Psyllid ID: psy11394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MSQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEEcccEEEEcHHHHHcccccccccHHHHcccccccccccccccccccHHHHHHHHHcccEEEEcccccHHHHHHHHccccccHHHcccHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHEEEEEEEEHHHHHccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHEEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEcccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEEEccEEEEEEHHHHHcccccccccHHHHHHHEEccccEEEEccccccHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHHccccHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHEHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msqdedgppshsqhypgvdhfepiphdhdfCERVVINVSGLRFETQLRTLnqfpetllgdparriryfdplrneyffdrnrpsFDAILYYYQsggrlrrpvnvpldvfseeikfyelgdvatnkfredegfikeeekplpshefQRKVWLLfeypessqAARVVAIISVFVILLSIVIFCLetlpefkhykvfntttngtkieedevpditdpffliETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYfaeagsdqsffksIPDAFWWAVVTMTTVgygdmrcgaffeRGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFaeagsensffksipDAFWWAVVTMTTVGYGDM
Flexible Loop (DISEMBL)
msqdedgppshSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTlnqfpetllgdparRIRYFDPLRneyffdrnrpsFDAILYYYQSGGRLRRPVNVPLDVFSEEIkfyelgdvatnKFREDEgfikeeekplpshEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTtngtkieedevpdITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Low Complexity Region (SEG)
MSQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARvvaiisvfvillsivifCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPslyclltslllysVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAvvtmttvgygvvLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Disordered region (IsUnstruct)
******************DHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFI**********EFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY***
Disordered Region (DISOPRED)
*********************************VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Disordered Region (DISEMBL)
*************HYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Disordered Region (DISPRO)
**********************PIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKH******************PDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVV*******GDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
P08510	655	Potassium voltage-gated c	yes	N/A	0.918	0.548	0.663	1e-132
Q09470	495	Potassium voltage-gated c	yes	N/A	0.902	0.713	0.508	1e-98
P10499	495	Potassium voltage-gated c	yes	N/A	0.907	0.717	0.506	2e-98
P16388	495	Potassium voltage-gated c	yes	N/A	0.890	0.703	0.515	3e-98
P63142	499	Potassium voltage-gated c	no	N/A	0.892	0.699	0.501	9e-97
P63141	499	Potassium voltage-gated c	no	N/A	0.892	0.699	0.501	9e-97
P16389	499	Potassium voltage-gated c	no	N/A	0.892	0.699	0.501	1e-96
P16390	528	Potassium voltage-gated c	no	N/A	0.895	0.662	0.5	4e-96
P15384	525	Potassium voltage-gated c	no	N/A	0.900	0.670	0.5	2e-95
P22001	575	Potassium voltage-gated c	no	N/A	0.895	0.608	0.497	4e-95

>sp|P08510|KCNAS_DROME Potassium voltage-gated channel protein Shaker OS=Drosophila melanogaster GN=Sh PE=1 SV=3

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/377 (66%), Positives = 281/377 (74%), Gaps = 18/377 (4%)

Query: 20  HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDR 79
           HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDPARR+RYFDPLRNEYFFDR
Sbjct: 85  HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDR 144

Query: 80  NRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPL 139
           +RPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD A NKFREDEGFIKEEE+PL
Sbjct: 145 SRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPL 204

Query: 140 PSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNG 199
           P +E QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNG
Sbjct: 205 PDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNG 264

Query: 200 TKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVL 259
           TKIEEDEVPDITDPFFLIET  I+   + L    L     + +       +M +   + +
Sbjct: 265 TKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCR----DVMNVIDIIAI 320

Query: 260 FSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRL----R 315
               +  A   +++    ++P A          V   D          +    RL    R
Sbjct: 321 IPYFITLATVVAEEEDTLNLPKA---------PVSPQDKSSNQAMSLAILRVIRLVRVFR 371

Query: 316 KFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPD 374
            F L  +S+   ++G+++  +     + +  +  GVVLFSSAVYFAEAGSENSFFKSIPD
Sbjct: 372 IFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPD 431

Query: 375 AFWWAVVTMTTVGYGDM 391
           AFWWAVVTMTTVGYGDM
Sbjct: 432 AFWWAVVTMTTVGYGDM 448

Voltage-dependent potassium channel involved in regulation of sleep need or efficiency. Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)

>sp|Q09470|KCNA1_HUMAN Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2

 Score =  360 bits (923), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/403 (50%), Positives = 250/403 (62%), Gaps = 50/403 (12%)

Query: 4   DEDGPPSHSQ--HYP-GVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGD 60
           +    P H Q   YP   DH      DH+ CERVVIN+SGLRFETQL+TL QFP TLLG+
Sbjct: 11  EASAAPGHPQDGSYPRQADH-----DDHECCERVVINISGLRFETQLKTLAQFPNTLLGN 65

Query: 61  PARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDV 120
           P +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ 
Sbjct: 66  PKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEE 125

Query: 121 ATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFC 180
           A  KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  ARV+AI+SV VIL+SIVIFC
Sbjct: 126 AMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFC 185

Query: 181 LETLPEFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM-------PSLYCL 229
           LETLPE K  K F  T     N T I    +   TDPFF++ET  I+          +  
Sbjct: 186 LETLPELKDDKDFTGTVHRIDNTTVIYNSNI--FTDPFFIVETLCIIWFSFELVVRFFAC 243

Query: 230 LTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVT 289
            +    +  +M ++ ++  I  +I  G  +       AE   +Q                
Sbjct: 244 PSKTDFFKNIMNFIDIVAIIPYFITLGTEI-------AEQEGNQK--------------- 281

Query: 290 MTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGY 348
                 G+        R +      R F L  +S+   ++G+++  +     + +  +  
Sbjct: 282 ------GEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFI 335

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           GV+LFSSAVYFAEA    S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 336 GVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDM 378

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P10499|KCNA1_RAT Potassium voltage-gated channel subfamily A member 1 OS=Rattus norvegicus GN=Kcna1 PE=1 SV=1

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 251/405 (61%), Gaps = 50/405 (12%)

Query: 2   SQDEDGPPSHSQ--HYP-GVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLL 58
           + +    P H Q   YP   DH      DH+ CERVVIN+SGLRFETQL+TL QFP TLL
Sbjct: 9   ADEASAAPGHPQDGSYPRQADH-----DDHECCERVVINISGLRFETQLKTLAQFPNTLL 63

Query: 59  GDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG 118
           G+P +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG
Sbjct: 64  GNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELG 123

Query: 119 DVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVI 178
           + A  KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  ARV+AI+SV VIL+SIVI
Sbjct: 124 EEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVI 183

Query: 179 FCLETLPEFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM-------PSLY 227
           FCLETLPE K  K F  T     N T I    +   TDPFF++ET  I+          +
Sbjct: 184 FCLETLPELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCIIWFSFELVVRFF 241

Query: 228 CLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAV 287
              +    +  +M ++ ++  I  +I  G  +       AE   +Q              
Sbjct: 242 ACPSKTDFFKNIMNFIDIVAIIPYFITLGTEI-------AEQEGNQK------------- 281

Query: 288 VTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTV 346
                   G+        R +      R F L  +S+   ++G+++  +     + +  +
Sbjct: 282 --------GEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFL 333

Query: 347 GYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
             GV+LFSSAVYFAEA    S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 334 FIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDM 378

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P16388|KCNA1_MOUSE Potassium voltage-gated channel subfamily A member 1 OS=Mus musculus GN=Kcna1 PE=2 SV=1

 Score =  358 bits (920), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 205/398 (51%), Positives = 249/398 (62%), Gaps = 50/398 (12%)

Query: 9   PSHSQ--HYP-GVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI 65
           P H Q   YP   DH      DH+ CERVVIN+SGLRFETQL+TL QFP TLLG+P +R+
Sbjct: 16  PGHPQDGSYPRQADH-----DDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRM 70

Query: 66  RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKF 125
           RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ A  KF
Sbjct: 71  RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKF 130

Query: 126 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 185
           REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  ARV+AI+SV VIL+SIVIFCLETLP
Sbjct: 131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query: 186 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM-------PSLYCLLTSLL 234
           E K  K F  T     N T I    +   TDPFF++ET  I+          +   +   
Sbjct: 191 ELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCIIWFSFELVVRFFACPSKTD 248

Query: 235 LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVG 294
            +  +M ++ ++  I  +I  G  +       AE   +Q                     
Sbjct: 249 FFKNIMNFIDIVAIIPYFITLGTEI-------AEQEGNQK-------------------- 281

Query: 295 YGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLF 353
            G+        R +      R F L  +S+   ++G+++  +     + +  +  GV+LF
Sbjct: 282 -GEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILF 340

Query: 354 SSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           SSAVYFAEA    S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 341 SSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDM 378

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|P63142|KCNA2_RAT Potassium voltage-gated channel subfamily A member 2 OS=Rattus norvegicus GN=Kcna2 PE=1 SV=1

 Score =  353 bits (907), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 200/399 (50%), Positives = 251/399 (62%), Gaps = 50/399 (12%)

Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16  PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69

Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 70  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129

Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189

Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPSLYCLLTSL 233
                       F+T +N T I   +    TDPFF++ET  I       +   +   +  
Sbjct: 190 DENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248

Query: 234 LLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
             ++ +M  + ++  I  +I  G  L       AE   D    +         V+ +  V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301

Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVL 352
                                R F L  +S+   ++G+++  +     + +  +  GV+L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341

Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEA   +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P63141|KCNA2_MOUSE Potassium voltage-gated channel subfamily A member 2 OS=Mus musculus GN=Kcna2 PE=1 SV=1

 Score =  353 bits (907), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 200/399 (50%), Positives = 251/399 (62%), Gaps = 50/399 (12%)

Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16  PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69

Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 70  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129

Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189

Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPSLYCLLTSL 233
                       F+T +N T I   +    TDPFF++ET  I       +   +   +  
Sbjct: 190 DENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248

Query: 234 LLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
             ++ +M  + ++  I  +I  G  L       AE   D    +         V+ +  V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301

Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVL 352
                                R F L  +S+   ++G+++  +     + +  +  GV+L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341

Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEA   +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. Regulates neuronal excitability and is involved in non-rapid eye movement (NREM) sleep.

Mus musculus (taxid: 10090)

>sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2

 Score =  353 bits (906), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/399 (50%), Positives = 250/399 (62%), Gaps = 50/399 (12%)

Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16  PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69

Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 70  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129

Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189

Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPSLYCLLTSL 233
                       F+T +N T I   +    TDPFF++ET  I       +   +   +  
Sbjct: 190 DENEDMHGSGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248

Query: 234 LLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
             ++ +M  + ++  I  +I  G  L       AE   D    +         V+ +  V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301

Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVL 352
                                R F L  +S+   ++G+++  +     + +  +  GV+L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341

Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEA    S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDM 380

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P16390|KCNA3_MOUSE Potassium voltage-gated channel subfamily A member 3 OS=Mus musculus GN=Kcna3 PE=2 SV=3

 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 195/390 (50%), Positives = 245/390 (62%), Gaps = 40/390 (10%)

Query: 19  DHFEPIP------HDHDFC-ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPL 71
           D +EP+P       + D C ERVVIN+SGLRFETQL+TL QFPETLLGDP RR+RYFDPL
Sbjct: 37  DRYEPLPPALPAAGEQDCCGERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPL 96

Query: 72  RNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           RNEYFFDRNRPSFDAILYYYQSGGR+RRPVNVP+D+FSEEI+FY+LG+ A  KFREDEGF
Sbjct: 97  RNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGF 156

Query: 132 IKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK 191
           ++EEE+PLP  +FQR+VWLLFEYPESS  AR +AI+SV VIL+SIVIFCLETLPEF+  K
Sbjct: 157 LREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPEFRDEK 216

Query: 192 ---------VFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIY 242
                    VF    N T          +DPFF++ET  I+   + LL           +
Sbjct: 217 DYPASPSQDVFEAANNSTSGAPSGASSFSDPFFVVETLCIIWFSFELLVRFFACPSKATF 276

Query: 243 VHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGA 302
              ++ +       + + +   YF   G++ +                   G G      
Sbjct: 277 SRNIMNL-------IDIVAIIPYFITLGTELA----------------ERQGNGQQAMSL 313

Query: 303 FFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAE 361
              R +      R F L  +S+   ++G+++  +     + +  +  GV+LFSSAVYFAE
Sbjct: 314 AILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE 373

Query: 362 AGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           A   +S F SIPDAFWWAVVTMTTVGYGDM
Sbjct: 374 ADDPSSGFNSIPDAFWWAVVTMTTVGYGDM 403

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|P15384|KCNA3_RAT Potassium voltage-gated channel subfamily A member 3 OS=Rattus norvegicus GN=Kcna3 PE=1 SV=2

 Score =  349 bits (895), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 246/392 (62%), Gaps = 40/392 (10%)

Query: 17  GVDHFEPIP------HDHDFC-ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFD 69
           G D +EP+P       + D C ERVVIN+SGLRFETQL+TL QFPETLLGDP RR+RYFD
Sbjct: 32  GCDRYEPLPPALPAAGEQDCCGERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFD 91

Query: 70  PLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDE 129
           PLRNEYFFDRNRPSFDAILYYYQSGGR+RRPVNVP+D+FSEEI+FY+LG+ A  KFREDE
Sbjct: 92  PLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDE 151

Query: 130 GFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKH 189
           GF++EEE+PLP  +FQR+VWLLFEYPESS  AR +AI+SV VIL+SIVIFCLETLPEF+ 
Sbjct: 152 GFLREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPEFRD 211

Query: 190 YK---------VFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVM 240
            K         VF    N T          +DPFF++ET  I+   + LL          
Sbjct: 212 EKDYPASPSQDVFEAANNSTSGASSGASSFSDPFFVVETLCIIWFSFELLVRFFACPSKA 271

Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRC 300
            +   ++ +       + + +   YF   G++ +                   G G    
Sbjct: 272 TFSRNIMNL-------IDIVAIIPYFITLGTELA----------------ERQGNGQQAM 308

Query: 301 GAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYF 359
                R +      R F L  +S+   ++G+++  +     + +  +  GV+LFSSAVYF
Sbjct: 309 SLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF 368

Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           AEA   +S F SIPDAFWWAVVTMTTVGYGDM
Sbjct: 369 AEADDPSSGFNSIPDAFWWAVVTMTTVGYGDM 400

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P22001|KCNA3_HUMAN Potassium voltage-gated channel subfamily A member 3 OS=Homo sapiens GN=KCNA3 PE=2 SV=3

 Score =  348 bits (893), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 194/390 (49%), Positives = 246/390 (63%), Gaps = 40/390 (10%)

Query: 19  DHFEPIP------HDHDFC-ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPL 71
           D +EP+P       + D C ERVVIN+SGLRFETQL+TL QFPETLLGDP RR+RYFDPL
Sbjct: 84  DRYEPLPPSLPAAGEQDCCGERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPL 143

Query: 72  RNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           RNEYFFDRNRPSFDAILYYYQSGGR+RRPVNVP+D+FSEEI+FY+LG+ A  KFREDEGF
Sbjct: 144 RNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGF 203

Query: 132 IKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK 191
           ++EEE+PLP  +FQR+VWLLFEYPESS  AR +AI+SV VIL+SIVIFCLETLPEF+  K
Sbjct: 204 LREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPEFRDEK 263

Query: 192 VFNTTT---------NGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIY 242
            +  +T         N T          +DPFF++ET  I+   + LL           +
Sbjct: 264 DYPASTSQDSFEAAGNSTSGSRAGASSFSDPFFVVETLCIIWFSFELLVRFFACPSKATF 323

Query: 243 VHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGA 302
              ++ +       + + +   YF   G++ +  +                G G      
Sbjct: 324 SRNIMNL-------IDIVAIIPYFITLGTELAERQ----------------GNGQQAMSL 360

Query: 303 FFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAE 361
              R +      R F L  +S+   ++G+++  +     + +  +  GV+LFSSAVYFAE
Sbjct: 361 AILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE 420

Query: 362 AGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           A    S F SIPDAFWWAVVTMTTVGYGDM
Sbjct: 421 ADDPTSGFSSIPDAFWWAVVTMTTVGYGDM 450

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
189235374	549	PREDICTED: similar to Shaker CG12348-PC	0.946	0.673	0.673	1e-137
156540974	412	PREDICTED: potassium voltage-gated chann	0.956	0.907	0.664	1e-137
307173075	523	Potassium voltage-gated channel protein	0.961	0.718	0.665	1e-135
270004253	593	hypothetical protein TcasGA2_TC003580 [T	0.946	0.623	0.665	1e-135
242003856	559	voltage-gated channel, putative [Pedicul	0.959	0.670	0.663	1e-135
307193768	402	Potassium voltage-gated channel protein	0.951	0.925	0.664	1e-135
383866053	563	PREDICTED: potassium voltage-gated chann	0.946	0.657	0.670	1e-133
340715886	552	PREDICTED: potassium voltage-gated chann	0.961	0.681	0.675	1e-132
380019689	728	PREDICTED: potassium voltage-gated chann	0.946	0.508	0.673	1e-132
350396785	550	PREDICTED: potassium voltage-gated chann	0.951	0.676	0.671	1e-132

>gi|189235374|ref|XP_001809693.1| PREDICTED: similar to Shaker CG12348-PC [Tribolium castaneum]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/401 (67%), Positives = 299/401 (74%), Gaps = 31/401 (7%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQ+EDG   HSQ + GV HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 52  SQEEDGHTPHSQ-FTGVAHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 110

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
           ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 111 ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 170

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
            NKFREDEGFIKEEEKPLPSHEFQR VWLLFEYPESSQAARVVAIISVFVILLSIVIFCL
Sbjct: 171 INKFREDEGFIKEEEKPLPSHEFQRNVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 230

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------- 234
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 231 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLH 290

Query: 235 LYSVVMIYVHVL--IPILMYIFAGVVLFSSTVYFAEAG-SDQSFFKSIPDAFWWAVVTMT 291
            +  VM ++ ++  IP  + +   V     T+    A  S Q   KS   A   A++   
Sbjct: 291 FFRDVMNFIDIIAIIPYFITLATVVAEEEDTLNLPRAPVSPQD--KSTNQAMSLAIL--- 345

Query: 292 TVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGV 350
                         R +      R F L  +S+   ++G+++  +     + +  +  GV
Sbjct: 346 --------------RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGV 391

Query: 351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 392 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 432

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540974|ref|XP_001599260.1| PREDICTED: potassium voltage-gated channel protein Shaker-like [Nasonia vitripennis]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/399 (66%), Positives = 298/399 (74%), Gaps = 25/399 (6%)

Query: 1   MSQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGD 60
           +SQD++GP S +Q Y GV HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGD
Sbjct: 15  ISQDDNGPNSQNQ-YTGVAHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGD 73

Query: 61  PARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDV 120
           PARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++
Sbjct: 74  PARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGEL 133

Query: 121 ATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFC 180
           ATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQ ARVVAIISVFVILLSIVIFC
Sbjct: 134 ATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQGARVVAIISVFVILLSIVIFC 193

Query: 181 LETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVM 240
           LETLPEFKHY+VFNTTTNGTKIEEDEVPDITDPFFLIET        C++      SV  
Sbjct: 194 LETLPEFKHYRVFNTTTNGTKIEEDEVPDITDPFFLIETI-------CIIWFTFELSVRF 246

Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYF---AEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
           +     +     +   + + +   YF   A   +++    ++P A          V   D
Sbjct: 247 LACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDTLNLPKA---------PVSPQD 297

Query: 298 MRCGAFFERGVFCRSRL----RKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVL 352
                     +    RL    R F L  +S+   ++G+++  +     + +  +  GVVL
Sbjct: 298 KSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVL 357

Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 358 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 396

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173075|gb|EFN64205.1| Potassium voltage-gated channel protein Shaker [Camponotus floridanus]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/395 (66%), Positives = 293/395 (74%), Gaps = 19/395 (4%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDG   H+Q Y GV HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 26  SQDEDGTNPHTQ-YTGVTHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 84

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
            RR+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 85  TRRLRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGEMA 144

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQ ARVVAIISVFVILLSIVIFCL
Sbjct: 145 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQGARVVAIISVFVILLSIVIFCL 204

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMI 241
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L+   L       
Sbjct: 205 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELIVRFLACPNKFN 264

Query: 242 YVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCG 301
           +   ++ I+  I       +     AE  +       +P A          V   D    
Sbjct: 265 FFRDVMNIIDIIAIIPYFITLATVVAEEENPL----DVPKA---------PVSPQDKSTN 311

Query: 302 AFFERGVFCRSRL----RKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSA 356
                 +    RL    R F L  +S+   ++G+++  +     + +  +  GVVLFSSA
Sbjct: 312 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSA 371

Query: 357 VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VYFAEAG+++SFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 372 VYFAEAGTQDSFFKSIPDAFWWAVVTMTTVGYGDM 406

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004253|gb|EFA00701.1| hypothetical protein TcasGA2_TC003580 [Tribolium castaneum]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/401 (66%), Positives = 297/401 (74%), Gaps = 31/401 (7%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQ+EDG   HSQ + GV HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 51  SQEEDGHTPHSQ-FTGVAHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 109

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
           ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 110 ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 169

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
            NKFREDEGFIKEEEKPLPSHEFQR VWLLFEYPESSQAARVVAIISVFVILLSIVIFCL
Sbjct: 170 INKFREDEGFIKEEEKPLPSHEFQRNVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 229

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------- 234
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 230 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLH 289

Query: 235 LYSVVMIYVHV--LIPILMYIFAGVVLFSSTVYFAEAG-SDQSFFKSIPDAFWWAVVTMT 291
            +  VM ++ +  +IP  + +   V     T+    A  S Q   KS   A   A++   
Sbjct: 290 FFRDVMNFIDIIAIIPYFITLATVVAEEEDTLNLPRAPVSPQD--KSTNQAMSLAIL--- 344

Query: 292 TVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGV 350
                         R +      R F L  +S+   ++G+++  +     + +  +  GV
Sbjct: 345 --------------RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGV 390

Query: 351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VLFSS VYFAEAG+E SFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 391 VLFSSIVYFAEAGAEQSFFKSIPDAFWWAVVTMTTVGYGDM 431

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003856|ref|XP_002422887.1| voltage-gated channel, putative [Pediculus humanus corporis] gi|212505769|gb|EEB10149.1| voltage-gated channel, putative [Pediculus humanus corporis]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/395 (66%), Positives = 291/395 (73%), Gaps = 20/395 (5%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDGP  H+  + GV HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 17  SQDEDGPTPHA--FTGVVHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 74

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
           ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 75  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 134

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL
Sbjct: 135 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 194

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMI 241
           ETLPEFKHY VFNTTTNGTKIEEDEVP+ITDPFFLIET  I+   + L    L     + 
Sbjct: 195 ETLPEFKHYNVFNTTTNGTKIEEDEVPEITDPFFLIETICIIWFTFELSVRFLACPNKLN 254

Query: 242 YVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCG 301
           +   ++ I+  I       +     AE        K+              V   D    
Sbjct: 255 FFRDVMNIIDIIAIIPYFITLATVMAEEEDKLKLPKA-------------PVSPQDKSTN 301

Query: 302 AFFERGVFCRSRL----RKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSA 356
                 +    RL    R F L  +S+   ++G+++  +     + +  +  GV+LFSSA
Sbjct: 302 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVILFSSA 361

Query: 357 VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VYFAEAGS+ SFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 362 VYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 396

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193768|gb|EFN76449.1| Potassium voltage-gated channel protein Shaker [Harpegnathos saltator]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/399 (66%), Positives = 295/399 (73%), Gaps = 27/399 (6%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDG   H+Q Y GV HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 7   SQDEDGTNPHTQ-YTGVTHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 65

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
            RR+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 66  TRRLRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGEMA 125

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLP+HEFQRKVWLLFEYPESSQ ARVVAIISVFVILLSIVIFCL
Sbjct: 126 TNKFREDEGFIKEEEKPLPTHEFQRKVWLLFEYPESSQGARVVAIISVFVILLSIVIFCL 185

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------- 234
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 186 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKFN 245

Query: 235 LYSVVMIYVHVLIPILMYI-FAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
            +  VM  + ++  I  +I  A VV           G      KS   A   A++     
Sbjct: 246 FFRDVMNIIDIIAIIPYFITLATVVAEEEDTLNLPKGPVSPQDKSTNQAMSLAIL----- 300

Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVL 352
                       R +      R F L  +S+   ++G+++  +     + +  +  GVVL
Sbjct: 301 ------------RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVL 348

Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEAG+++SFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 349 FSSAVYFAEAGTQDSFFKSIPDAFWWAVVTMTTVGYGDM 387

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866053|ref|XP_003708486.1| PREDICTED: potassium voltage-gated channel protein Shaker-like [Megachile rotundata]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/401 (67%), Positives = 301/401 (75%), Gaps = 31/401 (7%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDGP  H+Q Y GV HFEPIPHDHDFCERVVINVSGL+FETQLRTLNQFP+TLLGDP
Sbjct: 64  SQDEDGPNPHTQ-YSGVTHFEPIPHDHDFCERVVINVSGLKFETQLRTLNQFPDTLLGDP 122

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
           +RR+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 123 SRRLRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 182

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQ ARVVAIISV VILLSIVIFCL
Sbjct: 183 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQGARVVAIISVVVILLSIVIFCL 242

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------- 234
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 243 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLN 302

Query: 235 LYSVVMIYVHVL--IPILMYIFAGVVLFSSTVYFAEAG-SDQSFFKSIPDAFWWAVVTMT 291
            +  VM ++ ++  IP  + +   V     T+   +A  S Q   KS   A   A++   
Sbjct: 303 FFRDVMNFIDIIAIIPYFITLATVVAEEEETLDLPKAPVSPQD--KSTNQAMSLAIL--- 357

Query: 292 TVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGV 350
                         R +      R F L  +S+   ++G+++  +     + +  +  GV
Sbjct: 358 --------------RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGV 403

Query: 351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 404 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 444

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715886|ref|XP_003396438.1| PREDICTED: potassium voltage-gated channel protein Shaker-like isoform 2 [Bombus terrestris]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/395 (67%), Positives = 292/395 (73%), Gaps = 19/395 (4%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDGP  H+Q Y GV  FEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 54  SQDEDGPNPHTQ-YTGVTQFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 112

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
            RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 113 HRRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 172

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLPSHE QRKVWLLFEYPESSQ ARVVAIISV VILLSIVIFCL
Sbjct: 173 TNKFREDEGFIKEEEKPLPSHELQRKVWLLFEYPESSQGARVVAIISVIVILLSIVIFCL 232

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMI 241
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 233 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLA------ 286

Query: 242 YVHVLIPILMYIFAGVVLFSSTV----YFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
                 P  +  F  V+ F   +    YF   G+  +  + +PD     V          
Sbjct: 287 -----CPNKLNFFRDVMNFIDIIAIIPYFITLGTVMAEEEEMPDEPKAPVSPQDKSTNQA 341

Query: 298 MRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSA 356
           M       R +      R F L  +S+   ++G+++  +     + +  +  GVVLFSSA
Sbjct: 342 MSLAIL--RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSA 399

Query: 357 VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 400 VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 434

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019689|ref|XP_003693735.1| PREDICTED: potassium voltage-gated channel protein Shaker-like [Apis florea]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/401 (67%), Positives = 299/401 (74%), Gaps = 31/401 (7%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDGP  H+Q Y GV  FEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 64  SQDEDGPNPHTQ-YTGVTQFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 122

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
            RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 123 HRRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 182

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLPSHE QRKVWLLFEYPESSQ ARVVAIISV VILLSIVIFCL
Sbjct: 183 TNKFREDEGFIKEEEKPLPSHELQRKVWLLFEYPESSQGARVVAIISVIVILLSIVIFCL 242

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------- 234
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 243 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLN 302

Query: 235 LYSVVMIYVHVLIPILMYIFAGVVLFSS--TVYFAEAG-SDQSFFKSIPDAFWWAVVTMT 291
            +  VM ++ ++  I  +I  G V+     T+   +A  S Q   KS   A   A++   
Sbjct: 303 FFRDVMNFIDIIAIIPYFITLGTVMAEEEETLDLPKAPVSPQD--KSTNQAMSLAIL--- 357

Query: 292 TVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGV 350
                         R +      R F L  +S+   ++G+++  +     + +  +  GV
Sbjct: 358 --------------RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGV 403

Query: 351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 404 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 444

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396785|ref|XP_003484664.1| PREDICTED: potassium voltage-gated channel protein Shaker-like isoform 1 [Bombus impatiens]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/399 (67%), Positives = 296/399 (74%), Gaps = 27/399 (6%)

Query: 2   SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
           SQDEDGP  H+Q Y GV  FEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct: 54  SQDEDGPNPHTQ-YTGVTQFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 112

Query: 62  ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
            RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELG++A
Sbjct: 113 HRRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGELA 172

Query: 122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 181
           TNKFREDEGFIKEEEKPLPSHE QRKVWLLFEYPESSQ ARVVAIISV VILLSIVIFCL
Sbjct: 173 TNKFREDEGFIKEEEKPLPSHELQRKVWLLFEYPESSQGARVVAIISVIVILLSIVIFCL 232

Query: 182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------- 234
           ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+   + L    L       
Sbjct: 233 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETICIIWFTFELSVRFLACPNKLN 292

Query: 235 LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQS-FFKSIPDAFWWAVVTMTTV 293
            +  VM ++ ++  I  +I  G V+        E  +  S   KS   A   A++     
Sbjct: 293 FFRDVMNFIDIIAIIPYFITLGTVMAEDEEAPDEPKAPVSPQDKSTNQAMSLAIL----- 347

Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVL 352
                       R +      R F L  +S+   ++G+++  +     + +  +  GVVL
Sbjct: 348 ------------RVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVL 395

Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM
Sbjct: 396 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 434

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
FB|FBgn0003380	655	Sh "Shaker" [Drosophila melano	0.565	0.337	0.819	7.6e-118
UNIPROTKB|F1P5Y9	491	KCNA1 "Uncharacterized protein	0.531	0.423	0.633	1.7e-88
UNIPROTKB|F1PKN8	495	KCNA1 "Uncharacterized protein	0.549	0.434	0.637	7.2e-88
UNIPROTKB|F1SL10	495	KCNA1 "Uncharacterized protein	0.544	0.430	0.635	7.2e-88
UNIPROTKB|Q09470	495	KCNA1 "Potassium voltage-gated	0.544	0.430	0.635	1.2e-87
RGD|2949	495	Kcna1 "potassium voltage-gated	0.544	0.430	0.635	1.9e-87
MGI|MGI:96654	495	Kcna1 "potassium voltage-gated	0.531	0.420	0.644	2.4e-87
UNIPROTKB|F1MLD6	495	KCNA1 "Uncharacterized protein	0.544	0.430	0.627	3.9e-87
UNIPROTKB|F1MKB0	499	KCNA2 "Uncharacterized protein	0.547	0.428	0.619	6.4e-87
UNIPROTKB|P16389	499	KCNA2 "Potassium voltage-gated	0.547	0.428	0.619	6.4e-87

FB|FBgn0003380 Sh "Shaker" [Drosophila melanogaster (taxid:7227)]

 Score = 953 (340.5 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
 Identities = 182/222 (81%), Positives = 189/222 (85%)

Query:     2 SQDEDGPPSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
             SQDE+G   H     G  HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP+TLLGDP
Sbjct:    68 SQDEEGGAGHG-FGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 126

Query:    62 ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
             ARR+RYFDPLRNEYFFDR+RPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD A
Sbjct:   127 ARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQA 186

Query:   122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCL 181
              NKFREDEGFIKEEE+PLP +E QRKVWLLFEYPESSQAAR                 CL
Sbjct:   187 INKFREDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 246

Query:   182 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIM 223
             ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET  I+
Sbjct:   247 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCII 288

GO:0007629 "flight behavior" evidence=IMP

GO:0005249 "voltage-gated potassium channel activity" evidence=ISS;NAS;TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=NAS;TAS;IPI

GO:0016021 "integral to membrane" evidence=IDA;NAS

GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS

GO:0007619 "courtship behavior" evidence=NAS;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0048150 "behavioral response to ether" evidence=NAS

GO:0050909 "sensory perception of taste" evidence=NAS

GO:0022843 "voltage-gated cation channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048675 "axon extension" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0007637 "proboscis extension reflex" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0060025 "regulation of synaptic activity" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0001508 "regulation of action potential" evidence=IMP

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP

GO:0048047 "mating behavior, sex discrimination" evidence=IDA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

UNIPROTKB|F1P5Y9 KCNA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 706 (253.6 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
 Identities = 138/218 (63%), Positives = 161/218 (73%)

Query:     9 PSHSQHYPGVDHFEPIPHD-HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRY 67
             P H Q     D ++P  HD H+ CERVVIN++GLRFETQL+TL QFP TLLG+P +R+RY
Sbjct:    16 PGHPQ-----DSYQPAAHDDHECCERVVINIAGLRFETQLKTLAQFPNTLLGNPKKRMRY 70

Query:    68 FDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRE 127
             FDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ A  KFRE
Sbjct:    71 FDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFRE 130

Query:   128 DEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEF 187
             DEGFIK+EE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLPE 
Sbjct:   131 DEGFIKDEERPLPEGEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPEL 190

Query:   188 KHYKVFNT--TTNGTKIEEDEVPDITDPFFLIETFLIM 223
             K  K +    T N T++ +  +   TDPFF++ET  I+
Sbjct:   191 KEDKEYTVHRTDNTTQVYKSNI--FTDPFFVVETLCII 226

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

UNIPROTKB|F1PKN8 KCNA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 700 (251.5 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 144/226 (63%), Positives = 160/226 (70%)

Query:     4 DE-DGPPSHSQHYPGVDHFEPIPHD-HDFCERVVINVSGLRFETQLRTLNQFPETLLGDP 61
             DE    P H Q   G  +  P  HD H+ CERVVIN+SGLRFETQL+TL QFP TLLG+P
Sbjct:    10 DEASAAPGHPQD--G-SYTRPAEHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNP 66

Query:    62 ARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVA 121
              +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ A
Sbjct:    67 KKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEA 126

Query:   122 TNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCL 181
               KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CL
Sbjct:   127 MEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCL 186

Query:   182 ETLPEFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM 223
             ETLPE K  K F  T     N T I    +   TDPFF++ET  I+
Sbjct:   187 ETLPELKDDKDFTGTVHRIDNTTVIYNSNI--FTDPFFIVETLCII 230

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

UNIPROTKB|F1SL10 KCNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 700 (251.5 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 145/228 (63%), Positives = 160/228 (70%)

Query:     4 DE-DGPPSHSQH--YPGVDHFEPIPHD-HDFCERVVINVSGLRFETQLRTLNQFPETLLG 59
             DE    P H Q   YP      P  HD H+ CERVVIN+SGLRFETQL+TL QFP TLLG
Sbjct:    10 DEASAAPGHPQDGSYP-----RPAEHDDHECCERVVINISGLRFETQLKTLAQFPNTLLG 64

Query:    60 DPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 119
             +P +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+
Sbjct:    65 NPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGE 124

Query:   120 VATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXX 179
              A  KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 
Sbjct:   125 EAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIF 184

Query:   180 CLETLPEFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM 223
             CLETLPE K  K F  T     N T I    +   TDPFF++ET  I+
Sbjct:   185 CLETLPELKDDKDFTGTVHRLDNTTVIYNSNI--FTDPFFIVETLCII 230

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

UNIPROTKB|Q09470 KCNA1 "Potassium voltage-gated channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 698 (250.8 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
 Identities = 145/228 (63%), Positives = 160/228 (70%)

Query:     4 DE-DGPPSHSQH--YPG-VDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLG 59
             DE    P H Q   YP   DH      DH+ CERVVIN+SGLRFETQL+TL QFP TLLG
Sbjct:    10 DEASAAPGHPQDGSYPRQADH-----DDHECCERVVINISGLRFETQLKTLAQFPNTLLG 64

Query:    60 DPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 119
             +P +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+
Sbjct:    65 NPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGE 124

Query:   120 VATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXX 179
              A  KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 
Sbjct:   125 EAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIF 184

Query:   180 CLETLPEFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM 223
             CLETLPE K  K F  T     N T I    +   TDPFF++ET  I+
Sbjct:   185 CLETLPELKDDKDFTGTVHRIDNTTVIYNSNI--FTDPFFIVETLCII 230

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0005267 "potassium channel activity" evidence=TAS

GO:0006813 "potassium ion transport" evidence=TAS

GO:0015079 "potassium ion transmembrane transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0044224 "juxtaparanode region of axon" evidence=ISS

RGD|2949 Kcna1 "potassium voltage-gated channel, shaker-related subfamily, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 696 (250.1 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
 Identities = 145/228 (63%), Positives = 160/228 (70%)

Query:     4 DE-DGPPSHSQH--YPG-VDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLG 59
             DE    P H Q   YP   DH      DH+ CERVVIN+SGLRFETQL+TL QFP TLLG
Sbjct:    10 DEASAAPGHPQDGSYPRQADH-----DDHECCERVVINISGLRFETQLKTLAQFPNTLLG 64

Query:    60 DPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 119
             +P +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+
Sbjct:    65 NPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGE 124

Query:   120 VATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXX 179
              A  KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 
Sbjct:   125 EAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIF 184

Query:   180 CLETLPEFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM 223
             CLETLPE K  K F  T     N T I    +   TDPFF++ET  I+
Sbjct:   185 CLETLPELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCII 230

GO:0005251 "delayed rectifier potassium channel activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0044224 "juxtaparanode region of axon" evidence=IEA;ISO

GO:0051260 "protein homooligomerization" evidence=IEA

MGI|MGI:96654 Kcna1 "potassium voltage-gated channel, shaker-related subfamily, member 1" [Mus musculus (taxid:10090)]

 Score = 695 (249.7 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 143/222 (64%), Positives = 158/222 (71%)

Query:     9 PSHSQH--YPG-VDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI 65
             P H Q   YP   DH      DH+ CERVVIN+SGLRFETQL+TL QFP TLLG+P +R+
Sbjct:    16 PGHPQDGSYPRQADH-----DDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRM 70

Query:    66 RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKF 125
             RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ A  KF
Sbjct:    71 RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKF 130

Query:   126 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 185
             REDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   131 REDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLP 190

Query:   186 EFKHYKVFNTTT----NGTKIEEDEVPDITDPFFLIETFLIM 223
             E K  K F  T     N T I    +   TDPFF++ET  I+
Sbjct:   191 ELKDDKDFTGTIHRIDNTTVIYTSNI--FTDPFFIVETLCII 230

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=ISO;IBA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0044224 "juxtaparanode region of axon" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

UNIPROTKB|F1MLD6 KCNA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 693 (249.0 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 143/228 (62%), Positives = 160/228 (70%)

Query:     4 DE-DGPPSHSQH--YPGVDHFEPIPHD-HDFCERVVINVSGLRFETQLRTLNQFPETLLG 59
             DE    P H Q   YP      P  HD H+ CERVVIN+SGLRFETQL+TL QFP TLLG
Sbjct:    10 DEASAAPGHPQDSSYP-----RPAEHDDHECCERVVINISGLRFETQLKTLAQFPNTLLG 64

Query:    60 DPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 119
             +P +R+RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+
Sbjct:    65 NPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGE 124

Query:   120 VATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXX 179
              A  KFREDEGFIKEEE+PLP  E+QR+VWLLFEYPESS  AR                 
Sbjct:   125 EAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIF 184

Query:   180 CLETLPEFKHYKVF----NTTTNGTKIEEDEVPDITDPFFLIETFLIM 223
             CLETLPE K  K F    +   N T +    +   TDPFF++ET  I+
Sbjct:   185 CLETLPELKDEKDFPGAVHRLDNTTVVYNANI--FTDPFFIVETLCII 230

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

UNIPROTKB|F1MKB0 KCNA2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 693 (249.0 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
 Identities = 140/226 (61%), Positives = 162/226 (71%)

Query:     8 PPSHSQHYPG--VDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI 65
             P   +   PG   D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+
Sbjct:     8 PADEAAALPGHPQDTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRM 66

Query:    66 RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKF 125
             RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   F
Sbjct:    67 RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMF 126

Query:   126 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 185
             REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query:   186 EFK------HYK--VFNTTTNGTKIEEDEVPDITDPFFLIETFLIM 223
              F+      H     F+T +N T I   +    TDPFF++ET  I+
Sbjct:   187 IFRDENEDMHGSGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCII 231

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0021633 "optic nerve structural organization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|P16389 KCNA2 "Potassium voltage-gated channel subfamily A member 2" [Homo sapiens (taxid:9606)]

 Score = 693 (249.0 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
 Identities = 140/226 (61%), Positives = 162/226 (71%)

Query:     8 PPSHSQHYPG--VDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI 65
             P   +   PG   D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+
Sbjct:     8 PADEAAALPGHPQDTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRM 66

Query:    66 RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKF 125
             RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   F
Sbjct:    67 RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMF 126

Query:   126 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLP 185
             REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP
Sbjct:   127 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 186

Query:   186 EFK------HYK--VFNTTTNGTKIEEDEVPDITDPFFLIETFLIM 223
              F+      H     F+T +N T I   +    TDPFF++ET  I+
Sbjct:   187 IFRDENEDMHGSGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCII 231

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IEA

GO:0021633 "optic nerve structural organization" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=TAS

GO:0005251 "delayed rectifier potassium channel activity" evidence=TAS

GO:0006813 "potassium ion transport" evidence=TAS

GO:0005267 "potassium channel activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0044224 "juxtaparanode region of axon" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P08510	KCNAS_DROME	No assigned EC number	0.6631	0.9181	0.5480	yes	N/A
P10499	KCNA1_RAT	No assigned EC number	0.5061	0.9079	0.7171	yes	N/A
Q09470	KCNA1_HUMAN	No assigned EC number	0.5086	0.9028	0.7131	yes	N/A
P16388	KCNA1_MOUSE	No assigned EC number	0.5150	0.8900	0.7030	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	391
pfam02214	92	pfam02214, K_tetra, K+ channel tetramerisation dom	7e-40
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	2e-08
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	3e-05
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	3e-05
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-04
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	0.004
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	0.004

>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain

 Score =  136 bits (345), Expect = 7e-40
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query: 34  VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
           V +NV G RFET   TL +FP+TLLG   +R  ++D   NEYFFDR+   F+ IL +Y++
Sbjct: 1   VRLNVGGKRFETSKSTLTRFPDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYRT 60

Query: 94  GGRLRRPVNVPLDVFSEEIKFYELGD 119
           GG+L RP  V LD F EE++FY LG+
Sbjct: 61  GGKLHRPEEVCLDSFLEELEFYGLGE 86

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 34  VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
           V + V G +F      L           +   +        Y  D +   F A+L +  +
Sbjct: 2   VTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKE-SDKSEIYLDDVSPEDFRALLNFLYT 60

Query: 94  GGRLRRPVNVPLDVFSEEIKFYELGDVAT 122
            G+L  P    ++   E   + ++  +  
Sbjct: 61  -GKLDLPEE-NVEELLELADYLQIPGLVE 87

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 350 VVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           +VL    VY++    E  +     DA +++ VT+TT+GYGD+
Sbjct: 5   LVLIFGTVYYSL--EEEGWGWDFLDALYFSFVTLTTIGYGDI 44

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGV 308
           +L+ +  G V +       E G    F     DA +++ VT+TT+GYGD+       R +
Sbjct: 3   LLLVLIFGTVYY----SLEEEGWGWDFL----DALYFSFVTLTTIGYGDIVPLTDAGR-L 53

Query: 309 FC 310
           F 
Sbjct: 54  FT 55

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 222 IMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPD 281
            + SL  LL  LLL  ++ I+      I+     G  L           +  S F S  +
Sbjct: 90  SLKSLLNLL--LLLLLLLFIFA-----IIGVQLFGGELDKCCDKNENPINGNSNFDSYGE 142

Query: 282 AFWWAVVTMTTVGYGDMRCGAFFERGVFC 310
           A  W   T+TT G+GD+         V  
Sbjct: 143 ALLWLFRTLTTEGWGDVMYDTLVPGTVLG 171

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 226 LYCLLTSLLL---------YSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFF 276
            YC++  + L          S+    +  +I I   +F         +Y  +  S     
Sbjct: 112 GYCIVLLVALLIYRRDFDRSSLAAGTLFAVISITSLLFYSTF---GALYLGDGFSPP--I 166

Query: 277 KSIPDAFWWAVVTMTTVGYGD 297
           +S+  AF++++VTM+TVGYGD
Sbjct: 167 ESLSTAFYFSIVTMSTVGYGD 187

Length = 393

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 12/20 (60%), Positives = 18/20 (90%)

Query: 371 SIPDAFWWAVVTMTTVGYGD 390
           S+  AF++++VTM+TVGYGD
Sbjct: 168 SLSTAFYFSIVTMSTVGYGD 187

Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
KOG1545|consensus	507		100.0
KOG3713|consensus	477		100.0
KOG4390|consensus	632		100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	99.89
KOG1419|consensus	654		99.88
KOG2714|consensus	465		99.73
KOG2715|consensus	210		99.71
KOG1665|consensus	302		99.65
KOG2716|consensus	230		99.64
KOG3713|consensus	477		99.64
KOG2723|consensus	221		99.62
KOG1545|consensus	507		99.61
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.45
KOG0498|consensus	727		99.01
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.96
KOG1420|consensus	1103		98.95
KOG4390|consensus	632		98.93
KOG2301|consensus	1592		98.9
KOG2302|consensus	1956		98.67
KOG4404|consensus	350		98.63
KOG1419|consensus	654		98.62
KOG2302|consensus	1956		98.61
KOG2301|consensus	1592		98.59
KOG0501|consensus	971		98.53
KOG3840|consensus	438		98.35
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	98.27
KOG1418|consensus	433		98.24
KOG0500|consensus	536		98.16
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.97
PRK10537	393	voltage-gated potassium channel; Provisional	97.94
PRK10537	393	voltage-gated potassium channel; Provisional	97.12
KOG0499|consensus	815		96.74
PLN03223	1634	Polycystin cation channel protein; Provisional	96.66
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	96.53
PLN03192	823	Voltage-dependent potassium channel; Provisional	96.52
KOG1420|consensus	1103		96.5
KOG3193|consensus	1087		96.06
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	95.86
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	94.69
KOG3599|consensus	798		93.67
KOG1418|consensus	433		93.32
TIGR00870	743	trp transient-receptor-potential calcium channel p	90.53
KOG3614|consensus	1381		89.95
PHA03098	534	kelch-like protein; Provisional	86.69
KOG3684|consensus	489		86.43
KOG4404|consensus	350		83.11

>KOG1545|consensus

Probab=100.00  E-value=3e-80  Score=581.68  Aligned_cols=338  Identities=57%  Similarity=0.940  Sum_probs=304.8

Q ss_pred             CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394         28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDV  107 (391)
Q Consensus        28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~  107 (391)
                      ..+++||++||+|.||+|..+||.+||+|+||++.+|..++|+.++|||||||+.+|..||.|||+||++++|.+++.+.
T Consensus        57 ~~~~ervvINisGlRFeTql~TL~qfP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVPlDi  136 (507)
T KOG1545|consen   57 SCCCERVVINISGLRFETQLKTLAQFPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDI  136 (507)
T ss_pred             cccccEEEEEeccceehHHHHHHhhCchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceecCCccccHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcchhcchhhhccccccccCCCCCchHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccc
Q psy11394        108 FSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEF  187 (391)
Q Consensus       108 ~~~E~~f~~l~~~~~e~~~~~e~~~~~~~~~~~~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~  187 (391)
                      |.||.+||+|+++.+++++++|+..+++++++|.+.+||++|.++|.|+||.+|++++++++++|++|++++|+||+|++
T Consensus       137 F~eEirFyqlG~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPef  216 (507)
T KOG1545|consen  137 FLEEIRFYQLGDEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEF  216 (507)
T ss_pred             HHHHHHHHHhhHHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc----c-----CCCcc---cccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy11394        188 KHYKVFNT----T-----TNGTK---IEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIYVHVLIP  248 (391)
Q Consensus       188 ~~~~~~~~----~-----~~~~~---~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~iiDll~i  248 (391)
                      +..+....    .     .|.+.   ........++++|+++|+.|++||++|+++|++       |+++.+|+||+++|
T Consensus       217 rderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI  296 (507)
T KOG1545|consen  217 RDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAI  296 (507)
T ss_pred             hhhccccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            87532211    0     01111   111123357899999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhccc
Q psy11394        249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLV  328 (391)
Q Consensus       249 lp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l  328 (391)
                      +|+++.++..+.+       +...+++   -..++-.|++++       +|.+|++  |||||.|+++++ |      +|
T Consensus       297 ~PyFitlgtela~-------q~g~g~~---gqqaMSlAILRV-------iRLVRVF--RIFKLSRHSkGL-Q------IL  350 (507)
T KOG1545|consen  297 IPYFITLGTELAE-------QQGGGGQ---GQQAMSLAILRV-------IRLVRVF--RIFKLSRHSKGL-Q------IL  350 (507)
T ss_pred             HHHHHHHhHHHHH-------hhcCCcc---chhhhhHHHHHH-------HHHHHHh--hheeeccccchH-H------HH
Confidence            9999999876642       2211111   124566788888       9999999  999999999999 9      99


Q ss_pred             ccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        329 GKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       329 ~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++++++|+++++++++++++++++|++.+|+.|.+.+.++|.+++||+|||+||||||||||+
T Consensus       351 GqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm  413 (507)
T KOG1545|consen  351 GQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDM  413 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999996

>KOG3713|consensus

Probab=100.00  E-value=1.4e-74  Score=567.84  Aligned_cols=332  Identities=33%  Similarity=0.509  Sum_probs=277.9

Q ss_pred             CCCCceEEEEeCCeeeeecHHHhccCCCccccCccC---------CccCCCCCCceeeecCCCCChHHHHhhhhcCCeee
Q psy11394         28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPAR---------RIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR   98 (391)
Q Consensus        28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~---------~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~   98 (391)
                      +..+++|+|||||+||++.++||+++|.|+|+++..         .+++||+.++||||||||.+|.+||||||| ||||
T Consensus        27 ~~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrt-GkLH  105 (477)
T KOG3713|consen   27 GALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRT-GKLH  105 (477)
T ss_pred             CCcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhc-Ceec
Confidence            456679999999999999999999999999997643         278999999999999999999999999999 8999


Q ss_pred             cCCCCCHHhHHHHHhcCCCcchhcchh--------hhcc--cccc----c---------cCCCCCchHHHHHHHHHhccC
Q psy11394         99 RPVNVPLDVFSEEIKFYELGDVATNKF--------REDE--GFIK----E---------EEKPLPSHEFQRKVWLLFEYP  155 (391)
Q Consensus        99 ~p~~~~~~~~~~E~~f~~l~~~~~e~~--------~~~e--~~~~----~---------~~~~~~~~~~r~~i~~~le~P  155 (391)
                      +|.++|...|.||++||||++.+++.+        +++.  ....    +         +....++.++|+|+|+++|+|
T Consensus       106 ~p~~vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~~ee~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~rlW~~~E~P  185 (477)
T KOG3713|consen  106 VPADVCPLSFEEELDYWGIDEAHLESCCWMRYRQRREELLEELDRPDPDEEELREREGPEFDGGRCGRLRRRLWALLENP  185 (477)
T ss_pred             cccccchHHHHHHHHHhCCChhhhhHHhHHHHhhcHHHHhhhhcccCchhhhHHhhccccccCCChhhHHHHHHHHhcCC
Confidence            999999999999999999999887633        1110  0000    0         011345678999999999999


Q ss_pred             CCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-
Q psy11394        156 ESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-  234 (391)
Q Consensus       156 ~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-  234 (391)
                      .||.+||+|+++|+++|++|++.+|+.|+|++|.....+.+...  ............+.++|.+|++|||+||++|++ 
T Consensus       186 ~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~--~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~  263 (477)
T KOG3713|consen  186 GSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLV--NVEKIESEPHPILTYVETVCIAWFTFEYLLRFLV  263 (477)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccc--cccccCCCCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999974322111000  111123345567889999999999999999999 


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccccee
Q psy11394        235 ------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGV  308 (391)
Q Consensus       235 ------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ri  308 (391)
                            |+|+++||||+++|+|+|+++++...+.     |.   ...+...     ..++++       +|.+|++  ||
T Consensus       264 ~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~-----~~---~~~l~~~-----~~vvrv-------lR~lRI~--RI  321 (477)
T KOG3713|consen  264 APNKLEFFKSPLNIIDLLAILPFYLELLLTLFGG-----ES---LKELENA-----GLVVRV-------LRVLRIL--RI  321 (477)
T ss_pred             CchHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc-----ch---HHHHhhh-----hhhHHH-------HHHHHHH--HH
Confidence                  9999999999999999999998766432     11   1111111     125566       8888999  99


Q ss_pred             eeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhccccc
Q psy11394        309 FCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY  388 (391)
Q Consensus       309 lkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGY  388 (391)
                      +||.|++.|| |      .|+.+++++.++++++++++.+++++||.++|++|++.++++|+|+|.++|||+||||||||
T Consensus       322 ~KLaRhS~GL-r------~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGY  394 (477)
T KOG3713|consen  322 FKLARHSTGL-R------TLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGY  394 (477)
T ss_pred             HHHHhhhHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecc
Confidence            9999999999 9      99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy11394        389 GDM  391 (391)
Q Consensus       389 GDi  391 (391)
                      ||+
T Consensus       395 GDm  397 (477)
T KOG3713|consen  395 GDM  397 (477)
T ss_pred             cCc
Confidence            997

>KOG4390|consensus

Probab=100.00  E-value=2.2e-61  Score=457.76  Aligned_cols=316  Identities=31%  Similarity=0.508  Sum_probs=268.0

Q ss_pred             CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394         28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDV  107 (391)
Q Consensus        28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~  107 (391)
                      .+.++.++|||+|+||+|++.||.|||+|+||+-.+ .-+||++++||||||||++|+|||||||| ||||.|...|+..
T Consensus        36 ~r~De~lvlNvSGrRFeTWknTLeryPdTLLGSsEk-eFFy~~dt~eYFFDRDPdiFRhvLnFYRT-GkLHyPR~ECi~A  113 (632)
T KOG4390|consen   36 KRQDELLVLNVSGRRFETWKNTLERYPDTLLGSSEK-EFFYDEDTGEYFFDRDPDIFRHVLNFYRT-GKLHYPRHECISA  113 (632)
T ss_pred             hccCcEEEEeccccchhHHHhHHHhCchhhhCCcch-heeecCCcccccccCChHHHHHHHHHhhc-CcccCchHHHHHH
Confidence            457889999999999999999999999999998543 35899999999999999999999999999 8999999999999


Q ss_pred             HHHHHhcCCCcchhc-----chhhhcc-----cccccc------CCCCC-chHHHHHHHHHhccCCCChhhhhhheeehh
Q psy11394        108 FSEEIKFYELGDVAT-----NKFREDE-----GFIKEE------EKPLP-SHEFQRKVWLLFEYPESSQAARVVAIISVF  170 (391)
Q Consensus       108 ~~~E~~f~~l~~~~~-----e~~~~~e-----~~~~~~------~~~~~-~~~~r~~i~~~le~P~ss~~a~~~~~~~~~  170 (391)
                      +-||+.||||-++.+     |+|++..     +.++++      +..+| ...+|+++|+.+|||++|..|.+|..+..+
T Consensus       114 yDeELaF~Gl~PeligDCCyEeYkDrkrENaERL~dd~~~e~ag~~~~p~~ls~rq~mWrAFENPHTst~ALVFYYVtGF  193 (632)
T KOG4390|consen  114 YDEELAFYGLVPELIGDCCYEEYKDRKRENAERLQDDEDAENAGGPALPAGLSLRQRMWRAFENPHTSTAALVFYYVTGF  193 (632)
T ss_pred             hhhhhhHhcccHHHHhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCCCcccchHHHHHHHHhcCCCcchhhhhhhhhhhh
Confidence            999999999988754     3343221     112111      12233 378999999999999999999999999999


Q ss_pred             HHHhhhhhheeecCccccccccccccCCCccccc-CCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHH
Q psy11394        171 VILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEE-DEVPDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIY  242 (391)
Q Consensus       171 ~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~i  242 (391)
                      +|.+|+++-++||+|.-...        + ++.+ .+-..+...|+.+|+.|+++||.||++|++       |+++.+.+
T Consensus       194 FIAVSVi~NvVETiPCg~~~--------~-~~~e~pCGEry~~aFFclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSi  264 (632)
T KOG4390|consen  194 FIAVSVIANVVETIPCGGSP--------G-RSKELPCGERYPVAFFCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSI  264 (632)
T ss_pred             hhhhhhhhceeeecccCCCC--------C-CceecccccccceeeEEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHH
Confidence            99999999999999864431        0 0111 112246678999999999999999999999       99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHh
Q psy11394        243 VHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEY  322 (391)
Q Consensus       243 iDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~  322 (391)
                      ||+++|+|+|+++++.-         ++.       ..    -+.+|        +|.+|++  ||||..|+..++ +  
T Consensus       265 IDVvAIlPYYigLv~t~---------N~D-------VS----GaFVT--------LRVFRVF--RIFKFSRHSQGL-R--  311 (632)
T KOG4390|consen  265 IDVVAILPYYIGLVMTD---------NED-------VS----GAFVT--------LRVFRVF--RIFKFSRHSQGL-R--  311 (632)
T ss_pred             HHHhhhhhhheEEEecC---------Ccc-------cc----ceeEE--------EEeeeee--eeeeeccccccc-c--
Confidence            99999999998875311         111       11    12344        5899999  999999999999 9  


Q ss_pred             hhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        323 SRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       323 ~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                          +|+.+++....+++.+++.+.+++++|+.+||+.|.+...++|++++.|+|+++|||||.||||+
T Consensus       312 ----ILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDM  376 (632)
T KOG4390|consen  312 ----ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDM  376 (632)
T ss_pred             ----hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeecccccc
Confidence                99999999999999999999999999999999999999999999999999999999999999996

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.89  E-value=2.3e-24  Score=173.49  Aligned_cols=91  Identities=35%  Similarity=0.593  Sum_probs=77.8

Q ss_pred             EEEEeCCeeeeecHHHhccCCCccccCccCC--ccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHH
Q psy11394         34 VVINVSGLRFETQLRTLNQFPETLLGDPARR--IRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE  111 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~--~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E  111 (391)
                      |+|||||++|+|+++||.++|+|+|+++.+.  .+.+++++++|||||||++|++||||||+||+++.|++.+...+.+|
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~E   80 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEE   80 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHH
Confidence            7899999999999999999999999998654  46788889999999999999999999999778999989999999999


Q ss_pred             HhcCCCcchhcch
Q psy11394        112 IKFYELGDVATNK  124 (391)
Q Consensus       112 ~~f~~l~~~~~e~  124 (391)
                      |+||+|.+..++.
T Consensus        81 a~fy~l~~l~i~~   93 (94)
T PF02214_consen   81 AEFYGLDELFIED   93 (94)
T ss_dssp             HHHHT-HHHHBHH
T ss_pred             HHHcCCCccccCC
Confidence            9999999886654

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG1419|consensus

Probab=99.88  E-value=2.9e-24  Score=212.90  Aligned_cols=196  Identities=21%  Similarity=0.340  Sum_probs=156.0

Q ss_pred             chHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhh
Q psy11394        141 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETF  220 (391)
Q Consensus       141 ~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v  220 (391)
                      -+++|.++|++||.|...+ +..+++++.++++.+++.-++.|.++.+.                   .....++++|++
T Consensus        74 ~Rr~q~~vYN~LERPrGWk-af~YH~~VFllVl~CLILsV~STi~e~~~-------------------~a~~~L~~LEiv  133 (654)
T KOG1419|consen   74 YRRIQNKVYNFLERPRGWK-AFLYHFFVFLLVLSCLILSVLSTIEEYEK-------------------LASGILYILEIV  133 (654)
T ss_pred             HHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHhcccHHHHH-------------------HHHHHHHHHHHH
Confidence            4678889999999997432 45677777777777777788999887765                   245678999999


Q ss_pred             hhhhHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccce
Q psy11394        221 LIMPSLYCLLTSLL----------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFW  284 (391)
Q Consensus       221 ~~~~F~~E~llRl~----------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w  284 (391)
                      .++||.+||++|+|                |.+++..+||+++++....            .+..+.+.+.|.+.     
T Consensus       134 ~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~------------vl~~g~qG~vfatS-----  196 (654)
T KOG1419|consen  134 MIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIA------------VLAAGSQGNVFATS-----  196 (654)
T ss_pred             HHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeee------------EEEecCccceeehh-----
Confidence            99999999999999                8899999999987665422            12223444444321     


Q ss_pred             eeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCC
Q psy11394        285 WAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGS  364 (391)
Q Consensus       285 ~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~  364 (391)
                               ..+-+|.+.++  |++|.-|....+ +      .|+.++.....+|....++-+++.+..+.++|..|.+.
T Consensus       197 ---------alrslRFlQIL--Rmlr~DRrggTW-K------LLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~  258 (654)
T KOG1419|consen  197 ---------ALRSLRFLQIL--RMLRMDRRGGTW-K------LLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDA  258 (654)
T ss_pred             ---------hhhhhHHHHHH--HHHHhhccCchh-h------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                     11227888888  999999988777 8      88988888899999999998888888899999999874


Q ss_pred             C----CCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        365 E----NSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       365 ~----~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +    +..|.+|.||+||.++|+|||||||+
T Consensus       259 ~~e~~n~~F~TyADALWWG~ITltTIGYGDk  289 (654)
T KOG1419|consen  259 QGEGTNDEFPTYADALWWGVITLTTIGYGDK  289 (654)
T ss_pred             ccccccccchhHHHHHHhhheeEEeeccCCc
Confidence            3    45899999999999999999999995

>KOG2714|consensus

Probab=99.73  E-value=3e-18  Score=166.46  Aligned_cols=97  Identities=28%  Similarity=0.417  Sum_probs=83.5

Q ss_pred             CCCCCCCceEEEEeCCeeeeecHHHhccCC-CccccCcc-CCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCC
Q psy11394         25 PHDHDFCERVVINVSGLRFETQLRTLNQFP-ETLLGDPA-RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVN  102 (391)
Q Consensus        25 ~~~~~~~~~v~lNVgG~~f~t~~~tl~~~p-~t~l~~~~-~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~  102 (391)
                      +..+.++++|+|||||++|+|+++||...| +|+++.+. .+-....++.+.+||||||++|..||||||| |.|..+..
T Consensus         4 ~~~~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRT-g~L~~~g~   82 (465)
T KOG2714|consen    4 PAMGSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRT-GDLDASGV   82 (465)
T ss_pred             cccCCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhc-CCCCCccC
Confidence            344567899999999999999999999998 99998874 3445567788899999999999999999999 89988766


Q ss_pred             CCHHhHHHHHhcCCCcchhc
Q psy11394        103 VPLDVFSEEIKFYELGDVAT  122 (391)
Q Consensus       103 ~~~~~~~~E~~f~~l~~~~~  122 (391)
                      ...+.+.+||.||||.+...
T Consensus        83 ~~~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   83 FPERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             chhhhhhhhhhhcCcHHHHH
Confidence            67777777999999988654

>KOG2715|consensus

Probab=99.71  E-value=3e-18  Score=146.69  Aligned_cols=92  Identities=25%  Similarity=0.304  Sum_probs=81.3

Q ss_pred             CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCc---cCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCC
Q psy11394         27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI---RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV  103 (391)
Q Consensus        27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~---~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~  103 (391)
                      ..+.+..|+|||||+.|.|+++||.|.|.+++.+++++.   +.-.++++.|+|||||..|..||||+|. |||.+.. +
T Consensus        16 ~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRh-gklvl~~-l   93 (210)
T KOG2715|consen   16 GNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRH-GKLVLNK-L   93 (210)
T ss_pred             CCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhc-chhhhhh-h
Confidence            344578999999999999999999999999999887654   3456788999999999999999999999 8998766 8


Q ss_pred             CHHhHHHHHhcCCCcch
Q psy11394        104 PLDVFSEEIKFYELGDV  120 (391)
Q Consensus       104 ~~~~~~~E~~f~~l~~~  120 (391)
                      ..+..++||+||+++..
T Consensus        94 ~eeGvL~EAefyn~~~l  110 (210)
T KOG2715|consen   94 SEEGVLEEAEFYNDPSL  110 (210)
T ss_pred             hhhccchhhhccCChHH
Confidence            88889999999999875

>KOG1665|consensus

Probab=99.65  E-value=1.2e-16  Score=143.10  Aligned_cols=115  Identities=21%  Similarity=0.375  Sum_probs=87.4

Q ss_pred             CCCceEEEEeCCeeeeecHHHh-ccCCCccccCccC-C-ccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCH
Q psy11394         29 DFCERVVINVSGLRFETQLRTL-NQFPETLLGDPAR-R-IRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPL  105 (391)
Q Consensus        29 ~~~~~v~lNVgG~~f~t~~~tl-~~~p~t~l~~~~~-~-~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~  105 (391)
                      ..+..|+|||||++|+|+.+|| -|.|+|||..+.. + ..-..++++.|+|||+|+.|++||||+|. |.+.+-.++..
T Consensus         6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~-Gq~~~~s~i~~   84 (302)
T KOG1665|consen    6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRD-GQIPSLSDIDC   84 (302)
T ss_pred             ChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhc-CceeecCCccH
Confidence            3456899999999999999999 7889999988753 2 22345678899999999999999999999 89988888888


Q ss_pred             HhHHHHHhcCCCcchhcchhhhccccccccCCCCCchHHH
Q psy11394        106 DVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQ  145 (391)
Q Consensus       106 ~~~~~E~~f~~l~~~~~e~~~~~e~~~~~~~~~~~~~~~r  145 (391)
                      ..++||++||+|-... +...+...+..+.+.|.++..+-
T Consensus        85 lgvLeeArff~i~sL~-~hle~~~~e~pe~~~pltR~dii  123 (302)
T KOG1665|consen   85 LGVLEEARFFQILSLK-DHLEDSRKEVPEVEAPLTRIDII  123 (302)
T ss_pred             HHHHHHhhHHhhHhHH-hHHhhhccCCCcCCCCccHHHHH
Confidence            8899999999996532 22222222334444555554433

>KOG2716|consensus

Probab=99.64  E-value=8.6e-17  Score=147.51  Aligned_cols=90  Identities=28%  Similarity=0.421  Sum_probs=75.8

Q ss_pred             CCceEEEEeCCeeeeecHHHhccCCCccccCcc-CCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCC-CHHh
Q psy11394         30 FCERVVINVSGLRFETQLRTLNQFPETLLGDPA-RRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV-PLDV  107 (391)
Q Consensus        30 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~-~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~-~~~~  107 (391)
                      .++.|+|||||+.|.|+++||+++ ++++..+. .+.+...++.+++||||+|++|..||||+|. |.+.+|++. ....
T Consensus         3 ~~~~vkLnvGG~~F~Tsk~TLtk~-dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRd-Gdv~LPe~~kel~E   80 (230)
T KOG2716|consen    3 MSETVKLNVGGTIFKTSKSTLTKF-DGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRD-GDVDLPESEKELKE   80 (230)
T ss_pred             ccceEEEecCCeEEEeehhhhhhh-hhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhc-ccccCccchHHHHH
Confidence            457899999999999999999995 56665442 3333456678899999999999999999999 788899887 7788


Q ss_pred             HHHHHhcCCCcchh
Q psy11394        108 FSEEIKFYELGDVA  121 (391)
Q Consensus       108 ~~~E~~f~~l~~~~  121 (391)
                      +++||+||.|+...
T Consensus        81 l~~EA~fYlL~~Lv   94 (230)
T KOG2716|consen   81 LLREAEFYLLDGLV   94 (230)
T ss_pred             HHHHHHHhhHHHHH
Confidence            99999999998865

>KOG3713|consensus

Probab=99.64  E-value=1.3e-16  Score=158.26  Aligned_cols=129  Identities=33%  Similarity=0.550  Sum_probs=95.7

Q ss_pred             CCCChhHhhhhhhhhhHHHHHHHHHHH------HH---------HH---------------H--------HHHHHHHHHH
Q psy11394        209 DITDPFFLIETFLIMPSLYCLLTSLLL------YS---------VV---------------M--------IYVHVLIPIL  250 (391)
Q Consensus       209 ~~~~~~~~ie~v~~~~F~~E~llRl~f------~~---------~~---------------~--------~iiDll~ilp  250 (391)
                      ...+++++||++.+++|.+|.++-..-      ..         +.               +        .-.--+..+.
T Consensus       270 F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLl  349 (477)
T KOG3713|consen  270 FFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLL  349 (477)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999997654330      00         00               0        1112245667


Q ss_pred             HHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhccccc
Q psy11394        251 MYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGK  330 (391)
Q Consensus       251 ~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~  330 (391)
                      .++.+++.++|+++|++|++.+++.|+|||.++|||++|||||||||++|.|..| ++.-                    
T Consensus       350 lfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~G-klva--------------------  408 (477)
T KOG3713|consen  350 LFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLG-KLVA--------------------  408 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccch-HHHH--------------------
Confidence            7778888899999999999999999999999999999999999999999999997 2222                    


Q ss_pred             ccCccchhhhhhhhhhhhhhhcccceeeeec
Q psy11394        331 SIPDAFWWAVVTMTTVGYGVVLFSSAVYFAE  361 (391)
Q Consensus       331 ~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E  361 (391)
                         ......+++.+.+.+-+++-.+..|+-+
T Consensus       409 ---s~cil~GVLvlAlPItiIv~nF~~~y~~  436 (477)
T KOG3713|consen  409 ---SLCILCGVLVLALPITIIVNNFSMYYSE  436 (477)
T ss_pred             ---HHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence               1223335566777777777666666653

>KOG2723|consensus

Probab=99.62  E-value=2.5e-16  Score=143.51  Aligned_cols=93  Identities=25%  Similarity=0.483  Sum_probs=82.9

Q ss_pred             CCCCceEEEEeCCeeeeecHHHhccCCCccccCccC-CccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCC-CH
Q psy11394         28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPAR-RIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV-PL  105 (391)
Q Consensus        28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~-~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~-~~  105 (391)
                      ....+.++|||||..|.|+.+||.++|+|+|+++.+ .....++..+-||||||+..|++||||+|+ .++..|++. ..
T Consensus         5 ~~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt-~~l~lpe~f~e~   83 (221)
T KOG2723|consen    5 SEYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRT-KALLLPEDFAEV   83 (221)
T ss_pred             cccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcc-cccccchhhhhH
Confidence            345689999999999999999999999999998866 555667788899999999999999999999 788999888 68


Q ss_pred             HhHHHHHhcCCCcchh
Q psy11394        106 DVFSEEIKFYELGDVA  121 (391)
Q Consensus       106 ~~~~~E~~f~~l~~~~  121 (391)
                      +.+.+||+||+++...
T Consensus        84 ~~L~rEA~f~~l~~~~   99 (221)
T KOG2723|consen   84 ERLVREAEFFQLEAPV   99 (221)
T ss_pred             HHHHHHHHHHccccHH
Confidence            8999999999999644

>KOG1545|consensus

Probab=99.61  E-value=2e-15  Score=143.78  Aligned_cols=96  Identities=43%  Similarity=0.689  Sum_probs=76.3

Q ss_pred             CCChhHhhhhhhhhhHHHHHH---------------------HHHH--------H--HH--HHHH--------HHHHHHH
Q psy11394        210 ITDPFFLIETFLIMPSLYCLL---------------------TSLL--------L--YS--VVMI--------YVHVLIP  248 (391)
Q Consensus       210 ~~~~~~~ie~v~~~~F~~E~l---------------------lRl~--------f--~~--~~~~--------iiDll~i  248 (391)
                      +++.+++||++.++.+.+-+.                     +|.+        |  .+  +.+.        -+--+.+
T Consensus       284 f~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgL  363 (507)
T KOG1545|consen  284 FRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGL  363 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHH
Confidence            457889999999988876552                     3332        0  00  1122        2234567


Q ss_pred             HHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394        249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       249 lp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      +-+++.++++++|+.+|++|.+.++++|+|||++|||+++|||||||||++|+++.|
T Consensus       364 LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgG  420 (507)
T KOG1545|consen  364 LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGG  420 (507)
T ss_pred             HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCc
Confidence            777888888899999999999999999999999999999999999999999999986

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.45  E-value=1.8e-14  Score=157.81  Aligned_cols=179  Identities=15%  Similarity=0.214  Sum_probs=106.2

Q ss_pred             hccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHH
Q psy11394        152 FEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLT  231 (391)
Q Consensus       152 le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~ll  231 (391)
                      .-+|.++.. ++++.+++++++.+++..-++..  +..                  ......+.++|.++.++|.+|+++
T Consensus        53 ii~P~~~~~-~~Wd~~~~~~~~y~~~~~p~~~~--F~~------------------~~~~~~~~~~d~i~~~~F~iDi~l  111 (823)
T PLN03192         53 IISPMDSRY-RWWETLMVVLVAYSAWVYPFEVA--FLN------------------ASPKRGLEIADNVVDLFFAVDIVL  111 (823)
T ss_pred             EECCCCcHH-HHHHHHHHHHHHHHHHHHHHHHH--eeC------------------CCCCCCeeeHHHHHHHHHHHHHHh
Confidence            456764443 67888888888888777655432  111                  011224678999999999999999


Q ss_pred             HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEE
Q psy11394        232 SLL---------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTM  290 (391)
Q Consensus       232 Rl~---------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~  290 (391)
                      ||+                     |++. |.++|+++++|+.+...+...                 ......       
T Consensus       112 ~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~-----------------~~~~~~-------  166 (823)
T PLN03192        112 TFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITG-----------------TVKLNL-------  166 (823)
T ss_pred             heeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcC-----------------CccchH-------
Confidence            986                     5544 789999999999755422100                 000000       


Q ss_pred             EEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCcc--chhhhhhhhhhhhhhhcccceeeeeccCC---C
Q psy11394        291 TTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDA--FWWAVVTMTTVGYGVVLFSSAVYFAEAGS---E  365 (391)
Q Consensus       291 TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s--~~~l~~~~~~l~i~i~~~a~~~y~~E~~~---~  365 (391)
                         .   .+.++++  |++|+.|..+.+ +      .+.+.+..+  ...+..+++++++++.++||++|.+....   +
T Consensus       167 ---~---~~~l~ll--rl~Rl~ri~~~~-~------~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~  231 (823)
T PLN03192        167 ---S---YSLLGLL--RFWRLRRVKQLF-T------RLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQG  231 (823)
T ss_pred             ---H---HHHHHHH--HHHHHHHHHHHH-H------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence               0   2233444  444444443333 3      122112111  12334445556667788888888765321   1


Q ss_pred             CC-------------CCCCcchhhhhhhhhhcccccCCC
Q psy11394        366 NS-------------FFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       366 ~~-------------~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .+             .+..|..|+||+++|||||||||+
T Consensus       232 ~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi  270 (823)
T PLN03192        232 KTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDL  270 (823)
T ss_pred             CchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCc
Confidence            11             122367799999999999999996

>KOG0498|consensus

Probab=99.01  E-value=9.8e-11  Score=123.73  Aligned_cols=197  Identities=14%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             hccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHH
Q psy11394        152 FEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLT  231 (391)
Q Consensus       152 le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~ll  231 (391)
                      .-+|. |+.-+.++.+++++.+.++++-=++-.-....        +...+   .+.....++.+++++..++|.+++++
T Consensus        69 Ii~P~-s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~--------~~~~~---~d~~~~~~l~v~d~ivD~fflvdIvL  136 (727)
T KOG0498|consen   69 ILDPY-SPFYRVWNKFFLLLVIYAAFVDPLFFYFLLID--------DERKC---IDGKLAAPLTVLDTIVDIFFLVDIVL  136 (727)
T ss_pred             eECCC-ChHHHHHHHHHHHHHHHHHHhccceeeEEecc--------ccccc---ccccccCceeeHHHHHHHHHHHHHHH
Confidence            34665 44556677777776666655432222110000        00011   22345677889999999999999999


Q ss_pred             HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEE
Q psy11394        232 SLL---------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTM  290 (391)
Q Consensus       232 Rl~---------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~  290 (391)
                      +|.                     |++ .|.+||+++++|+-..++...       .....               ...-
T Consensus       137 ~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~~~i~~~~~-------~~~~~---------------~~~~  193 (727)
T KOG0498|consen  137 NFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPFDQIVVLVV-------IGSTS---------------LALE  193 (727)
T ss_pred             hheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcChhhheeeee-------ecccc---------------hhhh
Confidence            986                     666 589999999999765442110       00000               0111


Q ss_pred             EEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCC-----
Q psy11394        291 TTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSE-----  365 (391)
Q Consensus       291 TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~-----  365 (391)
                      ++.+++-+...|+.  |+.|+.+..+.+ .++     .+......+...+..+++.+++..+.|++.|.+-...+     
T Consensus       194 ~~~l~~il~~~rL~--Rl~Rv~~l~~r~-~k~-----~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~  265 (727)
T KOG0498|consen  194 STILVGILLLQRLP--RLRRVIPLFARL-EKD-----TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPR  265 (727)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHH-HHH-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            12233335555555  555655555555 311     11111112233446667777778899999998732111     


Q ss_pred             ----CC---------C----CC------CcchhhhhhhhhhcccccCCC
Q psy11394        366 ----NS---------F----FK------SIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       366 ----~~---------~----f~------s~~~alywaivT~tTVGYGDi  391 (391)
                          ..         +    |.      .|..|+||++.|||||||||.
T Consensus       266 ~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~  314 (727)
T KOG0498|consen  266 KATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV  314 (727)
T ss_pred             ccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc
Confidence                00         1    22      267899999999999999985

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.96  E-value=1e-11  Score=111.17  Aligned_cols=141  Identities=14%  Similarity=0.186  Sum_probs=94.1

Q ss_pred             hhhhhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeE
Q psy11394        216 LIETFLIMPSLYCLLTSLL--------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAV  287 (391)
Q Consensus       216 ~ie~v~~~~F~~E~llRl~--------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~i  287 (391)
                      ++|.++.++|++|.++|++        |++++||++|+++++|..+..+.....          ..+.      ..   .
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~----------~~~~------~~---~   61 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYG----------SASA------QS---L   61 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS------------HH------CH---C
T ss_pred             CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccc----------cccc------cc---e
Confidence            5799999999999999998        677899999999999997666422110          0000      00   0


Q ss_pred             EEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCC---
Q psy11394        288 VTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGS---  364 (391)
Q Consensus       288 it~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~---  364 (391)
                      .++       .+.+|.+  |++|+.|..+.+ +      .+..++....+.+......++++++.++++.+.+-++.   
T Consensus        62 ~~~-------~~~l~~~--R~l~~~~~~~~~-~------~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~  125 (200)
T PF00520_consen   62 LRI-------FRLLRLL--RLLRLLRRFRSL-R------RLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNS  125 (200)
T ss_dssp             HHH-------HHHHHHH--HHHHHHHTTTSH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS--
T ss_pred             EEE-------EEeeccc--cccccccccccc-c------ccccccccccccccccccccccccccccchhheeccccccc
Confidence            011       4444445  555555555545 3      44444555666666666666666677777666553222   


Q ss_pred             -------------CCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        365 -------------ENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       365 -------------~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                                   +..+|++++.|+||++.++||.||||+
T Consensus       126 ~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~  165 (200)
T PF00520_consen  126 CCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDV  165 (200)
T ss_dssp             -----SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccCCcccc
Confidence                         235778999999999999999999985

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG1420|consensus

Probab=98.95  E-value=8.1e-11  Score=118.14  Aligned_cols=138  Identities=15%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             CCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCccccc
Q psy11394        208 PDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIP  280 (391)
Q Consensus       208 ~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~  280 (391)
                      ++..+.-..||..+.++|.+-+.+||+       |+...+.++|+..+.|.++.+         |. .            
T Consensus       158 ~w~~~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsi---------yl-~------------  215 (1103)
T KOG1420|consen  158 NWYKDFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSI---------YL-N------------  215 (1103)
T ss_pred             hhhhChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEE---------Ee-c------------
Confidence            345555678999999999999999998       777888999999999987543         21 1            


Q ss_pred             ccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeee
Q psy11394        281 DAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFA  360 (391)
Q Consensus       281 ~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~  360 (391)
                       -.|        +|   +|.+|.+  |++.+-.....+ +      .+. + ..+ ..+..++.+..-..+..++++..+
T Consensus       216 -r~w--------lg---lrflral--rlmtvpdilqyl-n------ilk-t-sss-irl~qlvsifisvwltaag~ihll  271 (1103)
T KOG1420|consen  216 -RSW--------LG---LRFLRAL--RLMTVPDILQYL-N------ILK-T-SSS-IRLVQLVSIFISVWLTAAGFIHLL  271 (1103)
T ss_pred             -cch--------HH---HHHHHHH--HhccHHHHHHHH-H------HHh-c-cch-hhHHHHHHHHHHHHHhhcceeehh
Confidence             112        22   4555555  555544443333 3      221 1 122 233333333333345567788888


Q ss_pred             ccCC-CCCCC-----CCcchhhhhhhhhhcccccCCC
Q psy11394        361 EAGS-ENSFF-----KSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       361 E~~~-~~~~f-----~s~~~alywaivT~tTVGYGDi  391 (391)
                      |... +.++|     -+|.++.|+.+|||+||||||+
T Consensus       272 ensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdv  308 (1103)
T KOG1420|consen  272 ENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDV  308 (1103)
T ss_pred             hcCCChhHhccCcccchhhheeeeeEEEeeeccccce
Confidence            8643 33344     4689999999999999999996

>KOG4390|consensus

Probab=98.93  E-value=2.2e-10  Score=110.52  Aligned_cols=64  Identities=39%  Similarity=0.759  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394        245 VLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF  309 (391)
Q Consensus       245 ll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril  309 (391)
                      -+-.+.+.+.+.++++.+.+||+|+++..++|+|||.+||+.|+||||+||||+.|.++.| +|+
T Consensus       323 ELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaG-KIf  386 (632)
T KOG4390|consen  323 ELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAG-KIF  386 (632)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHH-HHh
Confidence            3455666777778888899999999999999999999999999999999999999999997 443

>KOG2301|consensus

Probab=98.90  E-value=6.3e-11  Score=133.96  Aligned_cols=190  Identities=11%  Similarity=0.117  Sum_probs=140.9

Q ss_pred             CCchHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhh
Q psy11394        139 LPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIE  218 (391)
Q Consensus       139 ~~~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie  218 (391)
                      .+.++.|.++|++...+       .|+++++++|+++.+.++++++++...                    +..++.++.
T Consensus      1141 r~~~~~q~~~~~~v~~~-------~F~~~i~~li~ln~i~l~~~~~~qs~~--------------------~~~~l~~in 1193 (1592)
T KOG2301|consen 1141 RPRNKLQGLVFDLVTSQ-------AFDYLIMLLIFLNTIIMMVETYDQSDT--------------------YTAILTILN 1193 (1592)
T ss_pred             CCcchhhhHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhhccchHH--------------------HHHHHHHHH
Confidence            34566999999999753       399999999999999999999876554                    445788999


Q ss_pred             hhhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEE
Q psy11394        219 TFLIMPSLYCLLTSLL------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTT  292 (391)
Q Consensus       219 ~v~~~~F~~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TT  292 (391)
                      .+++.+|++|.++|++      |++++||++|++.++..++..++...-..            +.+-+     ...++  
T Consensus      1194 ~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~------------~~~~~-----~~~~~-- 1254 (1592)
T KOG2301|consen 1194 AVFIVLFTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK------------YESSP-----TLLRF-- 1254 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh------------hccch-----hhHHH--
Confidence            9999999999999998      89999999999998888887766443110            00001     12233  


Q ss_pred             eecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeee------ccCCCC
Q psy11394        293 VGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFA------EAGSEN  366 (391)
Q Consensus       293 vGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~------E~~~~~  366 (391)
                           .|.+|++  |++|+++..+++ +      .|..++..|.+.+..+.+.++++++++|.+...+      +.-...
T Consensus      1255 -----~rl~rV~--R~l~Li~~~~~i-r------~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~ 1320 (1592)
T KOG2301|consen 1255 -----LRLFRVG--RFLRLIPQAKTI-R------TLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLGGINDH 1320 (1592)
T ss_pred             -----HHHHHHH--HHHHhccccchh-H------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheeccccCCC
Confidence                 7888998  999999999999 8      8888888898888766666666666655533322      212245


Q ss_pred             CCCCCcchhhhhhhhhhccccc
Q psy11394        367 SFFKSIPDAFWWAVVTMTTVGY  388 (391)
Q Consensus       367 ~~f~s~~~alywaivT~tTVGY  388 (391)
                      .||.+++.|+=--+...|.-|+
T Consensus      1321 ~NF~tf~~a~i~LFr~~Tge~W 1342 (1592)
T KOG2301|consen 1321 NNFRTFPNSMVVLFRCATGEGW 1342 (1592)
T ss_pred             cccccchhheeeeeehhhhhhH
Confidence            6899999987654444444444

>KOG2302|consensus

Probab=98.67  E-value=3.3e-09  Score=111.90  Aligned_cols=174  Identities=12%  Similarity=0.077  Sum_probs=125.7

Q ss_pred             hhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH------H
Q psy11394        162 RVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------L  235 (391)
Q Consensus       162 ~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~------f  235 (391)
                      .....++.++|.++++.+..|.+.+.+.                    +..++.+-++.+.+.|..|.+++++      |
T Consensus      1441 hyld~fit~ii~LnvVtms~ehyqqp~s--------------------ldealkycny~ft~vfV~EaV~klvafG~rrF 1500 (1956)
T KOG2302|consen 1441 HYLDQFITFIICLNVVTMSEEHYQQPTS--------------------LDEALKYCNYRFTAVFVLEAVLKLVAFGERRF 1500 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccc--------------------HHHHhhhcceeeeehhHHHHHHHHHHHhHHHH
Confidence            4577889999999999999998765543                    5567788899999999999999998      9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHH
Q psy11394        236 YSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR  315 (391)
Q Consensus       236 ~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~  315 (391)
                      +++.||-+|+.+++...+++-+.-          -.-+....-.|     .|+++       +|.+|+.  |++||+++.
T Consensus      1501 fkdrwnqldlaivlls~mgitlee----------ie~naalpinp-----tiiri-------mrvlria--rvlkllkma 1556 (1956)
T KOG2302|consen 1501 FKDRWNQLDLAIVLLSVMGITLEE----------IEINAALPINP-----TIIRI-------MRVLRIA--RVLKLLKMA 1556 (1956)
T ss_pred             HhhhhhhhhHHHHHHHHhcccHhh----------eeecccCCCCh-----HHHHH-------HHHHHHH--HHHHHHHHH
Confidence            999999999999888877664321          11111111112     25566       8888888  999999999


Q ss_pred             HHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeee----eccCCC--------CCCCCCcchhhhhhhhhh
Q psy11394        316 KFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYF----AEAGSE--------NSFFKSIPDAFWWAVVTM  383 (391)
Q Consensus       316 ~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~----~E~~~~--------~~~f~s~~~alywaivT~  383 (391)
                      .++ +      .+..++.+..++++.+.++.+++.++++.+..-    +|.+..        ...|.+|+.    |+.|+
T Consensus      1557 tgm-r------alldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgm----afltl 1625 (1956)
T KOG2302|consen 1557 TGM-R------ALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGM----AFLTL 1625 (1956)
T ss_pred             HHH-H------HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhch----Hhhhh
Confidence            999 8      888888888888776655555555555544322    233221        236666665    56788


Q ss_pred             cccccCC
Q psy11394        384 TTVGYGD  390 (391)
Q Consensus       384 tTVGYGD  390 (391)
                      ..|..||
T Consensus      1626 frvstgd 1632 (1956)
T KOG2302|consen 1626 FRVSTGD 1632 (1956)
T ss_pred             eeeccCC
Confidence            8888887

>KOG4404|consensus

Probab=98.63  E-value=2.4e-08  Score=94.84  Aligned_cols=105  Identities=26%  Similarity=0.457  Sum_probs=67.5

Q ss_pred             cccccceeeEEEEEEeecccceecccccceeeeehh------------------HHHHH---HHHhhhhcccccccCccc
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSR------------------LRKFL---LQEYSRCFLVGKSIPDAF  336 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r------------------~~~~l---~~~~~~~~~l~~~l~~s~  336 (391)
                      ..+.+||++..-+||+|||-..|.|..| |+|...-                  ....+   ++...+. ...+--..+.
T Consensus        80 kF~GaFYFa~TVItTIGyGhstP~T~~G-K~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~-~~~r~~~~S~  157 (350)
T KOG4404|consen   80 KFAGAFYFATTVITTIGYGHSTPSTDGG-KAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRR-LGRRRWDVSV  157 (350)
T ss_pred             ccCcceEEEEEEEeeeccCCCCCCCcCc-eehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCCcH
Confidence            4578999999999999999999999998 8875511                  11111   1100000 0011122334


Q ss_pred             hhhhhhhhhhhhhhhcccceeee-eccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        337 WWAVVTMTTVGYGVVLFSSAVYF-AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       337 ~~l~~~~~~l~i~i~~~a~~~y~-~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ..+.++.+...+++++.+..+|. +|+      + +|.||+||.+||+||+|+||.
T Consensus       158 ~~l~~i~~~~~~~~i~~gaa~fs~~E~------W-syfds~YyCFITltTIGFGDy  206 (350)
T KOG4404|consen  158 YNLVLILFTACILLICCGAAMFSSVEG------W-SYFDSYYYCFITLTTIGFGDY  206 (350)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhcccC------c-chhhhhheeeeeeeeccccch
Confidence            45555555555555666666664 342      2 677999999999999999994

>KOG1419|consensus

Probab=98.62  E-value=3.7e-09  Score=106.27  Aligned_cols=94  Identities=26%  Similarity=0.418  Sum_probs=68.7

Q ss_pred             HHHHHHHHH-HHhhhceEEEEeeCC----CCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHh
Q psy11394        248 PILMYIFAG-VVLFSSTVYFAEAGS----DQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEY  322 (391)
Q Consensus       248 ilp~~~~~~-~~~~~~~~y~~e~~~----~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~  322 (391)
                      +...|++++ ++.+|.++|.+|+++    .+..|.+.-+++||.++|+||+||||..|.+++| |+              
T Consensus       234 iTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlG-r~--------------  298 (654)
T KOG1419|consen  234 ITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLG-RL--------------  298 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchh-HH--------------
Confidence            344556554 445566999999984    4567999999999999999999999999999996 22              


Q ss_pred             hhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCC
Q psy11394        323 SRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSE  365 (391)
Q Consensus       323 ~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~  365 (391)
                               +.+....+++.++.+...++..++..-+-|++.+
T Consensus       299 ---------laa~fsligiSFFALPAGILGSGfALKVQeq~RQ  332 (654)
T KOG1419|consen  299 ---------LAACFSLIGISFFALPAGILGSGFALKVQEQHRQ  332 (654)
T ss_pred             ---------HHHHHHHHHHHHHhcccccccchhhhhhHHHHHH
Confidence                     2223344566677777777777766666666554

>KOG2302|consensus

Probab=98.61  E-value=1.1e-08  Score=107.92  Aligned_cols=145  Identities=12%  Similarity=0.020  Sum_probs=95.7

Q ss_pred             hhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhh-hhhhhhhHHHHHHHHHH-----
Q psy11394        161 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLI-ETFLIMPSLYCLLTSLL-----  234 (391)
Q Consensus       161 a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-e~v~~~~F~~E~llRl~-----  234 (391)
                      .+.|+.++.++|.+|++..++|+...-..                   .....|..+ ++++.++|.+|+.++++     
T Consensus      1123 hk~Fd~vVl~~IfLNcVtialerp~i~~~-------------------s~EriFltlsnyIFtaIfV~Em~lKVVALGl~ 1183 (1956)
T KOG2302|consen 1123 HKAFDTVVLFFIFLNCVTIALERPAIVEG-------------------STERIFLTLSNYIFTAIFVVEMTLKVVALGLY 1183 (1956)
T ss_pred             HhhhhheehhhhhhhhHHHHhcccccccC-------------------cceEEEEEecchHHHHHHHHHHHHHHHhhhhc
Confidence            56899999999999999999998543222                   122233344 48999999999999987     


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394        235 -----LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF  309 (391)
Q Consensus       235 -----f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril  309 (391)
                           |+++.||.+|.+.++...+.+++.+.+..           .+ .|     ..+.+.       +|.+|.+  |.+
T Consensus      1184 fge~aYl~ssWN~LDgflv~vsviDilvs~asa~-----------g~-kI-----LgVlrv-------LRlLRtl--RpL 1237 (1956)
T KOG2302|consen 1184 FGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAG-----------GA-KI-----LGVLRV-------LRLLRTL--RPL 1237 (1956)
T ss_pred             cchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-----------hH-HH-----HHHHHH-------HHHHHHh--hHH
Confidence                 99999999999988888888776553210           00 00     001111       3333333  445


Q ss_pred             eehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhccccee
Q psy11394        310 CRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAV  357 (391)
Q Consensus       310 kL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~  357 (391)
                      |.+....++ +      ....++..+.+.++.++++...++++|+.+.
T Consensus      1238 RviSra~gl-k------lVveTL~sSLkpIgnIvliccaffiiFgilg 1278 (1956)
T KOG2302|consen 1238 RVISRAPGL-K------LVVETLISSLKPIGNIVLICCAFFIIFGILG 1278 (1956)
T ss_pred             HHHhhcccH-H------HHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            555555555 5      5556677788888777666666666666543

>KOG2301|consensus

Probab=98.59  E-value=5.9e-09  Score=118.31  Aligned_cols=176  Identities=13%  Similarity=0.043  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhh
Q psy11394        142 HEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFL  221 (391)
Q Consensus       142 ~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~  221 (391)
                      .++|+.+..++-+|.       +.+++.++++++++.+..++++..+.                    +...+.+.+.++
T Consensus       430 ~~~~~~~~~~v~~~~-------~~~~i~i~i~lnt~~~a~eh~~~~~~--------------------~~~~l~~~~~vF  482 (1592)
T KOG2301|consen  430 LKFKQWLRKMVFDPF-------VILFITICIALNTLFMAMEHYEMTKA--------------------RNYLLYLGNVVF  482 (1592)
T ss_pred             HHHHHHHHHhhhcce-------ehhhhHHHHhhcccEEEEEEeCCcHH--------------------HHHHHHHHHHHH
Confidence            445556666666654       88899999999999999999876553                    456778999999


Q ss_pred             hhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeec
Q psy11394        222 IMPSLYCLLTSLL------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGY  295 (391)
Q Consensus       222 ~~~F~~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGy  295 (391)
                      ...|+.|+.++.+      |+.+.+|++|.+.+..-.+...                                .++-.|+
T Consensus       483 ~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~--------------------------------~~~~~g~  530 (1592)
T KOG2301|consen  483 TGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL--------------------------------LKNVYGL  530 (1592)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc--------------------------------ccchHHH
Confidence            9999999999998      8999999999877761111110                                2334466


Q ss_pred             ccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeec-cCCCCC-----CC
Q psy11394        296 GDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAE-AGSENS-----FF  369 (391)
Q Consensus       296 gd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E-~~~~~~-----~f  369 (391)
                      +-+|.+|++  |++|+.+++..+ +      .+.+.+.++...++.+.++++++++++|.+.+..- +..+..     +|
T Consensus       531 svLr~frll--RIfkl~k~wp~l-~------~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~  601 (1592)
T KOG2301|consen  531 SVLRSFRLL--RIFKLIKSWPTL-N------DLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHF  601 (1592)
T ss_pred             HHHHHHHHH--HHHHHHHhhHHH-H------HHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccch
Confidence            669999999  999999999999 8      89999999999999999999999999998776553 333333     78


Q ss_pred             CCcchhhhhhhhhhccc
Q psy11394        370 KSIPDAFWWAVVTMTTV  386 (391)
Q Consensus       370 ~s~~~alywaivT~tTV  386 (391)
                      .+++.|+-+... +|+=
T Consensus       602 ~~fp~sfl~vFq-lt~e  617 (1592)
T KOG2301|consen  602 TDFPHSFLSVFQ-ITCE  617 (1592)
T ss_pred             hhCHHHHHHHHH-HcCC
Confidence            889999988887 5543

>KOG0501|consensus

Probab=98.53  E-value=5.6e-08  Score=98.33  Aligned_cols=136  Identities=13%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             hhHhhhhhhhhhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCC
Q psy11394        213 PFFLIETFLIMPSLYCLLTSLL--------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSD  272 (391)
Q Consensus       213 ~~~~ie~v~~~~F~~E~llRl~--------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~  272 (391)
                      .+..+|.+..++|.++++++|-                    |+|+ |.+||+++-+|+-+.-.+          |+.  
T Consensus       250 s~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF----------~~~--  316 (971)
T KOG0501|consen  250 SWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAF----------ERD--  316 (971)
T ss_pred             eEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHh----------hcc--
Confidence            4568899999999999998875                    7777 889999999999876543          322  


Q ss_pred             CCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhc
Q psy11394        273 QSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVL  352 (391)
Q Consensus       273 ~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~  352 (391)
                      ++.+.|+                  +-.+.+.  |++||-|..+.+ ..         -+.-....+.+++.+..++..|
T Consensus       317 degI~SL------------------FSaLKVV--RLLRLGRVaRKL-D~---------YlEYGAA~LvLLlC~y~lvAHW  366 (971)
T KOG0501|consen  317 DEGIGSL------------------FSALKVV--RLLRLGRVARKL-DH---------YLEYGAAVLVLLLCVYGLVAHW  366 (971)
T ss_pred             cccHHHH------------------HHHHHHH--HHHHHHHHHHHH-HH---------HHHhhHHHHHHHHHHHHHHHHH
Confidence            2223332                  2223444  566666666555 32         2222334455555566666788


Q ss_pred             ccceeeeeccCC---------C-----------------------------CCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        353 FSSAVYFAEAGS---------E-----------------------------NSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       353 ~a~~~y~~E~~~---------~-----------------------------~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .||++|.+..-.         +                             ++.=.-|..|+||++..|||||+|+|
T Consensus       367 lACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNi  443 (971)
T KOG0501|consen  367 LACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNI  443 (971)
T ss_pred             HHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhccccccc
Confidence            899999884311         0                             11112388999999999999999986

>KOG3840|consensus

Probab=98.35  E-value=4.3e-07  Score=85.56  Aligned_cols=92  Identities=27%  Similarity=0.346  Sum_probs=75.4

Q ss_pred             CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCc-cCC-CCCCceeeec--CCCCChHHHHhhhhcCCeeecCCCC
Q psy11394         28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRI-RYF-DPLRNEYFFD--RNRPSFDAILYYYQSGGRLRRPVNV  103 (391)
Q Consensus        28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~-~~~-~~~~~e~f~D--R~~~~F~~Il~y~r~~g~l~~p~~~  103 (391)
                      ....+++.+-|.|+||..+++.|+..|.|+++++.... ++. ..+++||=..  -...+|+.||+||++ |.+.||+.+
T Consensus        92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYks-G~iRCP~~v  170 (438)
T KOG3840|consen   92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQS-GTMRCPSSV  170 (438)
T ss_pred             CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhc-CceeCCCCC
Confidence            34557999999999999999999999999999886432 222 3466776552  246789999999999 899999999


Q ss_pred             CHHhHHHHHhcCCCcch
Q psy11394        104 PLDVFSEEIKFYELGDV  120 (391)
Q Consensus       104 ~~~~~~~E~~f~~l~~~  120 (391)
                      .+..++|.++|--++-+
T Consensus       171 SvpELrEACDYLlipF~  187 (438)
T KOG3840|consen  171 SVSELREACDYLLVPFN  187 (438)
T ss_pred             chHHHHhhcceEEeecc
Confidence            99999999999877654

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=98.27  E-value=2.2e-07  Score=72.01  Aligned_cols=40  Identities=40%  Similarity=0.656  Sum_probs=25.6

Q ss_pred             hhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       349 ~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .++.++.+.+..+++   ..-.++.||+||+++|+|||||||+
T Consensus         5 ~~l~~~~~~~~~~~~---~~~~~~~da~yfs~~t~tTvGyGDi   44 (79)
T PF07885_consen    5 LVLAFGAIFFYISEG---SEKWSFIDALYFSFVTITTVGYGDI   44 (79)
T ss_dssp             HHHHHHHHHHHHTTS---SSTTSHHHHHHHHHHHHTT---SSS
T ss_pred             eeeHHHHHHHHHHHh---cccCCHHHHHHHHHHHHhcccCCCc
Confidence            334445555544322   2347899999999999999999996

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1418|consensus

Probab=98.24  E-value=1.5e-07  Score=94.65  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=32.0

Q ss_pred             cccccccceeeEEEEEEeecccceecccccceeeeeh
Q psy11394        276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRS  312 (391)
Q Consensus       276 f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~  312 (391)
                      --+++++++++...+||+|||++.|.+..| |++-.+
T Consensus       113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~G-r~~~i~  148 (433)
T KOG1418|consen  113 QWSFSSALLFSITVITTIGYGNIAPRTDAG-RLFTIL  148 (433)
T ss_pred             ceecchhHhhhhheeeeccCCcccCCcCcc-hhHHHH
Confidence            347889999999999999999999999998 887664

>KOG0500|consensus

Probab=98.16  E-value=9.8e-07  Score=88.23  Aligned_cols=131  Identities=10%  Similarity=0.074  Sum_probs=88.8

Q ss_pred             ChhHhhhhhhhhhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCC
Q psy11394        212 DPFFLIETFLIMPSLYCLLTSLL-------------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSD  272 (391)
Q Consensus       212 ~~~~~ie~v~~~~F~~E~llRl~-------------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~  272 (391)
                      ..+..+|+++.+.|.++.++|.-                   |+.+..-.+|+++++|.-...+...             
T Consensus        29 ~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~-------------   95 (536)
T KOG0500|consen   29 ENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG-------------   95 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC-------------
Confidence            44678999999999999998864                   6777778999999999876553210             


Q ss_pred             CCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhc
Q psy11394        273 QSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVL  352 (391)
Q Consensus       273 ~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~  352 (391)
                              .                .-+.|+.  |++|+.|.+.-+-+      .-.++-......+..++..+++++.|
T Consensus        96 --------~----------------~~~~r~n--Rllk~yRl~~F~~r------TetrT~~Pn~fri~~lv~~~~ilfHW  143 (536)
T KOG0500|consen   96 --------S----------------ASLERLN--RLLKIYRLFEFFDR------TETRTTYPNAFRISKLVHYCLILFHW  143 (536)
T ss_pred             --------c----------------chHHHHH--HHHHHHHHHHHHHH------hccccCCchHHHHHHHHHHHHHHHHH
Confidence                    0                2233455  66666666555522      33334444445556667777888899


Q ss_pred             ccceeeeeccCC------------CCCCCC---------Ccchhhhhhhhhhcccc
Q psy11394        353 FSSAVYFAEAGS------------ENSFFK---------SIPDAFWWAVVTMTTVG  387 (391)
Q Consensus       353 ~a~~~y~~E~~~------------~~~~f~---------s~~~alywaivT~tTVG  387 (391)
                      .||+.|.+-...            .+..|.         .|.-|+||+..|+||+|
T Consensus       144 NaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG  199 (536)
T KOG0500|consen  144 NACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG  199 (536)
T ss_pred             hhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc
Confidence            999888773211            122222         36779999999999998

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=97.97  E-value=5.7e-06  Score=63.82  Aligned_cols=84  Identities=17%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHHh
Q psy11394         34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIK  113 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~~  113 (391)
                      ++++|||+.|.+.+..|.+.+..+-....... .-.+...-.+.|++++.|+.+|+|+++ |++..+.+ ....+.+.|+
T Consensus         2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~-~~~~~~~i~l~~~~~~~f~~~l~~ly~-~~~~~~~~-~~~~l~~~a~   78 (90)
T smart00225        2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDF-KESKKSEIYLDDVSPEDFRALLEFLYT-GKLDLPEE-NVEELLELAD   78 (90)
T ss_pred             eEEEECCEEEehHHHHHhhcCHHHHHHHcCCC-ccCCCCEEEecCCCHHHHHHHHHeecC-ceeecCHH-HHHHHHHHHH
Confidence            56999999999999999888644332211111 101223334558999999999999999 78887776 6677899999


Q ss_pred             cCCCcch
Q psy11394        114 FYELGDV  120 (391)
Q Consensus       114 f~~l~~~  120 (391)
                      ||++++.
T Consensus        79 ~~~~~~l   85 (90)
T smart00225       79 YLQIPGL   85 (90)
T ss_pred             HHCcHHH
Confidence            9999764

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=97.94  E-value=5.4e-06  Score=83.39  Aligned_cols=43  Identities=33%  Similarity=0.689  Sum_probs=30.9

Q ss_pred             hhhhcccce-eeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        348 YGVVLFSSA-VYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       348 i~i~~~a~~-~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ..++.++.+ .+++|.+.+ ..+.++.+|+||+++|+|||||||+
T Consensus       145 ~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi  188 (393)
T PRK10537        145 TSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDI  188 (393)
T ss_pred             HHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCC
Confidence            334444444 345554333 3568999999999999999999996

>PRK10537 voltage-gated potassium channel; Provisional

Probab=97.12  E-value=0.00049  Score=69.37  Aligned_cols=40  Identities=35%  Similarity=0.544  Sum_probs=33.6

Q ss_pred             CCcccccccceeeEEEEEEeecccceecccccceeeeehhH
Q psy11394        274 SFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRL  314 (391)
Q Consensus       274 ~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~  314 (391)
                      ..+.++.+++||+++|+|||||||+.|.+..| |++-..-.
T Consensus       164 ~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~g-rl~~i~~i  203 (393)
T PRK10537        164 PPIESLSTAFYFSIVTMSTVGYGDIVPVSESA-RLFTISVI  203 (393)
T ss_pred             cCCCCHHHHHHhhheeeecccCCCCCCCCHHH-HHHHHHHH
Confidence            35679999999999999999999999999876 77655443

>KOG0499|consensus

Probab=96.74  E-value=0.0018  Score=66.53  Aligned_cols=131  Identities=13%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             ChhHhhhhhhhhhHHHHHHH-----HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCC
Q psy11394        212 DPFFLIETFLIMPSLYCLLT-----SLL---------------LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGS  271 (391)
Q Consensus       212 ~~~~~ie~v~~~~F~~E~ll-----Rl~---------------f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~  271 (391)
                      +.|.+.|++|.+++.+++++     ++.               |.++.-.-+|+++++|+-+..+...+           
T Consensus       261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~-----------  329 (815)
T KOG0499|consen  261 HYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF-----------  329 (815)
T ss_pred             hhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc-----------
Confidence            55789999999999999873     222               77776778999999998766643210           


Q ss_pred             CCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCcc-chhhhhhhhhhhhhh
Q psy11394        272 DQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDA-FWWAVVTMTTVGYGV  350 (391)
Q Consensus       272 ~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s-~~~l~~~~~~l~i~i  350 (391)
                                                .-..|+-  |+||....+... +      .|...+.+. ...++.....++..+
T Consensus       330 --------------------------~p~wR~~--R~lK~~sF~e~~-~------~Le~i~s~~y~~RV~rT~~Ymlyil  374 (815)
T KOG0499|consen  330 --------------------------NPMWRAN--RMLKYTSFFEFN-H------HLESIMSKAYIYRVIRTTGYLLYIL  374 (815)
T ss_pred             --------------------------chhhhhh--hHHHHHHHHHHH-H------HHHHHhcchhhhhhHHHHHHHHHHH
Confidence                                      1122555  666666555444 3      333333322 233344455555566


Q ss_pred             hcccceeeeecc--CC--C----CCCCCCcchhhhhhhhhhccccc
Q psy11394        351 VLFSSAVYFAEA--GS--E----NSFFKSIPDAFWWAVVTMTTVGY  388 (391)
Q Consensus       351 ~~~a~~~y~~E~--~~--~----~~~f~s~~~alywaivT~tTVGY  388 (391)
                      .+-|++-|..-.  +-  +    +..=..|..++|||+-|+||+|-
T Consensus       375 HinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~  420 (815)
T KOG0499|consen  375 HINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGG  420 (815)
T ss_pred             hhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcC
Confidence            777776665421  11  1    11225688999999999999993

>PLN03223 Polycystin cation channel protein; Provisional

Probab=96.66  E-value=0.00037  Score=77.41  Aligned_cols=75  Identities=8%  Similarity=-0.099  Sum_probs=57.2

Q ss_pred             ceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhh
Q psy11394        298 MRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFW  377 (391)
Q Consensus       298 ~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~aly  377 (391)
                      ...++++  |++|++|..+.+ +      .+..++..+...++.++++++++++.|+.+.+.+-+.. ...|.++..|++
T Consensus      1298 lIFLsiL--KfLRLLRFNPrL-~------vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~-ve~FSTf~sSL~ 1367 (1634)
T PLN03223       1298 NIILLLG--RILKLMDFQPRL-G------VITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNA-SVHFSDMTDSIN 1367 (1634)
T ss_pred             HHHHHHH--HHHHHhccChhH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhcCHHHHHH
Confidence            4567778  899999998888 7      78888999999998888888888888877666665433 448888888777


Q ss_pred             hhhhh
Q psy11394        378 WAVVT  382 (391)
Q Consensus       378 waivT  382 (391)
                      =.+..
T Consensus      1368 TLFqM 1372 (1634)
T PLN03223       1368 SLFEN 1372 (1634)
T ss_pred             HHHHH
Confidence            44433

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=96.53  E-value=7.4e-05  Score=57.73  Aligned_cols=35  Identities=37%  Similarity=0.483  Sum_probs=26.2

Q ss_pred             cccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394        276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR  311 (391)
Q Consensus       276 f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL  311 (391)
                      -.+..+++||+++++|||||||+.|.+..| |++-.
T Consensus        22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~g-r~~~~   56 (79)
T PF07885_consen   22 KWSFIDALYFSFVTITTVGYGDIVPQTPAG-RIFTI   56 (79)
T ss_dssp             TTSHHHHHHHHHHHHTT---SSSSTSSHHH-HHHHH
T ss_pred             cCCHHHHHHHHHHHHhcccCCCccCCccch-HHHHH
Confidence            457889999999999999999999998775 44433

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=96.52  E-value=0.00072  Score=74.67  Aligned_cols=28  Identities=46%  Similarity=0.892  Sum_probs=24.6

Q ss_pred             cceeeEEEEEEeecccceecccccceeee
Q psy11394        282 AFWWAVVTMTTVGYGDMRCGAFFERGVFC  310 (391)
Q Consensus       282 ~~w~~iit~TTvGygd~r~~r~lg~Rilk  310 (391)
                      ++||+++|||||||||+.|.+..+ |++-
T Consensus       254 slYwai~TmtTVGYGDi~p~t~~E-~i~~  281 (823)
T PLN03192        254 AIYWSITTMTTVGYGDLHAVNTIE-MIFI  281 (823)
T ss_pred             HHHHHHHHHhhccCCCcCCCccch-HHHH
Confidence            799999999999999999999885 4443

>KOG1420|consensus

Probab=96.50  E-value=0.0037  Score=64.09  Aligned_cols=57  Identities=26%  Similarity=0.405  Sum_probs=40.2

Q ss_pred             hceEEEEeeCCCC-CCc-----ccccccceeeEEEEEEeecccceecccccceeeeehhHHHHH
Q psy11394        261 SSTVYFAEAGSDQ-SFF-----KSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFL  318 (391)
Q Consensus       261 ~~~~y~~e~~~~~-~~f-----~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l  318 (391)
                      .+++...|+..++ ..|     -+.-++.|+.++||+||||||++..+.+| |+|-+.-...++
T Consensus       265 ag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg-rlfmvffil~gl  327 (1103)
T KOG1420|consen  265 AGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG-RLFMVFFILGGL  327 (1103)
T ss_pred             cceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh-HHHHHHHHHHHH
Confidence            4577888876543 223     24445677889999999999999999998 766554444444

>KOG3193|consensus

Probab=96.06  E-value=0.0028  Score=64.51  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             hhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        337 WWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       337 ~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +++.+++..++++++..-+.+--+++...  .--+...++||.+||.+||||||.
T Consensus       185 ~ql~ll~s~l~clift~~c~i~h~qra~~--k~i~lf~s~y~v~vtfstvgygd~  237 (1087)
T KOG3193|consen  185 RQLLLLFSVLACLIFTGMCSIEHLQRARG--KRIDLFTSFYFVMVTFSTVGYGDW  237 (1087)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHccC--ceeeeeeeEEEEEEEEeecccccc
Confidence            55555555555555544343333333222  224566899999999999999994

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=95.86  E-value=0.00068  Score=69.16  Aligned_cols=129  Identities=11%  Similarity=0.111  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh-----ceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394        235 LYSVVMIYVHVLIPILMYIFAGVVLFS-----STVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF  309 (391)
Q Consensus       235 f~~~~~~iiDll~ilp~~~~~~~~~~~-----~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril  309 (391)
                      |++++||++|++.++..+..+++....     ..+-..+  .++..|.++.....|......-.  |-...+..+  |++
T Consensus       239 y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~--~~~~~fv~f~~~a~~~~~~~~l~--a~~vfl~~l--rll  312 (425)
T PF08016_consen  239 YFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYR--ENPRSFVDFQELAQWDQLYRYLL--AFLVFLLWL--RLL  312 (425)
T ss_pred             HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccccccCCHHHHHHHHHHHHHHH--HHHHHHHHH--HHh
Confidence            899999999998887766555433211     1111111  23344544444333221110000  113444556  888


Q ss_pred             eehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhh
Q psy11394        310 CRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFW  377 (391)
Q Consensus       310 kL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~aly  377 (391)
                      |++|..+.+ .      .+.+++..+...+..++++++++++.++.+.+.+-+.. ...|.++..|+.
T Consensus       313 ~~l~f~~~~-~------~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~-~~~f~s~~~s~~  372 (425)
T PF08016_consen  313 KLLRFNRRL-S------LLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSY-SEDFSSFSSSLV  372 (425)
T ss_pred             hheeecchH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccccCCHHHHHH
Confidence            888888777 6      78889999999999988888888888988888776543 347888877665

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=94.69  E-value=0.0085  Score=59.15  Aligned_cols=23  Identities=43%  Similarity=0.690  Sum_probs=17.6

Q ss_pred             CCCCcchhhhhhhhhhcccccCC
Q psy11394        368 FFKSIPDAFWWAVVTMTTVGYGD  390 (391)
Q Consensus       368 ~f~s~~~alywaivT~tTVGYGD  390 (391)
                      +..+|.+|++|++-|+||||||.
T Consensus        81 ~~~~f~~aF~FSveT~tTIGYG~  103 (336)
T PF01007_consen   81 NVNSFTSAFLFSVETQTTIGYGS  103 (336)
T ss_dssp             T-TTHHHHHHHHHHHHTT---SS
T ss_pred             cccchhhheeEEEEEEEEeccCC
Confidence            45789999999999999999996

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG3599|consensus

Probab=93.67  E-value=0.022  Score=62.12  Aligned_cols=140  Identities=8%  Similarity=0.049  Sum_probs=86.6

Q ss_pred             hhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhc-----eE--EEEeeCCCCCCcccccccceeeE
Q psy11394        221 LIMPSLYCLLTSLL------LYSVVMIYVHVLIPILMYIFAGVVLFSS-----TV--YFAEAGSDQSFFKSIPDAFWWAV  287 (391)
Q Consensus       221 ~~~~F~~E~llRl~------f~~~~~~iiDll~ilp~~~~~~~~~~~~-----~~--y~~e~~~~~~~f~si~~~~w~~i  287 (391)
                      +++.|+++-+.++.      |++++||++|++.+...++.+++.+...     .+  +..+.   +..|.++...--|..
T Consensus       475 ~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~---~~~f~~F~~~a~~~~  551 (798)
T KOG3599|consen  475 FVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERAS---PRTFIDFTEVAQWNI  551 (798)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CccccCHHHHHHHHH
Confidence            44556666655554      8999999999998888877766544321     11  12221   222322222221211


Q ss_pred             EEEEEeecccceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCC
Q psy11394        288 VTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENS  367 (391)
Q Consensus       288 it~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~  367 (391)
                      ..-  .=-|-...++.+  |++|++|..+.+ +      .+..++..++..++.+.++++++++.++.+.|.+-+... .
T Consensus       552 ~~~--~l~a~lvfl~ti--K~~k~l~f~~t~-~------~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v-~  619 (798)
T KOG3599|consen  552 AAR--NLLAFLVFLTTI--KLWKVLRFNKTM-S------QFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV-S  619 (798)
T ss_pred             HHH--HHHHHHHHHHHH--HHHHhcchhHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-C
Confidence            100  000114566777  999999999999 7      888899999999988888888888888888887765332 2


Q ss_pred             CCCCcchh
Q psy11394        368 FFKSIPDA  375 (391)
Q Consensus       368 ~f~s~~~a  375 (391)
                      +|.++.+|
T Consensus       620 ~f~~f~~s  627 (798)
T KOG3599|consen  620 DFRTFVAS  627 (798)
T ss_pred             ChHHHHHH
Confidence            55555443

>KOG1418|consensus

Probab=93.32  E-value=0.029  Score=56.19  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.7

Q ss_pred             CCcchhhhhhhhhhcccccCCC
Q psy11394        370 KSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       370 ~s~~~alywaivT~tTVGYGDi  391 (391)
                      -+|.+|+||+++++||+|||++
T Consensus       114 W~f~~al~fs~tv~TTIGYG~i  135 (433)
T KOG1418|consen  114 WSFSSALLFSITVITTIGYGNI  135 (433)
T ss_pred             eecchhHhhhhheeeeccCCcc
Confidence            4899999999999999999996

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=90.53  E-value=0.1  Score=57.05  Aligned_cols=23  Identities=0%  Similarity=-0.261  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy11394        235 LYSVVMIYVHVLIPILMYIFAGV  257 (391)
Q Consensus       235 f~~~~~~iiDll~ilp~~~~~~~  257 (391)
                      |+++.||++|.+.+..++..++.
T Consensus       418 y~~~~wn~~d~~~~~~~~~~~~~  440 (743)
T TIGR00870       418 YIHQLWNILDFGMNSFYLATFLD  440 (743)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999777666555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3614|consensus

Probab=89.95  E-value=0.37  Score=54.47  Aligned_cols=23  Identities=9%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy11394        235 LYSVVMIYVHVLIPILMYIFAGV  257 (391)
Q Consensus       235 f~~~~~~iiDll~ilp~~~~~~~  257 (391)
                      |+.+.||++|+++++-|.+++++
T Consensus       858 ~f~d~wN~~d~~ai~~F~vG~~~  880 (1381)
T KOG3614|consen  858 YFADFWNLIDLLAILLFLVGPVL  880 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhee
Confidence            88899999999999999988754

>PHA03098 kelch-like protein; Provisional

Probab=86.69  E-value=0.54  Score=49.21  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             CCceEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCH
Q psy11394         30 FCERVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPL  105 (391)
Q Consensus        30 ~~~~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~  105 (391)
                      ++-.++++|+|+.|...+..|....   ..|+.+...        .+++-+ + +++.|+.+|+|+.+ |++.+..+- .
T Consensus        10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--------~~~i~l~~-~~~~~~~~l~y~Yt-g~~~i~~~~-~   78 (534)
T PHA03098         10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--------ENEINLNI-DYDSFNEVIKYIYT-GKINITSNN-V   78 (534)
T ss_pred             CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--------CceEEecC-CHHHHHHHHHHhcC-CceEEcHHH-H
Confidence            3446777789999999999997654   344432111        234444 5 99999999999999 798776554 6


Q ss_pred             HhHHHHHhcCCCcchh
Q psy11394        106 DVFSEEIKFYELGDVA  121 (391)
Q Consensus       106 ~~~~~E~~f~~l~~~~  121 (391)
                      ..+.+-|++|+++...
T Consensus        79 ~~ll~~A~~l~~~~l~   94 (534)
T PHA03098         79 KDILSIANYLIIDFLI   94 (534)
T ss_pred             HHHHHHHHHhCcHHHH
Confidence            6688999999998854

>KOG3684|consensus

Probab=86.43  E-value=0.11  Score=52.30  Aligned_cols=24  Identities=25%  Similarity=0.696  Sum_probs=21.6

Q ss_pred             CCCCcchhhhhhhhhhcccccCCC
Q psy11394        368 FFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       368 ~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .-.+|.+++|...+|..++|||||
T Consensus       284 ~~~~~~nsmWli~iTFlsiGYGDi  307 (489)
T KOG3684|consen  284 VTINYLNSMWLIAITFLSIGYGDI  307 (489)
T ss_pred             hHHHHHhhHHHHHHHHhhcccCcc
Confidence            445799999999999999999997

>KOG4404|consensus

Probab=83.11  E-value=0.57  Score=45.44  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=22.7

Q ss_pred             cccccceeeEEEEEEeecccceeccc
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAF  303 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~  303 (391)
                      |+-|+.|++.||+||+|+||.+.+.-
T Consensus       186 syfds~YyCFITltTIGFGDyValQ~  211 (350)
T KOG4404|consen  186 SYFDSYYYCFITLTTIGFGDYVALQQ  211 (350)
T ss_pred             chhhhhheeeeeeeeccccchhhhcc
Confidence            55688999999999999999987764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	391
2a79_B	499	Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu		1e-85
3lut_B	499	A Structural Model For The Full-Length Shaker Potas		4e-85
2r9r_B	514	Shaker Family Voltage Dependent Potassium Channel (		9e-85
3lnm_B	514	F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan		1e-84
1qdv_A	99	N-Terminal Domain, Voltage-Gated Potassium Channel		3e-46
1t1d_A	100	Crystal Structure Of The Tetramerization Domain Of		1e-45
1exb_E	103	Structure Of The Cytoplasmic Beta Subunit-T1 Assemb		4e-45
1eod_A	100	Crystal Structure Of The N136d Mutant Of A Shaker T		6e-45
1eoe_A	100	Crystal Structure Of The V135r Mutant Of A Shaker T		7e-45
1eof_A	100	Crystal Structure Of The N136a Mutant Of A Shaker T		1e-44
1qdw_A	87	N-Terminal Domain, Voltage-Gated Potassium Channel		4e-42
1a68_A	95	Crystal Structure Of The Tetramerization Domain Of		4e-42
1dsx_A	87	Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Lengt		2e-41
3kvt_A	115	Tetramerization Domain From Akv3.1 (shaw-subfamily)		9e-12
1nn7_A	105	Crystal Structure Of The Tetramerization Domain Of		2e-09
2i2r_A	144	Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Len		6e-09
2nz0_B	140	Crystal Structure Of Potassium Channel Kv4.3 In Com		8e-09
1s1g_A	124	Crystal Structure Of Kv4.3 T1 Domain Length = 124		2e-08
2a0l_A	241	Crystal Structure Of Kvap-33h1 Fv Complex Length =		8e-06
1orq_C	223	X-Ray Structure Of A Voltage-Dependent Potassium Ch		8e-06
3beh_A	355	Structure Of A Bacterial Cyclic Nucleotide Regulate		8e-05
3beh_A	355	Structure Of A Bacterial Cyclic Nucleotide Regulate		4e-04
2a9h_A	155	Nmr Structural Studies Of A Potassium Channel Chary		4e-04
2k1e_A	103	Nmr Studies Of A Channel Protein Without Membranes:		4e-04
3or7_C	103	On The Structural Basis Of Modal Gating Behavior In		5e-04

>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499

Iteration: 1
 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/399 (46%), Positives = 226/399 (56%), Gaps = 50/399 (12%)
Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16  PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69
Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 70  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPXXXXXXXXX 233
                       F+T +N T I   +    TDPFF++ET  I       +          
Sbjct: 190 DENEDMHGGGVTFHTYSNST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248
Query: 234 XXXXVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
                +M  + ++  I  +I  G  L       AE   D    +         V+ +  V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301
Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXL 352
                                R F L  +S+   ++G+++  +                L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341
Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEA   +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380

>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499

Iteration: 1
 Score =  311 bits (797), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 186/399 (46%), Positives = 225/399 (56%), Gaps = 50/399 (12%)
Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+ CERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 16  PGHPQ-----DTYDP-EADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 69
Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 70  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 129
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP F+
Sbjct: 130 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 189
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLI-------MPXXXXXXXXX 233
                       F+T +  T I   +    TDPFF++ET  I       +          
Sbjct: 190 DENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 248
Query: 234 XXXXVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTV 293
                +M  + ++  I  +I  G  L       AE   D    +         V+ +  V
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTEL-------AEKPEDAQQGQQAMSLAILRVIRLVRV 301
Query: 294 GYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXL 352
                                R F L  +S+   ++G+++  +                L
Sbjct: 302 --------------------FRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 341
Query: 353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           FSSAVYFAEA   +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 342 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380

>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514

Iteration: 1
 Score =  310 bits (794), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 184/392 (46%), Positives = 231/392 (58%), Gaps = 40/392 (10%)
Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+  ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 35  PGHPQ-----DTYDP-EADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 88
Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 89  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 148
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP F+
Sbjct: 149 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 208
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPXXXXXXXXXXXXXVVM 240
                       F+T +  T I   +    TDPFF++ET  I+                 
Sbjct: 209 DENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKA 267
Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRC 300
            +   ++ I+  +   ++ +  T++  E+      F+++       VV +  +    MR 
Sbjct: 268 GFFTNIMNIIDIV--AIIPYYVTIFLTESNKSVLQFQNV-----RRVVQIFRI----MRI 316
Query: 301 GAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXLFSSAVYF 359
                        LR F L  +S+   ++G+++  +                LFSSAVYF
Sbjct: 317 -------------LRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF 363
Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           AEA   +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 364 AEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395

>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514

Iteration: 1
 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/392 (46%), Positives = 231/392 (58%), Gaps = 40/392 (10%)
Query: 9   PSHSQHYPGVDHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF 68
           P H Q     D ++P   DH+  ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYF
Sbjct: 35  PGHPQ-----DTYDP-EADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYF 88
Query: 69  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFRED 128
           DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FRED
Sbjct: 89  DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFRED 148
Query: 129 EGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARXXXXXXXXXXXXXXXXXCLETLPEFK 188
           EG+IKEEE+PLP +EFQR+VWLLFEYPESS  AR                 CLETLP F+
Sbjct: 149 EGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFR 208
Query: 189 HYK--------VFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPXXXXXXXXXXXXXVVM 240
                       F+T +  T I   +    TDPFF++ET  I+                 
Sbjct: 209 DENEDMHGGGVTFHTYSQST-IGYQQSTSFTDPFFIVETLCIIWWSFEFLVRFFACPSKA 267
Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRC 300
            +   ++ I+  +   ++ +  T++  E+      F+++       VV +  +    MR 
Sbjct: 268 GFFTNIMNIIDIV--AIIPYYVTIFLTESNKSVLQFQNV-----RRVVQIFRI----MRI 316
Query: 301 GAFFERGVFCRSRLRKFLLQEYSRCF-LVGKSIPDAFWWAXXXXXXXXXXXXLFSSAVYF 359
                        LR F L  +S+   ++G+++  +                LFSSAVYF
Sbjct: 317 -------------LRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF 363
Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           AEA   +S F SIPDAFWWAVV+MTTVGYGDM
Sbjct: 364 AEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395

>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-131 Length = 99

Iteration: 1
 Score =  182 bits (462), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/99 (86%), Positives = 93/99 (93%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRPSFDAILYYY
Sbjct: 1   ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEG 130
           QSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FREDEG
Sbjct: 61  QSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEG 99

>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 100

Iteration: 1
 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 95/100 (95%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           QSGGRLRRPVNVPLDVFSEEIKFYELG+ A  ++REDEGF
Sbjct: 61  QSGGRLRRPVNVPLDVFSEEIKFYELGENAFERYREDEGF 100

>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of Voltage-Dependent K Channels Length = 103

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 91/98 (92%)
Query: 27  DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDA 86
           DH+ CERVVIN+SGLRFETQL+TL QFP TLLG+P +R+RYFDPLRNEYFFDRNRPSFDA
Sbjct: 6   DHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDA 65
Query: 87  ILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNK 124
           ILYYYQSGGRLRRPVNVPLD+FSEEIKFYELG+ A  K
Sbjct: 66  ILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEK 103

>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1 Domain Length = 100

Iteration: 1
 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 95/100 (95%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           QSGGRLRRPV+VPLDVFSEEIKFYELG+ A  ++REDEGF
Sbjct: 61  QSGGRLRRPVDVPLDVFSEEIKFYELGENAFERYREDEGF 100

>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1 Domain Length = 100

Iteration: 1
 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 94/100 (94%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           QSGGRLRRP NVPLDVFSEEIKFYELG+ A  ++REDEGF
Sbjct: 61  QSGGRLRRPRNVPLDVFSEEIKFYELGENAFERYREDEGF 100

>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1 Domain Length = 100

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 94/100 (94%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           QSGGRLRRPV VPLDVFSEEIKFYELG+ A  ++REDEGF
Sbjct: 61  QSGGRLRRPVAVPLDVFSEEIKFYELGENAFERYREDEGF 100

>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-119 Length = 87

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRPSFDAILYYY
Sbjct: 1   ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELG 118
           QSGGRLRRPVNVPLD+FSEEI+FYELG
Sbjct: 61  QSGGRLRRPVNVPLDIFSEEIRFYELG 87

>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 95

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 89/95 (93%)
Query: 31  CERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYY 90
            ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+
Sbjct: 1   MERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYF 60
Query: 91  YQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKF 125
           YQSGGRLRRPVNVPLDVFSEEIKFYELG+ A  ++
Sbjct: 61  YQSGGRLRRPVNVPLDVFSEEIKFYELGENAFERY 95

>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Length = 87

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 84/87 (96%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVIN+SGLRFE QL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRPSFDAILYYY
Sbjct: 1   ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELG 118
           QSGGRLRRPVNVPLD+FSEEI+FYELG
Sbjct: 61  QSGGRLRRPVNVPLDIFSEEIRFYELG 87

>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily) Voltage-gated Potassium Channel Length = 115

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 29  DFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAIL 88
           D   RV+INV G+R ET   TL + P T L      +  +DP+ NEYFFDR+   F  I+
Sbjct: 2   DAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQII 61
Query: 89  YYYQSGGRLRRPVNVPLDVFSEEIKFYEL 117
            YY+S G+L  P +V   +F EE++F+ L
Sbjct: 62  NYYRS-GKLHYPTDVCGPLFEEELEFWGL 89

>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shal Voltage- Gated Potassium Channel Length = 105

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 34  VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
           +V+NVSG RF+T   TL ++P+TLLG   R   ++ P   +YFFDR+   F  IL +Y++
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSSERDF-FYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 94  GGRLRRPVNVPLDVFSEEIKFYEL-----GDVATNKFRE 127
            G+L  P +  +  + EE+ F+ L     GD    ++++
Sbjct: 61  -GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKD 98

>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Length = 144

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           E +V+NVSG RF+T   TL ++P+TLLG   +   +F+    EYFFDR+   F  +L +Y
Sbjct: 41  ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVLNFY 99
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYE-----LGDVATNKFRE 127
           ++ G+L  P    +  + +E+ FY      +GD    ++++
Sbjct: 100 RT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKD 139

>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex With Its Regulatory Subunit Kchip1 (Casp Target) Length = 140

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           E +V+NVSG RF+T   TL ++P+TLLG   +   +F+    EYFFDR+   F  +L +Y
Sbjct: 35  ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVLNFY 93
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYE-----LGDVATNKFRE 127
           ++ G+L  P    +  + +E+ FY      +GD    ++++
Sbjct: 94  RT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKD 133

>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain Length = 124

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           E +V+NVSG RF+T   TL ++P+TLLG   +   +F+    EYFFDR+   F  +L +Y
Sbjct: 13  ELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVLNFY 71
Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYE-----LGDVATNKFRE 127
           ++ G+L  P    +  + +E+ FY      +GD    ++++
Sbjct: 72  RT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKD 111

>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 356 AVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           A+Y  E    NS  KS+ DA WWAVVT TTVGYGD+
Sbjct: 162 AIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 197

>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 356 AVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           A+Y  E    NS  KS+ DA WWAVVT TTVGYGD+
Sbjct: 150 AIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 185

>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 256 GVVLFSSTV--YFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGD 297
           GVVLF+  +  Y  E       F SIP A WWAVVT++T GYGD
Sbjct: 137 GVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGD 180

>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 356 AVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGD 390
           A Y  E   +   F SIP A WWAVVT++T GYGD
Sbjct: 146 AAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGD 180

>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            AE G+  +   S PDA WW+V T TTVGYGD+
Sbjct: 72  LAERGAPGAALISYPDALWWSVETATTVGYGDL 104

>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes: Structure And Dynamics Of Water-Solubilized Kcsa Length = 103

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 360 AEAGSENSFFKSIPDAFWWAVVTMTTVGYGD 390
           AE G+  +   S PDA WW+V T TTVGYGD
Sbjct: 29  AERGAPGAALISYPDAIWWSVETATTVGYGD 59

>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71i Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 359 FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            AE G+  +   + P A WW+V+T TTVGYGD+
Sbjct: 28  LAERGAPGAQLITYPRALWWSVITATTVGYGDL 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	1e-97
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	2e-39
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	5e-39
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	8e-38
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	8e-36
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	6e-35
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	3e-24
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	4e-18
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	5e-21
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	3e-20
2a9h_A	155	Voltage-gated potassium channel; potassium channel	3e-20
2a9h_A	155	Voltage-gated potassium channel; potassium channel	2e-19
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	4e-20
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	2e-19
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	4e-20
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	3e-19
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	5e-20
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	5e-19
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	2e-18
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	5e-09
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	8e-19
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-18
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	2e-17
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-08
1xl4_A	301	Inward rectifier potassium channel; integral membr	4e-10
1xl4_A	301	Inward rectifier potassium channel; integral membr	3e-09
1xl4_A	301	Inward rectifier potassium channel; integral membr	4e-04
1p7b_A	333	Integral membrane channel and cytosolic domains; t	9e-09
1p7b_A	333	Integral membrane channel and cytosolic domains; t	2e-08
1p7b_A	333	Integral membrane channel and cytosolic domains; t	3e-04
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	2e-08
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	8e-08
1lnq_A	336	MTHK channels, potassium channel related protein;	7e-08
1lnq_A	336	MTHK channels, potassium channel related protein;	9e-07
1lnq_A	336	MTHK channels, potassium channel related protein;	1e-05
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	8e-08
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	2e-06
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	8e-06
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	8e-07
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-05
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-04
2q67_A	114	Potassium channel protein; inverted teepee, helix	9e-07
2q67_A	114	Potassium channel protein; inverted teepee, helix	3e-05
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-04
3ouf_A	97	Potassium channel protein; ION channel, membrane,	1e-06
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-05
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-04

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score =  299 bits (767), Expect = 1e-97
 Identities = 191/377 (50%), Positives = 238/377 (63%), Gaps = 32/377 (8%)

Query: 23  PIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRP 82
               DH+  ERVVIN+SGLRFETQL+TL QFPETLLGDP +R+RYFDPLRNEYFFDRNRP
Sbjct: 43  DPEADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRP 102

Query: 83  SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSH 142
           SFDAILYYYQSGGRLRRPVNVPLD+FSEEI+FYELG+ A   FREDEG+IKEEE+PLP +
Sbjct: 103 SFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPEN 162

Query: 143 EFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK-------VFNT 195
           EFQR+VWLLFEYPESS  AR++AI+SV VIL+SIV FCLETLP F+          V   
Sbjct: 163 EFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFH 222

Query: 196 TTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFA 255
           T + + I   +    TDPFF++ET        C++     + V              I  
Sbjct: 223 TYSQSTIGYQQSTSFTDPFFIVETL-------CIIWFSFEFLVRFFACPSKAGFFTNIMN 275

Query: 256 GVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR 315
            + + +   Y+      +S    +       VV +  +    MR              LR
Sbjct: 276 IIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRI----MRI-------------LR 318

Query: 316 KFLLQEYSRCF-LVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPD 374
            F L  +S+   ++G+++  +     + +  +  GV+LFSSAVYFAEA   +S F SIPD
Sbjct: 319 IFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPD 378

Query: 375 AFWWAVVTMTTVGYGDM 391
           AFWWAVV+MTTVGYGDM
Sbjct: 379 AFWWAVVSMTTVGYGDM 395

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124

 Score =  136 bits (343), Expect = 2e-39
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 23  PIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRP 82
           P   +    E +V+NVSG RF+T   TL ++P+TLLG   +   +F+    EYFFDR+  
Sbjct: 4   PADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDRDPE 62

Query: 83  SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSH 142
            F  +L +Y++ G+L  P    +  + +E+ FY +          +E   ++ E     H
Sbjct: 63  VFRCVLNFYRT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLEHHH 121

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140

 Score =  135 bits (341), Expect = 5e-39
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 20  HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDR 79
              P   +    E +V+NVSG RF+T   TL ++P+TLLG   +   +F+    EYFFDR
Sbjct: 23  PLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDR 81

Query: 80  NRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEE 136
           +   F  +L +Y++ G+L  P    +  + +E+ FY +          +E   ++ E
Sbjct: 82  DPEVFRCVLNFYRT-GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRE 137

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100

 Score =  131 bits (330), Expect = 8e-38
 Identities = 86/100 (86%), Positives = 95/100 (95%)

Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60

Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           QSGGRLRRPVNVPLDVFSEEIKFYELG+ A  ++REDEGF
Sbjct: 61  QSGGRLRRPVNVPLDVFSEEIKFYELGENAFERYREDEGF 100

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115

 Score =  125 bits (317), Expect = 8e-36
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 29  DFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAIL 88
           D   RV+INV G+R ET   TL + P T L      +  +DP+ NEYFFDR+   F  I+
Sbjct: 2   DAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQII 61

Query: 89  YYYQSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEEK 137
            YY+S G+L  P +V   +F EE++F+ L                 + +
Sbjct: 62  NYYRS-GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQ 109

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105

 Score =  123 bits (311), Expect = 6e-35
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 34  VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
           +V+NVSG RF+T   TL ++P+TLLG    R  ++ P   +YFFDR+   F  IL +Y++
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60

Query: 94  GGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGFIKEEE 136
            G+L  P +  +  + EE+ F+ L          +E   +  E
Sbjct: 61  -GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRE 102

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score =  101 bits (253), Expect = 3e-24
 Identities = 30/180 (16%), Positives = 49/180 (27%), Gaps = 37/180 (20%)

Query: 156 ESSQAARVVAIISVFVILLSIVIFCLETLPEF--KHYKVFNTTTNGTKIE--------ED 205
                 R+ A ++  +    ++     T+P+   +                         
Sbjct: 2   SVLPFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLL 61

Query: 206 EVPD----ITDPFFLIETFLIMPSLYCLLTSLL-----------------------LYSV 238
           +          P   I+   ++  L   L                           L  V
Sbjct: 62  KRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRV 121

Query: 239 VMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
           +      LI +       +   +   Y  E       F SIP A WWAVVT++T GYGD 
Sbjct: 122 LANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDT 181

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           +   T  G  +   + A Y  E   +   F SIP A WWAVVT++T GYGD 
Sbjct: 130 IGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDT 181

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 87.3 bits (216), Expect = 5e-21
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 246 LIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
                + +   ++  S     AE G+  +   + P A WW+V T TTVGYGD+
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 85.3 bits (211), Expect = 3e-20
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            ++  S     AE G+  +   + P A WW+V T TTVGYGD+
Sbjct: 18  VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 85.7 bits (212), Expect = 3e-20
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 199 GTKIEEDEVPDITDPFFLIETFLIMPSLYCL-LTSLLLYSVVM-IYVHVLIPILMYIFAG 256
           G+         I     LI+    M S     L  LLL      ++        + +   
Sbjct: 3   GSHHHHHHSSGIEGRGRLIKHMPPMLSGLLARLVKLLLGRHGSALHWRAAGAATVLLVIV 62

Query: 257 VVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
           ++  S     AE G+  +   S PDA WW+V T TTVGYGD+
Sbjct: 63  LLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL 104

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            ++  S     AE G+  +   S PDA WW+V T TTVGYGD+
Sbjct: 62  VLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL 104

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 84.4 bits (209), Expect = 4e-20
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 244 HVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
                  + +   ++  S     AE G+  +   + P A WWA  T TTV YGD+
Sbjct: 27  RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDL 81

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            ++  S     AE G+  +   + P A WWA  T TTV YGD+
Sbjct: 39  VLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDL 81

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 85.7 bits (212), Expect = 4e-20
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 246 LIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
                + +   ++  S     AE G+  +   + P A WW+V T TTVGYGD+
Sbjct: 35  AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 83.4 bits (206), Expect = 3e-19
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            ++  S     AE G+  +   + P A WW+V T TTVGYGD+
Sbjct: 45  VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107

 Score = 83.5 bits (207), Expect = 5e-20
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 28  HDFCERVVINVSGLRFETQLRTLNQFPETLLG---DPARRIRYFDPLRNEYFFDRNRPSF 84
               + V +NV G  F T  +TL + P++ L         +         Y  DR+   F
Sbjct: 2   GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 61

Query: 85  DAILYYYQSGGRLRRPVNVPLDVFSEEIKFYEL 117
             +L Y +  G+L    ++  +   EE +FY +
Sbjct: 62  GPVLNYLRH-GKLVINKDLAEEGVLEEAEFYNI 93

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 80.6 bits (199), Expect = 5e-19
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 241 IYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
            +          +   +   S     AE G+  +   S PDA WW+V T TTVGYGD 
Sbjct: 3   DHEREAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDR 60

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 350 VVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           +   S     AE G+  +   S PDA WW+V T TTVGYGD 
Sbjct: 19  LEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDR 60

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 330 KSIPDAFWWAVVTMTTVGYG 349
            S PDA WW+V T TTVGYG
Sbjct: 39  ISYPDAIWWSVETATTVGYG 58

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202

 Score = 83.1 bits (205), Expect = 8e-19
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 29  DFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNE---YFFDRNRPSFD 85
              + V +NV G  F T  +TL + P++ L    +     D  ++E   Y  DR+   F 
Sbjct: 9   SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 68

Query: 86  AILYYYQSGGRLRRPVNVPLDVFSEEIKFYEL 117
            +L Y +  G+L    ++  +   EE +FY +
Sbjct: 69  PVLNYLRH-GKLVINKDLAEEGVLEEAEFYNI 99

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 70/203 (34%)

Query: 148 VWLLFEYPESSQAARVVAIISVFVILL--------------------SIVIFCLE----- 182
           +  + E+P         A++SV V+++                     ++I   +     
Sbjct: 1   IGDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRA 60

Query: 183 -TLPEFKHYKVFNTTTNGTKIEEDEVPDITD-----PFFLIETFLIMPSLYCLLTSL--- 233
               +   Y                   + +     P  L+    ++      L      
Sbjct: 61  YKSGDPAGYVKKT---------------LYEIPALVPAGLL---ALIEGHLAGLGLFRLV 102

Query: 234 -----------------LLYSVVMIYVHVLIPILMYIFAGVVLFSST-VYFAEAGSDQSF 275
                             L ++      +    L       VL+ +  +Y  E     S 
Sbjct: 103 RLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSS 162

Query: 276 FKSIPDAFWWAVVTMTTVGYGDM 298
            KS+ DA WWAVVT TTVGYGD+
Sbjct: 163 IKSVFDALWWAVVTATTVGYGDV 185

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 23/42 (54%), Positives = 28/42 (66%)

Query: 350 VVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           V+  + A+Y  E    NS  KS+ DA WWAVVT TTVGYGD+
Sbjct: 144 VLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV 185

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 16/20 (80%), Positives = 17/20 (85%)

Query: 330 KSIPDAFWWAVVTMTTVGYG 349
           KS+ DA WWAVVT TTVGYG
Sbjct: 164 KSVFDALWWAVVTATTVGYG 183

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 59.3 bits (143), Expect = 4e-10
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 334 DAFWWAVVTMTTVGY--GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              W   +T+ T  Y     LF+ A        EN+   S  DAF+++V TM T+GYG +
Sbjct: 43  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 244 HVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
             +  I         LF+          + +   S  DAF+++V TM T+GYG +
Sbjct: 48  VFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 273 QSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSI 332
              +  +    W   +T+ T  Y  +   A F   +        +L            S 
Sbjct: 35  DDHYHDLLTVSWPVFITLITGLY--LVTNALF--ALA-------YLACGDVIENARPGSF 83

Query: 333 PDAFWWAVVTMTTVGYG 349
            DAF+++V TM T+GYG
Sbjct: 84  TDAFFFSVQTMATIGYG 100

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 55.6 bits (133), Expect = 9e-09
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 334 DAFWWAVVTMTTVGY--GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              W          +     LF+      +A   N        AF+++V T+ TVGYGDM
Sbjct: 57  KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 220 FLIMPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSI 279
              MP+       L  +++ + +      +         LF+      +A          
Sbjct: 40  AYGMPASV--WRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGF 97

Query: 280 PDAFWWAVVTMTTVGYGDM 298
             AF+++V T+ TVGYGDM
Sbjct: 98  VGAFFFSVETLATVGYGDM 116

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 317 FLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYG 349
           + L +             AF+++V T+ TVGYG
Sbjct: 82  YQLGDAPIANQSPPGFVGAFFFSVETLATVGYG 114

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGS-DQSFFKSIPD 281
           + S      S L  ++V +        L  +F  +    +T+Y   +      F      
Sbjct: 22  LGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGG 81

Query: 282 AFWWAVVTMTTVGYGDM 298
           AF+++V T+ TVGYGDM
Sbjct: 82  AFFFSVETLATVGYGDM 98

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 52.4 bits (125), Expect = 8e-08
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 334 DAFWWAVVTMTTVGYGV--VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           D  W        V + +    F++      A   N F      AF+++V T+ TVGYGDM
Sbjct: 39  DLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM 98

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
           M  +  ++   L   + +    +L+ +L  I  G   F    +F E    +S+      +
Sbjct: 1   MVLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGF----HFIE---GESWT----VS 49

Query: 283 FWWAVVTMTTVGYGDM 298
            +W  VT+ TVGYGD 
Sbjct: 50  LYWTFVTIATVGYGDY 65

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 326 FLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTT 385
            ++ K +P         +  +   V+++ +A +    G      +S   + +W  VT+ T
Sbjct: 6   EIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIAT 59

Query: 386 VGYGDM 391
           VGYGD 
Sbjct: 60  VGYGDY 65

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 326 FLVGKSIPDAFWWAVVTMTTVGYGVVLFSS 355
           F+ G+S   + +W  VT+ TVGYG    S+
Sbjct: 40  FIEGESWTVSLYWTFVTIATVGYGDYSPST 69

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 247 IPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
              ++ +   V+++ +  +    G      +S   + +W  VT+ TVGYGD 
Sbjct: 3   ATRILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDY 48

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            V+++ +A +    G      +S   + +W  VT+ TVGYGD 
Sbjct: 12  AVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDY 48

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
           G+S   + +W  VT+ TVGYG
Sbjct: 26  GESWTVSLYWTFVTIATVGYG 46

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
           M S    L  +L   +          +L  +    +   +  Y    G          DA
Sbjct: 4   MLSFILTLKRMLKACLRAWKDKEFQ-VLFVLTFLTLTSGTIFYSTVEG------LRPLDA 56

Query: 283 FWWAVVTMTTVGYGDMR 299
            +++VVT+TTVG G+  
Sbjct: 57  LYFSVVTLTTVGDGNFS 73

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              +  + +  +   +  Y    G          DA +++VVT+TTVG G+ 
Sbjct: 27  FQVLFVLTFLTLTSGTIFYSTVEG------LRPLDALYFSVVTLTTVGDGNF 72

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
           G    DA +++VVT+TTVG G
Sbjct: 50  GLRPLDALYFSVVTLTTVGDG 70

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
           + +L  +L + L       +  + +  ++ + +G + +S+                  DA
Sbjct: 5   LLTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEGL-----------RPIDA 53

Query: 283 FWWAVVTMTTVGYGDM 298
            +++VVT+TTVG G+ 
Sbjct: 54  LYFSVVTLTTVGAGNF 69

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              +  +    ++  +  Y    G          DA +++VVT+TTVG G+ 
Sbjct: 24  FQVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNF 69

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
           G    DA +++VVT+TTVG G
Sbjct: 47  GLRPIDALYFSVVTLTTVGAG 67

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 249 ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDM 298
           +L  +    ++  +  Y    G          DA +++VVT+TTVGYGD 
Sbjct: 9   VLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDF 52

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 340 VVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              +  +    ++  +  Y    G          DA +++VVT+TTVGYGD 
Sbjct: 7   FQVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDF 52

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 329 GKSIPDAFWWAVVTMTTVGYG 349
           G    DA +++VVT+TTVGYG
Sbjct: 30  GLRPIDALYFSVVTLTTVGYG 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	100.0
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	99.97
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	99.96
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	99.95
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	99.95
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	99.95
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	99.93
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	99.91
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.89
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.87
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.87
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.79
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.44
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	99.41
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.32
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	99.32
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.27
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.23
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.0
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	98.91
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	98.88
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	98.81
1p7b_A	333	Integral membrane channel and cytosolic domains; t	98.59
1xl4_A	301	Inward rectifier potassium channel; integral membr	98.53
3ouf_A	97	Potassium channel protein; ION channel, membrane,	98.45
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	98.43
2q67_A	114	Potassium channel protein; inverted teepee, helix	98.41
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	98.4
2a9h_A	155	Voltage-gated potassium channel; potassium channel	98.37
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.35
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	98.32
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.28
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	98.28
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	98.22
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	98.11
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	98.07
1lnq_A	336	MTHK channels, potassium channel related protein;	98.02
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.02
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	97.85
3sya_A	340	G protein-activated inward rectifier potassium CH;	97.8
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.76
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	97.64
1p7b_A	333	Integral membrane channel and cytosolic domains; t	97.6
1xl4_A	301	Inward rectifier potassium channel; integral membr	97.51
2q67_A	114	Potassium channel protein; inverted teepee, helix	97.49
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	97.48
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	97.37
3um7_A	309	Potassium channel subfamily K member 4; potassium	97.36
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	97.1
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	96.98
3ouf_A	97	Potassium channel protein; ION channel, membrane,	96.91
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	96.26
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.91
1lnq_A	336	MTHK channels, potassium channel related protein;	95.56
3sya_A	340	G protein-activated inward rectifier potassium CH;	95.55
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	95.14
2vpk_A	116	Myoneurin; transcription regulation, transcription	94.43
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	94.23
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	94.03
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	93.84
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	93.65
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	93.1
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	93.09
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	92.34
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	92.17
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	92.09
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	91.74
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	90.77
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	90.6
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	90.55
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	90.3
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	90.17
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	89.86
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	87.37
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	84.98
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	84.22

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=100.00  E-value=1.7e-64  Score=520.84  Aligned_cols=335  Identities=57%  Similarity=0.932  Sum_probs=279.5

Q ss_pred             CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394         27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD  106 (391)
Q Consensus        27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~  106 (391)
                      .++.+++|+|||||++|+|+++||+|+|+|+|+++.++.++|+++++||||||||++|++||||||+||++++|+++|.+
T Consensus        47 ~~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~~  126 (514)
T 2r9r_B           47 DHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD  126 (514)
T ss_dssp             ----CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCHH
T ss_pred             cCCCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccHH
Confidence            45577899999999999999999999999999998887889999999999999999999999999998899999999999


Q ss_pred             hHHHHHhcCCCcchhcchhhhccccccccCCCCCchHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCcc
Q psy11394        107 VFSEEIKFYELGDVATNKFREDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPE  186 (391)
Q Consensus       107 ~~~~E~~f~~l~~~~~e~~~~~e~~~~~~~~~~~~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~  186 (391)
                      .|.+|++||+|+++.+++++++|+..++++++.|++++|+++|.++|+|.||.+|++|+++++++|++|++++|++|+|+
T Consensus       127 ~~~~E~~f~~i~~~~~~~~~~~e~~~~~~~~~~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~  206 (514)
T 2r9r_B          127 IFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPI  206 (514)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTCCCCCCCCCCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhcCCCHHHHhhhhhhhhccccccccCchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            99999999999999999999888877777778899999999999999999999999999999999999999999999998


Q ss_pred             ccccccccccC-------CCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy11394        187 FKHYKVFNTTT-------NGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-------LYSVVMIYVHVLIPILMY  252 (391)
Q Consensus       187 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f~~~~~~iiDll~ilp~~  252 (391)
                      ++..+......       +.+.....+......++.++|.+|+++|++|+++|++       |++++||++|+++++|++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~  286 (514)
T 2r9r_B          207 FRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYY  286 (514)
T ss_dssp             HHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHH
Confidence            75421000000       0000000112235678999999999999999999999       899999999999999999


Q ss_pred             HHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhhhhccccccc
Q psy11394        253 IFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSI  332 (391)
Q Consensus       253 ~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l  332 (391)
                      +.++.....         .....+.+.     ..++++       +|.+|++  |++|+.|+.+++ +      .+..++
T Consensus       287 i~l~~~~~~---------~~~~~~~~~-----~~~lrv-------lRllRvl--RilkL~r~~~~l-~------~l~~tl  336 (514)
T 2r9r_B          287 VTIFLTESN---------KSVLQFQNV-----RRVVQI-------FRIMRIL--RIFKLSRHSKGL-Q------ILGQTL  336 (514)
T ss_dssp             HHHHHHHTS---------CSHHHHHTT-----HHHHHH-------HHHHGGG--GGGGGGGSCHHH-H------HHHHHH
T ss_pred             HHHHhhhcc---------ccchhhhhH-----HHHHHH-------HHHHHHH--HHHHHhhhhhHH-H------HHHHHH
Confidence            887653210         000000000     123334       7888888  999999999999 8      888888


Q ss_pred             CccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        333 PDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       333 ~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .++.+.++.++++++++++++|+++|+.|...++.+|.++++|+||+++|||||||||+
T Consensus       337 ~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi  395 (514)
T 2r9r_B          337 KASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM  395 (514)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCC
Confidence            89999998888888888899999999999887888999999999999999999999996

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=99.97  E-value=1.1e-32  Score=222.36  Aligned_cols=99  Identities=86%  Similarity=1.430  Sum_probs=93.6

Q ss_pred             ceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHH
Q psy11394         32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE  111 (391)
Q Consensus        32 ~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E  111 (391)
                      ++|+|||||++|+|+++||+++|+|+|+++.++..+++++++||||||||++|++||||||+||++++|+++|.+.|.+|
T Consensus         1 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E   80 (100)
T 1t1d_A            1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE   80 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred             CEEEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence            58999999999999999999999999999887777899999999999999999999999998679999999999999999


Q ss_pred             HhcCCCcchhcchhhhccc
Q psy11394        112 IKFYELGDVATNKFREDEG  130 (391)
Q Consensus       112 ~~f~~l~~~~~e~~~~~e~  130 (391)
                      |+||+|++..+++++++|+
T Consensus        81 a~fy~i~~~~~~~~~~~eg   99 (100)
T 1t1d_A           81 IKFYELGENAFERYREDEG   99 (100)
T ss_dssp             HHHTTCCHHHHHHHHHHHC
T ss_pred             HHHcCCCHHHHHHHHHhcC
Confidence            9999999999999887764

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=99.96  E-value=7.1e-30  Score=211.28  Aligned_cols=95  Identities=39%  Similarity=0.654  Sum_probs=89.2

Q ss_pred             CCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHH
Q psy11394         30 FCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFS  109 (391)
Q Consensus        30 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~  109 (391)
                      .+++|+|||||++|+|+++||+++|+|+|+++.+....+++++++|||||||++|++||||||+ |++++|+++|...|+
T Consensus         3 ~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~-G~l~~p~~~~~~~~~   81 (115)
T 3kvt_A            3 AENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRS-GKLHYPTDVCGPLFE   81 (115)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHH-SCBCCCSSSCHHHHH
T ss_pred             CCCEEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcC-CCCCCCCcccHHHHH
Confidence            5689999999999999999999999999999987777788999999999999999999999999 899999999999999


Q ss_pred             HHHhcCCCcchhcchh
Q psy11394        110 EEIKFYELGDVATNKF  125 (391)
Q Consensus       110 ~E~~f~~l~~~~~e~~  125 (391)
                      +||+||+|++..++.+
T Consensus        82 ~Ea~fy~i~~~~l~~C   97 (115)
T 3kvt_A           82 EELEFWGLDSNQVEPC   97 (115)
T ss_dssp             HHHHHHTCCGGGBCGG
T ss_pred             HHHHHhCCChHHHHHH
Confidence            9999999999988754

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=99.95  E-value=5.7e-29  Score=208.45  Aligned_cols=97  Identities=33%  Similarity=0.629  Sum_probs=86.9

Q ss_pred             CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394         27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD  106 (391)
Q Consensus        27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~  106 (391)
                      ....+++|+|||||++|+|+++||+++|+|+|++ ..+...+++++++|||||||++|++||||||+ |++++|+++|..
T Consensus         8 ~~~~~~~V~LNVGG~~F~t~~~TL~~~p~S~L~~-~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~-G~l~~p~~~~~~   85 (124)
T 1s1g_A            8 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT-GKLHYPRYECIS   85 (124)
T ss_dssp             ----CCEEEEEETTEEEEEEHHHHTTSTTSSTTS-SGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH-SCBCCCTTSCHH
T ss_pred             CCCCCCEEEEEeCCEEEEEeHHHHhcCCCceecc-cCCcccccCCCCcEEEcCChHHHHHHHHHHhc-CCCCCCCCcCHH
Confidence            3456789999999999999999999999999998 44556789999999999999999999999999 899999999999


Q ss_pred             hHHHHHhcCCCcchhcchh
Q psy11394        107 VFSEEIKFYELGDVATNKF  125 (391)
Q Consensus       107 ~~~~E~~f~~l~~~~~e~~  125 (391)
                      .|++||+||+|++..++++
T Consensus        86 ~l~~Ea~fy~i~~l~l~~c  104 (124)
T 1s1g_A           86 AYDDELAFYGILPEIIGDC  104 (124)
T ss_dssp             HHHHHHHHTTCCGGGBCHH
T ss_pred             HHHHHHHHcCCChHHHHHH
Confidence            9999999999999887754

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=99.95  E-value=1.3e-28  Score=210.24  Aligned_cols=97  Identities=33%  Similarity=0.629  Sum_probs=89.1

Q ss_pred             CCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394         27 DHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD  106 (391)
Q Consensus        27 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~  106 (391)
                      ....+++|+|||||++|+|+++||+++|+|+|++ ..+...+++++++|||||||++|++||||||+ |++++|+++|..
T Consensus        30 ~~~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~-~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~-G~l~~p~~~~~~  107 (140)
T 2nz0_B           30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT-GKLHYPRYECIS  107 (140)
T ss_dssp             CTTCCCEEEEEETTEEEEEEHHHHHTCTTSTTTS-GGGGGSEETTTTEEEECSCHHHHHHHHHHHHH-SSBCCCTTSCHH
T ss_pred             cCCCCCEEEEEECCEEEEeeHHHHhcCCCeeecc-cCCcccccCCCCeEEEeCCcHHHHHHHHHHhc-CCcCCCCCcCHH
Confidence            3456789999999999999999999999999998 44556788999999999999999999999999 899999999999


Q ss_pred             hHHHHHhcCCCcchhcchh
Q psy11394        107 VFSEEIKFYELGDVATNKF  125 (391)
Q Consensus       107 ~~~~E~~f~~l~~~~~e~~  125 (391)
                      .|++||+||+|++..++.+
T Consensus       108 ~l~eEa~fy~i~~l~l~~C  126 (140)
T 2nz0_B          108 AYDDELAFYGILPEIIGDC  126 (140)
T ss_dssp             HHHHHHHHHTCCGGGBCTT
T ss_pred             HHHHHHHHcCCChHHHHHH
Confidence            9999999999999888764

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=99.95  E-value=1.8e-28  Score=199.93  Aligned_cols=91  Identities=36%  Similarity=0.695  Sum_probs=84.1

Q ss_pred             eEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI  112 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~  112 (391)
                      +|+|||||++|+|+++||+++|+|+|++ ..+...+++++++|||||||++|++||||||+ |++++|+++|...|.+||
T Consensus         1 ~V~LNVGG~~f~t~~~TL~~~p~s~L~~-~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~-g~l~~p~~~~~~~l~~Ea   78 (105)
T 1nn7_A            1 LIVLNVSGTRFQTWQDTLERYPDTLLGS-SERDFFYHPETQQYFFDRDPDIFRHILNFYRT-GKLHYPRHECISAYDEEL   78 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHTSCSSSTTS-GGGGGGEEGGGTEEEECSCTTTHHHHHHHHHH-SCBCCCTTSCHHHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhcCCCccccc-cCCcccccCCCCcEEEeCCcHHHHHHHHHHhc-CCCCCCCCcCHHHHHHHH
Confidence            5899999999999999999999999998 34455788899999999999999999999999 899999999999999999


Q ss_pred             hcCCCcchhcchh
Q psy11394        113 KFYELGDVATNKF  125 (391)
Q Consensus       113 ~f~~l~~~~~e~~  125 (391)
                      +||+|++..++++
T Consensus        79 ~fy~i~~l~~~~c   91 (105)
T 1nn7_A           79 AFFGLIPEIIGDC   91 (105)
T ss_dssp             HHHTCCSCCBCHH
T ss_pred             HHcCCCHHHHHHH
Confidence            9999999887653

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=99.93  E-value=4.5e-27  Score=192.65  Aligned_cols=93  Identities=24%  Similarity=0.354  Sum_probs=80.5

Q ss_pred             CCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCC---CCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCC
Q psy11394         28 HDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF---DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP  104 (391)
Q Consensus        28 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~---~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~  104 (391)
                      ++.+++|+|||||++|+|+++||+++|+|+|+++.+....+   .+++++|||||||++|++||||||+ |++++|+++|
T Consensus         2 g~~~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~-g~l~~p~~~~   80 (107)
T 3drz_A            2 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRH-GKLVINKDLA   80 (107)
T ss_dssp             ---CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHH-SCCCCCTTSC
T ss_pred             CCCCCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCC-CeeCCCCCCC
Confidence            45678999999999999999999999999999886533221   2377899999999999999999999 8999999999


Q ss_pred             HHhHHHHHhcCCCcchh
Q psy11394        105 LDVFSEEIKFYELGDVA  121 (391)
Q Consensus       105 ~~~~~~E~~f~~l~~~~  121 (391)
                      ...+.+||+||+|++..
T Consensus        81 ~~~l~~Ea~fy~l~~L~   97 (107)
T 3drz_A           81 EEGVLEEAEFYNITSLI   97 (107)
T ss_dssp             HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHH
Confidence            99999999999998753

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=99.91  E-value=3.1e-25  Score=198.90  Aligned_cols=95  Identities=23%  Similarity=0.346  Sum_probs=83.3

Q ss_pred             CCCCCCceEEEEeCCeeeeecHHHhccCCCccccCccCCccCC---CCCCceeeecCCCCChHHHHhhhhcCCeeecCCC
Q psy11394         26 HDHDFCERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYF---DPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVN  102 (391)
Q Consensus        26 ~~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~---~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~  102 (391)
                      ..++.+++|+|||||++|+|+++||.++|+|+|+++......+   .+++++|||||||++|++||||||+ |++++|++
T Consensus         6 ~~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRt-G~L~lP~~   84 (202)
T 3drx_A            6 RPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRH-GKLVINKD   84 (202)
T ss_dssp             CSSCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHH-SCCCCCTT
T ss_pred             CCCCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcC-CccCCCCC
Confidence            3456778999999999999999999999999999886543222   2367899999999999999999999 89999999


Q ss_pred             CCHHhHHHHHhcCCCcchh
Q psy11394        103 VPLDVFSEEIKFYELGDVA  121 (391)
Q Consensus       103 ~~~~~~~~E~~f~~l~~~~  121 (391)
                      +|...|.+||+||+|++..
T Consensus        85 ~~~~~l~eEA~FygL~~Lv  103 (202)
T 3drx_A           85 LAEEGVLEEAEFYNITSLI  103 (202)
T ss_dssp             SCHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHCCcHHHH
Confidence            9999999999999998853

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.89  E-value=1.2e-25  Score=215.02  Aligned_cols=179  Identities=9%  Similarity=0.116  Sum_probs=152.9

Q ss_pred             hHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhh
Q psy11394        142 HEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFL  221 (391)
Q Consensus       142 ~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~  221 (391)
                      +++|+++|.++++       +.++.+++++|++|++.++++|.++...                   .....+.++|.+|
T Consensus        17 ~~~r~~~~~i~~~-------~~f~~~i~~li~l~~i~~~~~~~~~~~~-------------------~~~~~l~~~e~~~   70 (285)
T 3rvy_A           17 SHMYLRITNIVES-------SFFTKFIIYLIVLNGITMGLETSKTFMQ-------------------SFGVYTTLFNQIV   70 (285)
T ss_dssp             --CHHHHHHHHTS-------HHHHHHHHHHHHHHHHHHHHTTCTTHHH-------------------HSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcC-------HHHHHHHHHHHHHHHHHHHHhcCcccch-------------------HHHHHHHHHHHHH
Confidence            4489999999986       4699999999999999999999875443                   2345788999999


Q ss_pred             hhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecc
Q psy11394        222 IMPSLYCLLTSLL-----LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYG  296 (391)
Q Consensus       222 ~~~F~~E~llRl~-----f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGyg  296 (391)
                      +++|++|+++|++     |++++||++|+++++|.++...                        .            +..
T Consensus        71 ~~iF~~E~~lrl~~~~~~y~~~~wn~~Dl~~v~~~~i~~~------------------------~------------~~~  114 (285)
T 3rvy_A           71 ITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTS------------------------S------------GFE  114 (285)
T ss_dssp             HHHHHHHHHHHHHTTGGGGGGCHHHHHHHHHHHHHHSCSS------------------------S------------SCT
T ss_pred             HHHHHHHHHHHHHHHhHHHHcCChHHhHHHHHHHHHHccc------------------------c------------hHH
Confidence            9999999999999     9999999999999999764320                        0            011


Q ss_pred             cceecccccceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhh
Q psy11394        297 DMRCGAFFERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAF  376 (391)
Q Consensus       297 d~r~~r~lg~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~al  376 (391)
                      -+|.+|++  |++|+.|..+++ +      .+..++.++.+.++.++++++++++++|.+.+.++++.++.+|+++++|+
T Consensus       115 ~lr~~Ril--R~lrl~~~~~~l-~------~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~  185 (285)
T 3rvy_A          115 ILRVLRVL--RLFRLVTAVPQM-R------KIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESF  185 (285)
T ss_dssp             HHHHHGGG--GGGHHHHSSTTH-H------HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHH--HHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHH
Confidence            17888888  999999999998 7      78888889999999999999999999999888888877777899999999


Q ss_pred             hhhhhhhcccccC-CC
Q psy11394        377 WWAVVTMTTVGYG-DM  391 (391)
Q Consensus       377 ywaivT~tTVGYG-Di  391 (391)
                      ||+++|+||+||| |+
T Consensus       186 ~~~~~~~T~~g~~~di  201 (285)
T 3rvy_A          186 YTLFQVMTLESWSMGI  201 (285)
T ss_dssp             HHHHHHHTTTTCCCCC
T ss_pred             HHHHHHHHhCCCcHHH
Confidence            9999999999999 86

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.87  E-value=1.8e-24  Score=212.91  Aligned_cols=171  Identities=23%  Similarity=0.289  Sum_probs=137.8

Q ss_pred             ccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHH
Q psy11394        153 EYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTS  232 (391)
Q Consensus       153 e~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llR  232 (391)
                      ++|.|    ++++.+++++|++|+++++++|.|+.+.                   .....+.+++.++.+.|++|+++|
T Consensus         3 ~~p~s----~~f~~~~~~~i~ls~~~~~~~t~~~~~~-------------------~~~~~~~~~~~~~~~~f~~e~~~r   59 (355)
T 3beh_A            3 VLPFL----RIYAPLNAVLAAPGLLAVAALTIPDMSG-------------------RSRLALAALLAVIWGAYLLQLAAT   59 (355)
T ss_dssp             ----C----CSSSSHHHHHHHHHHHHHHHHTSSSCCH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchh----HHHHHHHHHHHHHHHHHHHHHcccchhh-------------------hHHHHHHHHHhHHHHHHHHHHHHh
Confidence            35654    5789999999999999999999987654                   122345677778878899999999


Q ss_pred             HH-------HHHHHHHHHHHHHH-HHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccc
Q psy11394        233 LL-------LYSVVMIYVHVLIP-ILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFF  304 (391)
Q Consensus       233 l~-------f~~~~~~iiDll~i-lp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~l  304 (391)
                      ++       |+++++|++|++++ +|++..+..                                    |....|.+|++
T Consensus        60 ~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~~~------------------------------------~~~~~r~lr~~  103 (355)
T 3beh_A           60 LLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLD------------------------------------GSPDWSLYCAV  103 (355)
T ss_dssp             HHCCCSCSSCCCHHHHHHHHHHHHHHHHHHHSC------------------------------------CSGGGGGGGGG
T ss_pred             cccccccceeccCcchHHHHHHHHHHHHHHHhc------------------------------------cchhHHHHHHH
Confidence            98       67799999999999 587654310                                    00116888888


Q ss_pred             cceeeeehhHHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhc
Q psy11394        305 ERGVFCRSRLRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMT  384 (391)
Q Consensus       305 g~RilkL~r~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~t  384 (391)
                        |++|+.|+.+++ +      .+.+++.++.+.+..+++.++++++++|+++|.+|+..++++|.++++|+||+++|||
T Consensus       104 --R~lrl~r~~~~~-~------~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~t  174 (355)
T 3beh_A          104 --WLLKPLRDSTFF-P------VLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLS  174 (355)
T ss_dssp             --GGSHHHHTCSSH-H------HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhhee
Confidence              999999998888 7      7777777778888888888888889999999999998877789999999999999999


Q ss_pred             ccccCCC
Q psy11394        385 TVGYGDM  391 (391)
Q Consensus       385 TVGYGDi  391 (391)
                      ||||||+
T Consensus       175 tvGygd~  181 (355)
T 3beh_A          175 TTGYGDT  181 (355)
T ss_dssp             TCCCSSS
T ss_pred             ecCCCCC
Confidence            9999996

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.87  E-value=3.4e-24  Score=197.64  Aligned_cols=170  Identities=20%  Similarity=0.244  Sum_probs=120.2

Q ss_pred             hhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-------H
Q psy11394        163 VVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-------L  235 (391)
Q Consensus       163 ~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-------f  235 (391)
                      .++.+++++|++|++.+++|+.++.+.                   .....+.++|.+|.++|++|+++|++       |
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~~~~-------------------~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y   69 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGY   69 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTT-------------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccCh-------------------hhhhHHHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence            489999999999999999999876543                   35578899999999999999999998       8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHH
Q psy11394        236 YSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR  315 (391)
Q Consensus       236 ~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~  315 (391)
                      +++  |++|+++++|+++.......               ....                ..+|.+|++  |++|+.|..
T Consensus        70 ~~~--~iiDllailP~~~~~~~~~~---------------~~~~----------------~~lr~lRll--RllR~~r~~  114 (223)
T 1orq_C           70 VKK--TLYEIPALVPAGLLALIEGH---------------LAGL----------------GLFRLVRLL--RFLRILLII  114 (223)
T ss_dssp             HHH--HHHHCTTHHHHHHHHHHHHH---------------HHTT----------------TCHHHHHHH--HHHHHHHHH
T ss_pred             HHH--hHHHHHHHHHHHHHHHHhcc---------------hhHH----------------HHHHHHHHH--HHHHHHHHH
Confidence            887  99999999999876531100               0000                003444444  444444433


Q ss_pred             HHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        316 KFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       316 ~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +.. +...  ..+...++.  ..+..+++.+++.++++++++|.+|++.+++++.++++|+||+++|||||||||+
T Consensus       115 ~~~-~~~~--~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi  185 (223)
T 1orq_C          115 SRG-SKFL--SAIADAADK--IRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDV  185 (223)
T ss_dssp             HSC-SSHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSS
T ss_pred             HHH-HHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCC
Confidence            211 1000  012222211  2344455666667778888999999877778899999999999999999999996

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.79  E-value=3.9e-21  Score=177.91  Aligned_cols=168  Identities=10%  Similarity=0.071  Sum_probs=140.1

Q ss_pred             hhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH------
Q psy11394        161 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------  234 (391)
Q Consensus       161 a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~------  234 (391)
                      ++.++.++.++|++|++.++++|+|..+.                    ....+..+|.+|+++|++|+++|++      
T Consensus        11 ~~~f~~~i~~~I~ln~i~l~~~~~~~~~~--------------------~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~   70 (229)
T 4dxw_A           11 NRIFQFTVVSIIILNAVLIGATTYELDPL--------------------FLETIHLLDYGITIFFVIEILIRFIGEKQKA   70 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTTCCSSSCHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CchHHHHHHHHHHHHHHHHHHccCCCChH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchh
Confidence            36799999999999999999999763332                    3356789999999999999999998      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehh
Q psy11394        235 -LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSR  313 (391)
Q Consensus       235 -f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r  313 (391)
                       |++++||++|++++++.++....                    +       ...++       +|.+|++  |++|+.|
T Consensus        71 ~y~~~~wni~D~~~v~~~~i~~~~--------------------~-------~~~~~-------lr~~Ril--R~lrl~~  114 (229)
T 4dxw_A           71 DFFKSGWNIFDTVIVAISLIPIPN--------------------N-------SSFLV-------LRLLRIF--RVLRLIS  114 (229)
T ss_dssp             ----CHHHHHHHHHHHHTTCC-----------------------------------C-------CTTHHHH--HHTTHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHhhcCc--------------------c-------HHHHH-------HHHHHHH--HHHHHHH
Confidence             99999999999999886643210                    0       01122       7889999  9999999


Q ss_pred             HHHHHHHHhhhhcccccccCccchhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        314 LRKFLLQEYSRCFLVGKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       314 ~~~~l~~~~~~~~~l~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +.+++ +      .+.+++.++.+.++.+.+++++.++++|.+.+.++++.++++|+++++|+||.+.++||.||+|+
T Consensus       115 ~~~~l-~------~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i  185 (229)
T 4dxw_A          115 VIPEL-K------QIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETV  185 (229)
T ss_dssp             HCHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHH
T ss_pred             HhHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHH
Confidence            99999 8      88899999999999999999999999999988888888888999999999999999999999984

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.44  E-value=1.5e-14  Score=125.61  Aligned_cols=49  Identities=39%  Similarity=0.609  Sum_probs=41.6

Q ss_pred             hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++.+.+.+++++.++|.+|...++++|.++++|+||+++|+|||||||+
T Consensus        56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi  104 (155)
T 2a9h_A           56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDL  104 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCC
Confidence            3444455667788889999888888999999999999999999999996

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=99.41  E-value=1.3e-15  Score=129.07  Aligned_cols=118  Identities=11%  Similarity=0.043  Sum_probs=94.7

Q ss_pred             hhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH------
Q psy11394        161 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL------  234 (391)
Q Consensus       161 a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~------  234 (391)
                      ++.++.+++++|++|++.+++||+|+.+.                   .....+.++|.+|+++|++||++|++      
T Consensus         5 ~~~f~~~i~~lIlls~~~~~~et~~~~~~-------------------~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~   65 (132)
T 1ors_C            5 HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPA   65 (132)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhchhhhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            46799999999999999999999986654                   13356789999999999999999999      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehh
Q psy11394        235 -LYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSR  313 (391)
Q Consensus       235 -f~~~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r  313 (391)
                       |++  ||++|+++++|+++.+...  +             .         ..++++       +|.+|++  |++|+.|
T Consensus        66 ~y~~--~niiDllailp~~~~~~~~--~-------------~---------l~~lr~-------lRllRv~--Rvlkl~r  110 (132)
T 1ors_C           66 GYVK--KTLYEIPALVPAGLLALIE--G-------------H---------LAGLGL-------FRLVRLL--RFLRILL  110 (132)
T ss_dssp             TTTT--TCGGGTGGGSCHHHHHHHH--H-------------H---------HHHTTC-------HHHHHHH--HHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHhc--c-------------h---------HHHHHH-------HHHHHHH--HHHHHHH
Confidence             777  9999999999999877530  0             0         012223       6777888  8899999


Q ss_pred             HHHHHHHHhhhhcccccccCccchhh
Q psy11394        314 LRKFLLQEYSRCFLVGKSIPDAFWWA  339 (391)
Q Consensus       314 ~~~~l~~~~~~~~~l~~~l~~s~~~l  339 (391)
                      +.+++ +      .+.+++.++.+++
T Consensus       111 ~~~~l-~------~l~~~l~~s~~~l  129 (132)
T 1ors_C          111 IISRG-S------KFLSAIADAADKL  129 (132)
T ss_dssp             HHHHH-H------HHHHHHHHHHHHH
T ss_pred             HhhHH-H------HHHHHHHHHHHHh
Confidence            99999 8      8888888777765

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.32  E-value=2.2e-14  Score=137.50  Aligned_cols=105  Identities=21%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             cccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHhh---------------hhc-cc-----ccccCccc
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEYS---------------RCF-LV-----GKSIPDAF  336 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~~---------------~~~-~l-----~~~l~~s~  336 (391)
                      ++++++||+++|+|||||||+.|.+..| |++...-..-++ -.+.               ... .+     ........
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~g-k~~~i~~~l~Gi-~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~~  192 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNVALRTDAG-RLFCIFYALVGI-PLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPEL  192 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSSCCCSHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CCH
T ss_pred             ChhhhhHhhheeeeecccCCCCCCCccc-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchhH
Confidence            7889999999999999999999999998 887663333222 1000               000 00     00001111


Q ss_pred             hhhh----hhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        337 WWAV----VTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       337 ~~l~----~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ..+.    .+++.+++.+++.+.+.+..|.       -++.||+||+++|+|||||||+
T Consensus       193 ~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~-------~~~~da~y~~~vTltTvGyGd~  244 (309)
T 3um7_A          193 VRVLSAMLFLLIGCLLFVLTPTFVFCYMED-------WSKLEAIYFVIVTLTTVGFGDY  244 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhheeccccCCC
Confidence            1111    1111112222223333445552       4788999999999999999996

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=99.32  E-value=1.8e-13  Score=117.84  Aligned_cols=88  Identities=13%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             chHHHHHHHHHhccCCCChhhhhhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhh
Q psy11394        141 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETF  220 (391)
Q Consensus       141 ~~~~r~~i~~~le~P~ss~~a~~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v  220 (391)
                      .+++|+++|+++|+|.       ++.++.+++++|++.++++|.++.+.                   .....+..+|.+
T Consensus         7 ~~~~~~~~~~~~e~~~-------f~~~i~~lil~sv~~v~~et~~~i~~-------------------~~~~~~~~id~~   60 (147)
T 2kyh_A            7 LGGRVRNIGDVMEHPL-------VELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLI   60 (147)
T ss_dssp             CSHHHHHHHHHHTCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCH-------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCch-------HHHHHHHHHHHHHHHHHHHHhHhhch-------------------hHHHHHHHHHHH
Confidence            5679999999999864       99999999999999999999876543                   123457899999


Q ss_pred             hhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy11394        221 LIMPSLYCLLTSLL-------LYSVVMIYVHVLIPILMYIFAG  256 (391)
Q Consensus       221 ~~~~F~~E~llRl~-------f~~~~~~iiDll~ilp~~~~~~  256 (391)
                      |+++|++||++|++       |+++  |++|+++++|++..+.
T Consensus        61 ~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~  101 (147)
T 2kyh_A           61 LVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLAL  101 (147)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            99999999999999       8887  9999999999997764

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.27  E-value=4.8e-14  Score=133.18  Aligned_cols=107  Identities=18%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             ccccccceeeEEEEEEeecccceecccccceeeeehhHHHHHHHHh-------h-hhccc-----ccccC------cc--
Q psy11394        277 KSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKFLLQEY-------S-RCFLV-----GKSIP------DA--  335 (391)
Q Consensus       277 ~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~l~~~~-------~-~~~~l-----~~~l~------~s--  335 (391)
                      -++++++||+++|+|||||||+.|.+..| |++...-..-++ -..       . +....     ...+.      +.  
T Consensus        92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~G-k~f~~~~~l~Gi-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  169 (280)
T 3ukm_A           92 WDFTSALFFASTVLSTTGYGHTVPLSDGG-KAFCIIYSVIGI-PFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVV  169 (280)
T ss_dssp             SSHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSTTTTTC------CCHHH
T ss_pred             CChhcchhheeeeeeccccCCcCCCCchh-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence            38899999999999999999999999998 887664322222 100       0 00000     00000      00  


Q ss_pred             -chhhhhhhhhhhhhhhcccceee-eeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        336 -FWWAVVTMTTVGYGVVLFSSAVY-FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       336 -~~~l~~~~~~l~i~i~~~a~~~y-~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                       .....++.+.+.++.++.+.++| .+|.+      -++.||+||+++|+|||||||+
T Consensus       170 ~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~------~s~~da~y~~~iTltTvGyGD~  221 (280)
T 3ukm_A          170 AIVHAVLLGFVTVSCFFFIPAAVFSVLEDD------WNFLESFYFCFISLSTIGLGDY  221 (280)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHSSS------CCHHHHHHHHHHHHTTCCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcC------CchhhhhhheeeeeecccCCCC
Confidence             01111222233333344444444 45632      4788999999999999999996

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.23  E-value=1.2e-12  Score=109.18  Aligned_cols=49  Identities=33%  Similarity=0.513  Sum_probs=41.1

Q ss_pred             hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +..+.+.+++++.++|.+|++.+++++.++.||+||+++|+|||||||+
T Consensus        33 ~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi   81 (122)
T 2ih3_C           33 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDL   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCC
Confidence            3344455566777888899888888899999999999999999999996

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.00  E-value=9e-11  Score=94.79  Aligned_cols=53  Identities=38%  Similarity=0.497  Sum_probs=44.0

Q ss_pred             hhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        339 AVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       339 l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +...++.+++.+++++.+++.+|+..+++.+.++.+|+||+++|+|||||||+
T Consensus         8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi   60 (103)
T 2k1e_A            8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDR   60 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCC
Confidence            33345555566677788888999888888899999999999999999999996

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=98.91  E-value=2.7e-10  Score=96.93  Aligned_cols=55  Identities=33%  Similarity=0.474  Sum_probs=46.5

Q ss_pred             hhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        337 WWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       337 ~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +.+...++.+++.+++++.++|..|.+.+++.+.++.+|+||+++|+|||||||+
T Consensus         6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~   60 (139)
T 3eff_K            6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL   60 (139)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCC
Confidence            3445556666677778888899999988888899999999999999999999996

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=98.88  E-value=3.2e-10  Score=99.49  Aligned_cols=51  Identities=33%  Similarity=0.551  Sum_probs=41.8

Q ss_pred             hhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        341 VTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       341 ~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .+++.+++++++++.++|..|.+.+++.+.++.+|+||+++|+|||||||+
T Consensus        37 ~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi   87 (166)
T 3pjs_K           37 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL   87 (166)
T ss_dssp             TTSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCC
Confidence            334445556666777888889887777889999999999999999999996

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=98.81  E-value=8.2e-10  Score=93.79  Aligned_cols=44  Identities=41%  Similarity=0.796  Sum_probs=33.8

Q ss_pred             hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++++++++++++..+++.|.     .+.+|+||+||+++|||||||||+
T Consensus        20 l~~~~~~~~~~~~~~~~~e~-----~~~~~~~a~y~~~~T~tTvGyGDi   63 (137)
T 4h33_A           20 LMIFVLLVIIIPVPMVFIEP-----EINNYPDALWWAIVTATTVGYGDI   63 (137)
T ss_dssp             HHHHHHHHHHTHHHHHHHCS-----SCCSHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcccCCCC
Confidence            33444445566666777764     467899999999999999999996

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=98.59  E-value=9.5e-09  Score=99.57  Aligned_cols=63  Identities=21%  Similarity=0.213  Sum_probs=47.8

Q ss_pred             ccccCccchhhhhhhhhhhhhhhcccceeeeeccC-CCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        329 GKSIPDAFWWAVVTMTTVGYGVVLFSSAVYFAEAG-SENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       329 ~~~l~~s~~~l~~~~~~l~i~i~~~a~~~y~~E~~-~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ...+..+.+.+..+++++.+++.+++.++|++|.+ .++..+.+|.+|+||+++|+|||||||+
T Consensus        53 ~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi  116 (333)
T 1p7b_A           53 YWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM  116 (333)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCC
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCC
Confidence            34556677777777766666666666667888765 2344678999999999999999999996

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=98.53  E-value=1.5e-08  Score=96.96  Aligned_cols=60  Identities=32%  Similarity=0.419  Sum_probs=41.8

Q ss_pred             ccCccchhhhhhhhhhhh-hhhcccceeeeecc-CCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        331 SIPDAFWWAVVTMTTVGY-GVVLFSSAVYFAEA-GSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       331 ~l~~s~~~l~~~~~~l~i-~i~~~a~~~y~~E~-~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .+..+.+.+.++++++.+ ..+++|.+ |+++. ..++..+.++.+|+||+++|+|||||||+
T Consensus        41 ~l~~~~~~ll~~~~~~~~~~~l~fa~l-y~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi  102 (301)
T 1xl4_A           41 LLTVSWPVFITLITGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL  102 (301)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHH-HHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCCCCcCCHHHHHHHhhhheeccCCCCC
Confidence            344555665555444433 33666776 55553 34455789999999999999999999996

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=98.45  E-value=3.1e-08  Score=78.90  Aligned_cols=43  Identities=33%  Similarity=0.526  Sum_probs=30.9

Q ss_pred             hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .+.+++++++.+.+.|..+++      .++.||+||+++|+|||||||+
T Consensus        10 ~~~~~~~~~~~g~~~~~~~e~------~~~~~a~yf~~~T~tTvGyGdi   52 (97)
T 3ouf_A           10 LFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDF   52 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTTCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCC
Confidence            334444445555666654432      5789999999999999999996

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=98.43  E-value=3.7e-08  Score=75.97  Aligned_cols=32  Identities=38%  Similarity=0.702  Sum_probs=25.5

Q ss_pred             ccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        353 FSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       353 ~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .+...+..|+       .++.||+||+++|+|||||||+
T Consensus        17 g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi   48 (82)
T 3ldc_A           17 GTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDY   48 (82)
T ss_dssp             HHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCCSS
T ss_pred             HHHHHHHHhc-------CCHHHHHHHHHHHhcccCCCCC
Confidence            3334446664       3899999999999999999996

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=98.41  E-value=2.9e-08  Score=81.50  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             hhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        344 TTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       344 ~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +.++++.++++.++|..+++      .++.||+||+++|+|||||||+
T Consensus        28 ~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~T~tTvGyGdi   69 (114)
T 2q67_A           28 FVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNF   69 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHhcceeCCCC
Confidence            33334445556666654432      4889999999999999999996

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=98.40  E-value=4.3e-08  Score=84.13  Aligned_cols=43  Identities=28%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             hhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        343 MTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       343 ~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      .+.+++++++++.++|....+      .++.||+||+++|+|||||||+
T Consensus        30 ~~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~t~tTvGyGd~   72 (148)
T 3vou_A           30 LFVLTFLTLTSGTIFYSTVEG------LRPLDALYFSVVTLTTVGDGNF   72 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCC
Confidence            344444455556666654332      4899999999999999999996

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=98.37  E-value=4.8e-09  Score=90.88  Aligned_cols=46  Identities=41%  Similarity=0.652  Sum_probs=40.8

Q ss_pred             hhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394        260 FSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       260 ~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      .+..+|++|+..+++.|.++++++||+++|+|||||||+.|.+..|
T Consensus        66 ~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g  111 (155)
T 2a9h_A           66 GSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG  111 (155)
T ss_dssp             HHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH
T ss_pred             HHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhH
Confidence            3445677888888889999999999999999999999999999885

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.35  E-value=5.9e-08  Score=93.62  Aligned_cols=42  Identities=29%  Similarity=0.426  Sum_probs=32.1

Q ss_pred             hhhhcccceeeeeccCCCCCCCC--CcchhhhhhhhhhcccccCCC
Q psy11394        348 YGVVLFSSAVYFAEAGSENSFFK--SIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       348 i~i~~~a~~~y~~E~~~~~~~f~--s~~~alywaivT~tTVGYGDi  391 (391)
                      +.++++|  .++.|.+....++.  ++.+|+||+++|||||||||+
T Consensus        55 ~~~~~fa--~~~~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi   98 (321)
T 2qks_A           55 LLNTAFA--TLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDM   98 (321)
T ss_dssp             HHHHHHH--HHHHTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSS
T ss_pred             HHHHHHH--HHHHcCCccccCcCCcchhheeeeeeEEeccccCCCc
Confidence            3444555  22566655556777  999999999999999999996

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=98.32  E-value=1.7e-08  Score=81.28  Aligned_cols=48  Identities=38%  Similarity=0.486  Sum_probs=40.5

Q ss_pred             eEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394        263 TVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR  311 (391)
Q Consensus       263 ~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL  311 (391)
                      ..|+.|+..+++.+.++.+++||+++|+|||||||+.|.+..| |++-.
T Consensus        25 ~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-r~~~~   72 (103)
T 2k1e_A           25 KAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG-RKVAE   72 (103)
T ss_dssp             HHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC-THHHH
T ss_pred             hhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH-HHHHH
Confidence            4456788778888999999999999999999999999999886 55433

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.28  E-value=5.3e-08  Score=100.02  Aligned_cols=97  Identities=42%  Similarity=0.692  Sum_probs=67.2

Q ss_pred             CCCChhHhhhhhhhhhHHHHHHH-----------------H---HH----------HHHHHHH-------HHHHHHHHHH
Q psy11394        209 DITDPFFLIETFLIMPSLYCLLT-----------------S---LL----------LYSVVMI-------YVHVLIPILM  251 (391)
Q Consensus       209 ~~~~~~~~ie~v~~~~F~~E~ll-----------------R---l~----------f~~~~~~-------iiDll~ilp~  251 (391)
                      .+...++++|.++++.+.+++++                 |   ++          +.+..-.       .+.-+..+.+
T Consensus       269 Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~  348 (514)
T 2r9r_B          269 FFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIF  348 (514)
T ss_dssp             STTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46678899999999988776542                 2   22          1111001       1111222223


Q ss_pred             HHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394        252 YIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       252 ~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      ++.+++.+++..+|+.|...++..|.++++++||+++|||||||||+.|.+..|
T Consensus       349 ~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~g  402 (514)
T 2r9r_B          349 FLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG  402 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHH
T ss_pred             HHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcch
Confidence            333444556777788888888899999999999999999999999999999885

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=98.28  E-value=1.1e-08  Score=85.12  Aligned_cols=49  Identities=33%  Similarity=0.561  Sum_probs=41.2

Q ss_pred             hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeee
Q psy11394        261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFC  310 (391)
Q Consensus       261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Rilk  310 (391)
                      +...|+.|++.+++.+.++++++||+++|+|||||||+.|.+..| |++-
T Consensus        44 a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-r~~~   92 (122)
T 2ih3_C           44 SYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG-RLVA   92 (122)
T ss_dssp             HHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-HHHH
T ss_pred             HHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH-HHHH
Confidence            334566788888888999999999999999999999999999885 4433

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=98.22  E-value=8.4e-08  Score=87.60  Aligned_cols=47  Identities=43%  Similarity=0.622  Sum_probs=41.2

Q ss_pred             hhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394        259 LFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       259 ~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      ..+...|+.|++.+++.+.++++++||+++|||||||||+.|.+..|
T Consensus       146 ~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~  192 (223)
T 1orq_C          146 YGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG  192 (223)
T ss_dssp             HHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH
T ss_pred             HHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH
Confidence            34556677888778888999999999999999999999999999885

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=98.11  E-value=4.3e-08  Score=83.18  Aligned_cols=47  Identities=34%  Similarity=0.624  Sum_probs=40.0

Q ss_pred             ceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceee
Q psy11394        262 STVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF  309 (391)
Q Consensus       262 ~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril  309 (391)
                      ...|+.|+..+++.+.++.+++||+++|+|||||||+.|.+..| |++
T Consensus        24 ~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~-r~~   70 (139)
T 3eff_K           24 YLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-RLV   70 (139)
T ss_dssp             HHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH-HHH
T ss_pred             HHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH-HHH
Confidence            34566788778888899999999999999999999999999885 443

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=98.07  E-value=4.5e-08  Score=82.97  Aligned_cols=30  Identities=50%  Similarity=0.922  Sum_probs=28.0

Q ss_pred             cccccccceeeEEEEEEeecccceeccccc
Q psy11394        276 FKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       276 f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      +.++++++||+++|||||||||+.|.+..|
T Consensus        41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g   70 (137)
T 4h33_A           41 INNYPDALWWAIVTATTVGYGDIVPVTPIG   70 (137)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCSSSCCCSHHH
T ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCCCHhH
Confidence            568899999999999999999999999986

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.02  E-value=7.9e-07  Score=86.02  Aligned_cols=40  Identities=35%  Similarity=0.748  Sum_probs=29.1

Q ss_pred             hhhhhhhcccceee-eeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        345 TVGYGVVLFSSAVY-FAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       345 ~l~i~i~~~a~~~y-~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++++++++++.++| .+|.       .++.+|+||+++|+|||||||+
T Consensus        25 ~~~~~~~~~~~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~   65 (336)
T 1lnq_A           25 LLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDY   65 (336)
T ss_dssp             TTTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhhcccCCCC
Confidence            33334445555555 5553       3788999999999999999996

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.02  E-value=1.2e-07  Score=92.65  Aligned_cols=54  Identities=37%  Similarity=0.652  Sum_probs=45.3

Q ss_pred             HHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394        257 VVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR  311 (391)
Q Consensus       257 ~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL  311 (391)
                      +..++...|++|+..+++.|.++++++||+++|||||||||+.|.+..| |++-.
T Consensus       140 ~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~-~~~~~  193 (355)
T 3beh_A          140 LFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG-RVLAG  193 (355)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH-HHHHH
T ss_pred             HHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH-HHHHH
Confidence            3445566778888888888999999999999999999999999999886 65543

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=97.85  E-value=4.1e-07  Score=79.50  Aligned_cols=50  Identities=34%  Similarity=0.591  Sum_probs=41.0

Q ss_pred             hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeee
Q psy11394        261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR  311 (391)
Q Consensus       261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL  311 (391)
                      +...|+.|...+++.+.++.+++||+++|+|||||||+.|.+..| |++-.
T Consensus        50 a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~-r~~~~   99 (166)
T 3pjs_K           50 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-RLVAV   99 (166)
T ss_dssp             SSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTT-TTTTH
T ss_pred             HHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhH-HHHHH
Confidence            335566777777788899999999999999999999999999886 44433

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=97.80  E-value=3.5e-06  Score=81.57  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=22.6

Q ss_pred             CCCCcchhhhhhhhhhcccccCCC
Q psy11394        368 FFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       368 ~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++.++.+|+||+++|+|||||||+
T Consensus        88 ~~~sf~~af~fSv~T~TTvGYGd~  111 (340)
T 3sya_A           88 NLNGFVSAFLFSIETETTIGYGYR  111 (340)
T ss_dssp             CCCSTTHHHHHHHHHHSCCCCSSS
T ss_pred             cccCHHHHHhhhheeeeeecCCCc
Confidence            578999999999999999999996

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.76  E-value=3.3e-06  Score=87.45  Aligned_cols=22  Identities=36%  Similarity=0.886  Sum_probs=20.6

Q ss_pred             CCcchhhhhhhhhhcccccCCC
Q psy11394        370 KSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       370 ~s~~~alywaivT~tTVGYGDi  391 (391)
                      .++.+|+||+++|+|||||||+
T Consensus        50 ~~~~~~~y~~~~t~tTvGygd~   71 (565)
T 4gx0_A           50 YSFMAGIYWTITVMTTLGFGDI   71 (565)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCSS
T ss_pred             CchhhhhheeeeeeeeecCCCc
Confidence            3889999999999999999996

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=97.64  E-value=8.5e-06  Score=78.94  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=22.5

Q ss_pred             CCCCcchhhhhhhhhhcccccCCC
Q psy11394        368 FFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       368 ~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++.++.+|+||+++|+|||||||+
T Consensus        91 ~~~sf~~af~fSv~T~TTvGYGd~  114 (343)
T 3spc_A           91 QVNGFVAAFLFSIETQTTIGYGFR  114 (343)
T ss_dssp             TCCSHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccCCHHHHhheeeeeeEeecCCCc
Confidence            578999999999999999999996

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=97.60  E-value=1.8e-06  Score=83.59  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=40.8

Q ss_pred             ceEEEEeeC-CCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHH
Q psy11394        262 STVYFAEAG-SDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRK  316 (391)
Q Consensus       262 ~~~y~~e~~-~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~  316 (391)
                      +++|++|.+ .++..+.++.+++||+++|+|||||||+.|.+..| |++-.+...-
T Consensus        79 ally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g-r~~~~~~~l~  133 (333)
T 1p7b_A           79 ALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA-HAIATLEIFV  133 (333)
T ss_dssp             HTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-HHHHHHHHHH
T ss_pred             HHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHH-HHHHHHHHHH
Confidence            355777765 23445778999999999999999999999999876 6555444333

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=97.51  E-value=2.5e-06  Score=81.61  Aligned_cols=46  Identities=24%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             CCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHH
Q psy11394        271 SDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKF  317 (391)
Q Consensus       271 ~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~  317 (391)
                      .++..+.++++++||+++|||||||||+.|.+..| |++-.+-...+
T Consensus        75 ~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~g-r~~~~~~~l~G  120 (301)
T 1xl4_A           75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLA-NTLVTLEALCG  120 (301)
T ss_dssp             STTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-HHHHHHHHHHH
T ss_pred             cCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHH-HHHHHHHHHHH
Confidence            34566889999999999999999999999999886 55544443333

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=97.49  E-value=2.6e-06  Score=69.76  Aligned_cols=28  Identities=39%  Similarity=0.546  Sum_probs=26.2

Q ss_pred             cccccceeeEEEEEEeecccceeccccc
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      +..+++||+++|+|||||||+.|.+..|
T Consensus        49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~g   76 (114)
T 2q67_A           49 RPIDALYFSVVTLTTVGAGNFSPQTDFG   76 (114)
T ss_dssp             CHHHHHHHHHHHHTSCCCSSCCCCSHHH
T ss_pred             CHHHHHHHHHHHhcceeCCCCccCCHhH
Confidence            6789999999999999999999999875

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=97.48  E-value=3.4e-06  Score=81.35  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             EeeCCCCCCcc--cccccceeeEEEEEEeecccceecccccceeeeehhHH
Q psy11394        267 AEAGSDQSFFK--SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLR  315 (391)
Q Consensus       267 ~e~~~~~~~f~--si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~  315 (391)
                      .|.+.....+.  ++++++||+++|||||||||+.|.+..| |++-.+-..
T Consensus        65 ~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g-r~~~~~~~l  114 (321)
T 2qks_A           65 MLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYA-HWIATLEIF  114 (321)
T ss_dssp             HTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHH-HHHHHHHHH
T ss_pred             HcCCccccCcCCcchhheeeeeeEEeccccCCCcCcccHHH-HHHHHHHHH
Confidence            45554556677  9999999999999999999999999886 655444333

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=97.37  E-value=4.7e-05  Score=71.68  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             CCCCCcchhhhhhhhhhcccccCCC
Q psy11394        367 SFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       367 ~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +.+ ++++|+||+++|+|||||||+
T Consensus        90 ~~w-~~~~a~yf~~~t~tTvGyGd~  113 (280)
T 3ukm_A           90 WNW-DFTSALFFASTVLSTTGYGHT  113 (280)
T ss_dssp             CCS-SHHHHHHHHHHHHTTCCCCSS
T ss_pred             CCC-ChhcchhheeeeeeccccCCc
Confidence            344 899999999999999999996

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=97.36  E-value=4.2e-05  Score=73.06  Aligned_cols=21  Identities=33%  Similarity=0.816  Sum_probs=20.3

Q ss_pred             CcchhhhhhhhhhcccccCCC
Q psy11394        371 SIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       371 s~~~alywaivT~tTVGYGDi  391 (391)
                      +|.+|+||+++|+|||||||+
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi  135 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNV  135 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSS
T ss_pred             ChhhhhHhhheeeeecccCCC
Confidence            899999999999999999996

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=97.10  E-value=7.2e-06  Score=62.97  Aligned_cols=32  Identities=34%  Similarity=0.577  Sum_probs=27.9

Q ss_pred             cccccceeeEEEEEEeecccceecccccceeee
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFC  310 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg~Rilk  310 (391)
                      +..+++||+++|+|||||||+.|.+..| |++-
T Consensus        28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~-r~~~   59 (82)
T 3ldc_A           28 SWTVSLYWTFVTIATVGYGDYSPHTPLG-MYFT   59 (82)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHHH
T ss_pred             CHHHHHHHHHHHhcccCCCCCCCCCccH-HHHH
Confidence            7789999999999999999999998885 4443

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=96.98  E-value=9.9e-06  Score=69.24  Aligned_cols=28  Identities=39%  Similarity=0.542  Sum_probs=26.3

Q ss_pred             cccccceeeEEEEEEeecccceeccccc
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      ++.+++||+++|+|||||||+.|.+..|
T Consensus        52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~   79 (148)
T 3vou_A           52 RPLDALYFSVVTLTTVGDGNFSPQTDFG   79 (148)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCCCCSHHH
T ss_pred             CHHHHHHHHHHHHHccCCCCCCCCCccH
Confidence            7889999999999999999999999885

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=96.91  E-value=1.4e-05  Score=63.28  Aligned_cols=32  Identities=44%  Similarity=0.679  Sum_probs=27.7

Q ss_pred             ccccccceeeEEEEEEeecccceecccccceee
Q psy11394        277 KSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF  309 (391)
Q Consensus       277 ~si~~~~w~~iit~TTvGygd~r~~r~lg~Ril  309 (391)
                      -+..+++||+++|+|||||||+.|.+..| |++
T Consensus        31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~g-r~~   62 (97)
T 3ouf_A           31 LRPIDALYFSVVTLTTVGYGDFSPQTDFG-KIF   62 (97)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCCccH-HHH
Confidence            36789999999999999999999998885 443

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=96.26  E-value=6.5e-05  Score=70.87  Aligned_cols=40  Identities=10%  Similarity=0.032  Sum_probs=32.8

Q ss_pred             EEEeeCCCCCCcccccccceeeEEEEEEeecc-cce-ecccc
Q psy11394        265 YFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYG-DMR-CGAFF  304 (391)
Q Consensus       265 y~~e~~~~~~~f~si~~~~w~~iit~TTvGyg-d~r-~~r~l  304 (391)
                      +..+.+.+++.|.|+|+++||++.++||+||| |+. |.+..
T Consensus       167 ~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~  208 (285)
T 3rvy_A          167 TQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEV  208 (285)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTT
T ss_pred             HHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Confidence            34445666777999999999999999999999 984 77665

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.91  E-value=0.00021  Score=73.88  Aligned_cols=33  Identities=27%  Similarity=0.580  Sum_probs=28.6

Q ss_pred             cccccceeeEEEEEEeecccceecccccceeeee
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCR  311 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL  311 (391)
                      ++.+++||+++|||||||||+.|.+..| |++-.
T Consensus        51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~-~~~~~   83 (565)
T 4gx0_A           51 SFMAGIYWTITVMTTLGFGDITFESDAG-YLFAS   83 (565)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCSHHH-HHHHH
T ss_pred             chhhhhheeeeeeeeecCCCcCCCCccH-HHHHH
Confidence            6789999999999999999999999886 55433

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.56  E-value=0.00045  Score=66.49  Aligned_cols=31  Identities=35%  Similarity=0.620  Sum_probs=27.5

Q ss_pred             cccccceeeEEEEEEeecccceecccccceee
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF  309 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg~Ril  309 (391)
                      ++.+++||+++|+|||||||+.|.+..| |++
T Consensus        45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~-r~~   75 (336)
T 1lnq_A           45 SWTVSLYWTFVTIATVGYGDYSPSTPLG-MYF   75 (336)
T ss_dssp             CSSTTHHHHHHHHTTCCCSSCCCCCSSH-HHH
T ss_pred             CHHHHHHHHHHHhhcccCCCCCCCCcCH-HHH
Confidence            7889999999999999999999998875 443

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=95.55  E-value=0.00052  Score=66.30  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=25.3

Q ss_pred             CcccccccceeeEEEEEEeecccceec
Q psy11394        275 FFKSIPDAFWWAVVTMTTVGYGDMRCG  301 (391)
Q Consensus       275 ~f~si~~~~w~~iit~TTvGygd~r~~  301 (391)
                      .+.++++++||+++|+|||||||+.|.
T Consensus        88 ~~~sf~~af~fSv~T~TTvGYGd~~p~  114 (340)
T 3sya_A           88 NLNGFVSAFLFSIETETTIGYGYRVIT  114 (340)
T ss_dssp             CCCSTTHHHHHHHHHHSCCCCSSSCBC
T ss_pred             cccCHHHHHhhhheeeeeecCCCccCc
Confidence            468999999999999999999999996

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=95.14  E-value=0.0074  Score=49.30  Aligned_cols=81  Identities=17%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDV  107 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~  107 (391)
                      -|+|.|||+.|...+..|....   ..++.....      ...+++-+  |-+++.|+.+|+|+.+ |++..+++ ....
T Consensus        31 Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~------e~~~~i~l~~~~~~~~f~~ll~~~Yt-g~~~~~~~-~~~~  102 (127)
T 1r29_A           31 DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK------RNLSVINLDPEINPEGFNILLDFMYT-SRLNLREG-NIMA  102 (127)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT------TTCSEEECCTTSCHHHHHHHHHHHHH-SCCCCCTT-THHH
T ss_pred             CEEEEECCEEEehHHHHHHHhCHHHHHHhcCCcc------CCCCEEEeCCCCCHHHHHHHHHHHcC-CCcCcCHH-HHHH
Confidence            4778899999999999995442   233322111      13456777  6689999999999999 78876543 5666


Q ss_pred             HHHHHhcCCCcchh
Q psy11394        108 FSEEIKFYELGDVA  121 (391)
Q Consensus       108 ~~~E~~f~~l~~~~  121 (391)
                      +.+-|++|+++...
T Consensus       103 ll~~A~~~~i~~L~  116 (127)
T 1r29_A          103 VMATAMYLQMEHVV  116 (127)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCHHHH
Confidence            88999999997743

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=94.43  E-value=0.012  Score=47.13  Aligned_cols=77  Identities=16%  Similarity=0.334  Sum_probs=56.7

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeeec---CCCCChHHHHhhhhcCCeeecCCCCCHH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRLRRPVNVPLD  106 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~D---R~~~~F~~Il~y~r~~g~l~~p~~~~~~  106 (391)
                      -|++.|||++|...+..|...-   ..++...         ..+++-++   -+|+.|+.+|+|+.+ |++..+++ ...
T Consensus        24 Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---------~~~~i~l~~~~~~~~~f~~ll~~~Yt-~~~~~~~~-~v~   92 (116)
T 2vpk_A           24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---------SENNVFLDQSQVKADGFQKLLEFIYT-GTLNLDSW-NVK   92 (116)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---------CCSCEECCTTTCCHHHHHHHHHHHHH-SCCCCCTT-THH
T ss_pred             cEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---------CCCeEEeecCCCCHHHHHHHHHHHcC-CCcccCHH-HHH
Confidence            3678999999999999995442   2233221         23455454   689999999999999 78876544 566


Q ss_pred             hHHHHHhcCCCcch
Q psy11394        107 VFSEEIKFYELGDV  120 (391)
Q Consensus       107 ~~~~E~~f~~l~~~  120 (391)
                      .+.+-|++|+++..
T Consensus        93 ~ll~~A~~~~i~~L  106 (116)
T 2vpk_A           93 EIHQAADYLKVEEV  106 (116)
T ss_dssp             HHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCHHH
Confidence            68899999999764

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=94.23  E-value=0.018  Score=47.11  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=58.8

Q ss_pred             EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      |+|.|||+.|...+..|....   ..++...         ...++.+  |=+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus        36 v~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---------~~~~i~l~~~~~~~~f~~ll~~iYt-g~~~i~~~-~~~~l  104 (129)
T 3ga1_A           36 VSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---------RSAVVELPAAVQPQSFQQILSFCYT-GRLSMNVG-DQDLL  104 (129)
T ss_dssp             EEEEETTEEEEECHHHHHHHBHHHHHHHHHC---------CCSEEECCTTCCHHHHHHHHHHHHH-SEEECCTT-THHHH
T ss_pred             eEEEECCEEEEehHHHHHHcCHHHHHHHcCC---------CCCEEEECCCCCHHHHHHHHHHHhC-CccccCHH-HHHHH
Confidence            678899999999999996543   2222211         3456777  5689999999999999 89887655 46668


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus       105 l~~A~~~~i~~l~  117 (129)
T 3ga1_A          105 MYTAGFLQIQEIM  117 (129)
T ss_dssp             HHHHHHTTBTTSS
T ss_pred             HHHHHHhCCHHHH
Confidence            9999999997743

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=94.03  E-value=0.0021  Score=62.09  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=26.2

Q ss_pred             CcccccccceeeEEEEEEeecccceec--ccc
Q psy11394        275 FFKSIPDAFWWAVVTMTTVGYGDMRCG--AFF  304 (391)
Q Consensus       275 ~f~si~~~~w~~iit~TTvGygd~r~~--r~l  304 (391)
                      .+.++++++||++.|+|||||||+.|.  +..
T Consensus        91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~  122 (343)
T 3spc_A           91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPL  122 (343)
T ss_dssp             TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHH
T ss_pred             ccCCHHHHhheeeeeeEeecCCCccCCCCCHH
Confidence            467999999999999999999999974  454

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=93.84  E-value=0.027  Score=45.74  Aligned_cols=78  Identities=12%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeeec--CCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFFD--RNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~D--R~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      |+|.|||++|...+..|....   ..++....       .+..++-+.  =+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus        35 v~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~e~~~i~l~~~~~~~~f~~~l~~iYt-g~~~~~~~-~v~~l  105 (125)
T 3ohu_A           35 VTLIVERKEFRAHRAVLAACSEYFWQALVGQT-------KNDLVVSLPEEVTARGFGPLLQFAYT-AKLLLSRE-NIREV  105 (125)
T ss_dssp             EEEEETTEEEEECHHHHHHHBHHHHHHHTTCC-------CSSCEEECCTTCCHHHHHHHHHHHTT-SEEEECTT-THHHH
T ss_pred             eEEEECCEEEechHHHHHHcCHHHHHHhcCCC-------CCCcEEEeCCCCCHHHHHHHHHhHcC-CceEECHH-HHHHH
Confidence            778899999999999996543   22332211       123455553  489999999999999 89887654 55668


Q ss_pred             HHHHhcCCCcch
Q psy11394        109 SEEIKFYELGDV  120 (391)
Q Consensus       109 ~~E~~f~~l~~~  120 (391)
                      .+-|++|+++..
T Consensus       106 l~~A~~l~i~~L  117 (125)
T 3ohu_A          106 IRCAEFLRMHNL  117 (125)
T ss_dssp             HHHHHHHTBSSC
T ss_pred             HHHHHHhCCHHH
Confidence            899999999774

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=93.65  E-value=0.057  Score=43.71  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=55.6

Q ss_pred             EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHH
Q psy11394         34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI  112 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~  112 (391)
                      |+|.|||++|...+..|....+-+-+           ..+++-+ |=+++.|+.+|+|+.| |++....+ ....+.+-|
T Consensus        33 v~l~v~~~~f~aHk~vLaa~S~yF~~-----------~~~~i~l~~v~~~~f~~ll~fiYt-g~~~i~~~-~v~~ll~aA   99 (119)
T 3m5b_A           33 TLITVGSQEFPAHSLVLAGVSQQLGR-----------RGQWALGEGISPSTFAQLLNFVYG-ESVELQPG-ELRPLQEAA   99 (119)
T ss_dssp             EEEEETTEEEEECHHHHHTTCGGGCC-----------CEEEECCSSCCHHHHHHHHHHHTT-CCEEECGG-GHHHHHHHH
T ss_pred             eEEEECCEEEeeEHHHHHHcCHHHhc-----------CCCEEEeCCCCHHHHHHHHHHHcC-CCcCcCHH-HHHHHHHHH
Confidence            77889999999999999665332211           2233333 4578999999999999 78877544 456688999


Q ss_pred             hcCCCcchh
Q psy11394        113 KFYELGDVA  121 (391)
Q Consensus       113 ~f~~l~~~~  121 (391)
                      ++|++....
T Consensus       100 ~~l~i~~l~  108 (119)
T 3m5b_A          100 RALGVQSLE  108 (119)
T ss_dssp             HHTTCHHHH
T ss_pred             HHhCCHHHH
Confidence            999997743

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=93.10  E-value=0.025  Score=47.39  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             EEEEeCCeeeeecHHHhccC-C--Ccccc-CccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         34 VVINVSGLRFETQLRTLNQF-P--ETLLG-DPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~-p--~t~l~-~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      |+|.|||++|...+..|... |  ..++. .+..    ......++-+ |=+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus        50 v~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e----~e~~~~~I~l~~v~~~~f~~lL~fiYt-g~~~i~~~-~v~~l  123 (144)
T 2ppi_A           50 AHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPK----DDGSTYKIELEGISVMVMREILDYIFS-GQIRLNED-TIQDV  123 (144)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHHCC---------CCCEEECCSSCHHHHHHHHHHHTT-SCCCCCTT-THHHH
T ss_pred             eEEEECCEEEehHHHHHHHcCHHHHHHHcCCCcc----ccCCCcEEEeCCCCHHHHHHHHHHHhC-CCCCCCHH-HHHHH
Confidence            78899999999999999643 2  23332 1111    0122345555 4589999999999999 78866543 56668


Q ss_pred             HHHHhcCCCcch
Q psy11394        109 SEEIKFYELGDV  120 (391)
Q Consensus       109 ~~E~~f~~l~~~  120 (391)
                      .+-|++|+++..
T Consensus       124 l~~A~~l~i~~L  135 (144)
T 2ppi_A          124 VQAADLLLLTDL  135 (144)
T ss_dssp             HHHHHHTTCHHH
T ss_pred             HHHHHHhCcHHH
Confidence            899999999764

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=93.09  E-value=0.034  Score=45.98  Aligned_cols=78  Identities=17%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|+|.|||++|...+..|...-   ..++....         .+++-+ |-+++.|+.+|+|+.+ |++.++.+ ....+
T Consensus        27 Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---------~~~i~l~~~~~~~f~~lL~fiYt-g~~~i~~~-~v~~l   95 (135)
T 2yy9_A           27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---------GGSVVLPAGFAEIFGLLLDFFYT-GHLALTSG-NRDQV   95 (135)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHTCC-------------CCEEECGGGHHHHHHHHHHHHH-SCCCCCTT-THHHH
T ss_pred             ceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---------CCeEEeCCCCHHHHHHHHHHHhC-CCCCCCHH-HHHHH
Confidence            3678899999999999996542   22332110         234444 4578999999999999 78877554 46678


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus        96 l~~A~~l~i~~L~  108 (135)
T 2yy9_A           96 LLAAKELRVPEAV  108 (135)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhCcHHHH
Confidence            9999999998754

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=92.34  E-value=0.039  Score=44.44  Aligned_cols=78  Identities=17%  Similarity=0.271  Sum_probs=56.2

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|++.|||++|...+..|...-   ..++....         .+++-+ |-+|+.|+.+|+|+.+ |++..+.+ ....+
T Consensus        26 Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---------~~~i~l~~~~~~~f~~ll~~iYt-g~~~~~~~-~v~~l   94 (119)
T 3b84_A           26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---------GGSVVLPAGFAEIFGLLLDFFYT-GHLALTSG-NRDQV   94 (119)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---------CCCEEECGGGHHHHHHHHHHHHH-SCCCCCTT-THHHH
T ss_pred             ceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---------CCeEEeCCCCHHHHHHHHHHHcC-CCCccCHH-HHHHH
Confidence            3678899999999999996542   23332211         234444 4568999999999999 78876654 46678


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus        95 l~~A~~~~i~~L~  107 (119)
T 3b84_A           95 LLAARELRVPEAV  107 (119)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhCcHHHH
Confidence            8999999997743

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=92.17  E-value=0.059  Score=43.70  Aligned_cols=80  Identities=15%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDV  107 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~  107 (391)
                      -|+|.|||++|...+..|...-   ..++....       .+..++-+  |=+++.|+.+|+|+.+ |++..+.+ ....
T Consensus        31 Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~-------~e~~~i~l~~~v~~~~f~~lL~~iYt-g~~~i~~~-~v~~  101 (124)
T 2ihc_A           31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA-------DGELNITLPEEVTVKGFEPLIQFAYT-AKLILSKE-NVDE  101 (124)
T ss_dssp             CEEEEETTEEEEECHHHHHHHBHHHHHHHTTC----------CEEEECCTTSCHHHHHHHHHHHHH-SEEEEETT-THHH
T ss_pred             CEEEEECCEEEecHHHHHHHcCHHHHHHHcCCC-------CCCceEeecCCcCHHHHHHHHHHhcC-CCcccCHH-HHHH
Confidence            3678999999999999995432   33333211       11234444  4578899999999999 79877654 4666


Q ss_pred             HHHHHhcCCCcchh
Q psy11394        108 FSEEIKFYELGDVA  121 (391)
Q Consensus       108 ~~~E~~f~~l~~~~  121 (391)
                      +.+-|++|+++...
T Consensus       102 ll~~A~~~~~~~L~  115 (124)
T 2ihc_A          102 VCKCVEFLSVHNIE  115 (124)
T ss_dssp             HHHHHHHHTBSSCC
T ss_pred             HHHHHHHHCCHHHH
Confidence            88999999998743

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=92.09  E-value=0.053  Score=42.64  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=56.4

Q ss_pred             eEEEEeCC----eeeeecHHHhccC-C--CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCC
Q psy11394         33 RVVINVSG----LRFETQLRTLNQF-P--ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVP  104 (391)
Q Consensus        33 ~v~lNVgG----~~f~t~~~tl~~~-p--~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~  104 (391)
                      =|++.|||    ++|...+..|... |  ..++.....     ... +++-+ |-+|+.|+.+|+|+.+ |++..+.+ .
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~-----e~~-~~i~l~~~~~~~f~~~l~~iYt-~~~~~~~~-~   81 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLA-----EVK-SEIHIPDVEPAAFLILLKYMYS-DEIDLEAD-T   81 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC-----------C-CEEEETTSCHHHHHHHHHHHHH-CCCCCCTT-T
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcc-----cCC-CeEEeCCCCHHHHHHHHHHHcC-CCccCCHH-H
Confidence            36788998    9999999999644 2  233322111     111 56666 5689999999999999 78877654 4


Q ss_pred             HHhHHHHHhcCCCcchh
Q psy11394        105 LDVFSEEIKFYELGDVA  121 (391)
Q Consensus       105 ~~~~~~E~~f~~l~~~~  121 (391)
                      ...+..-|++|+++...
T Consensus        82 ~~~ll~~A~~~~~~~L~   98 (109)
T 2vkp_A           82 VLATLYAAKKYIVPALA   98 (109)
T ss_dssp             HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCcHHHH
Confidence            45688999999997743

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=91.74  E-value=0.034  Score=44.87  Aligned_cols=77  Identities=17%  Similarity=0.301  Sum_probs=55.2

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeeecC-CCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFFDR-NRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~DR-~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|++.|||++|...+..|...-   ..++.+          ..+++-++- +++.|+.+|+|+.+ |++..+.+ ....+
T Consensus        29 Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~----------~~~~i~l~~~~~~~f~~ll~~~Yt-g~~~i~~~-~~~~l   96 (119)
T 2q81_A           29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----------QKDVVHLDISNAAGLGQVLEFMYT-AKLSLSPE-NVDDV   96 (119)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHHH----------CCSGGGGGGCCHHHHHHHHHHHHH-SCCCCCTT-THHHH
T ss_pred             ceEEEECCEEEehhHHHHHHcCHHHHHHHcC----------CCCEEEeCCCCHHHHHHHHHHHcC-CCCccCHH-HHHHH
Confidence            3678899999999999995432   223321          112333332 68899999999999 78877655 56668


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus        97 l~~A~~l~i~~L~  109 (119)
T 2q81_A           97 LAVATFLQMQDII  109 (119)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHH
Confidence            8999999997743

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=90.77  E-value=0.11  Score=47.66  Aligned_cols=84  Identities=17%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|+|.|||++|...+..|...-   ..++.....   .......++-+ |=+++.|+.+|+|+.+ |++.++.+ ....+
T Consensus        33 Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~---~~e~~~~~i~l~~v~~~~f~~ll~~~Yt-~~~~i~~~-~v~~l  107 (256)
T 3hve_A           33 DAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPP---KDDGSTYKIELEGISVMVMREILDYIFS-GQIRLNED-TIQDV  107 (256)
T ss_dssp             CEEEEETTEEEEECHHHHHTTCHHHHHTC--------------CEEECSSCCHHHHHHHHHHHHH-SCCCCC-C-CHHHH
T ss_pred             ceEEEECCEEEechHHHHHHcCHHHHHHhCCCCC---cccCCCCeEEeCCCCHHHHHHHHhhccC-CCCcccHh-HHHHH
Confidence            3678899999999999996653   233321100   00122345555 4589999999999999 78876543 56678


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus       108 l~~A~~l~i~~l~  120 (256)
T 3hve_A          108 VQAADLLLLTDLK  120 (256)
T ss_dssp             HHHHHHHTCHHHH
T ss_pred             HHHHHHHChHHHH
Confidence            9999999998743

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=90.60  E-value=0.072  Score=42.94  Aligned_cols=77  Identities=22%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|++.|||++|...+..|....   ..++.+          +.+++-+ |=+|+.|+.+|+|+.+ |++..+++ ....+
T Consensus        30 Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~----------~~~~i~l~~~~~~~f~~ll~~~Yt-g~~~~~~~-~~~~l   97 (121)
T 1buo_A           30 DVVIMVDSQEFHAHRTVLACTSKMFEILFHR----------NSQHYTLDFLSPKTFQQILEYAYT-ATLQAKAE-DLDDL   97 (121)
T ss_dssp             CEEEEESSCEEEECHHHHHHHCHHHHHHTTS----------CCSEEEECSSCHHHHHHHHHHHHH-SCCCCCGG-GHHHH
T ss_pred             CEEEEECCEEEehhHHHHhhcCHHHHHHHcC----------CCcEEEeCCCCHHHHHHHHHhhcC-CCcCCCHH-HHHHH
Confidence            3678899999999999995432   233321          1234444 4588999999999999 78876643 45668


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus        98 l~~A~~~~i~~L~  110 (121)
T 1buo_A           98 LYAAEILEIEYLE  110 (121)
T ss_dssp             HHHHHHHTCHHHH
T ss_pred             HHHHHHHCCHHHH
Confidence            8999999997643

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=90.55  E-value=0.11  Score=43.01  Aligned_cols=80  Identities=13%  Similarity=0.242  Sum_probs=57.2

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee--cCCCCChHHHHhhhhcCCeeecCCCCCHHh
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF--DRNRPSFDAILYYYQSGGRLRRPVNVPLDV  107 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~--DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~  107 (391)
                      -|+|.|||++|...+..|...-   ..++....       .+..++-+  |=+++.|+.+|+|+.+ |++..+.+ ....
T Consensus        38 Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~e~~~i~l~~~v~~~~~~~lL~~~Yt-g~~~i~~~-~v~~  108 (138)
T 2z8h_A           38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT-------DAELTVTLPEEVTVKGFEPLIQFAYT-AKLILSKD-NVDE  108 (138)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC-------CTTEEEECCTTSCHHHHHHHHHHHHH-SCCCCCTT-THHH
T ss_pred             CeEEEECCEEEechHHHHHHcCHHHHHHHhcCC-------CCCceEEeCCCCCHHHHHHHHHHhcC-CCcccCHH-HHHH
Confidence            3778999999999999995432   23332211       11234455  4578899999999999 78876654 4666


Q ss_pred             HHHHHhcCCCcchh
Q psy11394        108 FSEEIKFYELGDVA  121 (391)
Q Consensus       108 ~~~E~~f~~l~~~~  121 (391)
                      +.+-|++|+++...
T Consensus       109 ll~~A~~~~i~~L~  122 (138)
T 2z8h_A          109 VCRCVEFLSVHNIE  122 (138)
T ss_dssp             HHHHHHHHTCGGGH
T ss_pred             HHHHHHHhCCHHHH
Confidence            88999999998754

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=90.30  E-value=0.076  Score=42.63  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=52.9

Q ss_pred             EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCee-ecCCCCCHHhHHHH
Q psy11394         34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRL-RRPVNVPLDVFSEE  111 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l-~~p~~~~~~~~~~E  111 (391)
                      |++.|||++|...+..|...-. .+..+...      ..+++-+ |=+|+.|+.+|+|+.+ |++ ..+ .-....+.+-
T Consensus        34 v~l~v~~~~f~aHk~vLaa~S~-~F~~~f~~------~~~~i~l~~~~~~~f~~~l~~~Yt-g~~~~~~-~~~~~~ll~~  104 (116)
T 3fkc_A           34 VTVIVEDRKFRAHKNILSASST-YFHQLFSV------AGQVVELSFIRAEIFAEILNYIYS-SKIVRVR-SDLLDELIKS  104 (116)
T ss_dssp             EEEEETTEEEEECHHHHHHHCH-HHHHHTTS------CCSEEEECSSCHHHHHHHHHHHTT-SCCCSCC-HHHHHHHHHH
T ss_pred             EEEEECCEEEehhHHHHHHcCH-HHHHHHcC------CCCEEEeCCCCHHHHHHHHHhhcC-CCcCCCC-HHHHHHHHHH
Confidence            6778999999999999955421 11111111      1345555 4579999999999999 777 333 2345668889


Q ss_pred             HhcCCCcc
Q psy11394        112 IKFYELGD  119 (391)
Q Consensus       112 ~~f~~l~~  119 (391)
                      |++|+++.
T Consensus       105 A~~l~i~~  112 (116)
T 3fkc_A          105 GQLLGVKF  112 (116)
T ss_dssp             HHHHTCHH
T ss_pred             HHHhCccc
Confidence            99999865

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=90.17  E-value=0.073  Score=42.68  Aligned_cols=82  Identities=20%  Similarity=0.213  Sum_probs=56.2

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|++.|||++|...+..|...-   ..++.....     ....+++-+ |=+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus        27 Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~-----e~~~~~i~l~~~~~~~f~~ll~~~Yt-~~~~~~~~-~~~~l   99 (120)
T 2if5_A           27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAV-----VDQQNVYEIDFVSAEALTALMDFAYT-ATLTVSTA-NVGDI   99 (120)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHHC----------CCSEEECCSSCHHHHHHHHHHHHH-SCCCCCGG-GHHHH
T ss_pred             CeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcc-----ccCCceEEeCCCCHHHHHHHHHHHcC-CCCccCHH-HHHHH
Confidence            4678899999999999996442   233332111     112234444 3578999999999999 78776644 45668


Q ss_pred             HHHHhcCCCcchh
Q psy11394        109 SEEIKFYELGDVA  121 (391)
Q Consensus       109 ~~E~~f~~l~~~~  121 (391)
                      .+-|++|+++...
T Consensus       100 l~~A~~~~i~~L~  112 (120)
T 2if5_A          100 LSAARLLEIPAVS  112 (120)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHH
Confidence            8999999997743

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=89.86  E-value=0.071  Score=45.42  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=57.6

Q ss_pred             EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhHH
Q psy11394         34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFS  109 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~  109 (391)
                      |+|.|||++|...+..|...-   ..++....     .....+++-+ |-+|+.|+.+|+|+.+ |++..+++ ....+.
T Consensus        37 v~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~-----~e~~~~~i~l~~~~~~~f~~~l~~~Yt-~~~~~~~~-~~~~ll  109 (172)
T 3htm_A           37 CCLCVAGQEFQAHKAILAARSPVFSAMFEHEM-----EESKKNRVEINDVEPEVFKEMMCFIYT-GKAPNLDK-MADDLL  109 (172)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHSCC-----CGGGTTEEEECSSCHHHHHHHHHHHHH-SCCTTGGG-THHHHH
T ss_pred             eEEEECCEEEEeeHHHHHHcCHHHHHHHccCc-----cccCCCeEEecCCCHHHHHHHHHHHhC-CCCCCcHH-HHHHHH
Confidence            788999999999999996542   23333211     1112345555 6689999999999999 78765443 455688


Q ss_pred             HHHhcCCCcchh
Q psy11394        110 EEIKFYELGDVA  121 (391)
Q Consensus       110 ~E~~f~~l~~~~  121 (391)
                      +-|++|+++...
T Consensus       110 ~~A~~~~~~~l~  121 (172)
T 3htm_A          110 AAADKYALERLK  121 (172)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHhCcHHHH
Confidence            999999997743

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=87.37  E-value=0.06  Score=44.51  Aligned_cols=81  Identities=14%  Similarity=0.226  Sum_probs=56.3

Q ss_pred             eEEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVF  108 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~  108 (391)
                      -|+|.|||+.|...+..|...-   ..++.....     ....+++-+ |-+++.|+.+|+|+.+ |++..+.+ ....+
T Consensus        27 Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~-----e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~l   99 (145)
T 4eoz_A           27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME-----ESKKNRVEINDVEPEVFKEMMCFIYT-GKAPNLDK-MADDL   99 (145)
T ss_dssp             CEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSH-----HHHHTEEEECSSCHHHHHHHHHHHHH-SCCTTGGG-THHHH
T ss_pred             ceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCc-----CCCCceEEecCCCHHHHHHHHHhhcc-CccCCcHH-HHHHH
Confidence            3678899999999999995542   233322111     111235555 5689999999999999 78765443 45568


Q ss_pred             HHHHhcCCCcch
Q psy11394        109 SEEIKFYELGDV  120 (391)
Q Consensus       109 ~~E~~f~~l~~~  120 (391)
                      .+-|++|+++..
T Consensus       100 l~~A~~~~~~~l  111 (145)
T 4eoz_A          100 LAAADKYALERL  111 (145)
T ss_dssp             HHHHHHTTCHHH
T ss_pred             HHHHHHhCHHHH
Confidence            899999999764

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=84.98  E-value=0.57  Score=43.24  Aligned_cols=81  Identities=15%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             EEEEeC---CeeeeecHHHhccC-C--CccccCccCCccCCCCCCceeee-------cCCCCChHHHHhhhhcCCeeecC
Q psy11394         34 VVINVS---GLRFETQLRTLNQF-P--ETLLGDPARRIRYFDPLRNEYFF-------DRNRPSFDAILYYYQSGGRLRRP  100 (391)
Q Consensus        34 v~lNVg---G~~f~t~~~tl~~~-p--~t~l~~~~~~~~~~~~~~~e~f~-------DR~~~~F~~Il~y~r~~g~l~~p  100 (391)
                      |+|.||   |++|...+..|... |  ..++...     ......+++-+       |=+|+.|+.+|+|+.+ |++..+
T Consensus        35 v~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~-----~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt-g~~~i~  108 (279)
T 3i3n_A           35 ITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQ-----FSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT-GRIRVS  108 (279)
T ss_dssp             EEEECC----CEEEECHHHHHHHCTTSGGGCCC-------------EEECCCCSSTTCSCHHHHHHHHHHHHH-SEEEEE
T ss_pred             eEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCC-----CccccCCeEEeccccccCCCCHHHHHHHHHhhCc-CCcccC
Confidence            778998   99999999999644 2  3344321     11122345655       5688999999999999 898776


Q ss_pred             CCCCHHhHHHHHhcCCCcchh
Q psy11394        101 VNVPLDVFSEEIKFYELGDVA  121 (391)
Q Consensus       101 ~~~~~~~~~~E~~f~~l~~~~  121 (391)
                      .+ ....+.+-|++|+++...
T Consensus       109 ~~-~v~~ll~~A~~l~i~~L~  128 (279)
T 3i3n_A          109 TG-SVHEVLELADRFLLIRLK  128 (279)
T ss_dssp             TT-THHHHHHHHHHTTCHHHH
T ss_pred             HH-HHHHHHHHHHHHCcHHHH
Confidence            54 466688999999997743

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=84.22  E-value=0.047  Score=49.25  Aligned_cols=39  Identities=8%  Similarity=-0.002  Sum_probs=31.1

Q ss_pred             hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccce
Q psy11394        261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMR  299 (391)
Q Consensus       261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r  299 (391)
                      +.+.+....+.+++.|.++|+++||....+|+.|++|+-
T Consensus       148 a~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~  186 (229)
T 4dxw_A          148 ATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVM  186 (229)
T ss_dssp             HHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHH
T ss_pred             HHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHH
Confidence            333444556677788999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d1t1da_	100	d.42.1.2 (A:) Shaker potassium channel {California	1e-34
d3kvta_	103	d.42.1.2 (A:) akv3.1 voltage-gated potassium chann	2e-24
d1nn7a_	105	d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus	2e-22
d2h8pc1	57	f.14.1.1 (C:22-78) Potassium channel protein {Stre	2e-13
d2h8pc1	57	f.14.1.1 (C:22-78) Potassium channel protein {Stre	3e-13
d2h8pc1	57	f.14.1.1 (C:22-78) Potassium channel protein {Stre	2e-06
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	1e-09
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	1e-08
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	1e-07
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	5e-06
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	8e-07
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	4e-06
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	9e-06
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	1e-04
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	0.003

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score =  121 bits (305), Expect = 1e-34
 Identities = 86/100 (86%), Positives = 95/100 (95%)

Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
           ERVVINVSGLRFETQL+TLNQFP+TLLG+P +R RY+DPLRNEYFFDRNRPSFDAILY+Y
Sbjct: 1   ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60

Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGDVATNKFREDEGF 131
           QSGGRLRRPVNVPLDVFSEEIKFYELG+ A  ++REDEGF
Sbjct: 61  QSGGRLRRPVNVPLDVFSEEIKFYELGENAFERYREDEGF 100

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 94.2 bits (234), Expect = 2e-24
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 32  ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYY 91
            RV+INV G+R ET   TL + P T L      +  +DP+ NEYFFDR+   F  I+ YY
Sbjct: 2   NRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYY 61

Query: 92  QSGGRLRRPVNVPLDVFSEEIKFYELGD 119
           +S G+L  P +V   +F EE++F+ L  
Sbjct: 62  RS-GKLHYPTDVCGPLFEEELEFWGLDS 88

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 34  VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQS 93
           +V+NVSG RF+T   TL ++P+TLLG   R   ++ P   +YFFDR+   F  IL +Y++
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSSERD-FFYHPETQQYFFDRDPDIFRHILNFYRT 60

Query: 94  GGRLRRPVNVPLDVFSEEIKFYELGD 119
            G+L  P +  +  + EE+ F+ L  
Sbjct: 61  -GKLHYPRHECISAYDEELAFFGLIP 85

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGY 295
            + +   ++  S     AE G+  +   + P A WWA  T TTVGY
Sbjct: 12  TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 61.8 bits (150), Expect = 3e-13
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY 388
            ++  S     AE G+  +   + P A WWA  T TTVGY
Sbjct: 18  VLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 331 SIPDAFWWAVVTMTTVGY 348
           + P A WWA  T TTVGY
Sbjct: 40  TYPRALWWACETATTVGY 57

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVF 309
            + +   ++  S     AE G+  +   + P A WW+V T TTVGYGD+     + R V 
Sbjct: 12  TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVA 71

Query: 310 C 310
            
Sbjct: 72  V 72

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 335 AFWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
           A   A V +  V   ++  S     AE G+  +   + P A WW+V T TTVGYGD+
Sbjct: 7   AAGAATVLLVIV---LLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 223 MPSLYCLLTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDA 282
           MP+       L  +++ + +      +         LF+      +A            A
Sbjct: 8   MPASV--WRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGA 65

Query: 283 FWWAVVTMTTVGYGDMRCGAFFERGVFC 310
           F+++V T+ TVGYGDM     +   +  
Sbjct: 66  FFFSVETLATVGYGDMHPQTVYAHAIAT 93

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 334 DAFWWAVVTMTTVGY--GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              W          +     LF+      +A   N        AF+++V T+ TVGYGDM
Sbjct: 22  KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 81

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 45.4 bits (107), Expect = 8e-07
 Identities = 15/71 (21%), Positives = 27/71 (38%)

Query: 230 LTSLLLYSVVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVT 289
           L       + + +   +  I         LF+          + +   S  DAF+++V T
Sbjct: 12  LDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQT 71

Query: 290 MTTVGYGDMRC 300
           M T+GYG +  
Sbjct: 72  MATIGYGKLIP 82

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 334 DAFWWAVVTMTTVGYGVV--LFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
              W   +T+ T  Y V   LF+ A        EN+   S  DAF+++V TM T+GYG +
Sbjct: 21  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 80

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 250 LMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFER 306
           ++ +   V+++ +  +    G      +S   + +W  VT+ TVGYGD         
Sbjct: 5   ILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDYSPSTPLGM 55

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 349 GVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM 391
            V+++ +A +    G      +S   + +W  VT+ TVGYGD 
Sbjct: 11  AVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDY 47

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 326 FLVGKSIPDAFWWAVVTMTTVGYG 349
           F+ G+S   + +W  VT+ TVGYG
Sbjct: 22  FIEGESWTVSLYWTFVTIATVGYG 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	99.96
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	99.95
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	99.94
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	99.46
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.27
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.19
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	99.05
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	98.73
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	98.67
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	98.65
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	98.41
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	97.78
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	97.6
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	97.17
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	93.87
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	90.39

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.96  E-value=4e-31  Score=211.51  Aligned_cols=99  Identities=86%  Similarity=1.430  Sum_probs=93.3

Q ss_pred             ceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHH
Q psy11394         32 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE  111 (391)
Q Consensus        32 ~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E  111 (391)
                      |||+|||||++|+|+++||+++|+|+|+.+.++...+++++++|||||||++|++||||||+||.++.|++.|...|.+|
T Consensus         1 drI~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiDRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~E   80 (100)
T d1t1da_           1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE   80 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred             CeEEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHH
Confidence            68999999999999999999999999999888778889999999999999999999999999789999999999999999


Q ss_pred             HhcCCCcchhcchhhhccc
Q psy11394        112 IKFYELGDVATNKFREDEG  130 (391)
Q Consensus       112 ~~f~~l~~~~~e~~~~~e~  130 (391)
                      |+||||++..+|+++++++
T Consensus        81 a~y~gi~~~~~e~~~e~~~   99 (100)
T d1t1da_          81 IKFYELGENAFERYREDEG   99 (100)
T ss_dssp             HHHTTCCHHHHHHHHHHHC
T ss_pred             HHHcCCCHHHHHHHHHHcC
Confidence            9999999988888877764

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.95  E-value=1.2e-28  Score=198.30  Aligned_cols=94  Identities=39%  Similarity=0.669  Sum_probs=88.5

Q ss_pred             CceEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHH
Q psy11394         31 CERVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSE  110 (391)
Q Consensus        31 ~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~  110 (391)
                      +++|+|||||++|+|+++||+++|+|+|+.+.++...+++++++|||||||++|++||||||+ |+++.|++++...|.+
T Consensus         1 ~~rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~-g~l~~p~~~~~~~l~~   79 (103)
T d3kvta_           1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRS-GKLHYPTDVCGPLFEE   79 (103)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHH-SCBCCCSSSCHHHHHH
T ss_pred             CCEEEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHcc-CCcccccccCHHHHHH
Confidence            479999999999999999999999999999988888888999999999999999999999999 8999999999999999


Q ss_pred             HHhcCCCcchhcchh
Q psy11394        111 EIKFYELGDVATNKF  125 (391)
Q Consensus       111 E~~f~~l~~~~~e~~  125 (391)
                      ||+||||++..++.+
T Consensus        80 Ea~yygi~~~~l~~C   94 (103)
T d3kvta_          80 ELEFWGLDSNQVEPC   94 (103)
T ss_dssp             HHHHHTCCGGGBCGG
T ss_pred             HHHHcCCCHHHHHHH
Confidence            999999998777654

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=9.2e-28  Score=193.68  Aligned_cols=91  Identities=36%  Similarity=0.691  Sum_probs=83.4

Q ss_pred             eEEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeeecCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHH
Q psy11394         33 RVVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI  112 (391)
Q Consensus        33 ~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~  112 (391)
                      .|+|||||++|+|+++||+++|+|+|+++.. ...+++++++|||||||++|++||||||+ |++++|+++|.+.|.+||
T Consensus         1 iI~LNVGG~~f~t~~~TL~~~p~s~l~~~~~-~~~~~~~~~~~FiDRdp~~F~~IL~ylR~-G~l~~p~~~~~~~l~~Ea   78 (105)
T d1nn7a_           1 LIVLNVSGTRFQTWQDTLERYPDTLLGSSER-DFFYHPETQQYFFDRDPDIFRHILNFYRT-GKLHYPRHECISAYDEEL   78 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHTSCSSSTTSGGG-GGGEEGGGTEEEECSCTTTHHHHHHHHHH-SCBCCCTTSCHHHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhcCCCCCcccccc-ccCcCCCCCcEEEeCCHHHHHHHHHHHhc-CccccCCCccHHHHHHHH
Confidence            4899999999999999999999999998754 35678899999999999999999999999 899999999999999999


Q ss_pred             hcCCCcchhcchh
Q psy11394        113 KFYELGDVATNKF  125 (391)
Q Consensus       113 ~f~~l~~~~~e~~  125 (391)
                      +||||++..++.+
T Consensus        79 ~fygi~~~~l~~c   91 (105)
T d1nn7a_          79 AFFGLIPEIIGDC   91 (105)
T ss_dssp             HHHTCCSCCBCHH
T ss_pred             HHcCCCHHHHHHH
Confidence            9999998776643

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.46  E-value=4.7e-15  Score=104.00  Aligned_cols=53  Identities=30%  Similarity=0.413  Sum_probs=49.2

Q ss_pred             chhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhccccc
Q psy11394        336 FWWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY  388 (391)
Q Consensus       336 ~~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGY  388 (391)
                      .++++...+++++.+++++.++|++|++.++++|+++++|+||+++|||||||
T Consensus         5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            36778888888888999999999999999999999999999999999999999

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.27  E-value=4.8e-15  Score=123.49  Aligned_cols=118  Identities=12%  Similarity=0.018  Sum_probs=90.3

Q ss_pred             hhheeehhHHHhhhhhheeecCccccccccccccCCCcccccCCCCCCCChhHhhhhhhhhhHHHHHHHHHH-----HHH
Q psy11394        163 VVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETFLIMPSLYCLLTSLL-----LYS  237 (391)
Q Consensus       163 ~~~~~~~~~Illsii~~~leT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~v~~~~F~~E~llRl~-----f~~  237 (391)
                      .++..++++|++|++.+++||+++...                   +..+.+.++|.+|+++|++||++|++     +..
T Consensus         7 ~~e~~i~~lillnvi~~~let~~~~~~-------------------~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~~~~~   67 (132)
T d1orsc_           7 LVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGY   67 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccch-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccee
Confidence            499999999999999999999887554                   24467889999999999999999999     333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeeeehhHHHH
Q psy11394        238 VVMIYVHVLIPILMYIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFCRSRLRKF  317 (391)
Q Consensus       238 ~~~~iiDll~ilp~~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~RilkL~r~~~~  317 (391)
                      ..+|++|+++++|.++........                        ...++       +|.+|++  |++|+.|..++
T Consensus        68 ~~~~~iDl~ai~p~~~~~~~~~~~------------------------~~lr~-------lR~~R~~--R~lrl~~~~~~  114 (132)
T d1orsc_          68 VKKTLYEIPALVPAGLLALIEGHL------------------------AGLGL-------FRLVRLL--RFLRILLIISR  114 (132)
T ss_dssp             TTTCGGGTGGGSCHHHHHHHHHHH------------------------HHTTC-------HHHHHHH--HHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHhhhhhH------------------------HHHHH-------HHHHHHH--HHHHHHHHHHH
Confidence            346999999999999876542210                        01122       6777777  88888888888


Q ss_pred             HHHHhhhhcccccccCccchhh
Q psy11394        318 LLQEYSRCFLVGKSIPDAFWWA  339 (391)
Q Consensus       318 l~~~~~~~~~l~~~l~~s~~~l  339 (391)
                      + +      .+..++.++.+++
T Consensus       115 ~-~------~ll~ai~~s~~~l  129 (132)
T d1orsc_         115 G-S------KFLSAIADAADKL  129 (132)
T ss_dssp             H-H------HHHHHHHHHHHHH
T ss_pred             H-H------HHHHHHHHHHHhh
Confidence            8 6      6666766666554

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.19  E-value=1.6e-12  Score=103.24  Aligned_cols=55  Identities=33%  Similarity=0.474  Sum_probs=46.0

Q ss_pred             hhhhhhhhhhhhhhhcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        337 WWAVVTMTTVGYGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       337 ~~l~~~~~~l~i~i~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      +.+...++++++.++.++.++|..|++.++.++.+++||+||+++|+|||||||+
T Consensus         6 r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi   60 (103)
T d1r3jc_           6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL   60 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCcc
Confidence            3444555556666677788889999988889999999999999999999999996

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.05  E-value=5.8e-13  Score=93.17  Aligned_cols=44  Identities=34%  Similarity=0.545  Sum_probs=38.4

Q ss_pred             HHHHHHHhhhceEEEEeeCCCCCCcccccccceeeEEEEEEeec
Q psy11394        252 YIFAGVVLFSSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGY  295 (391)
Q Consensus       252 ~~~~~~~~~~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGy  295 (391)
                      ++.+.+.+++.++|++|++.++++|+|+|+++||+++|||||||
T Consensus        14 ~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          14 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            33444556778899999999999999999999999999999998

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.73  E-value=5.2e-11  Score=94.29  Aligned_cols=49  Identities=35%  Similarity=0.605  Sum_probs=42.7

Q ss_pred             hceEEEEeeCCCCCCcccccccceeeEEEEEEeecccceecccccceeee
Q psy11394        261 SSTVYFAEAGSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFERGVFC  310 (391)
Q Consensus       261 ~~~~y~~e~~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg~Rilk  310 (391)
                      +.+.|+.|++.+++.+.++++++||+++|+|||||||+.|.+..| |++-
T Consensus        23 s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~g-r~~~   71 (103)
T d1r3jc_          23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-RCVA   71 (103)
T ss_dssp             HHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-HHHH
T ss_pred             HHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhH-HHHH
Confidence            345577888899999999999999999999999999999999997 5443

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=98.67  E-value=3.3e-09  Score=85.44  Aligned_cols=41  Identities=37%  Similarity=0.551  Sum_probs=30.6

Q ss_pred             hcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       351 ~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++++.+.+..+.+.++....++.+|+||+++|+|||||||+
T Consensus        41 ~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi   81 (116)
T d1p7ba2          41 TLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM   81 (116)
T ss_dssp             HHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCC
T ss_pred             HHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhcccccc
Confidence            34444444444444556778999999999999999999996

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=98.65  E-value=2.9e-09  Score=85.76  Aligned_cols=41  Identities=39%  Similarity=0.559  Sum_probs=31.0

Q ss_pred             hcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       351 ~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++++.+.+..+....+.+..++.+|+||+++|||||||||+
T Consensus        40 ~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi   80 (116)
T d1xl4a2          40 ALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL   80 (116)
T ss_dssp             HHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCCCcc
Confidence            33444444444444566778999999999999999999996

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=98.41  E-value=2.2e-08  Score=75.03  Aligned_cols=34  Identities=35%  Similarity=0.691  Sum_probs=26.3

Q ss_pred             hcccceeeeeccCCCCCCCCCcchhhhhhhhhhcccccCCC
Q psy11394        351 VLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDM  391 (391)
Q Consensus       351 ~~~a~~~y~~E~~~~~~~f~s~~~alywaivT~tTVGYGDi  391 (391)
                      ++.+...+..|+       .++.||+||+++|+|||||||+
T Consensus        14 ~~g~~~~~~~e~-------~s~~dalyf~~~T~tTiGyGD~   47 (80)
T d1lnqa2          14 IYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDY   47 (80)
T ss_dssp             HHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHhC-------CCHHHHHHHHhhheeeccCCCC
Confidence            344445555553       3788999999999999999996

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=97.78  E-value=3.4e-07  Score=73.18  Aligned_cols=41  Identities=29%  Similarity=0.455  Sum_probs=33.1

Q ss_pred             EEEee-CCCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394        265 YFAEA-GSDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       265 y~~e~-~~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      |+.+. ...+....+..+++||+++|||||||||+.|.+..|
T Consensus        47 y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~   88 (116)
T d1p7ba2          47 YQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA   88 (116)
T ss_dssp             TSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH
T ss_pred             HHHhhcccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHH
Confidence            44443 335556778999999999999999999999999875

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=97.60  E-value=5.7e-07  Score=71.83  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             CCCCCcccccccceeeEEEEEEeecccceeccccc
Q psy11394        271 SDQSFFKSIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       271 ~~~~~f~si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      ..+....+..+++||+++|||||||||+.|.+..|
T Consensus        53 ~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~   87 (116)
T d1xl4a2          53 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLA   87 (116)
T ss_dssp             STTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHH
Confidence            34556678889999999999999999999999885

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.17  E-value=3.8e-06  Score=62.40  Aligned_cols=28  Identities=36%  Similarity=0.657  Sum_probs=26.3

Q ss_pred             cccccceeeEEEEEEeecccceeccccc
Q psy11394        278 SIPDAFWWAVVTMTTVGYGDMRCGAFFE  305 (391)
Q Consensus       278 si~~~~w~~iit~TTvGygd~r~~r~lg  305 (391)
                      |..+++||+++|+||+||||+.|.+..|
T Consensus        27 s~~dalyf~~~T~tTiGyGD~~P~t~~~   54 (80)
T d1lnqa2          27 SWTVSLYWTFVTIATVGYGDYSPSTPLG   54 (80)
T ss_dssp             CSSTTHHHHHHHHTTCCCSSCCCCCSSH
T ss_pred             CHHHHHHHHhhheeeccCCCCCCCCcch
Confidence            6789999999999999999999999885

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.012  Score=45.97  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             EEEEeCCeeeeecHHHhccCC---CccccCccCCccCCCCCCcee-eecCCCCChHHHHhhhhcCCeeecCCCCCHHhHH
Q psy11394         34 VVINVSGLRFETQLRTLNQFP---ETLLGDPARRIRYFDPLRNEY-FFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFS  109 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~e~-f~DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~  109 (391)
                      ++|.|+|++|...+..|....   ..++......     ...... .-|-+|+.|..+|+|+.+ |++..+.+ ....+.
T Consensus        28 v~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e-----~~~~~~~~~~v~~~~f~~ll~~~Yt-g~~~i~~~-~v~~ll  100 (122)
T d1r29a_          28 VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-----NLSVINLDPEINPEGFNILLDFMYT-SRLNLREG-NIMAVM  100 (122)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-----TCSEEECCTTSCHHHHHHHHHHHHH-SCCCCCTT-THHHHH
T ss_pred             EEEEECCEEEEEehHHhhhCCHHHHHHhccchhh-----hcceeeeecccCHHHHHHHHhhhcC-CeecCchh-hHHHHH
Confidence            567799999999999996553   3334221111     111111 125688999999999999 78877655 566688


Q ss_pred             HHHhcCCCcchh
Q psy11394        110 EEIKFYELGDVA  121 (391)
Q Consensus       110 ~E~~f~~l~~~~  121 (391)
                      +-|++|+++...
T Consensus       101 ~~A~~l~i~~L~  112 (122)
T d1r29a_         101 ATAMYLQMEHVV  112 (122)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHHCcHHHH
Confidence            999999997643

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.045  Score=42.59  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=55.0

Q ss_pred             EEEEeCCeeeeecHHHhccCCCccccCccCCccCCCCCCceeee-cCCCCChHHHHhhhhcCCeeecCCCCCHHhHHHHH
Q psy11394         34 VVINVSGLRFETQLRTLNQFPETLLGDPARRIRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEI  112 (391)
Q Consensus        34 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~e~f~-DR~~~~F~~Il~y~r~~g~l~~p~~~~~~~~~~E~  112 (391)
                      ++|.|||+.|...+..|...-+ .+..+..      .+.+++-+ |=+|+.|+.+|+|+.| |++.++.+ ....+..-|
T Consensus        31 v~l~v~~~~~~aHk~vLaa~S~-~F~~lf~------~~~~~i~~~~v~~~~f~~ll~~~Yt-g~i~l~~~-~v~~ll~~A  101 (121)
T d1buoa_          31 VVIMVDSQEFHAHRTVLACTSK-MFEILFH------RNSQHYTLDFLSPKTFQQILEYAYT-ATLQAKAE-DLDDLLYAA  101 (121)
T ss_dssp             EEEEESSCEEEECHHHHHHHCH-HHHHHTT------SCCSEEEECSSCHHHHHHHHHHHHH-SCCCCCGG-GHHHHHHHH
T ss_pred             EEEEECCEEEEEEHHHhcccCh-hhhhhcc------CccceeecCCCCHHHHHHHHHheEc-cccCCcHH-HHHHHHHHH
Confidence            6778999999999999955432 1221111      11234333 3478999999999999 78876655 566788999


Q ss_pred             hcCCCcch
Q psy11394        113 KFYELGDV  120 (391)
Q Consensus       113 ~f~~l~~~  120 (391)
                      ++|+++..
T Consensus       102 ~~l~~~~L  109 (121)
T d1buoa_         102 EILEIEYL  109 (121)
T ss_dssp             HHHTCHHH
T ss_pred             HHhCCHHH
Confidence            99999774