       179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~-----~~--  251 (355)
T d1nexb2         179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL-----RL--  251 (355)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE-----EE--
T ss_pred             ccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccc-----cc--
Confidence                        3333333345667788999999999999999999999999999988888 577776653     33  


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       ++++|++|+.||.|++||+++.+..
T Consensus       252 -~~~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         252 -SDKFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             -CSSEEEEECTTSEEEEEETTTCCEE
T ss_pred             -ccceeeeeeccccccccccccccee
Confidence             4678999999999999999987664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.2e-29  Score=189.27  Aligned_cols=159  Identities=14%  Similarity=0.188  Sum_probs=131.2

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCc------------ee---eEE----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEec
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGD------------PI---DFY----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDT   66 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~------------~~---~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~   66 (224)
                      .+.++++++.||++++|++....            ..   ...    .+...+++++|+|++  +|++|+.|++|++||+
T Consensus       135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~  212 (393)
T d1sq9a_         135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISEL  212 (393)
T ss_dssp             -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEET
T ss_pred             cccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEee
Confidence            35789999999999999975321            00   111    355678999999986  8899999999999999


Q ss_pred             CCccccee------eccCCcCeEEEEEcCCCCCeEEEecCCCc---EEEEecCCCceeeEee-------------cCCCc
Q psy11351         67 RSREEATE------LAVNSGPFHAVMFNPVEARLVATANSKDG---IALYDTRKPKEVLMQY-------------GSCES  124 (224)
Q Consensus        67 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~---v~i~d~~~~~~~~~~~-------------~~~~~  124 (224)
                      ++++++..      +.+|..+|.+++|+| ++++|++|+.|+.   |++||+++++....+.             +|...
T Consensus       213 ~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~  291 (393)
T d1sq9a_         213 STLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW  291 (393)
T ss_dssp             TTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred             cccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc
Confidence            98876543      457889999999999 9999999998874   8999999887665543             58899


Q ss_pred             eeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-ccCCccc
Q psy11351        125 CMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DHEGYYN  167 (224)
Q Consensus       125 v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~~~~~~  167 (224)
                      |++++|+|++++|++++.|++|++||+++++++.++ .|.+.+.
T Consensus       292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             eeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            999999999999999999999999999999999888 5766654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-27  Score=178.09  Aligned_cols=187  Identities=11%  Similarity=0.159  Sum_probs=146.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc------------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE------------   71 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------   71 (224)
                      ..|++|+||+.||+|+|||+++++++..+ +|...|.+++|+|   ++|++|+.|+.+++|+......            
T Consensus        25 ~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~  101 (342)
T d2ovrb2          25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR  101 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             ECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEe
Confidence            35789999999999999999999998887 8999999999986   4889999999888888653221            


Q ss_pred             --------------------------------------------------------------------ceeeccCCcCeE
Q psy11351         72 --------------------------------------------------------------------ATELAVNSGPFH   83 (224)
Q Consensus        72 --------------------------------------------------------------------~~~~~~~~~~i~   83 (224)
                                                                                          +..+.+|...+.
T Consensus       102 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  181 (342)
T d2ovrb2         102 CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY  181 (342)
T ss_dssp             EEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred             eeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccc
Confidence                                                                                011122333333


Q ss_pred             EEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec-cc
Q psy11351         84 AVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF-DH  162 (224)
Q Consensus        84 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~-~~  162 (224)
                      .+  .+ ++.++++++.||.|++||++..+.+..+..|...+.++++++  ++|++++.|+.|++||+...+....+ .+
T Consensus       182 ~~--~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  256 (342)
T d2ovrb2         182 SL--QF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGP  256 (342)
T ss_dssp             EE--EE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             cc--cC-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccccccccccc
Confidence            33  34 567899999999999999999988888888999998887765  79999999999999999988877766 33


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ..+...+  ..+.+   +++++++|+.||.|++||+++++..
T Consensus       257 ~~~~~~~--~~~~~---~~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         257 NKHQSAV--TCLQF---NKNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             TSCSSCE--EEEEE---CSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ceeeece--eeccc---CCCeeEEEcCCCEEEEEECCCCCEE
Confidence            3333321  12333   5789999999999999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=182.76  Aligned_cols=201  Identities=9%  Similarity=0.055  Sum_probs=147.7

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCce----eeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeecc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDP----IDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAV   77 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~   77 (224)
                      ++++.+++||+|+.||+|+|||++++..    ....+|..+|++++|+|+++.+|++|+.|+.|++|++...........
T Consensus        18 ~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~   97 (342)
T d1yfqa_          18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred             EEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc
Confidence            4567789999999999999999976543    233379999999999998767999999999999999988876665554


Q ss_pred             CCcC-eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee----c--CCCceeEEEEcCCCCeEeeeecCCCcEEEE
Q psy11351         78 NSGP-FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY----G--SCESCMSIRFNKAGTQLLGLRRRLPPVLYN  150 (224)
Q Consensus        78 ~~~~-i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~----~--~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d  150 (224)
                      +... .....+.+ +...+++++.++.+++||++.........    .  .........+.+.+..+++++.|+.|++||
T Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  176 (342)
T d1yfqa_          98 NEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR  176 (342)
T ss_dssp             CCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEE
T ss_pred             ccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEe
Confidence            4443 34445555 78899999999999999997543322222    1  223445667778888999999999999999


Q ss_pred             CCCCCcceec----c----------------------cCCcc-------------------------------cceeeeE
Q psy11351        151 TRSSSPVAQF----D----------------------HEGYY-------------------------------NSCTMKS  173 (224)
Q Consensus       151 ~~~~~~~~~~----~----------------------~~~~~-------------------------------~~~~~~~  173 (224)
                      ++..+.....    .                      ..+.+                               ....+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (342)
T d1yfqa_         177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS  256 (342)
T ss_dssp             SSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred             cccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence            8654322111    0                      00000                               0011345


Q ss_pred             EEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        174 CCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       174 ~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++|+| ++++|++|+.||.|++||+++++..
T Consensus       257 l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         257 IEFSP-RHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEECT-TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             EEecC-CccEEEEECCCCEEEEEECCCCcEE
Confidence            78999 6899999999999999999998775

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=9.4e-28  Score=176.48  Aligned_cols=170  Identities=14%  Similarity=0.179  Sum_probs=124.8

Q ss_pred             CceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-ccCCcCeEEEEEcCC--------------
Q psy11351         27 GDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-AVNSGPFHAVMFNPV--------------   90 (224)
Q Consensus        27 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~--------------   90 (224)
                      |+..+.+ ||..+|++++|+|++ ++|++|+.||+|++||+++++....+ ..|...|.+++|+|+              
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEE
Confidence            3445555 999999999999998 89999999999999999887755544 245555555555551              


Q ss_pred             ------------------------------------------------------------------CCCeEEEecCCCcE
Q psy11351         91 ------------------------------------------------------------------EARLVATANSKDGI  104 (224)
Q Consensus        91 ------------------------------------------------------------------~~~~l~~~~~dg~v  104 (224)
                                                                                        +++++++|+.||.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                              33344444445555


Q ss_pred             EEEecCCCceee-EeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec----ccCCcccceeeeEEEEeCC
Q psy11351        105 ALYDTRKPKEVL-MQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF----DHEGYYNSCTMKSCCFAGT  179 (224)
Q Consensus       105 ~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  179 (224)
                      ++||+++.+... ....|...|++++|+|++++|++++.|+.|++||+.++......    .|...+.     .++|+| 
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~~s~-  234 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA-----CVSWSP-  234 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE-----EEEECT-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccc-
Confidence            555544433221 22347888999999999999999999999999999877655443    2444443     467777 


Q ss_pred             CCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ++.+|++|+.|+.|++||+++++.
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccceEEEcCCCEEEEEECCCCCc
Confidence            799999999999999999988754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-27  Score=170.00  Aligned_cols=181  Identities=15%  Similarity=0.201  Sum_probs=145.9

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce----------
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT----------   73 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------   73 (224)
                      .++++|++|+.||+|+|||+++++++..+ +|.+.|++++|+  + ++|++|+.|+.|++|+++.+....          
T Consensus        23 ~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~   99 (293)
T d1p22a2          23 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL   99 (293)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred             EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccc
Confidence            35789999999999999999999999888 899999999884  4 799999999999999987653211          


Q ss_pred             ---------------------------------eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec
Q psy11351         74 ---------------------------------ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG  120 (224)
Q Consensus        74 ---------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  120 (224)
                                                       .+..|...+..+.+.+   ..+++++.|+.+++||+++.+....+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~  176 (293)
T d1p22a2         100 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNG  176 (293)
T ss_dssp             EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcc
Confidence                                             1123445566666544   5778888999999999999988888888


Q ss_pred             CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        121 SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       121 ~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      +...+..+.++  +.++++++.|+.|++||+++.+.+..+. +...+.       .+++ ++.+|++|+.||.|++||+.
T Consensus       177 ~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-------~~~~-~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         177 HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-------CIRF-DNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-------EEEC-CSSEEEEEETTSCEEEEEHH
T ss_pred             cccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee-------eccc-cceEEEEEcCCCEEEEEECC
Confidence            88888887775  5789999999999999999988887773 333332       2333 68899999999999999986


Q ss_pred             CC
Q psy11351        200 RD  201 (224)
Q Consensus       200 ~~  201 (224)
                      ..
T Consensus       247 ~~  248 (293)
T d1p22a2         247 AA  248 (293)
T ss_dssp             HH
T ss_pred             CC
Confidence            53

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-26  Score=171.84  Aligned_cols=185  Identities=11%  Similarity=0.085  Sum_probs=150.5

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEE
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAV   85 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~   85 (224)
                      ...+++++.|+.|++||....+.+..+ +|...+..+.+  ++ ..+++++.||.|++||++.++.+..+..|...+.++
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  223 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM  223 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CC-CEEEEEeCCCeEEEeecccceeeeEecccccceeEE
Confidence            456889999999999999988887776 78777776665  45 789999999999999999999999999999999998


Q ss_pred             EEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec---CCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc-
Q psy11351         86 MFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG---SCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD-  161 (224)
Q Consensus        86 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~-  161 (224)
                      .+++   +++++++.|+.|++||+...+....+..   |...+.++.++  ++++++++.||.|++||+++++.+..+. 
T Consensus       224 ~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         224 ELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             EEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred             ecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEec
Confidence            8866   5999999999999999998877666654   45566666665  5799999999999999999999887762 


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCC----eEEEEeCCC
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDF----VLYMWRVPR  200 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----~v~iw~~~~  200 (224)
                      ....-....+..++|+| ++.++++|+.||    .|++||++.
T Consensus       299 ~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         299 LESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            11111222345578888 689999999888    499999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.6e-27  Score=173.71  Aligned_cols=178  Identities=16%  Similarity=0.128  Sum_probs=146.3

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHA   84 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~   84 (224)
                      .+++++++..|+.|++||+.+++.+... ++...+.++.|+|++ +.+++++.|+.|++||++++..+..+++|...|.+
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~  248 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGL  248 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccccccccccc-eeeecccccceEEeeeccccccccccccccccccc
Confidence            4578999999999999999999888777 788899999999998 89999999999999999999999999999999999


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEE-EEcCCCCeEeeeecCCCcEEEECCCCCcceec--c
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSI-RFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF--D  161 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~--~  161 (224)
                      +++++   +++++++.||.|++||+++.....  ..|...+.++ .+++++.+++++ .|+.|++||+++++++...  .
T Consensus       249 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~  322 (355)
T d1nexb2         249 LRLSD---KFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILK  322 (355)
T ss_dssp             EEECS---SEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTT
T ss_pred             ccccc---ceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecC
Confidence            99965   689999999999999999875433  3344555554 456677666655 5889999999999988643  4


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEe
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWR  197 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~  197 (224)
                      |.+.+.+     ++|+| + .++++++.||+++||.
T Consensus       323 ~~~~V~~-----v~~~~-~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         323 DADQIWS-----VNFKG-K-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TCSEEEE-----EEEET-T-EEEEEEESSSCEEEEE
T ss_pred             CCCCEEE-----EEEcC-C-eEEEEEECCCcEEEEE
Confidence            6666554     66665 3 6788899999876654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-24  Score=158.90  Aligned_cols=170  Identities=16%  Similarity=0.171  Sum_probs=125.0

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC-CEEEEEecCCcccceee-ccCCcCeEEEEEcCCCCCeE
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD-GRVLLFDTRSREEATEL-AVNSGPFHAVMFNPVEARLV   95 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l   95 (224)
                      .+.+|+..+++.+..+.+...+.  ++++++ +.+++++.+ +.+++|++...+....+ ..|...+.+++|+| ++.+|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l  177 (287)
T d1pgua2         102 DLLILQSFTGDIIKSVRLNSPGS--AVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYI  177 (287)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEE--EEEECS-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEE
T ss_pred             cceeeeccceeeeeeccccceee--eeeccC-cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-Ccccc
Confidence            34444444444444444444444  455566 455555554 58999999876654444 35778899999999 89999


Q ss_pred             EEecCCCcEEEEecCCCceeeE-eecCCCceeEEEEcCC----------CCeEeeeecCCCcEEEECCCC-Ccceec-cc
Q psy11351         96 ATANSKDGIALYDTRKPKEVLM-QYGSCESCMSIRFNKA----------GTQLLGLRRRLPPVLYNTRSS-SPVAQF-DH  162 (224)
Q Consensus        96 ~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~v~v~d~~~~-~~~~~~-~~  162 (224)
                      ++|+.||.|++||+.+++.... +..|...|.+++|+|.          +.++++++.|++|++||++++ +.+..+ .|
T Consensus       178 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h  257 (287)
T d1pgua2         178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH  257 (287)
T ss_dssp             EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred             ccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC
Confidence            9999999999999998865543 4568999999999875          468999999999999999774 444444 57


Q ss_pred             CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        163 EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      .+.+.+     ++|+| ++ .|++++.|+.|++|++
T Consensus       258 ~~~V~~-----v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         258 KDGVNN-----LLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCEEE-----EEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEE-----EEECC-CC-EEEEEECCCeEEEEEE
Confidence            777666     44555 55 5888999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=9.9e-26  Score=169.07  Aligned_cols=189  Identities=8%  Similarity=-0.004  Sum_probs=155.6

Q ss_pred             CC-cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCC--CEEEEEecCCcccceeeccCCc
Q psy11351          4 GD-PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDD--GRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         4 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      ++ +|+++|+++ +|.|++||+++++.+. +.|...|.+++|+|+| +.|++++.+  ..|++||.++++ ...+..|..
T Consensus        11 SP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~   86 (360)
T d1k32a3          11 SPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGK-AEKFEENLG   86 (360)
T ss_dssp             EECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCC-EEECCCCCC
T ss_pred             cCCCCCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCc-EEEeeCCCc
Confidence            44 688999887 5799999998877665 4799999999999999 677665544  379999998776 456678899


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee----------cCCCcEEEE
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR----------RRLPPVLYN  150 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~v~d  150 (224)
                      .+.+++|+| +++++++++.++.+.+|++.+++....+..+...+.+++|+|+|++|+.+.          .++.+++||
T Consensus        87 ~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          87 NVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             SEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             eEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            999999999 999999999999999999999988777888889999999999999998643          344588999


Q ss_pred             CCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        151 TRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      +.+++......+.....     .+.|+| ++++|++++.++.+.+|+......
T Consensus       166 ~~~~~~~~~~~~~~~~~-----~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         166 MEGRKIFAATTENSHDY-----APAFDA-DSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             TTTTEEEECSCSSSBEE-----EEEECT-TSCEEEEEESCCCCCEECSSSSCE
T ss_pred             cccCceeeecccccccc-----cccccC-CCCEEEEEeCCCceEcccccccce
Confidence            99887665555544433     366777 799999999999999999876654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=3.6e-24  Score=160.48  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=127.3

Q ss_pred             CCCCcceEEEEEeCCC--cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVIGNDD--HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      +.+++|++|++++.+.  .|++||.++++......|...+.+++|+|++ ++|++++.++.+++|++.+++....+..|.
T Consensus        49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (360)
T d1k32a3          49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSRE  127 (360)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             EECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccc-cccceeccccccccccccccceeeeeeccc
Confidence            4567888888776553  7999999999988877999999999999999 899999999999999999999888888899


Q ss_pred             cCeEEEEEcCCCCCeEEEe----------cCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         80 GPFHAVMFNPVEARLVATA----------NSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~----------~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      ..+.+++|+| ++++|+.+          ..++.+++||+.+++ ......+...+..+.|+|+|++|++++.++.+.+|
T Consensus       128 ~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         128 AMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             ccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCc-eeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence            9999999999 88888754          345569999999774 44555677888999999999999999999999998


Q ss_pred             ECC
Q psy11351        150 NTR  152 (224)
Q Consensus       150 d~~  152 (224)
                      +..
T Consensus       206 d~~  208 (360)
T d1k32a3         206 DRV  208 (360)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.8e-24  Score=165.61  Aligned_cols=102  Identities=14%  Similarity=0.038  Sum_probs=81.1

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee--e---ccCCcCe
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE--L---AVNSGPF   82 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~---~~~~~~i   82 (224)
                      -++++.+.||+|+|||+.+++.+..+.+...+..++|+||| +++++++.|+++++||+.+++....  +   .+|...+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            35688889999999999999999998655679999999999 8999999999999999998874332  2   3455566


Q ss_pred             EEEEEcCCCCCeE-EEecCCCcEEEEecCC
Q psy11351         83 HAVMFNPVEARLV-ATANSKDGIALYDTRK  111 (224)
Q Consensus        83 ~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~  111 (224)
                      .+++|+| +++++ +++..++.+.+||..+
T Consensus       112 ~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2         112 SSKFKGY-EDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             ECCSTTC-TTTEEEEEEEESSEEEEEETTT
T ss_pred             EeeeecC-CCCEEEEeecCCCeEEEEcCCc
Confidence            7777888 66655 4455778888887664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.8e-23  Score=150.04  Aligned_cols=176  Identities=18%  Similarity=0.216  Sum_probs=139.4

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCcee-------------------------------------------eEE-eccCCeeE
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPI-------------------------------------------DFY-LHERPVYG   41 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------------~~~-~~~~~v~~   41 (224)
                      ++++|++|+.|++|++|++..+...                                           ... .|...+..
T Consensus        64 ~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  143 (293)
T d1p22a2          64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  143 (293)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccc
Confidence            4678999999999999987664210                                           011 35666777


Q ss_pred             EEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC
Q psy11351         42 LSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS  121 (224)
Q Consensus        42 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  121 (224)
                      +.+.+   ..+++++.|+.+++||.++++.+..+.++...+..+.+++   ..+++++.||.|++||+++.+.+.....+
T Consensus       144 ~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  217 (293)
T d1p22a2         144 VDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH  217 (293)
T ss_dssp             EEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeeccc
Confidence            66654   5678889999999999999999999999998998888765   68999999999999999999888888778


Q ss_pred             CCceeEEEEcCCCCeEeeeecCCCcEEEECCCC---------Ccceec-ccCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        122 CESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSS---------SPVAQF-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       122 ~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                      ...+..  +++++.+|++++.|+.|++||+.+.         .++..+ .|.+.+.++     +|   ++.+|++++.||
T Consensus       218 ~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v-----~~---d~~~l~s~s~Dg  287 (293)
T d1p22a2         218 EELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL-----QF---DEFQIVSSSHDD  287 (293)
T ss_dssp             SSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE-----EE---CSSCEEECCSSS
T ss_pred             ceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE-----EE---cCCEEEEEecCC
Confidence            777765  5567899999999999999997542         233444 577777664     34   567899999999


Q ss_pred             eEEEEe
Q psy11351        192 VLYMWR  197 (224)
Q Consensus       192 ~v~iw~  197 (224)
                      .|++||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.2e-24  Score=155.95  Aligned_cols=144  Identities=18%  Similarity=0.233  Sum_probs=119.1

Q ss_pred             cceEEEEEeCC-CcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce-eeccCCcC
Q psy11351          6 PIKVLRVIGND-DHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT-ELAVNSGP   81 (224)
Q Consensus         6 ~~~~l~~~~~d-g~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~   81 (224)
                      .++.+++++.| +.+++|++...+.....  .|...+++++|+|++ .+|++|+.||.|++||+.+++... .+..|...
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~  207 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK  207 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEECCSCCCSSC
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc-cccccccccccccceeecccccccccccccccc
Confidence            34566666666 47999999866555444  578899999999998 899999999999999999887543 46789999


Q ss_pred             eEEEEEcCC---------CCCeEEEecCCCcEEEEecCCCce-eeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         82 FHAVMFNPV---------EARLVATANSKDGIALYDTRKPKE-VLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        82 i~~~~~~~~---------~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      |.+++|+|.         ++.++++|+.|+.|++||++++.. ...+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       208 v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999873         356899999999999999987544 44445799999999999986 5888999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.7e-24  Score=157.05  Aligned_cols=168  Identities=8%  Similarity=0.042  Sum_probs=128.0

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee---eccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecC
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE---LAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTR  110 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~  110 (224)
                      +|+..|++++|+|++ ++|++|+.||+|+|||++++.....   ..+|..+|.+++|+|.++.++++|+.||.|++|++.
T Consensus         9 ~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_           9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            799999999999998 8999999999999999987654332   346899999999998567799999999999999999


Q ss_pred             CCceeeEeecCCC-ceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEc
Q psy11351        111 KPKEVLMQYGSCE-SCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSG  187 (224)
Q Consensus       111 ~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~  187 (224)
                      ..........+.. ......+.++...+++++.++.+++||++++......  ...............+.+ .+..++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  166 (342)
T d1yfqa_          88 GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVG  166 (342)
T ss_dssp             SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeee
Confidence            8766666554443 3445566778889999999999999998765444333  111111111122233444 67889999


Q ss_pred             CCCCeEEEEeCCCCCe
Q psy11351        188 SDDFVLYMWRVPRDDI  203 (224)
Q Consensus       188 ~~d~~v~iw~~~~~~~  203 (224)
                      +.|+.|++|++...+.
T Consensus       167 ~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCED  182 (342)
T ss_dssp             ESTTEEEEEESSCCTT
T ss_pred             cCCCcEEEEecccCcc
Confidence            9999999999987765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.9e-22  Score=149.56  Aligned_cols=132  Identities=13%  Similarity=0.171  Sum_probs=98.9

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC-----
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS-----   79 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----   79 (224)
                      +++++++.|++|++||+++++.+..+   .+...+.+++|+|+|..++++++.++.|.+||+.+++.+..+..+.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999998877   2456688999999993344678889999999999999877775543     


Q ss_pred             cCeEEEEEcCCCCCeEEEec------------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee
Q psy11351         80 GPFHAVMFNPVEARLVATAN------------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~------------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      ..+..++|+| +++.++++.            .+..+.+||..+.+....+. ....+..++|+|+|+++++++
T Consensus        82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEES
T ss_pred             cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEc
Confidence            2455789999 777777664            35667888887765544433 334456667777776666554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.7e-21  Score=144.89  Aligned_cols=196  Identities=10%  Similarity=0.038  Sum_probs=137.6

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVN   78 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~   78 (224)
                      .|.+..++++++++.|++|.+||+++++.+..+  .+...+.+++|+|+|..+++++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            467888999999999999999999999998876  456678999999999445577888999999999998766554321


Q ss_pred             C------cCeEEEEEcCCCCCeEEEec------------CCCcEEEE---------------------------------
Q psy11351         79 S------GPFHAVMFNPVEARLVATAN------------SKDGIALY---------------------------------  107 (224)
Q Consensus        79 ~------~~i~~~~~~~~~~~~l~~~~------------~dg~v~i~---------------------------------  107 (224)
                      .      ..+..++|+| +++++++++            .++.+.+|                                 
T Consensus        82 ~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            1      1344667777 555554432            23333333                                 


Q ss_pred             --------ecCCCceeeEe-------------------------------------------------------------
Q psy11351        108 --------DTRKPKEVLMQ-------------------------------------------------------------  118 (224)
Q Consensus       108 --------d~~~~~~~~~~-------------------------------------------------------------  118 (224)
                              |+.+++....+                                                             
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence                    33222111110                                                             


Q ss_pred             -------ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCC
Q psy11351        119 -------YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDF  191 (224)
Q Consensus       119 -------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  191 (224)
                             ..+...+..+.+++++.+++.... +.+.+||+.+++.+..+.+...+.+     ++|+| |+++|++++.|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~-----va~s~-DG~~l~v~~~d~  313 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYC-----VAFDK-KGDKLYLGGTFN  313 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCE-----EEECS-SSSCEEEESBSS
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEE-----EEEcC-CCCEEEEEeCCC
Confidence                   012233455666666666665544 4699999999988877765555554     66677 799999999999


Q ss_pred             eEEEEeCCCCCeE
Q psy11351        192 VLYMWRVPRDDIY  204 (224)
Q Consensus       192 ~v~iw~~~~~~~~  204 (224)
                      .|++||..+++..
T Consensus       314 ~v~v~D~~t~~~i  326 (346)
T d1jmxb_         314 DLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             cEEEEECccCCEE
Confidence            9999999999876

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=7.7e-21  Score=138.85  Aligned_cols=197  Identities=13%  Similarity=0.069  Sum_probs=148.9

Q ss_pred             CCCCCcceEE-EEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          1 MASGDPIKVL-RVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         1 ~a~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ++++++|+++ ++++.+++|++||+.+++.+..+.....+..+.|++++...++++..++.+.+|+..+++....+..+ 
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  115 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-  115 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeecccc-
Confidence            3567788876 56778999999999999998888655678999999999667778888999999999998877777654 


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee----------------------------------------
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY----------------------------------------  119 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~----------------------------------------  119 (224)
                      ....++.|+|++..+++++..++.+.+|+..+.+....+.                                        
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            4578899999444455667778889999987754332211                                        


Q ss_pred             -cCCCceeEEEEcCCCCeEeeeec---CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEE-EEcCCCCeEE
Q psy11351        120 -GSCESCMSIRFNKAGTQLLGLRR---RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYV-VSGSDDFVLY  194 (224)
Q Consensus       120 -~~~~~v~~~~~~~~~~~l~~~~~---d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~  194 (224)
                       .....+..++|+++++.++++..   ++.|++||+.+++.+..+.....+.     .++|+| ++++| ++++.|+.|+
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-----~va~sp-dg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA-----GIAVTP-DGKKVYVALSFCNTVS  269 (301)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEE-----EEEECT-TSSEEEEEETTTTEEE
T ss_pred             ccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEE-----EEEEeC-CCCEEEEEECCCCeEE
Confidence             02233456788888887766543   3569999999998887775444433     367787 67764 7888899999


Q ss_pred             EEeCCCCCeE
Q psy11351        195 MWRVPRDDIY  204 (224)
Q Consensus       195 iw~~~~~~~~  204 (224)
                      +||+.+++..
T Consensus       270 v~D~~t~~~~  279 (301)
T d1l0qa2         270 VIDTATNTIT  279 (301)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999999775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4.2e-21  Score=147.94  Aligned_cols=188  Identities=11%  Similarity=0.066  Sum_probs=143.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc--eee---ccCCcCeE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA--TEL---AVNSGPFH   83 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~---~~~~~~i~   83 (224)
                      ++++.+.||+|.|||..+++++..+.....+..++|+|+| +++++++.|+++++||+.+++..  ..+   ..|.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            4689999999999999999999998555679999999999 89999999999999999887643  222   34556667


Q ss_pred             EEEEcCCCCCe-EEEecCCCcEEEEecCCCceeeEeec-----------CCCceeEEEEcCCCCeEee-eecCCCcEEEE
Q psy11351         84 AVMFNPVEARL-VATANSKDGIALYDTRKPKEVLMQYG-----------SCESCMSIRFNKAGTQLLG-LRRRLPPVLYN  150 (224)
Q Consensus        84 ~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~-~~~d~~v~v~d  150 (224)
                      +..|+| ++++ +++++.++.+++||..+++....+..           +......+.++|+|..++. ...++.+.+||
T Consensus       113 s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            778888 6665 57888899999999999877665542           3455677899999987654 55678899999


Q ss_pred             CCCCCcceec--ccCCcccceeeeEEEEeCCCCeEEEEc-CCCCeEEEEeCCCCCeE
Q psy11351        151 TRSSSPVAQF--DHEGYYNSCTMKSCCFAGTQDEYVVSG-SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       151 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~v~iw~~~~~~~~  204 (224)
                      ..+.+.....  .......     .+.|+| ++++++++ ..+..+.++|..+++..
T Consensus       192 ~~~~~~~~~~~i~~g~~~~-----~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLH-----DGGLDG-SHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEE-----EEEECT-TSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ccCCCcceEEEEcccCccc-----cceECC-CCCEEEEeccccceEEEeecccceEE
Confidence            9887654433  3333333     367777 67765554 45668999999887664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=3.8e-19  Score=129.73  Aligned_cols=187  Identities=11%  Similarity=0.124  Sum_probs=144.3

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcC
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNP   89 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~   89 (224)
                      +++++.|++|.+||+++++.+..+.....+..++|+|+|..++++++.++.|++||+.+++.+..+..+.. ...+.|++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc
Confidence            44677899999999999999998877778899999999943456788899999999999998888877654 68999999


Q ss_pred             CCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee-ecCCCcEEEECCCCCcceecccCCcccc
Q psy11351         90 VEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL-RRRLPPVLYNTRSSSPVAQFDHEGYYNS  168 (224)
Q Consensus        90 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~  168 (224)
                      ++...++++..++.+.+|+..+++....+. +.....++.|+|+++.++.. ..++.+.+|+..+.+....+....... 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK-  161 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE-
T ss_pred             ccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce-
Confidence            444566677788899999999886655554 44567889999999987654 457779999999988887775444333 


Q ss_pred             eeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        169 CTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       169 ~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                          .+.++|+...++++...++.+.+|+....+.
T Consensus       162 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (301)
T d1l0qa2         162 ----GIAVTPDGTKVYVANFDSMSISVIDTVTNSV  192 (301)
T ss_dssp             ----EEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ----EEEeeccccceeeecccccccccccccceee
Confidence                3567774334445555567888888777655

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.7e-18  Score=133.26  Aligned_cols=201  Identities=12%  Similarity=0.021  Sum_probs=140.1

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceee--EE----eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPID--FY----LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      ++++++|+++++++.|++|++||+.+++...  .+    +|.+.+.+..|+|||..++++++.+++|++||..+++++..
T Consensus        67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2          67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            3678899999999999999999998876432  22    46667777788899944568899999999999999887765


Q ss_pred             ecc-----------CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEe-ecCCCceeEEEEcCCCCeEeeeec
Q psy11351         75 LAV-----------NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQ-YGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus        75 ~~~-----------~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                      +..           +......+.++|++..++++...++.+.+||..+.+..... ..+...+..++|+|+|+++++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             eccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            543           33456788999944455677788899999999887654332 346677899999999998877765


Q ss_pred             -CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCCC
Q psy11351        143 -RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPRD  201 (224)
Q Consensus       143 -d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~~  201 (224)
                       ++.+.++|..+++....+.................+..+....+.. .++.+.+|+....
T Consensus       227 ~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         227 ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence             4568899998887776653222111111111222232334444333 3677888876554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.2e-16  Score=116.44  Aligned_cols=192  Identities=9%  Similarity=0.111  Sum_probs=131.7

Q ss_pred             eEEEEEeCCCcEEEEeCCCCce---eeEEeccCCeeEEEEcCCCCcEE-EEecCCCEEEEEecCCcccceee---ccCCc
Q psy11351          8 KVLRVIGNDDHVISHDMASGDP---IDFYLHERPVYGLSVDPSQDAIF-ASACDDGRVLLFDTRSREEATEL---AVNSG   80 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~---~~~~~   80 (224)
                      ..+++++.|++|++|+++....   +..+.|.+.+..++|+|+| ++| +++..|+.|.+|++........+   ..+..
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG-~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            3567888999999999976533   3445899999999999999 555 66667999999999876543332   22344


Q ss_pred             CeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCceeeE--eecCCCceeEEEEcCCCCeEeeeec-CCCcEEEECCCCCc
Q psy11351         81 PFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKEVLM--QYGSCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRSSSP  156 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~~~~  156 (224)
                      .+..++|+| +++++++++ .++.+.+|+.........  ...+...+.++.++|++++++.++. +..+.+|+......
T Consensus        84 ~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          84 SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            567899999 788777776 467899998876644333  3356777889999999998888764 45688999876544


Q ss_pred             ceecc--cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        157 VAQFD--HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       157 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .....  ............+.|++.....+.+....+...+|+....
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~  209 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP  209 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence            43221  1111111122346777744444556666778888876544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=1.4e-15  Score=114.11  Aligned_cols=194  Identities=12%  Similarity=-0.006  Sum_probs=128.3

Q ss_pred             CCCCcceEEEEE-----eCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEec----------CCCEEEEEe
Q psy11351          2 ASGDPIKVLRVI-----GNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASAC----------DDGRVLLFD   65 (224)
Q Consensus         2 a~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd   65 (224)
                      |++.+++.++..     +.++.|.+||..+++.+..+ .+.  ...++|+|+| ++|++++          .++.|.+||
T Consensus        27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D  103 (373)
T d2madh_          27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--CccEEEcCCC-CEEEEEeecCCcccccccceEEEEEE
Confidence            566778877654     23467999999999988877 333  3379999999 6777653          468899999


Q ss_pred             cCCcccceeeccC-----------------------------------------------CcCeEEEEEcCCCCCeEEEe
Q psy11351         66 TRSREEATELAVN-----------------------------------------------SGPFHAVMFNPVEARLVATA   98 (224)
Q Consensus        66 ~~~~~~~~~~~~~-----------------------------------------------~~~i~~~~~~~~~~~~l~~~   98 (224)
                      ..+++.+..+..+                                               .....++.++|++...+++.
T Consensus       104 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~  183 (373)
T d2madh_         104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLL  183 (373)
T ss_pred             CCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEE
Confidence            9887643322111                                               11234566777445566788


Q ss_pred             cCCCcEEEEecCCCceeeEeec--------------------------C-------------------------------
Q psy11351         99 NSKDGIALYDTRKPKEVLMQYG--------------------------S-------------------------------  121 (224)
Q Consensus        99 ~~dg~v~i~d~~~~~~~~~~~~--------------------------~-------------------------------  121 (224)
                      +.|+.+.+||....+.......                          .                               
T Consensus       184 ~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (373)
T d2madh_         184 CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT  263 (373)
T ss_pred             cCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeee
Confidence            8999999999765432221100                          0                               


Q ss_pred             --CCceeEEEEcCCCCeEe----------eeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCe--EEEEc
Q psy11351        122 --CESCMSIRFNKAGTQLL----------GLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDE--YVVSG  187 (224)
Q Consensus       122 --~~~v~~~~~~~~~~~l~----------~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~  187 (224)
                        ......+++++++..++          ....++.+.+||+.+++.+..+.+...+..     ++|+| |++  +++++
T Consensus       264 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~-----~a~sp-DG~~~l~vt~  337 (373)
T d2madh_         264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDA-----ISVAQ-DGGPDLYALS  337 (373)
T ss_pred             eccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeE-----EEECC-CCCEEEEEEe
Confidence              00112244555554443          334456788999988888887765555444     66777 666  45788


Q ss_pred             CCCCeEEEEeCCCCCeE
Q psy11351        188 SDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       188 ~~d~~v~iw~~~~~~~~  204 (224)
                      +.|+.|++||+.++++.
T Consensus       338 ~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         338 AGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCCeEEEEECCCCCEE
Confidence            99999999999999886

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=1.4e-16  Score=122.13  Aligned_cols=158  Identities=10%  Similarity=0.023  Sum_probs=109.4

Q ss_pred             EEcCCCC-cEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeE--ee
Q psy11351         43 SVDPSQD-AIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLM--QY  119 (224)
Q Consensus        43 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~  119 (224)
                      .+..+.. .++++.+.||+|++||+.+++.+..+..+. .+..++|+| +++++++++.|+.+++||+.+++....  +.
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            3444432 356888999999999999999999998765 589999999 999999999999999999988764332  22


Q ss_pred             ---cCCCceeEEEEcCCCCeEeee-ecCCCcEEEECCCCCcceec-ccCCcccceee------eEEEEeCCCCeEEEEcC
Q psy11351        120 ---GSCESCMSIRFNKAGTQLLGL-RRRLPPVLYNTRSSSPVAQF-DHEGYYNSCTM------KSCCFAGTQDEYVVSGS  188 (224)
Q Consensus       120 ---~~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~s~~  188 (224)
                         .|...+.+++|+|||++++++ ..++.+++||..++++.... .+...+....+      ..+.++++....+.+..
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence               345556677888999987655 47899999999998887766 33333322222      12344443223333444


Q ss_pred             CCCeEEEEeCCCCC
Q psy11351        189 DDFVLYMWRVPRDD  202 (224)
Q Consensus       189 ~d~~v~iw~~~~~~  202 (224)
                      ..+.+.+++.....
T Consensus       183 ~~~~i~~~~~~~~~  196 (426)
T d1hzua2         183 ETGKVLLVNYKDID  196 (426)
T ss_dssp             TTTEEEEEECSSSS
T ss_pred             CCCeEEEEEecccc
Confidence            44555555555443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.2e-15  Score=113.65  Aligned_cols=111  Identities=12%  Similarity=0.058  Sum_probs=77.6

Q ss_pred             CCCCcceEEEEEe-----CCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEe----------cCCCEEEEEec
Q psy11351          2 ASGDPIKVLRVIG-----NDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASA----------CDDGRVLLFDT   66 (224)
Q Consensus         2 a~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~iwd~   66 (224)
                      |+..+++.++...     .+.+|.+||..+++.+..+. .+....++|+|+| ++|+++          ..|+.|++||.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~~~a~SpDg-~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSCEEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCCceEEcCCC-CEEEEEeCCCccccccCCCCEEEEEEC
Confidence            4566777776553     45679999999999888772 2233479999999 555543          45789999999


Q ss_pred             CCcccceeeccCCc-------CeEEEEEcCCCCCeEEEe--cCCCcEEEEecCCCcee
Q psy11351         67 RSREEATELAVNSG-------PFHAVMFNPVEARLVATA--NSKDGIALYDTRKPKEV  115 (224)
Q Consensus        67 ~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~  115 (224)
                      .+++.+..+..+..       ....++|+| +++.++.+  +.+..+.+||..+++..
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEe
Confidence            99987766543322       234578999 77766655  34567888888776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=4.3e-16  Score=114.81  Aligned_cols=146  Identities=14%  Similarity=0.133  Sum_probs=114.7

Q ss_pred             cEEEEecCCCEEEEEecCCcccceeeccC--CcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCceeeEeecCC----
Q psy11351         50 AIFASACDDGRVLLFDTRSREEATELAVN--SGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKEVLMQYGSC----  122 (224)
Q Consensus        50 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~----  122 (224)
                      .++++++.|++|++||+.+++.+..+..+  ...+.+++|+| +++++ ++++.++.|.+||+.+++.......+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            58999999999999999999988887643  34578999999 77765 677889999999999998777665433    


Q ss_pred             -CceeEEEEcCCCCeEeeeec------------CCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCC
Q psy11351        123 -ESCMSIRFNKAGTQLLGLRR------------RLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSD  189 (224)
Q Consensus       123 -~~v~~~~~~~~~~~l~~~~~------------d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  189 (224)
                       ..+..++|+|++++++++..            +..+.+||..+++....+.....+..     ++|+| ++.++++++.
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~s~-dg~~l~~~~~  154 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM-----LAWAR-DGSKLYGLGR  154 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCC-----EEECT-TSSCEEEESS
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceE-----EEEcC-CCCEEEEEcC
Confidence             34567999999999987753            56688999999888887765555555     55666 7888888765


Q ss_pred             CCeEEEEeCCCCCeE
Q psy11351        190 DFVLYMWRVPRDDIY  204 (224)
Q Consensus       190 d~~v~iw~~~~~~~~  204 (224)
                      +  +.+||..+++..
T Consensus       155 ~--~~~~d~~~~~~~  167 (337)
T d1pbyb_         155 D--LHVMDPEAGTLV  167 (337)
T ss_dssp             S--EEEEETTTTEEE
T ss_pred             C--cceeeeecCcEE
Confidence            5  678999887664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.1e-14  Score=104.08  Aligned_cols=195  Identities=13%  Similarity=0.138  Sum_probs=119.9

Q ss_pred             CCCCCcceEEEEEe-CCCcEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEec-CCCEEEEEecCCccccee
Q psy11351          1 MASGDPIKVLRVIG-NDDHVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASAC-DDGRVLLFDTRSREEATE   74 (224)
Q Consensus         1 ~a~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~   74 (224)
                      ||++++|++|++++ .|+.|++|++.........    .+...+..++|+|+| ++|++++ .++.+.+|+.........
T Consensus        42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~~~  120 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGV  120 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCC-CEEeecccCCCceeeeccccccceec
Confidence            46788899885554 5899999999866543322    455678889999999 6666665 578999998876553322


Q ss_pred             --eccCCcCeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCceeeEee------c-------------------------
Q psy11351         75 --LAVNSGPFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQY------G-------------------------  120 (224)
Q Consensus        75 --~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~------~-------------------------  120 (224)
                        ...+...+.++.++| ++++++.++ .+..+.+|+...........      .                         
T Consensus       121 ~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~  199 (333)
T d1ri6a_         121 VDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  199 (333)
T ss_dssp             EEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC
Confidence              234555677888888 666555554 44557777765432111000      0                         


Q ss_pred             ----------------------------CCCceeEEEEcCCCCeEeee-ecCCCcEEEECCCCCcceec-c---cCCccc
Q psy11351        121 ----------------------------SCESCMSIRFNKAGTQLLGL-RRRLPPVLYNTRSSSPVAQF-D---HEGYYN  167 (224)
Q Consensus       121 ----------------------------~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~~~~~~~~~~-~---~~~~~~  167 (224)
                                                  .......+++++++++++.. ..++.+.+|++......... .   ......
T Consensus       200 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  279 (333)
T d1ri6a_         200 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPR  279 (333)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCC
T ss_pred             ceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCee
Confidence                                        11223456677777765554 34556778877655433333 1   122222


Q ss_pred             ceeeeEEEEeCCCCeEEEE-cCCCCeEEEEe--CCCCCe
Q psy11351        168 SCTMKSCCFAGTQDEYVVS-GSDDFVLYMWR--VPRDDI  203 (224)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~s-~~~d~~v~iw~--~~~~~~  203 (224)
                           .++|+| ++++|++ +..++.|.+|+  ..+|++
T Consensus       280 -----~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         280 -----GFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             -----CEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             -----EEEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence                 367788 6887555 55678999995  456655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=8.1e-15  Score=108.24  Aligned_cols=152  Identities=13%  Similarity=0.051  Sum_probs=111.2

Q ss_pred             EEEcCCCCcEEEEecCCCEEEEEecCCcccceeec-cCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEecCCCceeeEee
Q psy11351         42 LSVDPSQDAIFASACDDGRVLLFDTRSREEATELA-VNSGPFHAVMFNPVEARLV-ATANSKDGIALYDTRKPKEVLMQY  119 (224)
Q Consensus        42 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~  119 (224)
                      ++|++++ +++++++.|++|.+||+.+++.+.+++ .+.....+++|+| +++++ +++..++.|.+||+.+++....+.
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            4688888 899999999999999999999888876 4456678999999 66655 667788999999999997766655


Q ss_pred             cCC------CceeEEEEcCCCCeEeeee------------cCCCcEEEECCCCCcceecc---cCCcccceeeeEEEEeC
Q psy11351        120 GSC------ESCMSIRFNKAGTQLLGLR------------RRLPPVLYNTRSSSPVAQFD---HEGYYNSCTMKSCCFAG  178 (224)
Q Consensus       120 ~~~------~~v~~~~~~~~~~~l~~~~------------~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  178 (224)
                      ...      ..+..++|+|||+++++++            .+..+.+|+..+++....+.   ....+..     ..+++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  154 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL-----MRAAD  154 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC-----EEECT
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE-----EEecC
Confidence            322      2456799999999988765            35668888888776655542   1222222     23333


Q ss_pred             CCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        179 TQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       179 ~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                       ++.+++++   +.+.+|++.+++..
T Consensus       155 -~~~~~~~~---~~~~~~~~~~~~~~  176 (346)
T d1jmxb_         155 -DGSLYVAG---PDIYKMDVKTGKYT  176 (346)
T ss_dssp             -TSCEEEES---SSEEEECTTTCCEE
T ss_pred             -CCEEEEeC---CcceEEEccCCCEE
Confidence             56555543   45889999887764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=4.6e-14  Score=105.88  Aligned_cols=192  Identities=11%  Similarity=-0.010  Sum_probs=117.9

Q ss_pred             CCCCcceEEEEEe----------CCCcEEEEeCCCCceeeEE-ec-------cCCeeEEEEcCCCCcEEEEe-cCCCEEE
Q psy11351          2 ASGDPIKVLRVIG----------NDDHVISHDMASGDPIDFY-LH-------ERPVYGLSVDPSQDAIFASA-CDDGRVL   62 (224)
Q Consensus         2 a~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~-------~~~v~~~~~~~~~~~~l~s~-~~d~~i~   62 (224)
                      ++..+|+.+++.+          .|++|++||..+++++... .+       ......++|+|+| ++++.+ ..++.+.
T Consensus        71 a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-k~l~va~~~~~~v~  149 (368)
T d1mdah_          71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAA  149 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEE
T ss_pred             eECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC-CEEEEEeCCCCeEE
Confidence            4566777777654          4778999999999987766 22       2234579999999 555544 5679999


Q ss_pred             EEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEec---------------------------------
Q psy11351         63 LFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDT---------------------------------  109 (224)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~---------------------------------  109 (224)
                      +||+.+++....+..+.....    .|.....++..+.||.+.++++                                 
T Consensus       150 ~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  225 (368)
T d1mdah_         150 GLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence            999999887766654332110    0112223333333333333332                                 


Q ss_pred             -------------CCCceeeEee--c----------CCCceeEEEEcCCCCeEeeeecC---------CCcEEEECCCCC
Q psy11351        110 -------------RKPKEVLMQY--G----------SCESCMSIRFNKAGTQLLGLRRR---------LPPVLYNTRSSS  155 (224)
Q Consensus       110 -------------~~~~~~~~~~--~----------~~~~v~~~~~~~~~~~l~~~~~d---------~~v~v~d~~~~~  155 (224)
                                   ..........  .          .......+++++++..++....+         ..+.+||..+++
T Consensus       226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~  305 (368)
T d1mdah_         226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence                         2211110000  0          00112347788887776654322         248899999998


Q ss_pred             cceecccCCcccceeeeEEEEeCCCCe--EEEEcCCCCeEEEEeCCCCCeE
Q psy11351        156 PVAQFDHEGYYNSCTMKSCCFAGTQDE--YVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+..+.....+.     .+.|+| +++  +++++..|+.|++||..+++..
T Consensus       306 ~~~~~~~~~~~~-----~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         306 TSGPISNGHDSD-----AIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EEECCEEEEEEC-----EEEECC-SSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             EeEEecCCCcee-----EEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            887775444433     367777 564  4678888999999999999875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.50  E-value=4.3e-12  Score=94.73  Aligned_cols=159  Identities=8%  Similarity=-0.154  Sum_probs=115.9

Q ss_pred             eccCCeeEEEEcCCCCcEEEEe-----cCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEec---------
Q psy11351         34 LHERPVYGLSVDPSQDAIFASA-----CDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATAN---------   99 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------   99 (224)
                      .+..++.+++++|++ +.++..     +.++.+.+||..+++.+..+..+..  ..++|+| +++++++++         
T Consensus        18 ~~~~p~~~~a~spdg-~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~Sp-DG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          18 AADGPTNDEAPGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAH-SGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cCCCCccccccCCCC-CEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcC-CCCEEEEEeecCCccccc
Confidence            577889999999999 555443     3456899999999998888876554  3799999 888887764         


Q ss_pred             -CCCcEEEEecCCCceeeEeecCCCc-------eeEEEEcCCCCeEeeee--cCCCcEEEECCCCCcceecccCCcccce
Q psy11351        100 -SKDGIALYDTRKPKEVLMQYGSCES-------CMSIRFNKAGTQLLGLR--RRLPPVLYNTRSSSPVAQFDHEGYYNSC  169 (224)
Q Consensus       100 -~dg~v~i~d~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~--~d~~v~v~d~~~~~~~~~~~~~~~~~~~  169 (224)
                       .++.|.+||+.+++....+..+...       ...+.|+++++.++...  .++.+.+|+....+......   ...  
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~--  168 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---SPT--  168 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---cce--
Confidence             4578999999999877666544332       24578899988776654  45678888887765544432   112  


Q ss_pred             eeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        170 TMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                         .+.++|.....+++.+.|+.+.+|+...++..
T Consensus       169 ---~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         169 ---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             ---eEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence               25566644456788999999999999887664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=5.7e-12  Score=97.27  Aligned_cols=139  Identities=11%  Similarity=0.101  Sum_probs=104.2

Q ss_pred             CcceEEEEEeCCCcEEEEeCCCCceeeEE------eccCCeeEEEEcCCCCcEEEEec---------CCCEEEEEecCCc
Q psy11351          5 DPIKVLRVIGNDDHVISHDMASGDPIDFY------LHERPVYGLSVDPSQDAIFASAC---------DDGRVLLFDTRSR   69 (224)
Q Consensus         5 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~   69 (224)
                      +.++++.  ..|+.+.+||+.+++....+      .|...|.++.|+||+ ++|+.++         .++.+.+||+.++
T Consensus        26 ~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          26 SDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             SSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCC
Confidence            3455554  45889999999999877655      345789999999999 7777764         3578899999988


Q ss_pred             ccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec------------------CCCceeEEEEc
Q psy11351         70 EEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG------------------SCESCMSIRFN  131 (224)
Q Consensus        70 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------------------~~~~v~~~~~~  131 (224)
                      + ...+..+...+..+.|+| +++.+|.. .++.+.+|+...++.......                  ..+....+.||
T Consensus       103 ~-~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS  179 (470)
T d2bgra1         103 Q-LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (470)
T ss_dssp             E-ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             c-ccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence            7 456777888999999999 88888886 567899999987754433221                  12334668899


Q ss_pred             CCCCeEeeeecCCC-cEEE
Q psy11351        132 KAGTQLLGLRRRLP-PVLY  149 (224)
Q Consensus       132 ~~~~~l~~~~~d~~-v~v~  149 (224)
                      |||++|+....|.. +..|
T Consensus       180 PDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         180 PNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             TTSSEEEEEEEECTTCCEE
T ss_pred             CCCCccceeEecCCcCceE
Confidence            99999998766543 4444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=2e-11  Score=92.40  Aligned_cols=185  Identities=9%  Similarity=-0.039  Sum_probs=120.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEe-------------------------------ccCCeeEEEEcCCCCcEEEEecC
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYL-------------------------------HERPVYGLSVDPSQDAIFASACD   57 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------------~~~~v~~~~~~~~~~~~l~s~~~   57 (224)
                      .+++++.+|+|++|++.+++.++.+.                               |.-......+.|||..++++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            36788899999999999887666541                               22234445567898444466678


Q ss_pred             CCEEEEEecCCcccceeec-cCCcCeEEEEEcCCCCC--eEEEecCCC-----------------cEEEEecCCCceeeE
Q psy11351         58 DGRVLLFDTRSREEATELA-VNSGPFHAVMFNPVEAR--LVATANSKD-----------------GIALYDTRKPKEVLM  117 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~--~l~~~~~dg-----------------~v~i~d~~~~~~~~~  117 (224)
                      +.+|.++|+++.+....+. .+......++|+| +++  +++..+.+.                 .+..+|..+.+...+
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            8999999999998776654 3456789999999 555  333333321                 134577777665555


Q ss_pred             eecCCCceeEEEEcCCCCeEeeeecCC-----------------------------------------CcEEEECCCCCc
Q psy11351        118 QYGSCESCMSIRFNKAGTQLLGLRRRL-----------------------------------------PPVLYNTRSSSP  156 (224)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------------~v~v~d~~~~~~  156 (224)
                      +.- ......+.|+|+|+++++.+.+.                                         .+.+++....+.
T Consensus       172 I~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v  250 (441)
T d1qnia2         172 VIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF  250 (441)
T ss_dssp             EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS
T ss_pred             Eec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCce
Confidence            443 24567899999999888776432                                         223333333333


Q ss_pred             ceecccCCcccceeeeEEEEeCCCCeE-EEEcCCCCeEEEEeCCCC
Q psy11351        157 VAQFDHEGYYNSCTMKSCCFAGTQDEY-VVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~v~iw~~~~~  201 (224)
                      +..+.-......     +.++| ++++ ++++..+++|.+||+.+.
T Consensus       251 ~~~IPvgksPhG-----v~vSP-DGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         251 TRYIPVPKNPHG-----LNTSP-DGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             EEEECCBSSCCC-----EEECT-TSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEEeCCCCccC-----ceECC-CCCEEEEeCCcCCcEEEEEeehh
Confidence            333322222233     56666 6776 567888999999998653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=4.5e-12  Score=97.86  Aligned_cols=145  Identities=8%  Similarity=0.122  Sum_probs=105.1

Q ss_pred             eeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-----ccCCcCeEEEEEcCCCCCeEEEecC---------CCcE
Q psy11351         39 VYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-----AVNSGPFHAVMFNPVEARLVATANS---------KDGI  104 (224)
Q Consensus        39 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v  104 (224)
                      -..+.|.+++ +++..  .|+.+.+||+.+++....+     ..|...|.++.|+| ++++|+.++.         ++.+
T Consensus        19 ~~~~~W~~d~-~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          19 LYSLRWISDH-EYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCCCEECSSS-EEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccCCEeCCCC-EEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceE
Confidence            3468899988 66654  4788999999999865433     45567899999999 8888887743         5678


Q ss_pred             EEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccC--Ccc-cc-----------ee
Q psy11351        105 ALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHE--GYY-NS-----------CT  170 (224)
Q Consensus       105 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~--~~~-~~-----------~~  170 (224)
                      .+||+.+++ ...+..+...+..+.|||||+.++... ++.+++|+..+++........  ..+ +.           -.
T Consensus        95 ~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          95 DIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            999999874 556777888999999999999999864 667999999888766544211  100 00           00


Q ss_pred             eeEEEEeCCCCeEEEEcCCC
Q psy11351        171 MKSCCFAGTQDEYVVSGSDD  190 (224)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~d  190 (224)
                      .....|+| +++.|+....|
T Consensus       173 ~~~~~wSP-DGk~ia~~~~d  191 (470)
T d2bgra1         173 YSALWWSP-NGTFLAYAQFN  191 (470)
T ss_dssp             SBCEEECT-TSSEEEEEEEE
T ss_pred             ccccEECC-CCCccceeEec
Confidence            12256888 78888877544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=5.3e-11  Score=87.98  Aligned_cols=160  Identities=8%  Similarity=-0.018  Sum_probs=107.4

Q ss_pred             eeEEEEcCCCCcEEEEe-----cCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEe----------cCCCc
Q psy11351         39 VYGLSVDPSQDAIFASA-----CDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATA----------NSKDG  103 (224)
Q Consensus        39 v~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~  103 (224)
                      +.-.+.+|++ +.++..     ..+..+.+||..+++.+.++..+..  ..++|+| ++++|++.          ..++.
T Consensus         4 ~~~~a~spdg-~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           4 RILEAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVAD-DGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CBCCCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECT-TSSCEEEEEEEEEETTEEEEEEE
T ss_pred             cEeEeeCCCC-CEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcC-CCCEEEEEeCCCccccccCCCCE
Confidence            3344568998 555443     4567899999999998888876544  3799999 77777654          34788


Q ss_pred             EEEEecCCCceeeEeecCC-------CceeEEEEcCCCCeEeeee--cCCCcEEEECCCCCcceecccCCcc--------
Q psy11351        104 IALYDTRKPKEVLMQYGSC-------ESCMSIRFNKAGTQLLGLR--RRLPPVLYNTRSSSPVAQFDHEGYY--------  166 (224)
Q Consensus       104 v~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~d~~v~v~d~~~~~~~~~~~~~~~~--------  166 (224)
                      |.+||+.+++....+..+.       .....++|+|+++++++.+  .+..+.+|+..+++.+..+......        
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD  159 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence            9999999987766654321       2345689999999887764  4566889998887655443110000        


Q ss_pred             ---------------------------------cceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        167 ---------------------------------NSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       167 ---------------------------------~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                                                       ....+....+.+ ++..++.++.++.+++|++..++.
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSC
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcE
Confidence                                             000011123444 355677778899999999988765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=7.9e-10  Score=78.59  Aligned_cols=190  Identities=13%  Similarity=0.102  Sum_probs=120.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcC
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGP   81 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~   81 (224)
                      |++..++++++....+.+++++-.+...+..........++++.+++ +++++-..+..+..++................
T Consensus        63 av~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (260)
T d1rwia_          63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLND  141 (260)
T ss_dssp             EECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECCCCSCCS
T ss_pred             EEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccc-eeEeeccccccccccccccceeeeeeecccCC
Confidence            45566777777666666766665555444433444678899999998 77777777777877776544322211122234


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecc
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFD  161 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~  161 (224)
                      ...+++++ +++++++...++.|..+|...................++++++|+++++....+.|..++..... ...+.
T Consensus       142 p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~  219 (260)
T d1rwia_         142 PDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLP  219 (260)
T ss_dssp             CCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECC
T ss_pred             cceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEc
Confidence            57899999 77888888888899999987654333223445667899999999887777777778777765432 22221


Q ss_pred             cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeC
Q psy11351        162 HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRV  198 (224)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~  198 (224)
                      ..+ ...  ...+++.+ ++.++++-..+++|+.++.
T Consensus       220 ~~~-~~~--P~~i~~d~-~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         220 FTG-LNT--PLAVAVDS-DRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCS-CCC--EEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred             cCC-CCC--eEEEEEeC-CCCEEEEECCCCEEEEEeC
Confidence            111 111  12356665 5777777666676665544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.23  E-value=5.3e-10  Score=84.54  Aligned_cols=191  Identities=7%  Similarity=-0.019  Sum_probs=122.9

Q ss_pred             CCcceEEEEE-eCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCc-EEEEecCCC-----------------EEE
Q psy11351          4 GDPIKVLRVI-GNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDA-IFASACDDG-----------------RVL   62 (224)
Q Consensus         4 ~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~-~l~s~~~d~-----------------~i~   62 (224)
                      +.+|++|... ..+.+|.++|+.+++.....  .+...+..++|+|++.. +++..+++.                 .+.
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            3468877555 47789999999999887765  56788999999999843 444444332                 234


Q ss_pred             EEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCC-----------------------------------------
Q psy11351         63 LFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSK-----------------------------------------  101 (224)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------------------------------------  101 (224)
                      .+|..+.+....+... +....+.|+| +++++++++.+                                         
T Consensus       160 ~iD~~t~~v~~qI~v~-~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~  237 (441)
T d1qnia2         160 AIDAETMDVAWQVIVD-GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS  237 (441)
T ss_dssp             EEETTTCSEEEEEEES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred             eecCccceeeEEEecC-CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence            5777777666555543 3467899999 77777666533                                         


Q ss_pred             CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEee-eecCCCcEEEECCCCCcc--------eecccCCcccceeee
Q psy11351        102 DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLG-LRRRLPPVLYNTRSSSPV--------AQFDHEGYYNSCTMK  172 (224)
Q Consensus       102 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~v~d~~~~~~~--------~~~~~~~~~~~~~~~  172 (224)
                      +.+.+++....+....+.. ......+.++|||+++++ +..+++|.+||+++.+..        ..+. ...-..+...
T Consensus       238 ~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~-~~~~~glgpl  315 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV-AEPELGLGPL  315 (441)
T ss_dssp             CCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE-ECCBCCSCEE
T ss_pred             CcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE-eecccccCcc
Confidence            2233333333322223322 334577999999998765 567899999998753211        1110 0000111123


Q ss_pred             EEEEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        173 SCCFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       173 ~~~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      ...|.+ ++..+.+...|.+|..|++.
T Consensus       316 h~~fd~-~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         316 HTTFDG-RGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEECS-SSEEEEEETTTTEEEEEEHH
T ss_pred             cceecC-CceEEEcccccceEEEeccc
Confidence            357877 68889999999999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.21  E-value=7.1e-09  Score=75.15  Aligned_cols=191  Identities=9%  Similarity=0.037  Sum_probs=128.6

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc-ceee--cc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE-ATEL--AV   77 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~--~~   77 (224)
                      ||+..+|+++++...+++|..|+.. ++..........+.+++|.|+| +++++...++.+..++...... ...+  ..
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLP  110 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccccC
Confidence            4677889999999999999999865 4444445677889999999999 7888888888888887654332 1122  12


Q ss_pred             CCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec----------CCCceeEEEEcCCCCeEeeeecCCCcE
Q psy11351         78 NSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG----------SCESCMSIRFNKAGTQLLGLRRRLPPV  147 (224)
Q Consensus        78 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~~v~  147 (224)
                      .......+++.+ +++++++.+.++.+..+|...+........          .......+.++. +..+++.+..+.|+
T Consensus       111 ~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         111 DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLL  188 (302)
T ss_dssp             TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEE
T ss_pred             CccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEE
Confidence            345678999999 888998888889999999887643332221          112345566553 23444455667788


Q ss_pred             EEECCCCCcceec---ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        148 LYNTRSSSPVAQF---DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       148 v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      .++..........   ........     +++.+ +++++++...++.|..++....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~pdg-----ia~d~-dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNIDD-----FAFDV-EGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCCSS-----EEEBT-TCCEEEECBTTCCEEEECTTCC
T ss_pred             eccccccccccccccccCCCCCcc-----eEECC-CCCEEEEEcCCCcEEEECCCCC
Confidence            8887654333222   12222333     55555 7888888888889999876654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=5.4e-09  Score=74.17  Aligned_cols=192  Identities=8%  Similarity=0.027  Sum_probs=120.0

Q ss_pred             CCCCcceEEEEE-eCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCC
Q psy11351          2 ASGDPIKVLRVI-GNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus         2 a~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      |.+.+|++.++. +..+.+..++.......... .-......+++++++ +++++....+.+++++-.+...+..... .
T Consensus        20 avd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~   97 (260)
T d1rwia_          20 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVLPFDG-L   97 (260)
T ss_dssp             EECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEECCCCS-C
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeeeeeee-e
Confidence            456666655543 44466666665543332222 223456789999998 7888888777777776555444333322 2


Q ss_pred             cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCccee
Q psy11351         80 GPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQ  159 (224)
Q Consensus        80 ~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~  159 (224)
                      .....+++.+ +++++++-..+..+..++...................++++++++.+++...++.|..++.........
T Consensus        98 ~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~  176 (260)
T d1rwia_          98 NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL  176 (260)
T ss_dssp             CSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred             eecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeee
Confidence            4578999999 778887776777777777655432222222234567899999999888777778899998765433222


Q ss_pred             c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        160 F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      . ..-....     .+++.+ +++++++....+.|..++.....
T Consensus       177 ~~~~~~~p~-----gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         177 PFTDITAPW-----GIAVDE-AGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             CCSSCCSEE-----EEEECT-TCCEEEEETTTTEEEEECTTCSC
T ss_pred             eccccCCCc-----cceeee-eeeeeeeecCCCEEEEEeCCCCe
Confidence            1 1212222     355655 68888888888899888766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=3.4e-09  Score=78.86  Aligned_cols=136  Identities=8%  Similarity=-0.109  Sum_probs=91.8

Q ss_pred             EeCCCc--EEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEe----------cCCCEEEEEecCCcccceeeccCC
Q psy11351         13 IGNDDH--VISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASA----------CDDGRVLLFDTRSREEATELAVNS   79 (224)
Q Consensus        13 ~~~dg~--i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~   79 (224)
                      ...+++  +.+||..+++.+... .+..  ..++|+|++ +.++.+          +.|+.|.+||..+++++..+..+.
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~  116 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFL--SLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTT--CEEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCC--CcceECCCC-CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc
Confidence            344454  667799999988777 3333  358999999 666653          457889999999998877665332


Q ss_pred             c-------CeEEEEEcCCCCCeEEEec-CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEEC
Q psy11351         80 G-------PFHAVMFNPVEARLVATAN-SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNT  151 (224)
Q Consensus        80 ~-------~i~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~  151 (224)
                      .       ....++|+| ++++++.+. .++.+.+||+.+.+....+..+.....   +......++..+.|+.+.++++
T Consensus       117 ~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         117 APRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             SCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEEC
T ss_pred             cceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEe
Confidence            2       224689999 777776664 579999999999877666654333211   1112345556667777777777


Q ss_pred             CCCC
Q psy11351        152 RSSS  155 (224)
Q Consensus       152 ~~~~  155 (224)
                      ....
T Consensus       193 ~~~~  196 (368)
T d1mdah_         193 AAAP  196 (368)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            6543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.06  E-value=4e-07  Score=67.56  Aligned_cols=159  Identities=13%  Similarity=0.137  Sum_probs=96.8

Q ss_pred             CCeeEEEEcCCCCcEEEEe-cCCCEEEEEecCCcccc---eee--ccCCcCeEEEEEcCCCCCeE-EEecCCCcEEEEec
Q psy11351         37 RPVYGLSVDPSQDAIFASA-CDDGRVLLFDTRSREEA---TEL--AVNSGPFHAVMFNPVEARLV-ATANSKDGIALYDT  109 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~---~~~--~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~i~d~  109 (224)
                      ..+.++.|+|+| ++++++ .....|.+|+......+   ...  .........++|+| +++++ ++...++.|.+|++
T Consensus       145 ~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         145 TGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             CCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence            357899999999 555544 44568888876543221   111  12235678999999 66655 55567888999998


Q ss_pred             CCCceeeEee-------------------cCCCceeEEEEcCCCCeEeeeec-CCC-----cEEEECCCCCcceec----
Q psy11351        110 RKPKEVLMQY-------------------GSCESCMSIRFNKAGTQLLGLRR-RLP-----PVLYNTRSSSPVAQF----  160 (224)
Q Consensus       110 ~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~~-d~~-----v~v~d~~~~~~~~~~----  160 (224)
                      ...+......                   ........+.++|+|++|+++.. +..     |..|++.....+...    
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            7654221111                   01123467899999999988743 222     666766543322221    


Q ss_pred             ---ccCCcccceeeeEEEEeCCCCeEE-EEcCCCCeEEEEeCCCCC
Q psy11351        161 ---DHEGYYNSCTMKSCCFAGTQDEYV-VSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       161 ---~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~v~iw~~~~~~  202 (224)
                         ........     +.++|.++++| ++...++.|.+|+++...
T Consensus       303 ~~~~~G~~p~~-----i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         303 PTPTSGGHSNA-----VSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             ECSSCCTTCCC-----EEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEcCCCCccE-----EEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence               01122222     55666457765 555678999999886654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=1.2e-07  Score=67.73  Aligned_cols=186  Identities=12%  Similarity=0.199  Sum_probs=124.2

Q ss_pred             ceEEEE-EeCCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee--ccCCcC
Q psy11351          7 IKVLRV-IGNDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL--AVNSGP   81 (224)
Q Consensus         7 ~~~l~~-~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~   81 (224)
                      +..+++ .+.++.|..++.. ++....+  ........+++.+++ .++++....+.+.+++.. ++.+..+  ..+...
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~  158 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF  158 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred             cccceeccCCcccccccccc-ccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccC-Cceeecccccccccc
Confidence            333433 3344567677654 5555555  345667899999998 788887778888888854 4444444  334557


Q ss_pred             eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeec-CCCcEEEECCCCCcce
Q psy11351         82 FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRR-RLPPVLYNTRSSSPVA  158 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~v~v~d~~~~~~~~  158 (224)
                      ...+++.+ +++++++....+.|++||.. ++.+..+.  +.......++++++|+.+++-.. +..|.+|+. +++.+.
T Consensus       159 ~~~i~~d~-~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~  235 (279)
T d1q7fa_         159 PNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  235 (279)
T ss_dssp             EEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             cceeeecc-ceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEE
Confidence            78899998 78888888888999999975 44444443  24456789999999997766443 445888884 577666


Q ss_pred             ecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCC
Q psy11351        159 QFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDD  202 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~  202 (224)
                      .+.......  ....+++.| ++.++++ +.++.|++|......
T Consensus       236 ~~~~~~~~~--~p~~vav~~-dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         236 ALESKVKHA--QCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEESSCCS--CEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EEeCCCCCC--CEeEEEEeC-CCcEEEE-eCCCeEEEEEeeeec
Confidence            663221111  123356666 6776665 468999999987754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.01  E-value=1.3e-07  Score=68.82  Aligned_cols=192  Identities=10%  Similarity=0.062  Sum_probs=119.9

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-ecc----CCeeEEEEcCCCCcEEEEecC---------------CCEE
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHE----RPVYGLSVDPSQDAIFASACD---------------DGRV   61 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~----~~v~~~~~~~~~~~~l~s~~~---------------d~~i   61 (224)
                      +++++++.++++...+.|...+.+........ ...    ...+++++.++| ++.++-..               +|.|
T Consensus        77 ~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_          77 QCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             EECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceE
Confidence            45566777777776677888888765433222 111    236789999998 67776321               2345


Q ss_pred             EEEecCCcccceeeccCCcCeEEEEEcCCCCC-----eEEEecCCCcEEEEecCCCceeeE---ee---c-CCCceeEEE
Q psy11351         62 LLFDTRSREEATELAVNSGPFHAVMFNPVEAR-----LVATANSKDGIALYDTRKPKEVLM---QY---G-SCESCMSIR  129 (224)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~~~~~dg~v~i~d~~~~~~~~~---~~---~-~~~~v~~~~  129 (224)
                      ..++.. ++.. .+...-..-+.++|+| ++.     ++++-+..+.|..||+.....+..   +.   . .......++
T Consensus       156 ~~~~~d-g~~~-~~~~~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         156 YCFTTD-GQMI-QVDTAFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEECTT-SCEE-EEEEEESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             EEEeec-Ccee-EeeCCcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            444432 2222 2222222346788988 443     556667788999998865433321   11   1 223456899


Q ss_pred             EcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        130 FNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       130 ~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +.++|+..++....+.|.+||.+.++.+..+.....    ....++|.|+...++++.+.++.|..+++...
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            999999888777788899999988877666632211    12347888743347788888899988887543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.6e-08  Score=74.57  Aligned_cols=133  Identities=8%  Similarity=0.042  Sum_probs=87.8

Q ss_pred             eCCCcEEEEeCCCCceeeEEe----ccCCeeEEEEcCCCCcEEEEe---------cCCCEEEEEecCCccccee--eccC
Q psy11351         14 GNDDHVISHDMASGDPIDFYL----HERPVYGLSVDPSQDAIFASA---------CDDGRVLLFDTRSREEATE--LAVN   78 (224)
Q Consensus        14 ~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~---------~~d~~i~iwd~~~~~~~~~--~~~~   78 (224)
                      ..+|.|.+||+.+++....+.    ....+....|+|++ +.++..         +..+.+.++|+.+++....  ....
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~  112 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS  112 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence            467899999999887655552    23467788899999 555543         4467899999998874322  2233


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeec-CCC-----------------ceeEEEEcCCCCeEeee
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYG-SCE-----------------SCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~-----------------~v~~~~~~~~~~~l~~~  140 (224)
                      ...+....|+| +++.+|-. .++.|.+.+...+........ ...                 .-..+-|||||++|+..
T Consensus       113 ~~~l~~~~wSP-DG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         113 NAKLQYAGWGP-KGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             SCCCSBCCBCS-STTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccceeeecc-CCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            44566789999 77777766 456788888776544333321 111                 12467899999999886


Q ss_pred             ecC-CCcEEE
Q psy11351        141 RRR-LPPVLY  149 (224)
Q Consensus       141 ~~d-~~v~v~  149 (224)
                      ..| ..+..+
T Consensus       191 ~~D~s~V~~~  200 (465)
T d1xfda1         191 AINDSRVPIM  200 (465)
T ss_dssp             EEECTTSCEE
T ss_pred             Eeccccccee
Confidence            533 334444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.95  E-value=3.7e-07  Score=66.44  Aligned_cols=196  Identities=8%  Similarity=0.037  Sum_probs=120.1

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecC----CCEEEEEecCCcccceeec
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACD----DGRVLLFDTRSREEATELA   76 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~   76 (224)
                      +.++.|+++++-...+.|..|+.++++..... ........++++++| +++++...    .+.+...+...........
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~  124 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIE  124 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence            45667787777778888988988877665554 566678999999998 67766432    2345555555444322222


Q ss_pred             c--CCcCeEEEEEcCCCCCeEEEecCC------CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee-ecCCCcE
Q psy11351         77 V--NSGPFHAVMFNPVEARLVATANSK------DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL-RRRLPPV  147 (224)
Q Consensus        77 ~--~~~~i~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~  147 (224)
                      .  .......+++.+ +++++++....      +.+..++.... .+..+...-.....++|+|+++.|+.+ +..+.|+
T Consensus       125 ~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         125 DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             CCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceE
Confidence            1  123578899999 77877764322      23444554332 223333233445789999999876555 5567899


Q ss_pred             EEECCCC-Ccceecc----c-CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        148 LYNTRSS-SPVAQFD----H-EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       148 v~d~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .|++... .......    . .....  ...-+++.. ++++.++...++.|.+||. .|+..
T Consensus       203 ~~d~~~~g~~~~~~~~~~~~~~~~~~--~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         203 RIALEDDGVTIQPFGATIPYYFTGHE--GPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSSS--EEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             EEEEcCCCceeccccceeeeccCCcc--ceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEE
Confidence            9988643 2221110    0 00000  112355555 6888888888999999995 56653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=1.7e-06  Score=61.63  Aligned_cols=194  Identities=10%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEec-------cCCeeEEEEcCCCCcEEEE-ecCCCEEEEEecCCcccc
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYLH-------ERPVYGLSVDPSQDAIFAS-ACDDGRVLLFDTRSREEA   72 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~   72 (224)
                      ||++..++++++-...+.|++||.+ ++.+..++.       ......+++.++....+++ .+.++.|..++. .++..
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~  105 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFV  105 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cccce
Confidence            4566778887777777889999965 666655521       1234556665554344443 445567777775 35544


Q ss_pred             eeec-cCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee--cCCCceeEEEEcCCCCeEeeeecCCCcEEE
Q psy11351         73 TELA-VNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY--GSCESCMSIRFNKAGTQLLGLRRRLPPVLY  149 (224)
Q Consensus        73 ~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~  149 (224)
                      ..+. ........+++.+ ++.++++....+.+.+++.. ++.+..+.  .+......+++.++++.+++....+.|++|
T Consensus       106 ~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~  183 (279)
T d1q7fa_         106 RKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  183 (279)
T ss_dssp             EEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             eecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeee
Confidence            4442 2334567899998 77888887777888888865 43444442  355677889999999988888888899999


Q ss_pred             ECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcC-CCCeEEEEeCCCCCe
Q psy11351        150 NTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS-DDFVLYMWRVPRDDI  203 (224)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~v~iw~~~~~~~  203 (224)
                      |.. ++.+..+...+....  ...+++.+ +++++++-. .++.|.+|+. +|+.
T Consensus       184 d~~-G~~~~~~g~~g~~~~--P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~  233 (279)
T d1q7fa_         184 NYE-GQYLRQIGGEGITNY--PIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQL  233 (279)
T ss_dssp             ETT-CCEEEEESCTTTSCS--EEEEEECT-TCCEEEEECSSSCEEEEECT-TSCE
T ss_pred             ecC-CceeeeecccccccC--Cccccccc-CCeEEEEECCCCcEEEEECC-CCCE
Confidence            975 566666643333221  22356666 677777654 4557999984 4553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.3e-06  Score=61.40  Aligned_cols=194  Identities=8%  Similarity=-0.016  Sum_probs=113.8

Q ss_pred             CCCcceEEEEEeCCC---cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc-cceeeccC
Q psy11351          3 SGDPIKVLRVIGNDD---HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE-EATELAVN   78 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~   78 (224)
                      .+++|+.||-.....   .+.+.+...+.......+........|+|++..+++....++...++...... ........
T Consensus        46 wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (269)
T d2hqsa1          46 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG  125 (269)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC
T ss_pred             ECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeec
Confidence            467788887665433   46777777777766667888899999999995555545444444333332222 12222233


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCC-C--cEEEECCC
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRL-P--PVLYNTRS  153 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~--v~v~d~~~  153 (224)
                      ........+++.....+++...++.  +.+.++.... ...............|+|+++.++..+.++ .  +.+.+...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~  204 (269)
T d2hqsa1         126 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  204 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             cccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecCCceeeeEeeccc
Confidence            3444555677734455555555655  4555555442 233344556777889999999888776544 3  44445444


Q ss_pred             CCcceecccCCcccceeeeEEEEeCCCCeEEEEcC---CCCeEEEEeCCCCCeE
Q psy11351        154 SSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGS---DDFVLYMWRVPRDDIY  204 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~v~iw~~~~~~~~  204 (224)
                      +.. ..........     ...|+| ||+.|+-.+   ....|+++++..+...
T Consensus       205 ~~~-~~~~~~~~~~-----~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         205 GGV-QVLSSTFLDE-----TPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             CCE-EECCCSSSCE-----EEEECT-TSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             ccc-eEeecCcccc-----ceEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            432 2222222221     247888 677765333   3457899999887653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=6.3e-07  Score=64.64  Aligned_cols=169  Identities=17%  Similarity=0.082  Sum_probs=111.5

Q ss_pred             eeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEe
Q psy11351         29 PIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYD  108 (224)
Q Consensus        29 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d  108 (224)
                      .+..+.-...+..+++.|+| +++++...+++|..||... + ...+......+.+++|++ +++++++...++.+..++
T Consensus        20 v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          20 IITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             EEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEE
T ss_pred             EEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEE
Confidence            33444334468899999999 7999999999998888553 3 334445567789999999 888988888888888887


Q ss_pred             cCCCce-eeEe--ecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceeccc--CC----cccceeeeEEEEeCC
Q psy11351        109 TRKPKE-VLMQ--YGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDH--EG----YYNSCTMKSCCFAGT  179 (224)
Q Consensus       109 ~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~  179 (224)
                      ...... ...+  .........+++.++++++++.+.++.+..++...+........  ..    .........+.+.  
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--  173 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--  173 (302)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--
T ss_pred             ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--
Confidence            654322 1222  23455678999999999888877788788888776532211100  00    0000011112333  


Q ss_pred             CCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        180 QDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       180 ~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      .+.++++.+..+.|+.++......
T Consensus       174 ~~~l~~~~~~~~~i~~~~~~~~~~  197 (302)
T d2p4oa1         174 GNFLYVSNTEKMLLLRIPVDSTDK  197 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSC
T ss_pred             CCceeeecCCCCeEEecccccccc
Confidence            456677778888998888776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.83  E-value=3e-07  Score=68.27  Aligned_cols=152  Identities=7%  Similarity=-0.031  Sum_probs=98.8

Q ss_pred             CCCCcceEEEEEeC-CCcEEEEeCCCC-ceeeE--E---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccccee
Q psy11351          2 ASGDPIKVLRVIGN-DDHVISHDMASG-DPIDF--Y---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATE   74 (224)
Q Consensus         2 a~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~--~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~   74 (224)
                      +++++|++++++.. ...|.+|+.... +....  .   ........+.|+|+++.+.++...+++|.+|++..++....
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~  230 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEE
Confidence            45778887777763 457888876543 22211  1   24567899999999955557777899999999876542211


Q ss_pred             ec-------------------cCCcCeEEEEEcCCCCCeEEEecC------CCcEEEEecCCCceeeEee------cCCC
Q psy11351         75 LA-------------------VNSGPFHAVMFNPVEARLVATANS------KDGIALYDTRKPKEVLMQY------GSCE  123 (224)
Q Consensus        75 ~~-------------------~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~------~~~~  123 (224)
                      ..                   .+......+.++| ++++++++..      .+.|..|++.....+....      ....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~  309 (365)
T d1jofa_         231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG  309 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred             EEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCC
Confidence            10                   1122456789999 8888777632      2237778776543322111      2344


Q ss_pred             ceeEEEEcC-CCCeEeeee-cCCCcEEEECCCC
Q psy11351        124 SCMSIRFNK-AGTQLLGLR-RRLPPVLYNTRSS  154 (224)
Q Consensus       124 ~v~~~~~~~-~~~~l~~~~-~d~~v~v~d~~~~  154 (224)
                      ....++++| +|++|+++. .++.|.+|+++..
T Consensus       310 ~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            567899998 799887764 5688999987543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.75  E-value=3e-06  Score=61.40  Aligned_cols=196  Identities=12%  Similarity=0.049  Sum_probs=114.0

Q ss_pred             CCCCcceEEEEEeC-------CCcEEEEeCCCCceeeEE-e----ccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc
Q psy11351          2 ASGDPIKVLRVIGN-------DDHVISHDMASGDPIDFY-L----HERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR   69 (224)
Q Consensus         2 a~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~-~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~   69 (224)
                      |++.+|+++++...       +|+|..||.++++..... .    ..+....+.|.+++ +.++++.....|...|....
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEEEEEETTSC
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeEEEEeCCCc
Confidence            45567776665432       467888998887654433 1    22346789999998 67777766677888887654


Q ss_pred             ccceeeccCC----cCeEEEEEcCCCCCeEEEecC---------------CCcEEEEecCCCceeeEeecCCCceeEEEE
Q psy11351         70 EEATELAVNS----GPFHAVMFNPVEARLVATANS---------------KDGIALYDTRKPKEVLMQYGSCESCMSIRF  130 (224)
Q Consensus        70 ~~~~~~~~~~----~~i~~~~~~~~~~~~l~~~~~---------------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~  130 (224)
                      ..........    ...+.+++.+ ++++.++-..               .|.|..++.. + ........-.....++|
T Consensus       103 ~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g-~~~~~~~~~~~pNGi~~  179 (314)
T d1pjxa_         103 FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVDTAFQFPNGIAV  179 (314)
T ss_dssp             EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEEEEESSEEEEEE
T ss_pred             EEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-C-ceeEeeCCcceeeeeEE
Confidence            3221111111    1357899999 7787776422               2334444432 2 22222222334467899


Q ss_pred             cCCCC----eEee-eecCCCcEEEECCCCCccee---c-ccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCC
Q psy11351        131 NKAGT----QLLG-LRRRLPPVLYNTRSSSPVAQ---F-DHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRD  201 (224)
Q Consensus       131 ~~~~~----~l~~-~~~d~~v~v~d~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~  201 (224)
                      +|++.    .|++ -+..+.|+.||+.....+..   + ...+... .....+++.. +++++++....+.|.+||...+
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE-GGADGMDFDE-DNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS-CEEEEEEEBT-TCCEEEEEETTTEEEEECTTCB
T ss_pred             CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc-ccceeeEEec-CCcEEEEEcCCCEEEEEeCCCC
Confidence            98764    4444 45667788888754322211   1 1111100 0122355555 6888888777899999998876


Q ss_pred             Ce
Q psy11351        202 DI  203 (224)
Q Consensus       202 ~~  203 (224)
                      +.
T Consensus       258 ~~  259 (314)
T d1pjxa_         258 QP  259 (314)
T ss_dssp             SC
T ss_pred             EE
Confidence            54

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=1.8e-05  Score=57.25  Aligned_cols=181  Identities=9%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             CCCCcceEEEEEeCC----CcEEEEeCCCCceeeEEec---cCCeeEEEEcCCCCcEEEEecC------CCEEEEEecCC
Q psy11351          2 ASGDPIKVLRVIGND----DHVISHDMASGDPIDFYLH---ERPVYGLSVDPSQDAIFASACD------DGRVLLFDTRS   68 (224)
Q Consensus         2 a~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~   68 (224)
                      ++..+|+++++...+    +.+...+..+........+   ....+.+.+.++| .+.++...      .+.+..++...
T Consensus        88 a~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1          88 KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDF  166 (319)
T ss_dssp             EECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             EECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEeccc
Confidence            345556655554322    2344444444444443322   3457889999999 66666432      23455555433


Q ss_pred             cccceeeccCCcCeEEEEEcCCCCC-eEEEecCCCcEEEEecCCCceeeE--------eecCCCceeEEEEcCCCCeEee
Q psy11351         69 REEATELAVNSGPFHAVMFNPVEAR-LVATANSKDGIALYDTRKPKEVLM--------QYGSCESCMSIRFNKAGTQLLG  139 (224)
Q Consensus        69 ~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~  139 (224)
                      + .+..+...-..-+.++|+| +++ ++++-+..+.|..||+........        ..........++++++|++.++
T Consensus       167 ~-~~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va  244 (319)
T d2dg1a1         167 R-TVTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA  244 (319)
T ss_dssp             C-CEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred             c-eeEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE
Confidence            2 2333322233457899999 665 556667788999999864321111        1112234568999999998888


Q ss_pred             eecCCCcEEEECCCCCcceecccCCc--ccceeeeEEEEeCCCCeEEEE
Q psy11351        140 LRRRLPPVLYNTRSSSPVAQFDHEGY--YNSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       140 ~~~d~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s  186 (224)
                      ....+.|.+||. .++.+..+..+..  -.......++|.|....++++
T Consensus       245 ~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         245 MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             EcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            888899999995 5887777742221  111123357777743444444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=2.5e-05  Score=55.85  Aligned_cols=177  Identities=12%  Similarity=0.086  Sum_probs=111.2

Q ss_pred             CCCcceEEEEEeCCCcEEEEeCCCCceeeEEe-----ccCCeeEEEEcCCCCcEEEEecC----CCEEEEEecCCcccce
Q psy11351          3 SGDPIKVLRVIGNDDHVISHDMASGDPIDFYL-----HERPVYGLSVDPSQDAIFASACD----DGRVLLFDTRSREEAT   73 (224)
Q Consensus         3 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~   73 (224)
                      ...++.++++ +.+ .+.++|..+++......     ....++++.+.|+| ++.++...    .+.-.+|.+..++...
T Consensus        66 ~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~  142 (295)
T d2ghsa1          66 KISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTK  142 (295)
T ss_dssp             EEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEE
T ss_pred             EecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEE
Confidence            3445666554 444 59999999988765542     12358899999999 56555322    2344566666665433


Q ss_pred             eeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc-----eeeE---eecCCCceeEEEEcCCCCeEeeeecCCC
Q psy11351         74 ELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPK-----EVLM---QYGSCESCMSIRFNKAGTQLLGLRRRLP  145 (224)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~  145 (224)
                      .... -..-+.++|++++..++++-+..+.|..|++....     ....   .....+....+++.++|++.++.-..+.
T Consensus       143 ~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~  221 (295)
T d2ghsa1         143 LFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA  221 (295)
T ss_dssp             EEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred             Eeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc
Confidence            3322 33457899999444466677778889999875321     1111   1234556788999999998877767788


Q ss_pred             cEEEECCCCCcceecccCCcccceeeeEEEEeCCCC-eEEEEcC
Q psy11351        146 PVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQD-EYVVSGS  188 (224)
Q Consensus       146 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~  188 (224)
                      |..||. .++.+..+..+..    ..+.++|-..+. .+++|..
T Consensus       222 V~~~dp-~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         222 VDRYDT-DGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEECT-TCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEB
T ss_pred             eEEecC-CCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEEC
Confidence            999995 5788877744321    134577864343 4555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.47  E-value=6.4e-05  Score=52.62  Aligned_cols=89  Identities=12%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEe-c---CC--CEEEEEecCCcccceeec----
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASA-C---DD--GRVLLFDTRSREEATELA----   76 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~---~d--~~i~iwd~~~~~~~~~~~----   76 (224)
                      |+.++-.+ +|.|.+.|+.+++...+..+.+.+...+|+||| +.|+-. .   .+  ..|.+++...++......    
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~   89 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK   89 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence            66776554 567999999999987776777888999999999 566533 2   22  247777777666433211    


Q ss_pred             --cCCcCeEEEEEcCCCCCeEEEe
Q psy11351         77 --VNSGPFHAVMFNPVEARLVATA   98 (224)
Q Consensus        77 --~~~~~i~~~~~~~~~~~~l~~~   98 (224)
                        ..........|+| +++.++..
T Consensus        90 ~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          90 STGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             EETTEECSEEEEECT-TCCEEEEE
T ss_pred             ccCccccccccccCC-CCCEEEEE
Confidence              1122456788999 77766654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=6.4e-05  Score=52.42  Aligned_cols=177  Identities=10%  Similarity=0.052  Sum_probs=100.4

Q ss_pred             cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEE-ecCCC--EEEEEecCCcccceeeccCCcCeEEEEEcCCCCCe
Q psy11351         18 HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFAS-ACDDG--RVLLFDTRSREEATELAVNSGPFHAVMFNPVEARL   94 (224)
Q Consensus        18 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   94 (224)
                      .|.|.|...........+...+..-+|+||| +.||- ....+  .+.+.+...+.. ..+..+........|+| ++..
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP-DGSK   96 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT-TSSE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCC-CEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecC-CCCe
Confidence            5888898877777777778889999999999 56654 33333  466666665543 34455667788999999 6666


Q ss_pred             EEEec-CCCcEEEEecCCC-ceeeEeecCCCceeEEEEcCCCCeEeee-ecCCC--cEEEECCCCCcceecccCCcccce
Q psy11351         95 VATAN-SKDGIALYDTRKP-KEVLMQYGSCESCMSIRFNKAGTQLLGL-RRRLP--PVLYNTRSSSPVAQFDHEGYYNSC  169 (224)
Q Consensus        95 l~~~~-~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--v~v~d~~~~~~~~~~~~~~~~~~~  169 (224)
                      ++... .++...++..... .................+++++..++.. ..++.  +...++..+..........     
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~-----  171 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS-----  171 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS-----
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccc-----
Confidence            65543 3333333322221 1223333344455566777777755544 34444  4455555543332222222     


Q ss_pred             eeeEEEEeCCCCeEEEEcC-CCC--eEEEEeCCCCCe
Q psy11351        170 TMKSCCFAGTQDEYVVSGS-DDF--VLYMWRVPRDDI  203 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l~s~~-~d~--~v~iw~~~~~~~  203 (224)
                      ......|+| ++..++..+ .++  .+.+.+...+..
T Consensus       172 ~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         172 QNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             EEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccccccccc-ccceeEEEeecCCceeeeEeecccccc
Confidence            123357888 566655443 334  444455555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.39  E-value=0.00012  Score=52.21  Aligned_cols=185  Identities=12%  Similarity=0.036  Sum_probs=114.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec--c--CCcC
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA--V--NSGP   81 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~--~~~~   81 (224)
                      .++++.+=-..++|.-||.++++.. .+.....+.++++.+++ .++++ +.+ -+.++|..+++......  .  ....
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeeeecCCCccc
Confidence            4455555556778888888887653 44556788899999887 56655 444 58889998887433221  1  1235


Q ss_pred             eEEEEEcCCCCCeEEEecC----CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeee-ecCCCcEEEECCCCC-
Q psy11351         82 FHAVMFNPVEARLVATANS----KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL-RRRLPPVLYNTRSSS-  155 (224)
Q Consensus        82 i~~~~~~~~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~v~d~~~~~-  155 (224)
                      ++.+.+.| ++++.++...    .+.-.+|.+..++. ......-.....++|+++++.++.+ +..+.|+.|++.... 
T Consensus       105 ~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         105 SNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             ceeeEECC-CCCEEEEeccccccccceeEeeecCCcE-EEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence            78999999 7777766432    23456676666643 3333333445789999999876655 456778888874321 


Q ss_pred             -c---ceec-c---cCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        156 -P---VAQF-D---HEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       156 -~---~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       .   ...+ .   ..+...     .+++.. ++++.++.-..+.|..||. .++.
T Consensus       183 ~~~~~~~~~~~~~~~~g~pd-----G~~vD~-~GnlWva~~~~g~V~~~dp-~G~~  231 (295)
T d2ghsa1         183 LPTGKAEVFIDSTGIKGGMD-----GSVCDA-EGHIWNARWGEGAVDRYDT-DGNH  231 (295)
T ss_dssp             CBSSCCEEEEECTTSSSEEE-----EEEECT-TSCEEEEEETTTEEEEECT-TCCE
T ss_pred             ccccceEEEeccCccccccc-----ceEEcC-CCCEEeeeeCCCceEEecC-CCcE
Confidence             1   1111 1   122222     344444 6777777666788999995 4554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=0.00026  Score=49.49  Aligned_cols=190  Identities=10%  Similarity=0.050  Sum_probs=115.2

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEE
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVM   86 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~   86 (224)
                      .++.+-..++.|+..++......... .....+.++++...+.++..+-...+.|.+.++........+.........++
T Consensus        49 ~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~  128 (263)
T d1npea_          49 VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIV  128 (263)
T ss_dssp             EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEE
Confidence            34444445677777777765554444 23356889999876646666777788999999875543333333345688999


Q ss_pred             EcCCCCCeEEEecCCCc--EEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceecccC
Q psy11351         87 FNPVEARLVATANSKDG--IALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQFDHE  163 (224)
Q Consensus        87 ~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~~~  163 (224)
                      ++|..+.++.+-...+.  |.--++............-.....+++++.++.|+.+. ..+.|...++........+...
T Consensus       129 vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~  208 (263)
T d1npea_         129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL  208 (263)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC
T ss_pred             EecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC
Confidence            99955555555433233  44445543322222223335668999998888776664 4567888888654433222211


Q ss_pred             CcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        164 GYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .....     +++.  ++.++.+-...+.|...|..+++..
T Consensus       209 ~~P~~-----lav~--~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         209 QYPFA-----VTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             CSEEE-----EEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcEE-----EEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence            11122     3333  4666677667889999999888764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.6e-05  Score=56.83  Aligned_cols=154  Identities=8%  Similarity=0.044  Sum_probs=92.3

Q ss_pred             CCcceEEEEEe---------CCCcEEEEeCCCCceeeEE---eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc
Q psy11351          4 GDPIKVLRVIG---------NDDHVISHDMASGDPIDFY---LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE   71 (224)
Q Consensus         4 ~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~   71 (224)
                      +.++++++...         ..+.+.++|+.+++.....   .....+....|+|+| +.+|-.. ++.|.+.+...+..
T Consensus        69 SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~  146 (465)
T d1xfda1          69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQA  146 (465)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCC
T ss_pred             CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCce
Confidence            55677766653         3567899999988765543   234456678999999 5665554 57888888876654


Q ss_pred             ceeec-cCCc-----------------CeEEEEEcCCCCCeEEEecC-CCcE----------------------------
Q psy11351         72 ATELA-VNSG-----------------PFHAVMFNPVEARLVATANS-KDGI----------------------------  104 (224)
Q Consensus        72 ~~~~~-~~~~-----------------~i~~~~~~~~~~~~l~~~~~-dg~v----------------------------  104 (224)
                      ++... +...                 .-..+.|+| +++.||.... +..|                            
T Consensus       147 ~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~n  225 (465)
T d1xfda1         147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (465)
T ss_dssp             EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             EEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCC
Confidence            43322 1111                 125778999 8888876532 2223                            


Q ss_pred             -----EEEecCCCceeeEee------cCCCceeEEEEcCCCCeEeeeec-C---CCcEEEECCCCCcceec
Q psy11351        105 -----ALYDTRKPKEVLMQY------GSCESCMSIRFNKAGTQLLGLRR-R---LPPVLYNTRSSSPVAQF  160 (224)
Q Consensus       105 -----~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~-d---~~v~v~d~~~~~~~~~~  160 (224)
                           .++|+..+.......      .....+..+.|+|+++.++.... +   ..+.++|..+++....+
T Consensus       226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence                 334443322111111      11224677899999886665432 2   24788899888765554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.12  E-value=0.00051  Score=53.55  Aligned_cols=141  Identities=6%  Similarity=-0.140  Sum_probs=85.2

Q ss_pred             CCEEEEEecCCcccceeeccCCc----------C-eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecC-----
Q psy11351         58 DGRVLLFDTRSREEATELAVNSG----------P-FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGS-----  121 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~~~~~~~----------~-i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-----  121 (224)
                      ...+.-.|.++++.+..++....          + ...+.........++.++.+|.+.++|..+++.+......     
T Consensus       271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~  350 (571)
T d2ad6a1         271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence            35677889999987766653221          1 1222222211135677889999999999988765321100     


Q ss_pred             ---------------------------------CC-ceeEEEEcCCCCeEeeeecC------------------------
Q psy11351        122 ---------------------------------CE-SCMSIRFNKAGTQLLGLRRR------------------------  143 (224)
Q Consensus       122 ---------------------------------~~-~v~~~~~~~~~~~l~~~~~d------------------------  143 (224)
                                                       .. .-...+++|+...+++...+                        
T Consensus       351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (571)
T d2ad6a1         351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence                                             00 00125667766655543322                        


Q ss_pred             -------------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 -------------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 -------------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                   |.+.-+|+.+++.+.+........+-.+..      .+.++++|+.|+.++.+|.++|+++
T Consensus       431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T------agglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT------KGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEe------cCCEEEEECCCCeEEEEECCCCcEE
Confidence                         346677777787776664333333322322      4677888999999999999999884

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=0.0012  Score=48.87  Aligned_cols=190  Identities=12%  Similarity=0.035  Sum_probs=117.1

Q ss_pred             cceEEEEEe-CCCcEEEEeCCCCceeeEE--eccCCeeEEEEcCCCC-cEEEEecCC------------------CEEEE
Q psy11351          6 PIKVLRVIG-NDDHVISHDMASGDPIDFY--LHERPVYGLSVDPSQD-AIFASACDD------------------GRVLL   63 (224)
Q Consensus         6 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-~~l~s~~~d------------------~~i~i   63 (224)
                      +|+++.... .+..|-+.|+.+.+..+..  .....+..+...++.. .+++.++++                  +.+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            678777666 6788999999999986655  4556777777654331 466666553                  33567


Q ss_pred             EecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCC--------------------------------------cEE
Q psy11351         64 FDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKD--------------------------------------GIA  105 (224)
Q Consensus        64 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------------------------------------~v~  105 (224)
                      .|..+.+....+.. .+....+.+++ +++++++.+.+.                                      .+.
T Consensus       178 ID~~tm~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            88887776555543 23466889999 777777765331                                      123


Q ss_pred             EEecCCC--ceeeEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcc--------eecccCCcccceeeeEE
Q psy11351        106 LYDTRKP--KEVLMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPV--------AQFDHEGYYNSCTMKSC  174 (224)
Q Consensus       106 i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~--------~~~~~~~~~~~~~~~~~  174 (224)
                      +-|.++.  .....+..-......+..+|||+++++++ .+.++.++|++.-...        ... ....-..+.-...
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~-~~e~elglgPLht  334 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV-VAEPELGLGPLHT  334 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE-EECCBCCSCEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE-EeecccCcCcccc
Confidence            3333321  11111111223346789999999988865 5788999998642111        111 0111111222234


Q ss_pred             EEeCCCCeEEEEcCCCCeEEEEeCC
Q psy11351        175 CFAGTQDEYVVSGSDDFVLYMWRVP  199 (224)
Q Consensus       175 ~~~~~~~~~l~s~~~d~~v~iw~~~  199 (224)
                      .|.. .+.-..|---|.+|.-|++.
T Consensus       335 ~fd~-~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         335 AFDG-RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EECT-TSEEEEEETTTTEEEEEEHH
T ss_pred             ccCC-CceEEEEeeccceEEEEecc
Confidence            6766 57777787889999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.80  E-value=0.0034  Score=48.69  Aligned_cols=140  Identities=10%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             CEEEEEecCCcccceeeccCCcC-----------eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCC-----
Q psy11351         59 GRVLLFDTRSREEATELAVNSGP-----------FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSC-----  122 (224)
Q Consensus        59 ~~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-----  122 (224)
                      ..|.-.|+++++....++.....           ...+.........++.++.+|.+.++|..+++.+.......     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            46777788888876655432211           12233322122467778899999999999887654332100     


Q ss_pred             -------------------------------CceeEEEEcCCCCeEeeeecC----------------------------
Q psy11351        123 -------------------------------ESCMSIRFNKAGTQLLGLRRR----------------------------  143 (224)
Q Consensus       123 -------------------------------~~v~~~~~~~~~~~l~~~~~d----------------------------  143 (224)
                                                     ..-...+++|+...++....+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                           000135566766655543321                            


Q ss_pred             --------CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 --------LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 --------~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                              +.+.-+|+.+++.+.++........-.+..      .+.++++|+.||.++.+|..+|+++
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T------agglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST------AGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEE------CCCEEEEECCCCcEEEEECCCCcEe
Confidence                    346677888887777765444433323333      5678888999999999999999984

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=0.0023  Score=44.53  Aligned_cols=192  Identities=7%  Similarity=0.027  Sum_probs=114.7

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCcee-----e-EEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCc
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPI-----D-FYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSG   80 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~-----~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~   80 (224)
                      |.+|+-+. .+.|+-.+++.....     . ...+...+..++|.+.+..++.+-..++.|+..++........+.....
T Consensus         1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~   79 (263)
T d1npea_           1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (263)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence            34455443 357877777654321     1 1134456888999987745555656778999888876654444433335


Q ss_pred             CeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecC-CCcEEE--ECCCCCcc
Q psy11351         81 PFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRR-LPPVLY--NTRSSSPV  157 (224)
Q Consensus        81 ~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~v~--d~~~~~~~  157 (224)
                      ....++++..++++..+-...+.|.+.++...............+..++++|...+++..... +..+|+  ++..... 
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-  158 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-  158 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-
Confidence            678999987455566666677899999987654333233334678899999988777755332 233454  4443322 


Q ss_pred             eecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        158 AQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..+...+ +..  ...+++.+.++.++.+-...+.|...++.....
T Consensus       159 ~~i~~~~-~~~--P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~  201 (263)
T d1npea_         159 RILAQDN-LGL--PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (263)
T ss_dssp             EEEECTT-CSC--EEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             eeeeeec-ccc--cceEEEeecCcEEEEEeCCCCEEEEEECCCCCe
Confidence            2221111 110  123555554555556656678888888876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.003  Score=43.97  Aligned_cols=189  Identities=8%  Similarity=-0.030  Sum_probs=115.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcc----cceeeccCCcCeEE
Q psy11351          9 VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSRE----EATELAVNSGPFHA   84 (224)
Q Consensus         9 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~   84 (224)
                      +|+.+. ...|+..++.+.+..........+..++|++....++.+=..++.|.-.++....    ....+......+..
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEEC-CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            344443 3469999998877666665666788999998774455555567778777664322    11122222345667


Q ss_pred             EEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec--CCCcEEEECCCCCcceeccc
Q psy11351         85 VMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR--RLPPVLYNTRSSSPVAQFDH  162 (224)
Q Consensus        85 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~v~d~~~~~~~~~~~~  162 (224)
                      +++.+.++++..+-...+.|.+.++..................++++|...+|+....  .+.|.-.++...........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            8888756666676677788999999866554445555667889999997777666543  33455555543332222221


Q ss_pred             -CCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        163 -EGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       163 -~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                       -...+     .+++.+.++.+..+-...+.|...++.....
T Consensus       162 ~~~~p~-----gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         162 NIQWPN-----GITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             SCSCEE-----EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccceee-----EEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence             12222     3555554555666666778888888866543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.64  E-value=0.0024  Score=49.50  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCC
Q psy11351        102 DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQD  181 (224)
Q Consensus       102 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (224)
                      |.+.-+|+.+++...+... ..+...-.+.-.+.+++.++.|+.++.+|.++|+.+.++.....+...   ++.|.. ++
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~---P~ty~~-dG  512 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA---PMTFEL-AG  512 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC---CEEEEE-TT
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcccc---CEEEEE-CC
Confidence            4577788888876655442 112222223335677888999999999999999999988544443322   234333 55


Q ss_pred             -eEEEE
Q psy11351        182 -EYVVS  186 (224)
Q Consensus       182 -~~l~s  186 (224)
                       +||+.
T Consensus       513 kqyv~v  518 (560)
T d1kv9a2         513 RQYVAI  518 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             45543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=0.0046  Score=43.43  Aligned_cols=192  Identities=8%  Similarity=0.023  Sum_probs=116.3

Q ss_pred             Ccce-EEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCc-ccceeeccCC---
Q psy11351          5 DPIK-VLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSR-EEATELAVNS---   79 (224)
Q Consensus         5 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~---   79 (224)
                      +|.+ .+|.-+ ..++.++|+++.+.++.+.....|.-=.|-.+.  .|+-.. +..|+-|+++.. .+.+.+..|.   
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhhccccc
Confidence            4444 444443 668999999999999988888888888888654  565555 358999999543 3555555443   


Q ss_pred             -cCeEEEEEcCCCCCeEEEec-------CCCcEEEEecCCCceeeEeecCCCceeEEEEcCCC---CeEeee---ecCCC
Q psy11351         80 -GPFHAVMFNPVEARLVATAN-------SKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAG---TQLLGL---RRRLP  145 (224)
Q Consensus        80 -~~i~~~~~~~~~~~~l~~~~-------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~---~~d~~  145 (224)
                       ..|-.-..++ +.++++..+       -.|.+.+|..+.. ....+.+|.+.-..+.+.-+.   ..++.+   ...++
T Consensus       147 ~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k  224 (327)
T d1utca2         147 GCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  224 (327)
T ss_dssp             TCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEE
T ss_pred             CceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcE
Confidence             3566667777 666665432       2366889998765 445555554443333332111   122222   22356


Q ss_pred             cEEEECCCCCc-cee--------cccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        146 PVLYNTRSSSP-VAQ--------FDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       146 v~v~d~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      +++.++..... -..        +-.....+...+ .+..++ ....+..-+.-|.+++||+.++.+.
T Consensus       225 LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv-amqvs~-kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         225 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISE-KHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE-EEEEET-TTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEEcCCCccCCCCCcceeEEEECCccccCCcEE-EEEeec-cCCEEEEEecCcEEEEEEcccccEE
Confidence            88888755211 111        112222333222 244555 4566777778999999999999885

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=0.0026  Score=49.49  Aligned_cols=80  Identities=9%  Similarity=0.032  Sum_probs=48.3

Q ss_pred             CcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCC
Q psy11351        102 DGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQD  181 (224)
Q Consensus       102 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (224)
                      |.+.-+|+++++...+..... +..+-.+.-.+..+++++.|+.++.+|.++|+.+.++.....+..   .++.|.. ++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a---~P~ty~~-dG  518 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG---SPMTYSF-KG  518 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEEEEE-TT
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee---cceEEEE-CC
Confidence            456677777776655443211 111111222466778899999999999999999998855544443   2244433 45


Q ss_pred             -eEEEE
Q psy11351        182 -EYVVS  186 (224)
Q Consensus       182 -~~l~s  186 (224)
                       +|+++
T Consensus       519 kqYi~v  524 (571)
T d2ad6a1         519 KQYIGS  524 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             45544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.54  E-value=0.011  Score=45.93  Aligned_cols=139  Identities=11%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             EEEEEecCCcccceeeccCCc---------C--eEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCC------
Q psy11351         60 RVLLFDTRSREEATELAVNSG---------P--FHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSC------  122 (224)
Q Consensus        60 ~i~iwd~~~~~~~~~~~~~~~---------~--i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------  122 (224)
                      .|.-.|.++++....++....         +  +..+.........++.++.+|.+.++|..+++.+.......      
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            566677777776554432111         1  12222222112467778899999999999887654332100      


Q ss_pred             -----------------------------CceeEEEEcCCCCeEeeeecCC-----------------------------
Q psy11351        123 -----------------------------ESCMSIRFNKAGTQLLGLRRRL-----------------------------  144 (224)
Q Consensus       123 -----------------------------~~v~~~~~~~~~~~l~~~~~d~-----------------------------  144 (224)
                                                   ..-..++++|+...++....+.                             
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                         0012346777766666543332                             


Q ss_pred             --------------CcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        145 --------------PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       145 --------------~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                                    .+.-||+.+++.+.+.........-.+..      .+.++++|+.||.++.+|..+|+++
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst------agglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT------AGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE------cCCEEEEECCCCeEEEEECCCCcEe
Confidence                          24445666666555553333222222222      5678888999999999999999984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.50  E-value=0.0054  Score=44.69  Aligned_cols=147  Identities=16%  Similarity=0.111  Sum_probs=86.9

Q ss_pred             CcceEEEEEeCCC-----------cEEEEeCCCCceeeEE----eccCCeeEEEEcCCCCcEEEEecCC-CEEEEEecCC
Q psy11351          5 DPIKVLRVIGNDD-----------HVISHDMASGDPIDFY----LHERPVYGLSVDPSQDAIFASACDD-GRVLLFDTRS   68 (224)
Q Consensus         5 ~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~   68 (224)
                      .++++++.|+.+.           .+.+||..+++.....    .+.......++.+++ .+++.|+.+ ..+.+||..+
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGG
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEecCcc
Confidence            4578888887531           3779999987654321    344445567788998 788887655 6899999987


Q ss_pred             cccce--eeccCCcCeEEEEEcCCCCCeEEEecCC------CcEEEEecCCCceeeEeec----------CC-----Cce
Q psy11351         69 REEAT--ELAVNSGPFHAVMFNPVEARLVATANSK------DGIALYDTRKPKEVLMQYG----------SC-----ESC  125 (224)
Q Consensus        69 ~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~----------~~-----~~v  125 (224)
                      ..-..  .+... ..-...+..+ ++++++.|+.+      ..+.+||..+.+-. .+..          +.     ..-
T Consensus       108 ~~w~~~~~~~~~-r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~  184 (387)
T d1k3ia3         108 DSWIPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYRSDNH  184 (387)
T ss_dssp             TEEEECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGTTTCS
T ss_pred             Cccccccccccc-ccccceeeec-CCceeeeccccccccccceeeeecCCCCcee-ecCCCcccccccccccceeeccce
Confidence            65321  12211 1234556666 77888887643      35889998876421 1110          00     001


Q ss_pred             eEEEEcCCCCeEeeeecCCCcEEEECCCCC
Q psy11351        126 MSIRFNKAGTQLLGLRRRLPPVLYNTRSSS  155 (224)
Q Consensus       126 ~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~  155 (224)
                      ..+...++|+.+..+..++.+.+++..+..
T Consensus       185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         185 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             CCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            112233456666666666666667666553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.47  E-value=0.0007  Score=47.07  Aligned_cols=96  Identities=13%  Similarity=0.065  Sum_probs=60.1

Q ss_pred             EcCCC--CCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec-CC-----CcEEEECCCCCcce
Q psy11351         87 FNPVE--ARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR-RL-----PPVLYNTRSSSPVA  158 (224)
Q Consensus        87 ~~~~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~-----~v~v~d~~~~~~~~  158 (224)
                      .+| +  ++.++-. .++.|.++|+..++ ...+..+.+.....+|||||+.|+.... ++     .|.+++..+++...
T Consensus         6 ~sP-di~G~~v~f~-~~~dl~~~d~~~g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNP-DIHGDRIIFV-CCDDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEE-EEETTEEEEE-ETTEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCC-CCCCCEEEEE-eCCcEEEEECCCCC-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            456 5  5666654 34578888998775 4566777788899999999999886542 22     36777777776544


Q ss_pred             ecccCCcc--cceeeeEEEEeCCCCeEEEE
Q psy11351        159 QFDHEGYY--NSCTMKSCCFAGTQDEYVVS  186 (224)
Q Consensus       159 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~s  186 (224)
                      ........  .........|+| +++.|+.
T Consensus        83 lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~  111 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDP-DGNLIIS  111 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECT-TCCEEEE
T ss_pred             eeecCCCccCccccccccccCC-CCCEEEE
Confidence            33221111  111223467888 5776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.45  E-value=0.011  Score=46.00  Aligned_cols=55  Identities=9%  Similarity=-0.008  Sum_probs=41.3

Q ss_pred             CCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        144 LPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       144 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      |.+.-+|+.+++.+.+.....+...-.+..      .+.++++|+.||.++.+|..+|+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lst------agglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------AGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEE------TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEE------cCCeEEEeCCCCeEEEEECCCCcEe
Confidence            567888899998887775444443323333      5778888999999999999999984

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.41  E-value=0.0086  Score=46.49  Aligned_cols=64  Identities=9%  Similarity=-0.030  Sum_probs=41.9

Q ss_pred             cEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCccc
Q psy11351        103 GIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYN  167 (224)
Q Consensus       103 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~  167 (224)
                      .+.-||+.+++........ .+...=..+-.+..+++++.|+.++.+|.++|+.+.++.....+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~  521 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV  521 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc
Confidence            4666777777655544321 111111223357788889999999999999999999985444433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.36  E-value=0.019  Score=44.67  Aligned_cols=54  Identities=17%  Similarity=0.004  Sum_probs=38.5

Q ss_pred             CcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        145 PPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       145 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      .+.-||+.+++.+....+......-.+..      .+.+++.|+.||.++.+|.++|+++
T Consensus       454 ~l~A~D~~TG~~~W~~~~~~~~~gg~lsT------agglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         454 QIKAYNAITGDYKWEKMERFAVWGGTMAT------AGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEE------TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eEEEEeCCCCceecccCCCCCCccceeEe------cCCEEEEECCCCeEEEEECCCCcEe
Confidence            46677777777766654444433333333      5678888999999999999999984

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.24  E-value=0.0068  Score=47.16  Aligned_cols=81  Identities=11%  Similarity=0.020  Sum_probs=53.2

Q ss_pred             CCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCC
Q psy11351        101 KDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQ  180 (224)
Q Consensus       101 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (224)
                      .|.+.-+|+.+++...+.... .++..-.++..+..+++++.|+.++.+|.++|+.+.++.....+...   ++.|.. +
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~---P~ty~~-~  539 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP---PITWEQ-D  539 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC---CEEEEE-T
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcccc---CEEEEE-C
Confidence            367888899988776665532 22222223446778888999999999999999999998544443332   244443 5


Q ss_pred             C-eEEEE
Q psy11351        181 D-EYVVS  186 (224)
Q Consensus       181 ~-~~l~s  186 (224)
                      + +|++.
T Consensus       540 G~qYv~i  546 (582)
T d1flga_         540 GEQYLGV  546 (582)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEE
Confidence            5 55443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.017  Score=40.01  Aligned_cols=162  Identities=13%  Similarity=0.053  Sum_probs=100.5

Q ss_pred             CCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEe-cCCCcEEEEecCCCcee
Q psy11351         37 RPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATA-NSKDGIALYDTRKPKEV  115 (224)
Q Consensus        37 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~  115 (224)
                      ..+..+++.+.+.++..+-...+.|.+.++........+.........++++|..+.++.+. +..+.|.-.++.... .
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-e
Confidence            45677888876657777777888999999876654444444455678999999455555543 233456666665433 3


Q ss_pred             eEee-cCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeE
Q psy11351        116 LMQY-GSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVL  193 (224)
Q Consensus       116 ~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v  193 (224)
                      ..+. ..-.....+++++.++.|+.+. ..+.|...++.................  ...++..  ++.++.+-..++.|
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~--p~~lav~--~~~ly~td~~~~~I  231 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH--PFSLAVF--EDKVFWTDIINEAI  231 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS--EEEEEEE--TTEEEEEETTTTEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccc--cEEEEEE--CCEEEEEECCCCeE
Confidence            3333 3345678999999888777764 456788888865443322211111111  1113332  45666676678889


Q ss_pred             EEEeCCCCCe
Q psy11351        194 YMWRVPRDDI  203 (224)
Q Consensus       194 ~iw~~~~~~~  203 (224)
                      +..+..+++.
T Consensus       232 ~~~~~~~g~~  241 (266)
T d1ijqa1         232 FSANRLTGSD  241 (266)
T ss_dssp             EEEETTTCCC
T ss_pred             EEEECCCCcc
Confidence            8888887764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.11  E-value=0.028  Score=41.51  Aligned_cols=132  Identities=10%  Similarity=-0.011  Sum_probs=83.4

Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEEe-----------cc-----------------------------CCee--EEEEc--
Q psy11351         10 LRVIGNDDHVISHDMASGDPIDFYL-----------HE-----------------------------RPVY--GLSVD--   45 (224)
Q Consensus        10 l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~-----------------------------~~v~--~~~~~--   45 (224)
                      +.+|+..|.|+|+-+.+++.++.+.           .+                             +...  .+.+.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            6789999999999998876554331           00                             0111  23333  


Q ss_pred             -CCCCcEEEEecCCCEEEEEecCCcccceeec-cCCcCeEEEEEcCC-CCCeEEEecCC------------------CcE
Q psy11351         46 -PSQDAIFASACDDGRVLLFDTRSREEATELA-VNSGPFHAVMFNPV-EARLVATANSK------------------DGI  104 (224)
Q Consensus        46 -~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~l~~~~~d------------------g~v  104 (224)
                       +||..+++.-..+..|.+.|+++.+..+.+. .....+..++..+. +..+++.++..                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence             2563445566688999999999888655432 22345666665431 44566665542                  225


Q ss_pred             EEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeec
Q psy11351        105 ALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRR  142 (224)
Q Consensus       105 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  142 (224)
                      ..+|..+.+...+..- ......+.++++|+++++.+.
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEES
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEec
Confidence            6788888766555542 234567899999999988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.08  E-value=0.04  Score=42.86  Aligned_cols=195  Identities=10%  Similarity=0.088  Sum_probs=113.9

Q ss_pred             ceEEEEEeCCCcEEEEeC-CCCceeeEEeccC------------CeeEEEEcCCC---CcEEEEecCCCEEEEEecCCcc
Q psy11351          7 IKVLRVIGNDDHVISHDM-ASGDPIDFYLHER------------PVYGLSVDPSQ---DAIFASACDDGRVLLFDTRSRE   70 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~   70 (224)
                      +.++++++.++.+...|. ++|+.+..+.+..            .-+.+++.++.   +.+++.++.|+.|.-.|.++++
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            444555566778888887 5788887663211            11345554332   2468889999999999999999


Q ss_pred             cceeeccCC---c-CeE-EEEEcCCCCCeEEEec------CCCcEEEEecCCCceeeEeecCC-----------------
Q psy11351         71 EATELAVNS---G-PFH-AVMFNPVEARLVATAN------SKDGIALYDTRKPKEVLMQYGSC-----------------  122 (224)
Q Consensus        71 ~~~~~~~~~---~-~i~-~~~~~~~~~~~l~~~~------~dg~v~i~d~~~~~~~~~~~~~~-----------------  122 (224)
                      .+..+....   . .++ .-.+.  + ..++.+.      ..|.|+-+|+++++.+..+....                 
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v~--~-~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  219 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             eeccccccccccccccccCCcEE--C-CeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence            877663211   1 111 01111  2 3444443      34889999999998877654210                 


Q ss_pred             --------------------Cc-eeEEEEcCCCCeEeeeecC----------------CCcEEEECCCCCcceecc---c
Q psy11351        123 --------------------ES-CMSIRFNKAGTQLLGLRRR----------------LPPVLYNTRSSSPVAQFD---H  162 (224)
Q Consensus       123 --------------------~~-v~~~~~~~~~~~l~~~~~d----------------~~v~v~d~~~~~~~~~~~---~  162 (224)
                                          .. -..+++.+....++.+..+                ..+.-.|+++++.+..+.   |
T Consensus       220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~  299 (596)
T d1w6sa_         220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (596)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceec
Confidence                                11 1234566666655554322                236678899999877662   2


Q ss_pred             CCcccceeeeEEEEe-C-CCC---eEEEEcCCCCeEEEEeCCCCCeE
Q psy11351        163 EGYYNSCTMKSCCFA-G-TQD---EYVVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       163 ~~~~~~~~~~~~~~~-~-~~~---~~l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ...-......+.... + .++   ..++....+|.++++|..+|+..
T Consensus       300 D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence            221111111111111 1 122   46888999999999999999886

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.98  E-value=0.028  Score=40.69  Aligned_cols=157  Identities=9%  Similarity=0.029  Sum_probs=89.3

Q ss_pred             EcCCCCcEEEEecCC-----------CEEEEEecCCccccee--e-ccCCcCeEEEEEcCCCCCeEEEecCC-CcEEEEe
Q psy11351         44 VDPSQDAIFASACDD-----------GRVLLFDTRSREEATE--L-AVNSGPFHAVMFNPVEARLVATANSK-DGIALYD  108 (224)
Q Consensus        44 ~~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~~l~~~~~d-g~v~i~d  108 (224)
                      ...++ ++++.|+.+           ..+.+||..+++-...  . ..+.......++.+ ++.+++.|+.+ ..+.+||
T Consensus        27 ~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          27 EPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             ETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEE
T ss_pred             EeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEec
Confidence            34455 677766642           1477899988764321  1 22333344667778 88888888655 5799999


Q ss_pred             cCCCceeeEeec--CCCceeEEEEcCCCCeEeeeecC------CCcEEEECCCCCcceec---------ccCCcccceee
Q psy11351        109 TRKPKEVLMQYG--SCESCMSIRFNKAGTQLLGLRRR------LPPVLYNTRSSSPVAQF---------DHEGYYNSCTM  171 (224)
Q Consensus       109 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~  171 (224)
                      ..+..-. ....  ....-..++..++|+.++.++.+      ..+.+||+.+.+-...-         ...........
T Consensus       105 ~~~~~w~-~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  183 (387)
T d1k3ia3         105 SSSDSWI-PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  183 (387)
T ss_dssp             GGGTEEE-ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             CccCccc-ccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccc
Confidence            9876432 2211  22223456777899988887643      35889998765321110         00000000000


Q ss_pred             eEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        172 KSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ....+...++..++.+...+.+.+++..+...
T Consensus       184 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         184 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            11122222577777787788888888776643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.12  Score=37.53  Aligned_cols=132  Identities=8%  Similarity=0.058  Sum_probs=79.5

Q ss_pred             CCCCcceEEEEEeCCCcEEEEeCCC----------CceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCccc
Q psy11351          2 ASGDPIKVLRVIGNDDHVISHDMAS----------GDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREE   71 (224)
Q Consensus         2 a~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~   71 (224)
                      |+.+.-.++++|+.++ ++|..++.          +........-..|..++|+-+   .|+.. .++.+..++...-..
T Consensus        43 AVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~~  117 (381)
T d1xipa_          43 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD---QVLVS-TRNALYSLDLEELSE  117 (381)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT---EEEEE-ESSEEEEEESSSTTC
T ss_pred             EEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC---EEEEE-eCCCEEEEEeecccc
Confidence            4445455777777774 66766321          111111112236888999743   34443 345777788766443


Q ss_pred             ceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEee-----cCCCceeEEEEcCCCCeEeeee
Q psy11351         72 ATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQY-----GSCESCMSIRFNKAGTQLLGLR  141 (224)
Q Consensus        72 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~  141 (224)
                      ......-..++..+.++| .  .++....++.+.++++...+......     .-.+.+.++.|++.|..++++.
T Consensus       118 ~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         118 FRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            333334456788888877 3  45555578899999998775322211     1346688888988888887764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.33  E-value=0.29  Score=34.91  Aligned_cols=152  Identities=9%  Similarity=-0.003  Sum_probs=84.1

Q ss_pred             CCCCcceEEEEEeC------------CCcEEEEeCCCCceeeEE----ec-----cCCeeEEEE--cCCCCcEEEEe---
Q psy11351          2 ASGDPIKVLRVIGN------------DDHVISHDMASGDPIDFY----LH-----ERPVYGLSV--DPSQDAIFASA---   55 (224)
Q Consensus         2 a~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~----~~-----~~~v~~~~~--~~~~~~~l~s~---   55 (224)
                      +..++|..+++++.            .|.|.++|+++.+.....    +.     .-....++.  .+++..+|++.   
T Consensus        41 ~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~  120 (340)
T d1v04a_          41 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP  120 (340)
T ss_dssp             EECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred             EECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc
Confidence            44556666665532            489999999865433211    11     112344443  34453345443   


Q ss_pred             cCCCEEEEEecCCcccc----eeec-cCCcCeEEEEEcCCCCCeEEEec--C-------------CCcEEEEecCCCcee
Q psy11351         56 CDDGRVLLFDTRSREEA----TELA-VNSGPFHAVMFNPVEARLVATAN--S-------------KDGIALYDTRKPKEV  115 (224)
Q Consensus        56 ~~d~~i~iwd~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~~l~~~~--~-------------dg~v~i~d~~~~~~~  115 (224)
                      ....+|.++++......    ..+. ......+++.+.. ++.+++|-.  .             -+.-.+|.....+. 
T Consensus       121 ~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-  198 (340)
T d1v04a_         121 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-  198 (340)
T ss_dssp             TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-
T ss_pred             CCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-
Confidence            34568888887544321    1121 1123568888887 777777731  1             11223333333322 


Q ss_pred             eEeecCCCceeEEEEcCCCCeEeeee-cCCCcEEEECCCCC
Q psy11351        116 LMQYGSCESCMSIRFNKAGTQLLGLR-RRLPPVLYNTRSSS  155 (224)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~v~d~~~~~  155 (224)
                      ......-.....++++|++++|+++. ..+.|+.|++....
T Consensus       199 ~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         199 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            22222335678899999998877664 56779999987544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.28  E-value=0.31  Score=34.93  Aligned_cols=192  Identities=6%  Similarity=0.034  Sum_probs=104.8

Q ss_pred             ceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcC----CCC-cEEEEec-C-C--CEEEEEecCCc-ccceeec
Q psy11351          7 IKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDP----SQD-AIFASAC-D-D--GRVLLFDTRSR-EEATELA   76 (224)
Q Consensus         7 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~-~~l~s~~-~-d--~~i~iwd~~~~-~~~~~~~   76 (224)
                      ..+++.....+-|.+||++ |+.+..+. .+.++.+..-.    .+. .-++.++ . +  .+|.+|.+... ..+..+.
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            3466666677779999996 66655542 34555555331    111 2234443 2 2  36888877532 2222221


Q ss_pred             c-------CCcCeEEEEE--cCCCCC-eEEEecCCCcEEEEecCC---Cce---eeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         77 V-------NSGPFHAVMF--NPVEAR-LVATANSKDGIALYDTRK---PKE---VLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        77 ~-------~~~~i~~~~~--~~~~~~-~l~~~~~dg~v~i~d~~~---~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      .       -...+..+|+  ++.++. +++....+|.+..|.+..   +..   +.........+..|.+++....|+.+
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEe
Confidence            1       1124666666  664454 456667889998887742   211   11222355678999999999999998


Q ss_pred             ecCCCcEEEECCC--CCcceec-c-----cCCcccceeeeEEEEeCC-CCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        141 RRRLPPVLYNTRS--SSPVAQF-D-----HEGYYNSCTMKSCCFAGT-QDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       141 ~~d~~v~v~d~~~--~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      -++.-++.++...  ......+ .     ..+.+-.+++..   .+. ++-+|+|.-.+.+..+||....-.
T Consensus       198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~---~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYY---AADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEE---CGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             cCccceEEEEeccCCCccceeeecccCccccCCccccEEEE---cCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            7765555555432  2222211 1     122333333322   111 233455555678999999987533

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.27  E-value=0.59  Score=34.32  Aligned_cols=100  Identities=9%  Similarity=0.042  Sum_probs=59.9

Q ss_pred             CeeEEEEcCCCCcEEE-E----ecCCCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecC------------
Q psy11351         38 PVYGLSVDPSQDAIFA-S----ACDDGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANS------------  100 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~-s----~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------  100 (224)
                      .+...+++|++ ++++ +    |++...++++|+.+++.+..--. ......++|.+ ++..|+....            
T Consensus       126 ~~~~~~~Spd~-~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         126 ALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSSSCC
T ss_pred             eecceEecCCC-CEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcC-CCCEEEEEEeccccCccccccc
Confidence            34566789999 5555 3    33345799999999986532211 11235688999 6665543322            


Q ss_pred             ----CCcEEEEecCCCcee--eEeec--CCCceeEEEEcCCCCeEeee
Q psy11351        101 ----KDGIALYDTRKPKEV--LMQYG--SCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus       101 ----dg~v~i~d~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~~  140 (224)
                          ...|..+.+.+....  ..+..  ....+..+..++++++++..
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                125777777765332  22222  22346677889999988754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.04  E-value=0.79  Score=33.96  Aligned_cols=54  Identities=17%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             cCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccc--eee------ccCCcCeEEEEEcCC
Q psy11351         36 ERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEA--TEL------AVNSGPFHAVMFNPV   90 (224)
Q Consensus        36 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~------~~~~~~i~~~~~~~~   90 (224)
                      -...++|+|.|++ .+|++--.+|.|++++..+++..  ..+      ..-+.....|+|+|+
T Consensus        26 L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3567899999998 78877756799999987766532  111      122456889999983

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.66  Score=31.46  Aligned_cols=104  Identities=10%  Similarity=-0.047  Sum_probs=49.3

Q ss_pred             CCeEEEecCC-----CcEEEEecCCCceeeEeec-CCCceeEEEEcCCCCeEeeeecC-----CCcEEEECCCCCcceec
Q psy11351         92 ARLVATANSK-----DGIALYDTRKPKEVLMQYG-SCESCMSIRFNKAGTQLLGLRRR-----LPPVLYNTRSSSPVAQF  160 (224)
Q Consensus        92 ~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----~~v~v~d~~~~~~~~~~  160 (224)
                      ..+++.|+.+     ..+..||..+.+....... ......+.... .+..++.++.+     .....+|..+.+....-
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeeccc
Confidence            3455555443     3467888776532211111 11111222222 34555555433     23567777655433221


Q ss_pred             ccC-CcccceeeeEEEEeCCCCeEEEEcCCCC-----eEEEEeCCCCC
Q psy11351        161 DHE-GYYNSCTMKSCCFAGTQDEYVVSGSDDF-----VLYMWRVPRDD  202 (224)
Q Consensus       161 ~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~v~iw~~~~~~  202 (224)
                      ... .....    .++..  ++++++.|+.++     .+.+||+.+.+
T Consensus       228 ~~p~~r~~~----~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         228 PMKHRRSAL----GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCSSCCBSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccCcccce----EEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            111 11111    12222  678888876543     47889999864

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.96  Score=32.70  Aligned_cols=121  Identities=12%  Similarity=0.066  Sum_probs=69.2

Q ss_pred             CCCcEEEEeCCCCceeeEE-eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceeec-----cCCcCeEEEEEc
Q psy11351         15 NDDHVISHDMASGDPIDFY-LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATELA-----VNSGPFHAVMFN   88 (224)
Q Consensus        15 ~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~   88 (224)
                      .++.+..++...-...... ....++.++.++|.   .++....++.+.++++..++......     .-.+.+.+++|+
T Consensus       103 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws  179 (381)
T d1xipa_         103 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLK  179 (381)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEET
T ss_pred             eCCCEEEEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEe
Confidence            4556777777654333322 45677888888874   45555668999999998775322211     113557888888


Q ss_pred             CCCCCeEEEecCCCcEEE-EecCCCceeeEeecCCCceeEEEEcCCCCeEeee
Q psy11351         89 PVEARLVATANSKDGIAL-YDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGL  140 (224)
Q Consensus        89 ~~~~~~l~~~~~dg~v~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  140 (224)
                      + ++..++++..++ ..+ -++.....+.........+.++.|-.+..++++-
T Consensus       180 ~-kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         180 D-RSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             T-SCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             C-CcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            8 777777764332 211 1222111111111234567888998776666654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.27  E-value=0.67  Score=30.69  Aligned_cols=173  Identities=12%  Similarity=0.119  Sum_probs=92.5

Q ss_pred             eEEEEEeCCCcEEEEeCCCCceeeEEe----------ccCCeeEEEEcCCCCcEEEEecC-CCEEEEEecCCcccceeec
Q psy11351          8 KVLRVIGNDDHVISHDMASGDPIDFYL----------HERPVYGLSVDPSQDAIFASACD-DGRVLLFDTRSREEATELA   76 (224)
Q Consensus         8 ~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~   76 (224)
                      +...+|+......+|-++.|+..+...          ....|..+.+..-++.-|+++.- .|.++|++..         
T Consensus       115 ~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpk---------  185 (313)
T d2hu7a1         115 AVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG---------  185 (313)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCS---------
T ss_pred             eEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCC---------
Confidence            456677777778888888887655431          12334444443322233444443 5555555544         


Q ss_pred             cCCcCeEEEEEcCCCCCeEEEecC---CCcEEEEecCCCceeeE-eec------CCCceeEEEEcCCCCeEeeeecCCCc
Q psy11351         77 VNSGPFHAVMFNPVEARLVATANS---KDGIALYDTRKPKEVLM-QYG------SCESCMSIRFNKAGTQLLGLRRRLPP  146 (224)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~-~~~------~~~~v~~~~~~~~~~~l~~~~~d~~v  146 (224)
                        ++.++.....+ +.+. +++-.   .....-+|++.++.... +.+      ..-.|+-+-+.|+++.++.+-.||.-
T Consensus       186 --eGS~~~ay~~~-gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s  261 (313)
T d2hu7a1         186 --EGSFSSASISP-GMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS  261 (313)
T ss_dssp             --SEEEEEEEECT-TSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             --CCcccceeEcc-Ccee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCch
Confidence              44455555555 4333 33311   11222447776543221 111      23345667799999999999999998


Q ss_pred             EEEECCCCCcceecccCCcccceeeeEEEEeCCCCeE-EEEcCCCCeEEEEeCCCCCeE
Q psy11351        147 VLYNTRSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEY-VVSGSDDFVLYMWRVPRDDIY  204 (224)
Q Consensus       147 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~v~iw~~~~~~~~  204 (224)
                      ++|.  +|+.+...  ++.+..+...       ++.. +...+...--+|-.+.+++..
T Consensus       262 ~lF~--nGk~in~p--~G~~~gat~i-------~~~iyfshsSL~tP~kI~~~~~~~~~  309 (313)
T d2hu7a1         262 AVFI--DGERVEAP--QGNHGRVVLW-------RGKLVTSHTSLSTPPRIVSLPSGEPL  309 (313)
T ss_dssp             EEEE--TTEEECCC--SSEEEEEEEE-------TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             heee--cceEecCC--CCcccceEEE-------CCEEEEeecccCCCceeEEcCCCCcc
Confidence            8886  45555443  2333332222       3333 333444555566777777664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.73  E-value=1  Score=31.41  Aligned_cols=130  Identities=12%  Similarity=0.110  Sum_probs=77.8

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCeeEEEEcC--CCCcEEEEe---cCCCEEEEEecCCccc-ce-------ee-c---cC
Q psy11351         16 DDHVISHDMASGDPIDFYLHERPVYGLSVDP--SQDAIFASA---CDDGRVLLFDTRSREE-AT-------EL-A---VN   78 (224)
Q Consensus        16 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~---~~d~~i~iwd~~~~~~-~~-------~~-~---~~   78 (224)
                      .|.+.+|..+.+.....-+|.+....+.+.-  +..++++-+   ...+.++|.++..... -.       .+ .   ..
T Consensus       175 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~  254 (327)
T d1utca2         175 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  254 (327)
T ss_dssp             EEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCT
T ss_pred             eEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcccc
Confidence            3678899998776555556665555544431  111233322   3347899998865321 01       11 1   11


Q ss_pred             CcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeEeeeecCCCc
Q psy11351         79 SGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQLLGLRRRLPP  146 (224)
Q Consensus        79 ~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v  146 (224)
                      .+---++..++ .-.++..-+.-|.+++||+.++.++..-.-..+.|..-+-+....-++....+|.|
T Consensus       255 ~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         255 NDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             TCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             CCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence            22335677787 67788888899999999999998877666556666655544444444444455544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.06  E-value=1.4  Score=31.26  Aligned_cols=159  Identities=13%  Similarity=0.068  Sum_probs=84.3

Q ss_pred             CeeEEEEcCCCCcEEEEecC------------CCEEEEEecCCcccce-ee--ccC-----CcCeEEEEE--cCCCCC-e
Q psy11351         38 PVYGLSVDPSQDAIFASACD------------DGRVLLFDTRSREEAT-EL--AVN-----SGPFHAVMF--NPVEAR-L   94 (224)
Q Consensus        38 ~v~~~~~~~~~~~~l~s~~~------------d~~i~iwd~~~~~~~~-~~--~~~-----~~~i~~~~~--~~~~~~-~   94 (224)
                      ...++...|++ ..+++++.            .|.|.++|+.+.+... .+  .+.     .-.-..+.+  .+ ++. +
T Consensus        36 G~EDi~~~~dg-~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~  113 (340)
T d1v04a_          36 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVY  113 (340)
T ss_dssp             CCCEEEECTTS-EEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEE
T ss_pred             CcceEEECCCC-cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEE
Confidence            45578889988 56555432            4899999987654321 11  110     011233333  33 333 3


Q ss_pred             EEEe---cCCCcEEEEecCCCceeeEee-----cCCCceeEEEEcCCCCeEeeeec---------------CCCcEEEEC
Q psy11351         95 VATA---NSKDGIALYDTRKPKEVLMQY-----GSCESCMSIRFNKAGTQLLGLRR---------------RLPPVLYNT  151 (224)
Q Consensus        95 l~~~---~~dg~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------------d~~v~v~d~  151 (224)
                      |++.   ....+|.+|++..........     ........+++..++.++++-..               -+...+|..
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            4443   245678888876443222211     12345688888888888877311               112344444


Q ss_pred             CCCCcceecccCCcccceeeeEEEEeCCCCeEEEEcCCCCeEEEEeCCCCCe
Q psy11351        152 RSSSPVAQFDHEGYYNSCTMKSCCFAGTQDEYVVSGSDDFVLYMWRVPRDDI  203 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~  203 (224)
                      ..++.......-...+.     ++++|+...++++-+..++|+.|++.....
T Consensus       194 ~~~~~~~~~~~l~~pNG-----I~~s~d~~~lyVa~t~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         194 SPNDVRVVAEGFDFANG-----INISPDGKYVYIAELLAHKIHVYEKHANWT  240 (340)
T ss_dssp             CSSCEEEEEEEESSEEE-----EEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             cCCceEEEcCCCCccce-----eEECCCCCEEEEEeCCCCeEEEEEeCCCcc
Confidence            33322111121122333     566664334566777788999999876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.16  E-value=2  Score=31.34  Aligned_cols=94  Identities=5%  Similarity=-0.007  Sum_probs=54.8

Q ss_pred             CCCcceEEE-EEeCCC----cEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEec---------------CCCEEE
Q psy11351          3 SGDPIKVLR-VIGNDD----HVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASAC---------------DDGRVL   62 (224)
Q Consensus         3 ~~~~~~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------------~d~~i~   62 (224)
                      +++++++++ +-+.+|    .+++.|+.+++.+...-.......+.|.+++..++.+.-               ....+.
T Consensus       132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~  211 (430)
T d1qfma1         132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY  211 (430)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred             ecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEE
Confidence            345666666 333344    699999999987653311222357899999843444431               123677


Q ss_pred             EEecCCcccc--eeeccC--CcCeEEEEEcCCCCCeEEE
Q psy11351         63 LFDTRSREEA--TELAVN--SGPFHAVMFNPVEARLVAT   97 (224)
Q Consensus        63 iwd~~~~~~~--~~~~~~--~~~i~~~~~~~~~~~~l~~   97 (224)
                      .+.+.+....  ..+...  ...+..+..++ ++++++.
T Consensus       212 ~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i  249 (430)
T d1qfma1         212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLL  249 (430)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEE
T ss_pred             EEECCCCccccccccccccCCceEEeeeccC-CcceeeE
Confidence            8888766432  223322  23456677788 6666653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.66  E-value=1.8  Score=28.58  Aligned_cols=96  Identities=19%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             cceEEEEEeCCCcEEEEeCCCCceeeEEeccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccce------------
Q psy11351          6 PIKVLRVIGNDDHVISHDMASGDPIDFYLHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEAT------------   73 (224)
Q Consensus         6 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------   73 (224)
                      ..++++.+...|.+.++-+..++.++..  ..+|.... .|..       +-|..+.+-|+..|+.++            
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt--kePI~~~~-~Pk~-------~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE   94 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN--REPINSVL-DPHY-------GVGRVILVRDVSKGAEQHALFKVNTSRPGE   94 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC--SSCCSEEC-EECT-------TBSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe--cccccCcC-CCcc-------CcceEEEEeehhcCcceeeEEEEccCCCCe
Confidence            4467888888999999998887766543  22332221 1111       112333334444443222            


Q ss_pred             --eeccCC-cCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCc
Q psy11351         74 --ELAVNS-GPFHAVMFNPVEARLVATANSKDGIALYDTRKPK  113 (224)
Q Consensus        74 --~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  113 (224)
                        .+.... -.|.+++..  +.+..++|+......+|-+..++
T Consensus        95 E~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGk  135 (313)
T d2hu7a1          95 EQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGG  135 (313)
T ss_dssp             EEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTE
T ss_pred             eeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCc
Confidence              222222 456777764  56788888888888888887664

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.37  E-value=5.4  Score=29.26  Aligned_cols=47  Identities=11%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             CCCCCcceEEEEEeCCCcEEEEeCCCCceeeEEe---------ccCCeeEEEEcCC
Q psy11351          1 MASGDPIKVLRVIGNDDHVISHDMASGDPIDFYL---------HERPVYGLSVDPS   47 (224)
Q Consensus         1 ~a~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~   47 (224)
                      |++.++++++++--.+|+|++++..+++......         -......++|+|+
T Consensus        32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4667778888776557999999988876543331         2356789999985

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.25  E-value=3.9  Score=27.52  Aligned_cols=87  Identities=13%  Similarity=0.080  Sum_probs=40.4

Q ss_pred             CCEEEEEecCCcccceeeccCCcCeEEEEEcCCCCCeEEEecCCCcEEEEecCCCceeeEeecCCCceeEEEEcCCCCeE
Q psy11351         58 DGRVLLFDTRSREEATELAVNSGPFHAVMFNPVEARLVATANSKDGIALYDTRKPKEVLMQYGSCESCMSIRFNKAGTQL  137 (224)
Q Consensus        58 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  137 (224)
                      |+.+..|.-...............|..++-.   ...++ ...++.+..|.................|..++....  +.
T Consensus       121 dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~~~-~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~  194 (273)
T d1jtdb_         121 DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTAL-AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HS  194 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEE-EEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EE
T ss_pred             cccceecccCCCCceeeeccCCceEEEEecc---ceeee-eecccceeEeecccCCcccccccccCCccceeccce--ee
Confidence            6677777543322211111122344444432   22232 234677888865543222222223456777665432  22


Q ss_pred             eeeecCCCcEEEEC
Q psy11351        138 LGLRRRLPPVLYNT  151 (224)
Q Consensus       138 ~~~~~d~~v~v~d~  151 (224)
                      +.- .|+.|+.|=.
T Consensus       195 ~~l-~dG~v~~WG~  207 (273)
T d1jtdb_         195 LAL-KDGKVIAWGD  207 (273)
T ss_dssp             EEE-ETTEEEEEEC
T ss_pred             EEE-ecCcEEEcCC
Confidence            222 3788888854

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=5.4  Score=26.58  Aligned_cols=60  Identities=8%  Similarity=0.047  Sum_probs=30.5

Q ss_pred             EEEEEeCCC----cEEEEeCCCCceeeEE--eccCCeeEEEEcCCCCcEEEEecCC---------CEEEEEecCCcc
Q psy11351          9 VLRVIGNDD----HVISHDMASGDPIDFY--LHERPVYGLSVDPSQDAIFASACDD---------GRVLLFDTRSRE   70 (224)
Q Consensus         9 ~l~~~~~dg----~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~   70 (224)
                      +.+.|+.++    .+.+||+++++....-  .....-.++... ++ .+++.|+..         ..+.+||..+.+
T Consensus         7 iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1           7 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             EEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEE-CC-EEEEEeCcccCCCCccccchhhhccccccc
Confidence            335554433    5789999987654432  111111122222 33 566666531         356677876554

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=80.55  E-value=8  Score=27.71  Aligned_cols=158  Identities=11%  Similarity=0.105  Sum_probs=78.8

Q ss_pred             eccCCeeEEEEcCCCCcEEEEecCCCEEEEEecCCcccceee-------ccCCcCeEEEEEcCCCCCeEEEecCC----C
Q psy11351         34 LHERPVYGLSVDPSQDAIFASACDDGRVLLFDTRSREEATEL-------AVNSGPFHAVMFNPVEARLVATANSK----D  102 (224)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~d----g  102 (224)
                      +-.+.|.+|+++|.+++++.++...|-|..-+ ..++.-..+       ......+.+|+++|.+++.+..+..+    .
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            44678999999999888888887765543221 122211111       11234688999999666666655322    1


Q ss_pred             cEEEEecCC-CceeeEeec---------CCCceeEEEEcCC-CCeEeeeecCCCcEEEECCCCCcceecc-c-CCcccce
Q psy11351        103 GIALYDTRK-PKEVLMQYG---------SCESCMSIRFNKA-GTQLLGLRRRLPPVLYNTRSSSPVAQFD-H-EGYYNSC  169 (224)
Q Consensus       103 ~v~i~d~~~-~~~~~~~~~---------~~~~v~~~~~~~~-~~~l~~~~~d~~v~v~d~~~~~~~~~~~-~-~~~~~~~  169 (224)
                      ...+|--.. ++.-..+..         .......+.++|. ...++++..++-|. -....++.-.... . .......
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~-~S~D~G~tW~~~~~~~~~~~~~~  166 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGI  166 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEE-EESSTTSSCEECTTSSCCCCSSS
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccccccee-eecCCCceeeecccCcccccCCc
Confidence            133454333 222222211         1123456888986 44566665554442 2334443333221 1 1111112


Q ss_pred             eeeEEEEeCCCCeEE-EEcCCCCeE
Q psy11351        170 TMKSCCFAGTQDEYV-VSGSDDFVL  193 (224)
Q Consensus       170 ~~~~~~~~~~~~~~l-~s~~~d~~v  193 (224)
                      .+..+.+.|.+...+ +++...+.|
T Consensus       167 ~~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         167 GYTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             CEEEEEECTTSTTCEEEEESSTTCE
T ss_pred             cceEEEecccccceeeeeeeecccc
Confidence            234466777554444 344433444