Psyllid ID: psy11400

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MSNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEEEEEcccccEEEEccccccccccccccccccccccHHHHHHHHccccccccEEEccccccEEEEcccccccccccccccccccccHHHHHccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEcccccEEccccccEEEcccEEEEcccccEEEEEEEEEccccEEEEEccccccccccHHHHHHHHHHcccccccEEEccccccccEEEccccccEEEEccccEcccccHHHHccccccHHHHHHccccHHHHHHHHHHccHHHHHHcccccccHHcHHHHccccHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHcc
Coil and Loop (DISEMBL)
MSNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTqngvdslsEGIFIYRNNLRGRLGITLglrsgglgfdsrwgrsfFDYMFGVRGALNllwplfggtvtkpprgklfyvpqrpymtlgtlrdqlwplfggtvtkpprgklfyvpqrpymtlgtlrdqviyphtkedmiqkgitdaDLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFyhrpqfaildectsavsvdvEGSMYEYCREVGITLFTVSHRKSLWTHHE
Flexible Loop (DISEMBL)
MSNVLQYYTMGRMLVKLAEAIGRLVLAGREMTrlagftarmTEIIRVLKDLNEGVYVRTMVtqngvdslseGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGgtvtkpprgklfyvpqrpymtlGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRkslwthhe
Low Complexity Region (SEG)
MSNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNlrgrlgitlglrsgglgFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE
Disordered region (IsUnstruct)
***VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW****
Disordered Region (DISOPRED)
*SNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGV*************************RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS*W**H*
Disordered Region (DISEMBL)
MSNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE
Disordered Region (DISPRO)
*SNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
P28288	659	ATP-binding cassette sub-	yes	N/A	0.902	0.408	0.581	7e-88
P16970	659	ATP-binding cassette sub-	yes	N/A	0.902	0.408	0.578	6e-87
P55096	659	ATP-binding cassette sub-	yes	N/A	0.859	0.388	0.538	1e-82
Q9UBJ2	740	ATP-binding cassette sub-	no	N/A	0.916	0.368	0.392	5e-56
Q61285	741	ATP-binding cassette sub-	no	N/A	0.916	0.368	0.399	8e-56
Q9QY44	741	ATP-binding cassette sub-	no	N/A	0.916	0.368	0.392	2e-55
Q8T8P3	741	ABC transporter D family	yes	N/A	0.949	0.381	0.387	1e-54
P33897	745	ATP-binding cassette sub-	no	N/A	0.936	0.374	0.386	2e-54
P48410	736	ATP-binding cassette sub-	no	N/A	0.919	0.372	0.380	2e-53
Q94FB9	1337	ABC transporter D family	yes	N/A	0.496	0.110	0.445	2e-35

>sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1

 Score =  323 bits (829), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 175/301 (58%), Positives = 210/301 (69%), Gaps = 32/301 (10%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQN-- 64
           YY  GRML+++++A+GR+VLAGREMTRLAGFTAR+TE+++VLKDLN G Y RTMV+Q   
Sbjct: 357 YYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEK 416

Query: 65  GVDSLS-------EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALN 117
           G++ +         G  I  +N+     + L   +G +           D  F VR   N
Sbjct: 417 GIEGVQVIPLIPGAGEIIIADNIIKFDHVPLATPNGDVLIR--------DLNFEVRSGAN 468

Query: 118 LLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPY 177
           +L     G      +  LF V       LG    +LWPLFGG +TKP RGKLFYVPQRPY
Sbjct: 469 VLICGPNGC----GKSSLFRV-------LG----ELWPLFGGRLTKPERGKLFYVPQRPY 513

Query: 178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
           MTLGTLRDQVIYP  +ED  +KGI+D  L EYL  VQLG+IL RE GWD+V DW+DVLSG
Sbjct: 514 MTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSG 573

Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH 297
           GEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG +Y +CR+VGITLFTVSHRKSLW HH
Sbjct: 574 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHH 633

Query: 298 E 298
           E
Sbjct: 634 E 634

Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity.
Homo sapiens (taxid: 9606)

>sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3

 Score =  320 bits (821), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 174/301 (57%), Positives = 207/301 (68%), Gaps = 32/301 (10%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQN-- 64
           YY  GRML+++++A+GR+VLAGREMTRLAGFTAR+TE+++VLKDLN G Y RTMV+Q   
Sbjct: 357 YYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQDK 416

Query: 65  GVDSLSE-------GIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALN 117
           G++           G  I  +N+     + L   +G +           D  F VR   N
Sbjct: 417 GIEGAQASPLIPGAGEIINADNIIKFDHVPLATPNGDILIQ--------DLSFEVRSGAN 468

Query: 118 LLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPY 177
           +L     G      +  LF V       LG    +LWPLFGG +TKP RGKLFYVPQRPY
Sbjct: 469 VLICGPNGC----GKSSLFRV-------LG----ELWPLFGGHLTKPERGKLFYVPQRPY 513

Query: 178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
           MTLGTLRDQVIYP  KED  +KGI+D  L  YL  VQLG+IL RE GWD+V DW+DVLSG
Sbjct: 514 MTLGTLRDQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSG 573

Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH 297
           GEKQR+AMARLFYH+PQFAILDECTSAVSVDVE  +Y +CR+VGITLFTVSHRKSLW HH
Sbjct: 574 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHH 633

Query: 298 E 298
           E
Sbjct: 634 E 634

Rattus norvegicus (taxid: 10116)

>sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=2

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/314 (53%), Positives = 202/314 (64%), Gaps = 58/314 (18%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQN-- 64
           YY  GRML+++++A+GR+VLAGREMTRLAGFTAR+TE+++VLKDLN G Y RTMV+Q   
Sbjct: 357 YYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGRYERTMVSQQEK 416

Query: 65  GVDSLS-------EGIFIYRNNLRGRLGITLGLRSG-----GLGFDSRWGRSFFDYMFGV 112
           G++           G  I  +N+     + L   +G      L F+ R G +    + G 
Sbjct: 417 GIEGAQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRSGANVL--ICGP 474

Query: 113 RGA--------LNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKP 164
            G         L  LWPLFGG +TKP RGKLFYVPQRPYMTLGTL               
Sbjct: 475 NGCGKSSLFRVLGELWPLFGGRLTKPERGKLFYVPQRPYMTLGTL--------------- 519

Query: 165 PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
                              RDQVIYP  KED  ++GI+D  L EYL  VQLG+IL RE G
Sbjct: 520 -------------------RDQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGG 560

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITL 284
           WD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVE  +Y +CR+VGITL
Sbjct: 561 WDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITL 620

Query: 285 FTVSHRKSLWTHHE 298
           FTVSHRKSLW HHE
Sbjct: 621 FTVSHRKSLWKHHE 634

Mus musculus (taxid: 10090)

>sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1

 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 174/301 (57%), Gaps = 28/301 (9%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV 66
           + T   +L   A+AI R++ + +E+T LAG+TAR+  +  V  ++  G+Y RT V Q   
Sbjct: 389 FTTARNLLASGADAIERIMSSYKEVTELAGYTARVYNMFWVFDEVKRGIYKRTAVIQESE 448

Query: 67  DSLSEGIFIYRN-----NLRGR-LGITLGLRSGGLGFDSRWGRSFFDYM-FGVRGALNLL 119
                G  +         ++G+ + +  G+    +   +  G      + F V   ++LL
Sbjct: 449 SHSKNGAKVELPLSDTLAIKGKVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLL 508

Query: 120 WPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRP 176
                  +T P    +  LF +              LWP++ G + KPP   +FY+PQRP
Sbjct: 509 -------ITGPNGCGKSSLFRI-----------LSGLWPVYEGVLYKPPPQHMFYIPQRP 550

Query: 177 YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS 236
           YM+LG+LRDQVIYP + +DM  KG TD DL   L  V L +I+ RE GWD V DW DVLS
Sbjct: 551 YMSLGSLRDQVIYPDSVDDMHDKGYTDQDLERILHNVHLYHIVQREGGWDAVMDWKDVLS 610

Query: 237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH 296
           GGEKQR+ MAR+FYH+P++A+LDECTSAVS+DVEG +++  +  GI+L +++HR SLW +
Sbjct: 611 GGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITHRPSLWKY 670

Query: 297 H 297
           H
Sbjct: 671 H 671

Probable transporter.

Homo sapiens (taxid: 9606)

>sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1

 Score =  217 bits (553), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 180/313 (57%), Gaps = 40/313 (12%)

Query: 1   MSNVLQYYTMGR-MLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRT 59
           +S+  + +T  R +L   A+AI R++ + +E+T LAG+TAR+  +  V  ++  G+Y RT
Sbjct: 384 VSDRTEAFTTARNLLASGADAIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRT 443

Query: 60  MVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFD-----------SRWGRSFFDY 108
            VTQ   +    G      NL   L  TL ++   +  D           +  G      
Sbjct: 444 -VTQEPENHSKRG-----GNLELPLSDTLAIKGTVIDVDHGIICENVPIITPAGEVVASR 497

Query: 109 M-FGVRGALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKP 164
           + F V   ++LL       +T P    +  LF +              LWP++ G + KP
Sbjct: 498 LNFKVEEGMHLL-------ITGPNGCGKSSLFRI-----------LSGLWPVYEGVLYKP 539

Query: 165 PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           P   +FY+PQRPYM+LG+LRDQVIYP + +DM +KG TD DL   L  V L +I+ RE G
Sbjct: 540 PPQHMFYIPQRPYMSLGSLRDQVIYPDSADDMREKGYTDQDLERILHSVHLYHIVQREGG 599

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITL 284
           WD V DW DVLSGGEKQR+ MAR+FYH+P++A+LDECTSAVS+DVEG +++     GI+L
Sbjct: 600 WDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISL 659

Query: 285 FTVSHRKSLWTHH 297
            +++HR SLW +H
Sbjct: 660 LSITHRPSLWKYH 672

Probable transporter.

Mus musculus (taxid: 10090)

>sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 180/313 (57%), Gaps = 40/313 (12%)

Query: 1   MSNVLQYYTMGR-MLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRT 59
           +S+  + +T  R +L   A+AI R++ + +E+T LAG+TAR+  +  V  ++  G+Y RT
Sbjct: 384 VSDRTEAFTTARNLLASGADAIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRT 443

Query: 60  MVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFD-----------SRWGRSFFDY 108
           +  +   +S S G       L   L  TL ++   +  D           +  G      
Sbjct: 444 VTQEPENNSKSGG------GLELPLSDTLAIKGTVIDVDHGILCENVPIITPAGEVVASS 497

Query: 109 M-FGVRGALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKP 164
           + F V   ++LL       +T P    +  LF +              LWP++ G + KP
Sbjct: 498 LNFKVEEGMHLL-------ITGPNGCGKSSLFRI-----------LSGLWPVYEGVLYKP 539

Query: 165 PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           P   +FY+PQRPYM+LG+LRDQVIYP + +DM +KG TD DL   L  V L +I+ RE G
Sbjct: 540 PPQHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHEKGYTDRDLEHILHSVHLYHIVQREGG 599

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITL 284
           WD V DW DVLSGGEKQR+ MAR+FYH+P++A+LDECTSAVS+DVEG +++     GI+L
Sbjct: 600 WDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISL 659

Query: 285 FTVSHRKSLWTHH 297
            +++HR SLW +H
Sbjct: 660 LSITHRPSLWKYH 672

Probable transporter.

Rattus norvegicus (taxid: 10116)

>sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/328 (38%), Positives = 181/328 (55%), Gaps = 45/328 (13%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNE-GVYVRTMVTQNG 65
           Y    +++V L++AIG+LVL G ++T +AG+T+R++E++ ++K + E G    T+V ++ 
Sbjct: 394 YIRNTQLMVALSQAIGQLVLLGNKVTLMAGYTSRVSELLEMIKSIKERGTSQFTIVHEDD 453

Query: 66  VDS------------LSEGIFIYRNNLRGRLGIT------LGLRSGGLGFDSRWGRSFFD 107
           V +             S  +  +  + R R   T         RS   G  + +G   F 
Sbjct: 454 VPNPLTNSPVNDKYDTSVDMSSWLEDWRKRSDQTRIVKRQQSNRSSASGATTVYGGGTF- 512

Query: 108 YMFGVRGALNLLWPLFGGTVTKPPRGKLFY-------VPQRPYMTLGT----------LR 150
               V G     +  F       P GKL         +P +  M  G           + 
Sbjct: 513 ----VEGD----FIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPNGSGKSSLFRIL 564

Query: 151 DQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210
            +LWPL  GTV KP +  + +VPQ+PY+ LGTLRDQ+IYPH+ +DM + G+TD DL   L
Sbjct: 565 GELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKKLGVTDDDLQHLL 624

Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
             V     + R+  WD   DW   LSGG+KQR+AMARLFYHRPQ+AILDECTSAVS +VE
Sbjct: 625 ATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILDECTSAVSDEVE 684

Query: 271 GSMYEYCREVGITLFTVSHRKSLWTHHE 298
           G +YE C+++GITLFTVSHR  L  +H+
Sbjct: 685 GKIYETCKKLGITLFTVSHRPQLRAYHD 712

Dictyostelium discoideum (taxid: 44689)

>sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 181/308 (58%), Gaps = 29/308 (9%)

Query: 1   MSNVLQYYTMGR-MLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRT 59
           +S   + +T+ R +L   A+AI R++ + +E+T LAG+TAR+ E+ +V +D+    + R 
Sbjct: 378 VSERTEAFTIARNLLTAAADAIERIMSSYKEVTELAGYTARVHEMFQVFEDVQRCHFKRP 437

Query: 60  MV---TQNGVDSLSEGIFIYRNNLRGR---LGITLGLRSGGLGFDSRWGRSFFDYM-FGV 112
                 Q G  ++          L+ R   + +  G+    +   +  G      +   V
Sbjct: 438 RELEDAQAGSGTIGRSGVRVEGPLKIRGQVVDVEQGIICENIPIVTPSGEVVVASLNIRV 497

Query: 113 RGALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKL 169
              ++LL       +T P    +  LF +       LG L    WP +GG + KPP  ++
Sbjct: 498 EEGMHLL-------ITGPNGCGKSSLFRI-------LGGL----WPTYGGVLYKPPPQRM 539

Query: 170 FYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA 229
           FY+PQRPYM++G+LRDQVIYP + EDM +KG ++ DL   L  V L +IL RE GW+ + 
Sbjct: 540 FYIPQRPYMSVGSLRDQVIYPDSVEDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMC 599

Query: 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
           DW DVLSGGEKQR+ MAR+FYHRP++A+LDECTSAVS+DVEG +++  ++ GI L +++H
Sbjct: 600 DWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITH 659

Query: 290 RKSLWTHH 297
           R SLW +H
Sbjct: 660 RPSLWKYH 667

Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity.

Homo sapiens (taxid: 9606)

>sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 182/313 (58%), Gaps = 39/313 (12%)

Query: 1   MSNVLQYYTMGR-MLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRT 59
           +S   + +T+ R +L   A+A  R++ + +E+T LAG+TAR+ E+ +V +D+    + RT
Sbjct: 378 VSERTEAFTIARNLLTAAADATERIMSSYKEVTELAGYTARVYEMFQVFEDVKHCRFKRT 437

Query: 60  -----------MVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDY 108
                      ++ Q+GV    EG    +  +   + +  G+    +   +  G      
Sbjct: 438 GDLEEAQAGPGVMVQSGVHV--EGPLKIQGQV---VDVEQGIICENIPIITPTGEVVVAS 492

Query: 109 M-FGVRGALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKP 164
           +   V   ++LL       +T P    +  LF +       LG L    WP + G + KP
Sbjct: 493 LNIRVEEGMHLL-------ITGPNGCGKSSLFRI-------LGGL----WPTYSGVLYKP 534

Query: 165 PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           P  ++FY+PQRPYM++G+LRDQVIYP + EDM +KG ++  L   L  V L +IL RE G
Sbjct: 535 PPQRMFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKGCSEQQLEAILGIVHLRHILQREGG 594

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITL 284
           W+ V DW DVLSGGEKQR+ MAR+FYHRP++A+LDECTSAVS+DVEG +++  ++ GI L
Sbjct: 595 WEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIAL 654

Query: 285 FTVSHRKSLWTHH 297
            +++HR SLW +H
Sbjct: 655 LSITHRPSLWKYH 667

Probable transporter. Could be involved in the import of VLCFA-CoA synthetase into the peroxisomal membrane.

Mus musculus (taxid: 10090)

>sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 104/173 (60%), Gaps = 25/173 (14%)

Query: 149  LRDQLWPLFGGTVTKPPR--------GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKG 200
            LRD +WP   G +TKP            +F+VPQRPY  LGTLRDQ+IYP +KE+  ++ 
Sbjct: 1143 LRD-IWPTVCGRLTKPSLDIKELGSGNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRA 1201

Query: 201  ---------------ITDADLTEYLQKVQLGYILNRE-KGWDTVADWIDVLSGGEKQRVA 244
                           I D+ L   L+ V+L Y+L R+  GWD   +W D+LS GE+QR+ 
Sbjct: 1202 AKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLG 1261

Query: 245  MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH 297
            MARLF+HRP+F +LDECT+A SVDVE  +Y   R++G+T  T S R +L   H
Sbjct: 1262 MARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFH 1314

Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
328719069	664	PREDICTED: ATP-binding cassette sub-fami	0.889	0.399	0.597	4e-93
242013169	663	peroxisomal membrane protein 70 abcd3, p	0.892	0.401	0.586	3e-92
157132870	659	peroxisomal membrane protein 70 abcd3 [A	0.895	0.405	0.603	4e-91
125981909	667	GA11765 [Drosophila pseudoobscura pseudo	0.892	0.398	0.584	1e-89
58380607	659	AGAP000440-PA [Anopheles gambiae str. PE	0.895	0.405	0.591	2e-89
170062340	605	peroxisomal membrane protein 70 abcd3 [C	0.895	0.441	0.593	3e-89
312375587	659	hypothetical protein AND_13976 [Anophele	0.895	0.405	0.593	3e-89
442617035	641	Pmp70, isoform C [Drosophila melanogaste	0.892	0.414	0.591	4e-89
24643394	665	Pmp70, isoform A [Drosophila melanogaste	0.892	0.4	0.591	4e-89
195345841	665	GM22994 [Drosophila sechellia] gi|194134	0.892	0.4	0.591	6e-89

>gi|328719069|ref|XP_001947679.2| PREDICTED: ATP-binding cassette sub-family D member 3-like [Acyrthosiphon pisum]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 181/303 (59%), Positives = 222/303 (73%), Gaps = 38/303 (12%)

Query: 6   QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG 65
            YYTMGRMLVKLAEAIGRLVLAGR+MTRLAGFTAR+TEI+ VL DLN+G YVRTM+T N 
Sbjct: 365 NYYTMGRMLVKLAEAIGRLVLAGRDMTRLAGFTARVTEIMTVLNDLNKGHYVRTMLTDN- 423

Query: 66  VDSLSE-------GIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNL 118
            ++L E       G  I ++N+     + L   +G +  +        +  F V   +N+
Sbjct: 424 -NTLKEKKLVPNSGRIITKDNIIKFDKVPLVTPNGDILVE--------ELSFEVTSGMNV 474

Query: 119 LWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQR 175
           L       V  P    +  LF +       LG    +LWPLFGGT+TKPP+GKLFY+PQ+
Sbjct: 475 L-------VCGPNGCGKSSLFRI-------LG----ELWPLFGGTLTKPPKGKLFYIPQK 516

Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
           PYMTLGTLRDQV YPHTKE+M ++  TD D+  +L++VQL Y+L R++GWDTVADW+DVL
Sbjct: 517 PYMTLGTLRDQVTYPHTKEEMQRRRKTDVDIANHLERVQLSYLLQRDQGWDTVADWMDVL 576

Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT 295
           SGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEGSMY+YCR+VGI+LFTVSHRKSLW 
Sbjct: 577 SGGEKQRIAMARLFYHQPQFAILDECTSAVSVDVEGSMYQYCRDVGISLFTVSHRKSLWK 636

Query: 296 HHE 298
           HH+
Sbjct: 637 HHD 639

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013169|ref|XP_002427287.1| peroxisomal membrane protein 70 abcd3, putative [Pediculus humanus corporis] gi|212511628|gb|EEB14549.1| peroxisomal membrane protein 70 abcd3, putative [Pediculus humanus corporis]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/307 (58%), Positives = 221/307 (71%), Gaps = 41/307 (13%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV 66
           YYT GRMLVKLAEAIGR+VLAGREMTRLAGFTAR+TE+I+VLKDLN G YVRTM+ Q  +
Sbjct: 358 YYTYGRMLVKLAEAIGRIVLAGREMTRLAGFTARVTELIKVLKDLNNGHYVRTMIDQKVL 417

Query: 67  D--SLSE----------GIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRG 114
           +  SL E          G  ++++N+     + L   +G +  +        +  F V+ 
Sbjct: 418 EKESLIEKSTMPLVPGTGKVVFQDNIIRFHKVPLVTPNGDVLIN--------ELTFEVKS 469

Query: 115 ALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFY 171
            +N+L       V  P    +  LF +       LG    +LWPLFGGTVTKPPRGKLFY
Sbjct: 470 GMNVL-------VCGPNGCGKSSLFRI-------LG----ELWPLFGGTVTKPPRGKLFY 511

Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
           +PQRPYMTLGTLRDQ+ YP T+E+M+++G +D DL+++L++VQLGY+L R  GWD + DW
Sbjct: 512 IPQRPYMTLGTLRDQITYPQTREEMLRRGKSDDDLSKHLERVQLGYLLQRPGGWDAIEDW 571

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK 291
           IDVLSGGEKQR+AMARLFYH PQFAILDECTSAVSVDVEGSMY+YCRE GITLFTVSHR+
Sbjct: 572 IDVLSGGEKQRIAMARLFYHNPQFAILDECTSAVSVDVEGSMYQYCREAGITLFTVSHRR 631

Query: 292 SLWTHHE 298
           SLW HH 
Sbjct: 632 SLWKHHN 638

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132870|ref|XP_001662679.1| peroxisomal membrane protein 70 abcd3 [Aedes aegypti] gi|108881642|gb|EAT45867.1| AAEL002913-PA [Aedes aegypti]

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 214/300 (71%), Gaps = 33/300 (11%)

Query: 6   QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG 65
           +YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+  VLKDLN G Y RTMV+ +G
Sbjct: 361 RYYTFGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELTVVLKDLNSGRYERTMVSNSG 420

Query: 66  VDSLS----EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWP 121
           V        +G+  +++N+     + L   +G +           D  F V+  +N+L  
Sbjct: 421 VADAKIGPGKGLMKFQDNIIRFEHVPLVTPNGDVLVK--------DLNFEVKSGMNVL-- 470

Query: 122 LFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYM 178
                V  P    +  LF +       LG    +LWP +GG VTKPP GKLFY+PQRPYM
Sbjct: 471 -----VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPPAGKLFYIPQRPYM 514

Query: 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGG 238
           TLGTLRDQ+IYPHT ++M ++G TDADL EYL+ VQL Y+  REKG D + DWIDVLSGG
Sbjct: 515 TLGTLRDQIIYPHTHQEMKRRGRTDADLQEYLELVQLSYLQVREKGLDAIEDWIDVLSGG 574

Query: 239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298
           EKQR+AMARLFYH PQFAILDECTSAVSVDVEGSMYEYCR+VGITLFTVSHRKSLW HH+
Sbjct: 575 EKQRIAMARLFYHSPQFAILDECTSAVSVDVEGSMYEYCRKVGITLFTVSHRKSLWKHHD 634

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125981909|ref|XP_001354958.1| GA11765 [Drosophila pseudoobscura pseudoobscura] gi|195163317|ref|XP_002022497.1| GL13065 [Drosophila persimilis] gi|54643270|gb|EAL32014.1| GA11765 [Drosophila pseudoobscura pseudoobscura] gi|194104489|gb|EDW26532.1| GL13065 [Drosophila persimilis]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 204/308 (66%), Gaps = 42/308 (13%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV 66
           YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+I+VL DLN+G Y RTMV  N +
Sbjct: 361 YYTYGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIKVLGDLNKGTYERTMVNGNNI 420

Query: 67  DSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRS-------------FFDYMFGVR 113
           +           N  G    + G   G + F+    R                +  F V+
Sbjct: 421 N--------LTQNASGSAANSFGPNKGIMCFEDNIIRFEQVPLVTPNGDVLLNELTFEVK 472

Query: 114 GALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLF 170
              N+L       V  P    +  LF +       LG    +LWP +GG VTKP RGKLF
Sbjct: 473 SGTNVL-------VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPSRGKLF 514

Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD 230
           Y+PQRPYMTLGTLRDQ+IYPHT+EDM + G +D DL  YL  VQL Y+  RE G D + D
Sbjct: 515 YIPQRPYMTLGTLRDQIIYPHTREDMRRVGQSDEDLMHYLDTVQLTYLEQRENGLDAIED 574

Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR 290
           WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG MY YCREVGITLFTVSHR
Sbjct: 575 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHR 634

Query: 291 KSLWTHHE 298
           KSLW HH+
Sbjct: 635 KSLWVHHD 642

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58380607|ref|XP_310656.2| AGAP000440-PA [Anopheles gambiae str. PEST] gi|55243365|gb|EAA06513.2| AGAP000440-PA [Anopheles gambiae str. PEST]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 211/301 (70%), Gaps = 34/301 (11%)

Query: 6   QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG 65
           +YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+  VLKDLN G Y RTMV  + 
Sbjct: 360 RYYTFGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELTVVLKDLNSGRYERTMVNNSA 419

Query: 66  VDSLSE-----GIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLW 120
           +    +     G+  +++NL     + L   +G +           D  F V+  +N+L 
Sbjct: 420 IADAGDIGPGRGLLKFQDNLIKFEHVPLVTPNGDVLVK--------DLTFEVKSGMNVL- 470

Query: 121 PLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPY 177
                 V  P    +  LF +       LG    +LWP +GG VTKPP GKLFY+PQRPY
Sbjct: 471 ------VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPPAGKLFYIPQRPY 513

Query: 178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
           MTLG+LRDQ+IYPHT ++M ++G TDADL +YL  VQL Y+  REKG D + DWIDVLSG
Sbjct: 514 MTLGSLRDQIIYPHTHQEMKRRGKTDADLLKYLDLVQLTYLQVREKGLDAIEDWIDVLSG 573

Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH 297
           GEKQR+AMARLFYH PQFAILDECTSAVSVDVEGSMY+YCR VGITLFTVSHRKSLWTHH
Sbjct: 574 GEKQRIAMARLFYHNPQFAILDECTSAVSVDVEGSMYQYCRAVGITLFTVSHRKSLWTHH 633

Query: 298 E 298
           +
Sbjct: 634 D 634

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062340|ref|XP_001866626.1| peroxisomal membrane protein 70 abcd3 [Culex quinquefasciatus] gi|167880268|gb|EDS43651.1| peroxisomal membrane protein 70 abcd3 [Culex quinquefasciatus]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 178/300 (59%), Positives = 211/300 (70%), Gaps = 33/300 (11%)

Query: 6   QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG 65
           +YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+  VLK+LN G Y RTMV+ + 
Sbjct: 307 KYYTFGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELTVVLKELNAGRYERTMVSNSS 366

Query: 66  VDSLS----EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWP 121
           V        +G+  +++NL     + L   +G +           D  F V+  +N+L  
Sbjct: 367 VADAEIGAGKGLLKFQDNLIKFEHVPLVTPNGDVLVK--------DLNFEVKSGMNVL-- 416

Query: 122 LFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYM 178
                V  P    +  LF +       LG    +LWP +GG VTKPP GKLFY+PQRPYM
Sbjct: 417 -----VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPPAGKLFYIPQRPYM 460

Query: 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGG 238
           TLGTLRDQ+IYPHT ++M ++G TDADL  YL  VQL Y+  REKG D + DWIDVLSGG
Sbjct: 461 TLGTLRDQIIYPHTHQEMKRRGKTDADLLSYLDLVQLTYLQVREKGLDAIEDWIDVLSGG 520

Query: 239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298
           EKQR+AMARLFYH+PQFAILDECTSAVSVDVEGSMYEYCR+V ITLFTVSHRKSLW HH+
Sbjct: 521 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGSMYEYCRKVAITLFTVSHRKSLWKHHD 580

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375587|gb|EFR22929.1| hypothetical protein AND_13976 [Anopheles darlingi]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 178/300 (59%), Positives = 210/300 (70%), Gaps = 33/300 (11%)

Query: 6   QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG 65
           +YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+  VLKDLN G Y RTMV+ +G
Sbjct: 361 RYYTFGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELTVVLKDLNSGRYERTMVSNSG 420

Query: 66  VDSLS----EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWP 121
           +         G+  +++N      + L   +G +           D  F V+   N+L  
Sbjct: 421 IADADIGPGRGLLKFQDNYIKFEKVPLVTPNGDVLVK--------DLTFEVQSGTNVL-- 470

Query: 122 LFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYM 178
                V  P    +  LF +       LG    +LWP +GG VTKPP GKLFY+PQRPYM
Sbjct: 471 -----VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPPAGKLFYIPQRPYM 514

Query: 179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGG 238
           TLG+LRDQ+IYPHT ++M ++G TDADL  YL+ VQL Y+  REKG D + DWIDVLSGG
Sbjct: 515 TLGSLRDQIIYPHTHQEMKRRGKTDADLLAYLELVQLSYLQVREKGLDAIEDWIDVLSGG 574

Query: 239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE 298
           EKQR+AMARLFYH PQFAILDECTSAVSVDVEGSMYEYCR+VGITLFTVSHRKSLW HH+
Sbjct: 575 EKQRIAMARLFYHNPQFAILDECTSAVSVDVEGSMYEYCRKVGITLFTVSHRKSLWKHHD 634

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442617035|ref|NP_001259733.1| Pmp70, isoform C [Drosophila melanogaster] gi|440216969|gb|AGB95572.1| Pmp70, isoform C [Drosophila melanogaster]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 181/306 (59%), Positives = 210/306 (68%), Gaps = 40/306 (13%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVT---- 62
           YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+I+VL DLN+G Y RTMV     
Sbjct: 337 YYTYGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNL 396

Query: 63  -QNGVDSLS------EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA 115
            QN V S S      +GI  + +N+     + L   +G +           +  F V+  
Sbjct: 397 AQNAVGSASSNFGPNKGIMCFEDNIIRFEKVPLVTPNGDVLLQ--------ELSFEVKSG 448

Query: 116 LNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYV 172
            N+L       V  P    +  LF +       LG    +LWP +GG VTKP RGKLFYV
Sbjct: 449 TNVL-------VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPSRGKLFYV 490

Query: 173 PQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWI 232
           PQRPYMTLGTLRDQ+IYPHT++DM + G +D DL  YL  VQL Y+  RE G D++ DWI
Sbjct: 491 PQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDSIEDWI 550

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292
           DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG MY YCREVGITLFTVSHRKS
Sbjct: 551 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKS 610

Query: 293 LWTHHE 298
           LW HH+
Sbjct: 611 LWAHHD 616

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24643394|ref|NP_608354.1| Pmp70, isoform A [Drosophila melanogaster] gi|442617033|ref|NP_001259732.1| Pmp70, isoform B [Drosophila melanogaster] gi|442617037|ref|NP_001259734.1| Pmp70, isoform D [Drosophila melanogaster] gi|21430168|gb|AAM50762.1| LD11581p [Drosophila melanogaster] gi|22832613|gb|AAF49018.2| Pmp70, isoform A [Drosophila melanogaster] gi|440216968|gb|AGB95571.1| Pmp70, isoform B [Drosophila melanogaster] gi|440216970|gb|AGB95573.1| Pmp70, isoform D [Drosophila melanogaster]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 181/306 (59%), Positives = 210/306 (68%), Gaps = 40/306 (13%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVT---- 62
           YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+I+VL DLN+G Y RTMV     
Sbjct: 361 YYTYGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNL 420

Query: 63  -QNGVDSLS------EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA 115
            QN V S S      +GI  + +N+     + L   +G +           +  F V+  
Sbjct: 421 AQNAVGSASSNFGPNKGIMCFEDNIIRFEKVPLVTPNGDVLLQ--------ELSFEVKSG 472

Query: 116 LNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYV 172
            N+L       V  P    +  LF +       LG    +LWP +GG VTKP RGKLFYV
Sbjct: 473 TNVL-------VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPSRGKLFYV 514

Query: 173 PQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWI 232
           PQRPYMTLGTLRDQ+IYPHT++DM + G +D DL  YL  VQL Y+  RE G D++ DWI
Sbjct: 515 PQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDSIEDWI 574

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292
           DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG MY YCREVGITLFTVSHRKS
Sbjct: 575 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKS 634

Query: 293 LWTHHE 298
           LW HH+
Sbjct: 635 LWAHHD 640

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195345841|ref|XP_002039477.1| GM22994 [Drosophila sechellia] gi|194134703|gb|EDW56219.1| GM22994 [Drosophila sechellia]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/306 (59%), Positives = 210/306 (68%), Gaps = 40/306 (13%)

Query: 7   YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVT---- 62
           YYT GRMLVKLAEAIGRLVLAGREM+RLAGFTARMTE+I+VL DLN+G Y RTMV     
Sbjct: 361 YYTYGRMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNL 420

Query: 63  -QNGVDSLS------EGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA 115
            QN V S S      +GI  + +N+     + L   +G +           +  F V+  
Sbjct: 421 AQNAVGSASSNFGPNKGIMCFEDNIIRFEKVPLVTPNGDVLLQ--------ELSFEVKSG 472

Query: 116 LNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYV 172
            N+L       V  P    +  LF +       LG    +LWP +GG VTKP RGKLFYV
Sbjct: 473 TNVL-------VCGPNGCGKSSLFRI-------LG----ELWPTWGGKVTKPSRGKLFYV 514

Query: 173 PQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWI 232
           PQRPYMTLGTLRDQ+IYPHT++DM + G +D DL  YL  VQL Y+  RE G D++ DWI
Sbjct: 515 PQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDSIEDWI 574

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292
           DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG MY YCREVGITLFTVSHRKS
Sbjct: 575 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKS 634

Query: 293 LWTHHE 298
           LW HH+
Sbjct: 635 LWAHHD 640

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
FB|FBgn0031069	665	Pmp70 [Drosophila melanogaster	0.493	0.221	0.775	8.2e-85
UNIPROTKB|F1P843	646	ABCD3 "Uncharacterized protein	0.493	0.227	0.795	1.5e-83
UNIPROTKB|J9P7K3	695	ABCD3 "Uncharacterized protein	0.493	0.211	0.795	1.5e-83
UNIPROTKB|E7EUE1	683	ABCD3 "ATP-binding cassette su	0.493	0.215	0.795	1.9e-83
UNIPROTKB|F5GYC1	586	ABCD3 "ATP-binding cassette su	0.493	0.250	0.795	1.9e-83
UNIPROTKB|P28288	659	ABCD3 "ATP-binding cassette su	0.493	0.223	0.795	1.9e-83
UNIPROTKB|A7Z038	656	ABCD3 "Uncharacterized protein	0.493	0.224	0.795	6.5e-83
UNIPROTKB|Q5F4B9	660	ABCD3 "Uncharacterized protein	0.493	0.222	0.795	1.1e-82
MGI|MGI:1349216	659	Abcd3 "ATP-binding cassette, s	0.493	0.223	0.789	1.7e-82
RGD|2007	659	Abcd3 "ATP-binding cassette, s	0.493	0.223	0.789	4.5e-82

FB|FBgn0031069 Pmp70 [Drosophila melanogaster (taxid:7227)]

 Score = 629 (226.5 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 114/147 (77%), Positives = 127/147 (86%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWP +GG VTKP RGKLFYVPQRPYMTLGTLRDQ+IYPHT++DM + G +D DL  YL 
Sbjct:   494 ELWPTWGGKVTKPSRGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLD 553

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQL Y+  RE G D++ DWIDVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   554 IVQLTYLEQRENGLDSIEDWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 613

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              MY YCREVGITLFTVSHRKSLW HH+
Sbjct:   614 KMYSYCREVGITLFTVSHRKSLWAHHD 640

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P843 ABCD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 638 (229.6 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
 Identities = 117/147 (79%), Positives = 130/147 (88%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  +ED  +KGI+D  L EYL 
Sbjct:   475 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLD 534

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   535 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEG 594

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   595 YIYSHCRKVGITLFTVSHRKSLWKHHE 621

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|J9P7K3 ABCD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 638 (229.6 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
 Identities = 117/147 (79%), Positives = 130/147 (88%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  +ED  +KGI+D  L EYL 
Sbjct:   524 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLD 583

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   584 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEG 643

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   644 YIYSHCRKVGITLFTVSHRKSLWKHHE 670

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E7EUE1 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)]

 Score = 638 (229.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 117/147 (79%), Positives = 130/147 (88%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  +ED  +KGI+D  L EYL 
Sbjct:   512 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLD 571

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   572 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEG 631

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   632 YIYSHCRKVGITLFTVSHRKSLWKHHE 658

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F5GYC1 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)]

 Score = 638 (229.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 117/147 (79%), Positives = 130/147 (88%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  +ED  +KGI+D  L EYL 
Sbjct:   415 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLD 474

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   475 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEG 534

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   535 YIYSHCRKVGITLFTVSHRKSLWKHHE 561

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P28288 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)]

 Score = 638 (229.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 117/147 (79%), Positives = 130/147 (88%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  +ED  +KGI+D  L EYL 
Sbjct:   488 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLD 547

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   548 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEG 607

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   608 YIYSHCRKVGITLFTVSHRKSLWKHHE 634

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IGI

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IGI

GO:0007031 "peroxisome organization" evidence=IMP;IDA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|A7Z038 ABCD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
 Identities = 117/147 (79%), Positives = 128/147 (87%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  KED  +KGI+D  L EYL 
Sbjct:   485 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQKKKGISDLVLKEYLD 544

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQL +IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVE 
Sbjct:   545 NVQLSHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVED 604

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CREVGITLFTVSHRKSLW HHE
Sbjct:   605 YIYSHCREVGITLFTVSHRKSLWKHHE 631

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5F4B9 ABCD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 634 (228.2 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
 Identities = 117/147 (79%), Positives = 129/147 (87%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP T ED  +KGI+D  L EYL 
Sbjct:   489 ELWPLFGGRLTKPVRGKLFYVPQRPYMTLGTLRDQVIYPDTLEDQRKKGISDQVLKEYLD 548

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG
Sbjct:   549 NVQLGQILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEG 608

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HH+
Sbjct:   609 YIYSHCRKVGITLFTVSHRKSLWKHHD 635

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

MGI|MGI:1349216 Abcd3 "ATP-binding cassette, sub-family D (ALD), member 3" [Mus musculus (taxid:10090)]

 Score = 631 (227.2 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 116/147 (78%), Positives = 129/147 (87%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  KED  ++GI+D  L EYL 
Sbjct:   488 ELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQKKRGISDQVLKEYLD 547

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVE 
Sbjct:   548 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVED 607

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   608 YIYSHCRKVGITLFTVSHRKSLWKHHE 634

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005782 "peroxisomal matrix" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043621 "protein self-association" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

RGD|2007 Abcd3 "ATP-binding cassette, subfamily D (ALD), member 3" [Rattus norvegicus (taxid:10116)]

 Score = 626 (225.4 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 116/147 (78%), Positives = 128/147 (87%)

Query:   152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
             +LWPLFGG +TKP RGKLFYVPQRPYMTLGTLRDQVIYP  KED  +KGI+D  L  YL 
Sbjct:   488 ELWPLFGGHLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQKKKGISDQVLKGYLD 547

Query:   212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
              VQLG+IL RE GWD+V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVE 
Sbjct:   548 NVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVED 607

Query:   272 SMYEYCREVGITLFTVSHRKSLWTHHE 298
              +Y +CR+VGITLFTVSHRKSLW HHE
Sbjct:   608 YIYSHCRKVGITLFTVSHRKSLWKHHE 634

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA;ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;NAS;IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005782 "peroxisomal matrix" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006635 "fatty acid beta-oxidation" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007031 "peroxisome organization" evidence=ISO

GO:0015910 "peroxisomal long-chain fatty acid import" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0042221 "response to chemical stimulus" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=TAS

GO:0042760 "very long-chain fatty acid catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043621 "protein self-association" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P28288	ABCD3_HUMAN	No assigned EC number	0.5813	0.9026	0.4081	yes	N/A
P55096	ABCD3_MOUSE	No assigned EC number	0.5382	0.8590	0.3884	yes	N/A
P16970	ABCD3_RAT	No assigned EC number	0.5780	0.9026	0.4081	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	298
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	1e-110
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	8e-51
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	9e-42
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-14
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-14
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	8e-14
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-13
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	3e-13
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-13
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	9e-13
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-12
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	5e-12
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-11
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-11
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-11
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	3e-11
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	5e-11
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	6e-11
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	7e-11
COG4987	573	COG4987, CydC, ABC-type transport system involved	9e-11
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-10
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-10
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-10
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	4e-10
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	4e-10
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	6e-10
pfam00005	119	pfam00005, ABC_tran, ABC transporter	7e-10
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	7e-10
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	8e-10
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	8e-10
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	1e-09
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-09
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-09
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	2e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-09
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	4e-09
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	7e-09
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-08
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-08
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	4e-08
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-08
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	6e-08
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	7e-08
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-08
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-07
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	3e-07
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	5e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-06
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-06
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-06
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-06
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-06
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-06
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-06
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-06
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-06
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-06
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-06
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-06
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-06
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-06
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	4e-06
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	5e-06
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	5e-06
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	7e-06
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	7e-06
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	7e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-05
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-05
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-05
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-05
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-05
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-05
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-05
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-05
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	1e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-05
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-05
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-05
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-05
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-05
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-05
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-05
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	3e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	4e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-05
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-05
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	5e-05
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	5e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	5e-05
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	5e-05
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	7e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	7e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	7e-05
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	7e-05
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	8e-05
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	9e-05
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	9e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-04
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-04
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	1e-04
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-04
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-04
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	1e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-04
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-04
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-04
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-04
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	2e-04
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	3e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-04
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-04
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	3e-04
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-04
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	3e-04
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	4e-04
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	4e-04
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	4e-04
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-04
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	4e-04
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	4e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	5e-04
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	5e-04
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	5e-04
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	5e-04
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	6e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	6e-04
COG4598	256	COG4598, HisP, ABC-type histidine transport system	6e-04
COG4133	209	COG4133, CcmA, ABC-type transport system involved	7e-04
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	7e-04
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	7e-04
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	7e-04
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	8e-04
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	8e-04
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	8e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	8e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	9e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.001
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	0.001
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	0.001
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.001
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	0.001
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	0.001
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	0.001
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	0.001
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.001
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	0.001
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	0.001
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	0.001
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	0.001
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	0.001
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	0.001
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.002
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	0.002
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	0.002
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	0.002
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	0.002
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	0.002
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	0.002
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	0.002
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	0.003
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.003
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	0.003
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	0.003
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	0.003
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	0.003
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	0.003
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	0.003
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	0.003
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	0.003
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.004
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	0.004
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	0.004
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	0.004
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	0.004

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score =  334 bits (857), Expect = e-110
 Identities = 157/313 (50%), Positives = 198/313 (63%), Gaps = 48/313 (15%)

Query: 3   NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMV- 61
            + ++Y  GR+L+K A+A+GRL+LAGR+MTRLAGFTAR+  +++VL D+  G + R  V 
Sbjct: 365 LMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVE 424

Query: 62  --------TQNGVDSLSEGIFIYRNNLRGRLGITLGLRSG-----GLGFDSRWGRSFFDY 108
                    +N       GI  Y++N      I L   +G      L F+   G      
Sbjct: 425 EIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGN----- 479

Query: 109 MFGVRGALNLLWPLFGGTVTKPP---RGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP 165
                   NLL       +  P    +  LF +       LG    +LWP++GG +TKP 
Sbjct: 480 --------NLL-------ICGPNGCGKSSLFRI-------LG----ELWPVYGGRLTKPA 513

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           +GKLFYVPQRPYMTLGTLRDQ+IYP + EDM ++G++D DL + L  VQL +IL RE GW
Sbjct: 514 KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW 573

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
             V DW+DVLSGGEKQR+AMARLFYH+PQFAILDECTSAVSVDVEG MY  CRE GITLF
Sbjct: 574 SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLF 633

Query: 286 TVSHRKSLWTHHE 298
           +VSHRKSLW +HE
Sbjct: 634 SVSHRKSLWKYHE 646

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score =  164 bits (418), Expect = 8e-51
 Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 40/146 (27%)

Query: 153 LWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
           LWP   G +  P    L ++PQRPY+ LGTLR+Q+IYP                      
Sbjct: 50  LWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---------------------- 87

Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
                             W DVLSGGE+QR+A ARL  H+P+F  LDE TSA+  + E  
Sbjct: 88  ------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129

Query: 273 MYEYCREVGITLFTVSHRKSLWTHHE 298
           +Y+  +E+GIT+ +V HR SLW  H+
Sbjct: 130 LYQLLKELGITVISVGHRPSLWKFHD 155

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score =  151 bits (384), Expect = 9e-42
 Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 153 LWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
           LWP   G ++ P    L ++PQRPY+  GTLR+ + YP+   D      +DA+L   L K
Sbjct: 442 LWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPD-----FSDAELVAVLHK 496

Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
           V LG +  R    D    W  VLSGGE+QR+A ARL  H+P++  LDE TSA+  + E  
Sbjct: 497 VGLGDLAER---LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553

Query: 273 MYEYCREV--GITLFTVSHRKSLWTHHE 298
           +Y+  +E     T+ +V HR +LW  H 
Sbjct: 554 LYQLLKEELPDATVISVGHRPTLWNFHS 581

Length = 604

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 18/132 (13%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++ +V Q PY+  GT+R+ ++       + +   +D ++   L +  L   + +  G 
Sbjct: 394 RKQISWVSQNPYLFAGTIRENIL-------LARPDASDEEIIAALDQAGLLEFVPKPDGL 446

Query: 226 DT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE------GSMYEYCR 278
           DT + +    LSGG+ QR+A+AR         +LDE T+   +D E       ++ E  +
Sbjct: 447 DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA--HLDAETEQIILQALQELAK 504

Query: 279 EVGITLFTVSHR 290
           +   T+  ++HR
Sbjct: 505 QK--TVLVITHR 514

Length = 559

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 13/133 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R ++ +VPQ P++  GT+ + +    P   +  I++ +  A L E++            +
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVA--------ALPQ 446

Query: 224 GWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
           G DT        LSGG+ QR+A+AR F       +LDE T+ +  + E  + E  R +  
Sbjct: 447 GLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ 506

Query: 281 GITLFTVSHRKSL 293
           G T+  V+HR +L
Sbjct: 507 GRTVLLVTHRLAL 519

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 71.1 bits (175), Expect = 8e-14
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 15/134 (11%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVI--YPHTKEDMIQKGITDADLTEYLQKVQLGY--ILNR 221
           R ++ YV Q P++  G++R+ +    P   ++ I +    A   E+++ + +GY   +  
Sbjct: 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG- 604

Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-- 279
           E G          LSGG++QR+A+AR    +P+  +LDE TSA+  + E  + +   +  
Sbjct: 605 EGG--------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656

Query: 280 VGITLFTVSHRKSL 293
            G T+  ++HR S 
Sbjct: 657 QGRTVIIIAHRLST 670

Length = 709

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 11/135 (8%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
           R ++  V Q P +  GT+R+ +        + +   TD ++ E L+      +I N   G
Sbjct: 402 RKRIGIVSQDPLLFSGTIRENI-------ALGRPDATDEEIEEALKLANAHEFIANLPDG 454

Query: 225 WDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
           +DT+     V LSGG++QR+A+AR     P   ILDE TSA+  + E  + +  +++  G
Sbjct: 455 YDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKG 514

Query: 282 ITLFTVSHRKSLWTH 296
            T   ++HR S   +
Sbjct: 515 RTTLIIAHRLSTIKN 529

Length = 567

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 115 ALNLLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQL 153
           AL  LWP   G +  P    L ++PQRPY+ LGTLR+QL
Sbjct: 46  ALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQL 84

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 13/99 (13%)

Query: 201 ITDADLTEYLQKV----QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256
           + D DL    + +    Q  ++ +      T+ +  ++LSGG++QR+A+AR     P   
Sbjct: 66  LRDLDLESLRKNIAYVPQDPFLFS-----GTIRE--NILSGGQRQRIAIARALLRDPPIL 118

Query: 257 ILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL 293
           ILDE TSA+  + E  + E  R +  G T+  ++HR S 
Sbjct: 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 66.1 bits (162), Expect = 9e-13
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R  +  V Q  ++  GT+ + +    P+  ++ + +   +A   ++        I+    
Sbjct: 76  RSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF--------IMKLPN 127

Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
           G+DT + +    LS GE+Q +A+AR     P+  ILDE TS +  + E  + E   ++  
Sbjct: 128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK 187

Query: 281 GITLFTVSHRKS 292
           G T   ++HR S
Sbjct: 188 GRTSIIIAHRLS 199

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 13/133 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILN-RE 222
           R  + YVPQ P +  GTLRD +    P+  ++ I +    A +TE++++   G  +   E
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597

Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
           +G          LSGG++Q VA+AR     P   +LDE TSA+    E    +  +    
Sbjct: 598 RG--------RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649

Query: 281 GITLFTVSHRKSL 293
           G TL  V+HR SL
Sbjct: 650 GKTLVLVTHRTSL 662

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVI--YPHTKEDMIQKGITDADLTEYLQKVQLGYILN-RE 222
           R  + YVPQ   +  GTLRD +    P   ++ I +    A +T+++ K   G  L   E
Sbjct: 77  RRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136

Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
           +G          LSGG++Q VA+AR   + P   +LDE TSA+ ++ E  + E  R++  
Sbjct: 137 RG--------RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188

Query: 281 GITLFTVSHRKSL 293
             TL  ++HR SL
Sbjct: 189 DKTLIIITHRPSL 201

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 22/137 (16%)

Query: 159 GTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQLG 216
           G + +  + ++ YVPQ+ Y+   TL      P T      ++ G    D+   L++VQ G
Sbjct: 59  GVIKRNGKLRIGYVPQKLYLD-TTL------PLTVNRFLRLRPGTKKEDILPALKRVQAG 111

Query: 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY 276
           ++++           +  LSGGE QRV +AR   +RPQ  +LDE T  V V+ + ++Y+ 
Sbjct: 112 HLIDAP---------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162

Query: 277 C----REVGITLFTVSH 289
                RE+   +  VSH
Sbjct: 163 IDQLRRELDCAVLMVSH 179

Length = 251

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
           V QR ++   TLRD ++       +     +D  L E LQ+V L  +L  +KG +    W
Sbjct: 419 VSQRVHLFSATLRDNLL-------LAAPNASDEALIEVLQQVGLEKLLEDDKGLNA---W 468

Query: 232 ID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLF 285
           +      LSGGE++R+ +AR   H     +LDE T  +  + E  + E   E     T+ 
Sbjct: 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVL 528

Query: 286 TVSHR 290
            ++HR
Sbjct: 529 MITHR 533

Length = 574

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
           LSGG++QRVA+AR     P   +LDE TS +       + E  RE+   G T+  V+H 
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 145 TLGTLRDQLWPLFGGTVT---KPP--------RGKLFYVPQRPYMTLGTLRDQVIY--PH 191
           T+  L +  +   GG V    KP           K+  V Q P +   +L+D + Y    
Sbjct: 55  TVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS 114

Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
              + +++    A    ++ ++  GY          V +    LSGG+KQRVA+AR    
Sbjct: 115 CSFECVKEAAQKAHAHSFISELASGY-------DTEVGEKGSQLSGGQKQRVAIARALIR 167

Query: 252 RPQFAILDECTSAVSVDVEGSMYE--YCREVGITLFTVSHRKSL 293
            PQ  ILDE TSA+  + E  + +  Y      T+  ++HR S 
Sbjct: 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)

Query: 156 LFGGTVTK-PPRGKLFYVPQRPYMTLG---TLRDQV---IYPHTKEDMIQKGITDADLTE 208
           +FG  V K   R ++ YVPQ+  +      T++D V    Y                + E
Sbjct: 63  IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122

Query: 209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
            L++V +  + +R+         I  LSGG+KQRV +AR     P   +LDE  + V V 
Sbjct: 123 ALERVGMEDLRDRQ---------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173

Query: 269 VEGSMYEY---CREVGITLFTVSH 289
            +  +Y+     R+ G T+  V+H
Sbjct: 174 GQKEIYDLLKELRQEGKTVLMVTH 197

Length = 254

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 27/139 (19%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKG---ITDADLTEYLQKVQL-GYILNR 221
           R  +  VPQ          D V++  T    I+ G    TD ++ E  +  Q+   I+  
Sbjct: 74  RRAIGVVPQ----------DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRF 123

Query: 222 EKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
             G+DT+     V      LSGGEKQRVA+AR     P   +LDE TSA+    E  +  
Sbjct: 124 PDGYDTI-----VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178

Query: 276 YCREV--GITLFTVSHRKS 292
             R+V  G T   ++HR S
Sbjct: 179 ALRDVSKGRTTIVIAHRLS 197

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 60.2 bits (147), Expect = 7e-11
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 38/138 (27%)

Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI--YPHTKE-------------DMIQK 199
               G+V+ P  G + YV Q P++  GT+R+ ++   P  +E             D+  +
Sbjct: 56  EKLSGSVSVP--GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDL--E 111

Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
            + D DLTE      +G     EKG       I+ LSGG+KQR+++AR  Y      +LD
Sbjct: 112 ILPDGDLTE------IG-----EKG-------IN-LSGGQKQRISLARAVYSDADIYLLD 152

Query: 260 ECTSAVSVDVEGSMYEYC 277
           +  SAV   V   ++E C
Sbjct: 153 DPLSAVDAHVGRHIFENC 170

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 162 TKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILN 220
            +  R  +  + QR ++  GTLRD +        +     +D +L   LQ+V L   + +
Sbjct: 407 EQALRETISVLTQRVHLFSGTLRDNLR-------LANPDASDEELWAALQQVGLEKLLES 459

Query: 221 REKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY 276
              G +T   W+      LSGGE++R+A+AR   H     +LDE T  +    E  +   
Sbjct: 460 APDGLNT---WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516

Query: 277 CREV--GITLFTVSHR 290
             E   G TL  V+HR
Sbjct: 517 LFEHAEGKTLLMVTHR 532

Length = 573

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R ++  V Q P +  GT+ + + Y  P   ++ +++    A++ ++        I++   
Sbjct: 76  RSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDF--------IMSLPD 127

Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
           G+DT V +    LSGG+KQR+A+AR     P+  +LDE TSA+  + E  + E       
Sbjct: 128 GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK 187

Query: 281 GITLFTVSHRKS 292
           G T   ++HR S
Sbjct: 188 GRTTIVIAHRLS 199

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 24/145 (16%)

Query: 156 LFGGTVTKPP---RGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL 210
           + G  V K P   R ++ YVPQ P  Y  L T+R+ + +   +   + K   +  + E L
Sbjct: 64  VLGYDVVKEPAKVRRRIGYVPQEPSLYPEL-TVRENLEF-FARLYGLSKEEAEERIEELL 121

Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
           +   L    N++         +  LSGG KQR+++A    H P+  ILDE TS   +D E
Sbjct: 122 ELFGLEDKANKK---------VRTLSGGMKQRLSIALALLHDPELLILDEPTSG--LDPE 170

Query: 271 GS------MYEYCREVGITLFTVSH 289
                   + E  +E G+T+   +H
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTH 195

Length = 293

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 30/171 (17%)

Query: 127 VTKPPRGKLFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTL---GTL 183
           +  P  G + +  Q   +T G LR               R ++  V Q PY +L    T+
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRL-------------RRRIQMVFQDPYSSLNPRMTV 386

Query: 184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQR 242
            D +  P             A + E L+ V L    L+R         +   LSGG++QR
Sbjct: 387 GDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR---------YPHELSGGQRQR 437

Query: 243 VAMARLFYHRPQFAILDECTSA--VSV--DVEGSMYEYCREVGITLFTVSH 289
           VA+AR     P+  ILDE  SA  VSV   V   + +   E+G+T   +SH
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488

Length = 539

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 201 ITDADLTEYLQKVQLGYILNREKGWD-TVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
           I+  D  E      +GY+   ++ +  ++A+ I  LSGG++QR+ +AR  Y  P+  +LD
Sbjct: 66  ISQWDPNELGD--HVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLD 121

Query: 260 ECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSL 293
           E  S + V+ E ++ +    +   G T   ++HR   
Sbjct: 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 31/157 (19%)

Query: 156 LFGGTVTKPPRGKLFY-----VPQRPY------MTLGTLRDQVIYPHTKEDMIQKGITDA 204
           L G  +    R K FY     V Q PY       T+G +  + + PH      Q+ I + 
Sbjct: 66  LDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG-LSKSQQRIAEL 124

Query: 205 DLTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
                L +V L    L+R             LSGG++QR+A+AR     P+  ILDE TS
Sbjct: 125 -----LDQVGLPPSFLDR---------RPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170

Query: 264 AVSVDVEGS----MYEYCREVGITLFTVSHRKSLWTH 296
           A+ V V+      + E  +E G+T   +SH  +L  H
Sbjct: 171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH 207

Length = 252

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTL--GTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
                      R K+  V Q P   L   T+ D+V +      + ++ I +  + E L+ 
Sbjct: 67  DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI-EERVAEALEL 125

Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
           V L  +L+R             LSGG+KQRVA+A +    P+  +LDE T+   +D +G 
Sbjct: 126 VGLEELLDR---------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA--GLDPKGR 174

Query: 273 ------MYEYCREVGITLFTVSHR 290
                 + +   E G T+  V+H 
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHD 198

Length = 235

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 15/99 (15%)

Query: 166 RGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           R ++  V Q P      T+R+ + +    ++       DA   E L++V L   L+RE  
Sbjct: 35  RKRIGVVFQDPQLFPELTVRENLFFGLRDKEA------DARAEEALERVGLPDFLDREP- 87

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
                  +  LSGG+KQRVA+AR    +P+  +LDE T+
Sbjct: 88  -------VGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 155 PLFGGTVT---KPP---RGKLFYVPQRPYMTLG---TLRDQV---IYPHTKEDMIQKGIT 202
               G++    KP    R ++ YVPQR  +      ++RD V   +Y H           
Sbjct: 50  KPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD 109

Query: 203 DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
            A + E L++V L  + +R+         I  LSGG++QRV +AR     P   +LDE  
Sbjct: 110 KAKVDEALERVGLSELADRQ---------IGELSGGQQQRVLLARALVQDPDLLLLDEPF 160

Query: 263 SAVSVDVEGSMYEYCREV---GITLFTVSH 289
           + V    +  +YE  RE+   G+T+  V+H
Sbjct: 161 AGVDPKTQEDIYELLRELRREGMTILVVTH 190

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 57.6 bits (139), Expect = 8e-10
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)

Query: 158 GGTVT--KPP--RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDAD-LTEYLQK 212
           G  V+  KP   R ++ Y  Q P +   T+ D +I+P      I+    D     + L +
Sbjct: 64  GEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPW----QIRNRRPDRAAALDLLAR 119

Query: 213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV---- 267
             L   IL +          I  LSGGEKQR+A+ R     P+  +LDE TSA+      
Sbjct: 120 FALPDSILTKN---------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170

Query: 268 DVEGSMYEYCREVGITLFTVSHRKSLWTHH 297
           ++E  ++ Y RE  + +  ++H K     H
Sbjct: 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRH 200

Length = 223

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 57.6 bits (140), Expect = 8e-10
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++  V Q  ++   T+ + + Y   +    ++ + +A       +    +I+   +G+
Sbjct: 75  RRQIGLVSQDVFLFNDTVAENIAY--GRPGATREEVEEAARAANAHE----FIMELPEGY 128

Query: 226 DTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGI 282
           DTV     V LSGG++QR+A+AR     P   ILDE TSA+  + E  +           
Sbjct: 129 DTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR 188

Query: 283 TLFTVSHRKS 292
           T F ++HR S
Sbjct: 189 TTFVIAHRLS 198

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 34/129 (26%), Positives = 67/129 (51%), Gaps = 12/129 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
           R ++  +PQ P +  GT+R   + P  +        +D +L + L++V L  ++ +   G
Sbjct: 77  RSRISIIPQDPVLFSGTIRSN-LDPFGEY-------SDEELWQALERVGLKEFVESLPGG 128

Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
            DT V +  + LS G++Q + +AR    + +  +LDE T++V  + +  + +  RE    
Sbjct: 129 LDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKD 188

Query: 282 ITLFTVSHR 290
            T+ T++HR
Sbjct: 189 CTVLTIAHR 197

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDT 227
           V Q P +  G++R+ + Y          G+TD    E +   +      +I+    G+DT
Sbjct: 560 VGQEPVLFSGSVRENIAY----------GLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT 609

Query: 228 VADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFT 286
                   LSGG+KQR+A+AR    +P+  ILDE TSA+  + E  + E       T+  
Sbjct: 610 EVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669

Query: 287 VSHRKSL 293
           ++HR S 
Sbjct: 670 IAHRLST 676

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 17/122 (13%)

Query: 174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID 233
           Q+P    G++ D V Y      +  K   D  + E L+K  L         WD V D + 
Sbjct: 88  QKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL---------WDEVKDRLH 138

Query: 234 V--LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTV 287
              LSGG++QR+ +AR   + P+  +LDE TSA+    +  +E  + E  +E  I +  V
Sbjct: 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI--V 196

Query: 288 SH 289
           +H
Sbjct: 197 TH 198

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY---PHTKEDMIQKGITDADLTEYLQKVQLGYILNRE 222
           R  + Y+PQ PY+  G++ + ++     +  +D I      A++ + ++ + LGY     
Sbjct: 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY----- 601

Query: 223 KGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
               T +++    +SGG+KQR+A+AR      +  ILDE TS +    E
Sbjct: 602 ---QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 202 TDADLTEYLQKVQ-LGYILNREKGWDTVA-DWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
           TD ++    ++ Q   +I  +  G+DTV  +    LSGGE+QR+A+AR     P   ILD
Sbjct: 437 TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496

Query: 260 ECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
           E TSA+ V+ E  +     E+  G T F ++HR S
Sbjct: 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531

Length = 588

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 218 ILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE- 275
           IL   +G+DT + +    LSGG++QR+A+AR  Y  P   +LDE  S +  + E ++   
Sbjct: 455 ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514

Query: 276 --YCREVGITLFTVSHRKSL 293
               +  G T+  ++HR S 
Sbjct: 515 ILAAKARGGTVVVIAHRPSA 534

Length = 580

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258
            G       E L+ + L   L ++K           LSGG++QRVA+AR   + P+  + 
Sbjct: 115 AGRRKRAAEELLEVLGLEDRLLKKK--------PSELSGGQQQRVAIARALINNPKIILA 166

Query: 259 DECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
           DE T  +    + +V   + E  +E G T+  V+H
Sbjct: 167 DEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201

Length = 226

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 31/137 (22%)

Query: 168 KLFYVPQRPYMTLG-TLRDQVI---YPH-------TKEDMIQKGITDADLTEYLQKVQLG 216
           KL YVPQ P    G T+ + V+   YPH       +KED          + E L+ + L 
Sbjct: 77  KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE-------EIVEEALELLGLE 129

Query: 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGS 272
           ++ +R          +D LSGGE+QRV +AR         +LDE TS +     ++V   
Sbjct: 130 HLADRP---------VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180

Query: 273 MYEYCREVGITLFTVSH 289
           + +  RE G+T+  V H
Sbjct: 181 LRDLNREKGLTVVMVLH 197

Length = 258

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDTVADWIDV-LSG 237
           L++ V++  +  D I        +   ++  +L     +I    +G+DT+       LSG
Sbjct: 82  LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG 141

Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
           G++QR+A+AR   H P+  I DE TSA+  + E ++     ++  G T+  ++HR S
Sbjct: 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 218 ILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMY 274
           IL    G+DT +      LSGG++QR+A+AR  Y  P+  +LDE  S  ++D EG  ++ 
Sbjct: 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS--NLDEEGEQALA 494

Query: 275 EYCREV---GITLFTVSHRKSL 293
              + +   GIT+  ++HR SL
Sbjct: 495 NAIKALKARGITVVVITHRPSL 516

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDT-VADWIDVLSG 237
            +D  ++  +  + I+ G   A   E  +  +      +IL R  G+DT V +  + LSG
Sbjct: 415 FQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474

Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY--CREVGITLFTVSHRKS 292
           GE+QR+A+AR         +LDE TSA+ V+ E  +           T F ++HR S
Sbjct: 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 32/156 (20%)

Query: 156 LFGGT--VTKPP---RGKLFYVPQRPYMTLGTLRDQVIYP------HTKEDMIQKGITDA 204
           LF G    T  P   R ++ Y  Q P +   T+ D +I+P           +    +   
Sbjct: 65  LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF 124

Query: 205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
            L +         IL +          I  LSGGEKQR+++ R     P+  +LDE TSA
Sbjct: 125 ALPDT--------ILTKN---------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167

Query: 265 VSVD----VEGSMYEYCREVGITLFTVSHRKSLWTH 296
           +       V   ++ Y RE  I +  V+H K    H
Sbjct: 168 LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203

Length = 225

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 52.1 bits (126), Expect = 6e-08
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
           LSGG++QRVA+AR   + P+  + DE T  +      +V   + E  +E G T+  V+H
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT----SAVSVDVEGSMYEYCREVGITLFTVSHR 290
           LSGGE+QRVA+AR F  RP     DE T     A    +   ++   RE G TL  V+H 
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206

Query: 291 KSL 293
             L
Sbjct: 207 PQL 209

Length = 228

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 19/129 (14%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY-PHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           R K+  V Q+P++  GT++D + Y P      + KG  + D+  YL  V L    N+E  
Sbjct: 76  RRKIGMVFQQPHLFEGTVKDNIEYGP------MLKGEKNVDVEYYLSIVGL----NKEYA 125

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREV 280
              V +    LSGGE QRV++AR   + P+  +LDE TSA+    +  +E  + +   ++
Sbjct: 126 TRDVKN----LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM 181

Query: 281 GITLFTVSH 289
            +T+  ++H
Sbjct: 182 NLTVIWITH 190

Length = 241

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 50.5 bits (122), Expect = 9e-08
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)

Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV---- 265
           L+ + L ++ +R           + LSGGE+QRV +AR     P   +LDE TS +    
Sbjct: 82  LELLGLAHLADRP---------FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132

Query: 266 SVDVEGSMYEYCREVGITLFTVSH 289
            +++   +    RE G T+  V H
Sbjct: 133 QIELLELLRRLARERGKTVVMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL 258
           K      + E L  VQL    NR+            LSGG++QRVA+AR   + P+  +L
Sbjct: 104 KAEIKERVAEALDLVQLEGYANRK---------PSQLSGGQQQRVAIARALVNEPKVLLL 154

Query: 259 DECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
           DE   A+ + +   M        +E+GIT   V+H
Sbjct: 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           LSGG++QRVA+AR     P   +LDE TSA+       +    + +    GIT+  V+H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
           LSGG+KQRVA+AR   HRP+  + DE T+A+      DV   M +  RE G T+  V+H
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG 224
           R  L +V Q P +  GTLRD V+       +     +D  L + L+   +   L    +G
Sbjct: 422 RKHLSWVGQNPQLPHGTLRDNVL-------LGNPDASDEQLQQALENAWVSEFLPLLPQG 474

Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
            DT + D    LS G+ QR+A+AR      Q  +LDE T
Sbjct: 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513

Length = 588

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 37/143 (25%)

Query: 166 RGKLF-YVPQRPYMT----LGTLRDQVI------YPHTKEDMIQKGITDADLTEYLQKVQ 214
           RGK    + Q P MT    + T+ DQ+          ++ +  ++ +      E L++V 
Sbjct: 89  RGKRIAMIFQDP-MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV------ELLEQVG 141

Query: 215 LGYILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
           L              +  D     LSGG +QRV +A     +P+  I DE T+A+ V  +
Sbjct: 142 LPD-----------PERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190

Query: 271 ----GSMYEYCREVGITLFTVSH 289
                 + +  RE+G+ +  ++H
Sbjct: 191 AQILDLLKDLQRELGMAVLFITH 213

Length = 539

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS 292
           LSGG++QR+ +AR     P   ILDE TSA+  + E  + +  R  G T   V+HR S
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLS 673

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 21/142 (14%)

Query: 156 LFGGTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ 211
           L  G     P   + YV Q     P++T+    D V          +         E L+
Sbjct: 61  LLDGRPVTGPGPDIGYVFQEDALLPWLTV---LDNVALGLELRGKSKAE-ARERAKELLE 116

Query: 212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG 271
            V L    ++         +   LSGG +QRVA+AR    RP+  +LDE   A+      
Sbjct: 117 LVGLAGFEDK---------YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167

Query: 272 SMYEY----CREVGITLFTVSH 289
            + +       E   T+  V+H
Sbjct: 168 ELQDELLRLWEETRKTVLLVTH 189

Length = 248

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
           LS GE+Q V +AR      +  ILDE T+A++      +++  R +   G+ +  +SHR
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 33/144 (22%)

Query: 160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPH-TKEDMIQKGI---------TDADLTEY 209
           T   P +  + YVPQ          +  ++PH T    I  G+          +  + E 
Sbjct: 64  TNLPPEKRDISYVPQ----------NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEI 113

Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
            + + + ++LNR+            LSGGE+QRVA+AR     P+  +LDE  SA+ V  
Sbjct: 114 AEMLGIDHLLNRKPE---------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164

Query: 270 EGS----MYEYCREVGITLFTVSH 289
           +      + +  +E G+T+  V+H
Sbjct: 165 KEKLREELKKIRKEFGVTVLHVTH 188

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 217 YILNREKGWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
           +I    +G++T        LSGG++QR+A+AR     P+  I DE TSA+  + E  +  
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634

Query: 276 YCREV--GITLFTVSHRKS 292
             RE+  G T+  ++HR S
Sbjct: 635 NMREICRGRTVIIIAHRLS 653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 171 YVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
            V Q     P+MT+    + V +       ++K    A + E L+ V L    +R     
Sbjct: 81  MVFQSYALFPHMTV---EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR----- 132

Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGI 282
                   LSGG++QRVA+AR     P+  +LDE  SA+   +   M     E  RE+GI
Sbjct: 133 ----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188

Query: 283 TLFTVSH 289
           T   V+H
Sbjct: 189 TFVYVTH 195

Length = 352

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
           D   +W   LSGG+KQRVA+AR   HRP   +LDE
Sbjct: 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159

Length = 257

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQ-KGITDADLTEYLQKVQLGYILNREKG 224
           R  +  V Q+P + + ++ + + Y      MI+ K   +A + + LQKV L      E+ 
Sbjct: 78  RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGL-----FEEV 132

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVG--I 282
            D +      LSGG++QR+ +AR    +P+  +LDE TSA+     G + E  +E+   +
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192

Query: 283 TLFTVSH 289
           ++  V+H
Sbjct: 193 SMIMVTH 199

Length = 246

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS--MYEYCREV---G 281
           TV + +  LSGG KQR+A+A+   H P+  ILDE TS   +D E     +E  RE+   G
Sbjct: 89  TVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSG--LDPESRREFWELLRELKKEG 145

Query: 282 ITLFTVSH 289
            T+   SH
Sbjct: 146 KTILLSSH 153

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFT 286
           +   LSGG++QRVA+AR     P   +LDE  SA+   +   + E      RE+GIT   
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186

Query: 287 VSH 289
           V+H
Sbjct: 187 VTH 189

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 20/133 (15%)

Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKG-ITDADLTEYLQKVQLG-YILNREKGWDT- 227
              Q  ++   T+R+ +         + +   TD +L   L++V L  ++     G DT 
Sbjct: 413 VCAQDAHLFDTTVRENL--------RLARPDATDEELWAALERVGLADWLRALPDGLDTV 464

Query: 228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTV 287
           + +    LSGGE+QR+A+AR         +LDE T  +  +    + E        L   
Sbjct: 465 LGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE-------DLLAA 517

Query: 288 SHRKS-LW-THHE 298
              ++ +  THH 
Sbjct: 518 LSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
           LSGGEKQRVA+AR     P   ILDE TSA+    E ++    REV  G T   ++HR S
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459

Length = 497

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 32/121 (26%)

Query: 182 TLRDQVIYP-----HTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV-- 234
           T+ + V +P       K ++ Q+      + E L+ V L             +D  D   
Sbjct: 99  TVFENVAFPLELAGVPKAEIKQR------VAELLELVGL-------------SDKADRYP 139

Query: 235 --LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVS 288
             LSGG+KQRVA+AR   + P+  + DE TSA+  +   S+ E      RE+G+T+  ++
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199

Query: 289 H 289
           H
Sbjct: 200 H 200

Length = 339

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 41/143 (28%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKED----MIQKGITDAD----LTEYLQKVQLGY 217
           R K+  V Q P        DQ   P  +E+    +   G+ + +    + E L+ V L  
Sbjct: 74  RRKVGLVFQNP-------DDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG 126

Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
           + +R             LSGG+KQRVA+A +    P   +LDE T+   +D  G      
Sbjct: 127 LRDRS---------PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA--GLDPAG-----R 170

Query: 278 REV----------GITLFTVSHR 290
           RE+          G T+  V+H 
Sbjct: 171 RELLELLKKLKAEGKTIIIVTHD 193

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 188 IYPH--TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAM 245
           ++PH   +E++I+       L++     +   +L R +       +   LSGG++QRVA+
Sbjct: 93  LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152

Query: 246 ARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
           AR     PQ  + DE T+A+  ++   +    +E+   GIT   V+H
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTH 199

Length = 242

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 20/119 (16%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKE-DMIQKGIT------DADLTEYLQKVQLGYI 218
           RG + YVPQ  ++   T+R+ +++    E +   + I       D DL       ++G  
Sbjct: 678 RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIG-- 735

Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
              E+G +        +SGG+KQRV+MAR  Y      I D+  SA+   V   +++ C
Sbjct: 736 ---ERGVN--------ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783

Length = 1495

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 32/143 (22%)

Query: 163 KPPRGKLFYVPQRPY------MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG 216
           K  R ++  V Q P       MT+G    + +  H K                L  V +G
Sbjct: 78  KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS----KKEARKEAVLLLLVGVG 133

Query: 217 ---YILNR---EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
               +LNR   E            LSGG++QRVA+AR     P+  I DE TSA+ V V+
Sbjct: 134 LPEEVLNRYPHE------------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181

Query: 271 GS----MYEYCREVGITLFTVSH 289
                 + +   E+G+TL  ++H
Sbjct: 182 AQILDLLKKLQEELGLTLLFITH 204

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVS 288
           D LSGG++QRVA+AR    +P+  + DE  +++    S  V   +    RE GIT+    
Sbjct: 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL 202

Query: 289 H 289
           H
Sbjct: 203 H 203

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITLFTVSH 289
           LSGG++QRVA+AR    RP+  + DE TSA+  ++ G     +     E  +T+  V+H
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           LSGG+KQRVA+AR     P+  + DE TSA+      S+ E  +E+    G+T+  ++H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREVGITLFTVSH 289
           LSGGEK R+A+A+L    P   +LDE T+   +D+E   ++ E  +E   T+  VSH
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTN--HLDLESIEALEEALKEYPGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 21/131 (16%)

Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
           G +F  P  P+  L ++ D + YP     + +K      + E L+KV L         W 
Sbjct: 93  GMVFQQPN-PFPHL-SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL---------WK 141

Query: 227 TVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCR 278
            V D ++     LSGG++QR+ +AR    +P+  ++DE TS + +     +E  + E   
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201

Query: 279 EVGITLFTVSH 289
           E+ I +  VSH
Sbjct: 202 EIAIVI--VSH 210

Length = 257

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 208 EYLQKVQLGYILNREKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA-- 264
           E L+KV L             AD +   LSGG++QRVA+AR     P+  + DE TSA  
Sbjct: 118 ELLEKVGL----------ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167

Query: 265 --VSVDVEGSMYEYCREVGITLFTVSH 289
             +  +V   M +   E G+T+  V+H
Sbjct: 168 PELVGEVLDVMKDLAEE-GMTMVVVTH 193

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 25/143 (17%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-------DLTEYLQKVQLGYI 218
           R  + Y  Q+P++   T+ + + +         K +TDA       DL  +  + ++G  
Sbjct: 78  RYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG-- 135

Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV-----EGSM 273
              E+G +        LSGG++QR+ +AR  Y       LD+  SA+ + +     +  +
Sbjct: 136 ---ERGIN--------LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184

Query: 274 YEYCREVGITLFTVSHRKSLWTH 296
            ++ ++   TL  V+H+     H
Sbjct: 185 LKFLQDDKRTLVLVTHKLQYLPH 207

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 29/146 (19%)

Query: 156 LFGGTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTE--- 208
           L  G     P     YV Q+    P++T+    D V        +  +G+  A+  E   
Sbjct: 62  LVDGEPVTGPGPDRGYVFQQDALLPWLTV---LDNVALG-----LELQGVPKAEARERAE 113

Query: 209 -YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
             L+ V L    N          +   LSGG +QRVA+AR     P   +LDE  SA+  
Sbjct: 114 ELLELVGLSGFENA---------YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

Query: 268 DVEGSMYEY----CREVGITLFTVSH 289
                + E      RE G T+  V+H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 235 LSGGEKQRVAMAR-LFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
           LSGG++QRVA+AR L   +P   +LDE  SA+   +   M     + C E  +TL  V+H
Sbjct: 130 LSGGQRQRVALARCLVREQP-ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188

Length = 231

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 192  TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
            T+ED +++    A + E+++ +   Y  N       V  +   LSGG+KQR+A+AR    
Sbjct: 1324 TRED-VKRACKFAAIDEFIESLPNKYDTN-------VGPYGKSLSGGQKQRIAIARALLR 1375

Query: 252  RPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFTVSHR 290
             P+  +LDE TS++  +    +E ++ +   +   T+ T++HR
Sbjct: 1376 EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418

Length = 1466

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
            E L  + L ++LNR         +   LSGGEKQRVA+AR    +P+  +LDE  SA+ 
Sbjct: 113 DELLDLLGLDHLLNR---------YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163

Query: 267 VDVEGSMYEYCREV----GITLFTVSH 289
             +   +    +++     I +  V+H
Sbjct: 164 RALRLQLLPELKQIKKNLNIPVIFVTH 190

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 28/128 (21%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           R  L  +PQ P +  GT+R  +  +            +D ++   L+             
Sbjct: 81  RSSLTIIPQDPTLFSGTIRSNLDPFDE---------YSDEEIYGALR------------- 118

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGI 282
              V++    LS G++Q + +AR    RP+  +LDE T+++    +  + +  RE     
Sbjct: 119 ---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS 175

Query: 283 TLFTVSHR 290
           T+ T++HR
Sbjct: 176 TILTIAHR 183

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 20/90 (22%)

Query: 208 EYLQKVQLG-YILNR---EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
           E L+KV L    L R   E            LSGG++QR+ +AR     P+  + DE  S
Sbjct: 91  ELLEKVGLPEEFLYRYPHE------------LSGGQRQRIGIARALALNPKLIVADEPVS 138

Query: 264 AVSVDVEGS----MYEYCREVGITLFTVSH 289
           A+ V V+      + +   E+G+T   +SH
Sbjct: 139 ALDVSVQAQILNLLKDLQEELGLTYLFISH 168

Length = 268

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
           LSGG+KQRVA+A +   +P   ILDE TS +      +V  ++ +   + GIT+ +++H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199

Length = 279

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 12/129 (9%)

Query: 166  RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK-G 224
            R  L  +PQ P +  GT+R   I P ++ +       DADL E L++  +  +++R   G
Sbjct: 1309 RRVLSIIPQSPVLFSGTVRFN-IDPFSEHN-------DADLWEALERAHIKDVIDRNPFG 1360

Query: 225  WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VG 281
             D  V++  +  S G++Q +++AR    R +  +LDE T++V V  +  +    RE    
Sbjct: 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420

Query: 282  ITLFTVSHR 290
             T+  ++HR
Sbjct: 1421 CTMLVIAHR 1429

Length = 1495

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFT 286
           ++D +SGG++QRVA+AR    +P+  + DE  S +  ++  SM E  RE+     IT   
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192

Query: 287 VSHRKS 292
           V+H +S
Sbjct: 193 VTHDQS 198

Length = 351

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
           LSGG++QRVA+AR   ++P+  +LDE  SA+   +   M        R++GIT   V+H
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203

Length = 375

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTV 287
              LSGG KQRVA+AR    RP+  +LDE   A+     G++ E       E  +T+  V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171

Query: 288 SH 289
           +H
Sbjct: 172 TH 173

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           SGG++QR+A+AR    +P+  +LDE TSA+   V+  + +  R++    G++   +SH
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485

Length = 534

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           LSGG+KQRVA+A +    P   ILDE TS +  D   ++ +  R+V     IT+ +++H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201

Length = 269

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 8/61 (13%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
           LSGG+KQRV +AR   + P+  + DE TSA  +D E +      + +  RE+G+T+  ++
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSA--LDPETTQSILALLRDINRELGLTIVLIT 198

Query: 289 H 289
           H
Sbjct: 199 H 199

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
           + VLSGGEK R+ +A+L    P   +LDE T+ + ++   ++ E   +   T+  VSH
Sbjct: 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSH 494

Length = 530

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 22/118 (18%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-----DLTEYL---QKVQLGY 217
           +G + YVPQ+ ++   +LR+ +++     +   + + +A     DL E L    + ++G 
Sbjct: 698 KGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL-EILPSGDRTEIG- 755

Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
               EKG +        LSGG+KQRV++AR  Y      + D+  SAV   V   ++E
Sbjct: 756 ----EKGVN--------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECT 262
             LSGGE+QRVA+AR   ++P   + DE T
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPT 165

Length = 223

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 31/141 (21%)

Query: 166 RGK-LFYVPQ------RPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL--- 215
           RGK +  + Q       P MT+G    +V+  H K   + K        E L+ V +   
Sbjct: 86  RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK--GLSKKEAKERAIELLELVGIPDP 143

Query: 216 GYILNR---EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
              L     E            LSGG +QRV +A      P+  I DE T+A+ V V+  
Sbjct: 144 ERRLKSYPHE------------LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQ 191

Query: 273 ----MYEYCREVGITLFTVSH 289
               + E  RE G  L  ++H
Sbjct: 192 ILDLLKELQREKGTALILITH 212

Length = 316

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 197 IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA 256
             K    A + E L+ VQL  + +R         + + LSGG++QRVA+AR     PQ  
Sbjct: 102 HPKAKIKARVEELLELVQLEGLGDR---------YPNQLSGGQRQRVALARALAVEPQVL 152

Query: 257 ILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
           +LDE   A+   V   +  + R    EV +T   V+H
Sbjct: 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA----VSVDVEGSMYEYCREVGITLFTVSH 289
           LSGG++QRVA+AR     P   +LDE  SA    V   +   + +  R +G+T   V+H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 12/72 (16%)

Query: 228 VADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYC 277
           + D+ID     LSGG+KQRVA+A +    P+  ILDE TS   +D  G       + +  
Sbjct: 133 MLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM--LDPAGKEQILKLIRKLK 190

Query: 278 REVGITLFTVSH 289
           ++  +T+ +++H
Sbjct: 191 KKNNLTVISITH 202

Length = 282

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA-----VSVDVEGSMYEYCREVGITLFTVSH 289
           LSGG++QRVA+AR     P+  + DE TSA     V  +V   M +   E G+T+  V+H
Sbjct: 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG-EVLDVMKDLAEE-GMTMIIVTH 194

Length = 240

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVS 288
             LSGGE+QRVA+AR+        +LDE  +A+   +   M     +   E  +T+  V+
Sbjct: 127 GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT 186

Query: 289 H 289
           H
Sbjct: 187 H 187

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSH 289
           LSGG++QRVA+AR         +LDE  SA+   +   M     + C+E  +TL  VSH
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188

Length = 232

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
           P+MT+    + V +   K   + +      + E L+ VQL    +R+            L
Sbjct: 55  PHMTV---EENVAFG-LKMRKVPRAEIKPRVLEALRLVQLEEFADRK---------PHQL 101

Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRK 291
           SGG++QRVA+AR    +P+  +LDE  SA+   +   M         ++GIT   V+H +
Sbjct: 102 SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161

Query: 292 S 292
            
Sbjct: 162 E 162

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           E L+KV L + +N              LSGGE+QRVA+AR   ++P   + DE T  +  
Sbjct: 124 EMLEKVGLEHRINHRPS---------ELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174

Query: 268 DVEGSMYEYCREV----GITLFTVSH 289
           +    +++   E+      +   V+H
Sbjct: 175 NNAKIIFDLMLELNRELNTSFLVVTH 200

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 8/61 (13%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREV----GITLFTVS 288
           LSGG+KQRVA+A     RP+  ILDE TS   +D EG   + +  + +     +T+ +++
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSM--LDPEGRLELIKTIKGIRDDYQMTVISIT 198

Query: 289 H 289
           H
Sbjct: 199 H 199

Length = 279

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
           + +  +KV +   L++E            LSGG+KQRVA+A +    P+  I DE TS
Sbjct: 123 IDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171

Length = 271

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
           P+MT+    +Q I    K+D + K    + + E L  V +     R+            L
Sbjct: 104 PHMTV----EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQL 150

Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSH 289
           SGG++QRVA+AR    RP+  +LDE   A+   +   M     +    VG+T   V+H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208

Length = 377

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 32/118 (27%)

Query: 158 GGTVTKPP---RGKLFYVPQRPYMTLGTLRDQVIYPH-TKEDMIQ-----KGITDADLTE 208
           G  V K P   R ++ Y+PQ             +YP+ T  + +      KGI   ++  
Sbjct: 60  GQDVLKQPQKLRRRIGYLPQEF----------GVYPNFTVREFLDYIAWLKGIPSKEVKA 109

Query: 209 Y----LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
                L+ V L          D     I  LSGG ++RV +A+     P   I+DE T
Sbjct: 110 RVDEVLELVNL---------GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
           LSGG++QRVA+AR     PQ  + DE T+A+  ++   +    RE+   GIT   V+H
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTH 199

Length = 242

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 15/73 (20%)

Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
           +K++  +K        E L+KV L   L ++         I  LSGGE+QRVA+AR    
Sbjct: 107 SKKEKREK------KKEALEKVGLNLKLKQK---------IYELSGGEQQRVALARAILK 151

Query: 252 RPQFAILDECTSA 264
            P   + DE T +
Sbjct: 152 PPPLILADEPTGS 164

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 175 RPYMTLGTLRDQV-IYPHTKEDMIQKGITDA---DLTEYLQKVQLGYIL-----NREKGW 225
           + Y+  G L  +  +YPH     +   +T+A   +L + L +++    L     + EK  
Sbjct: 364 KRYI--GILHQEYDLYPHRT---VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVG 281
           + +  + D LS GE+ RVA+A++    P+  ILDE T  +     VDV  S+ +   E+ 
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478

Query: 282 ITLFTVSH 289
            T   VSH
Sbjct: 479 QTFIIVSH 486

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 201 ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
              A +T+ L+ VQL ++ +R         +   LSGG+KQRVA+AR     PQ  +LDE
Sbjct: 112 AIKAKVTQLLEMVQLAHLADR---------YPAQLSGGQKQRVALARALAVEPQILLLDE 162

Query: 261 CTSAVSVDVEGSMYEYCRE 279
              A+   V   +  + R+
Sbjct: 163 PFGALDAQVRKELRRWLRQ 181

Length = 353

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS-------VDVEGSMYEYCREVGITLFTV 287
           LSGGE+QRVA+AR F  RP     DE T  +         D+   ++   RE G TL  V
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL---LFSLNREHGTTLILV 203

Query: 288 SHRKSL 293
           +H   L
Sbjct: 204 THDLQL 209

Length = 228

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++  V Q+P     ++ D V Y    +     G  D  + E L++  L         W
Sbjct: 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQG--YDGDIDERVEESLRRAAL---------W 167

Query: 226 DTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
           D V D +D     LSGG++QR+ +AR     P+  ++DE  SA+
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211

Length = 285

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFT 286
             LSGG++QRVA+AR    +P+  + DE  +  S+D E +      + +  +E GIT+  
Sbjct: 146 STLSGGQQQRVAIARALVQQPKIILADEPVA--SLDPESAKKVMDILKDINQEDGITVIV 203

Query: 287 VSH 289
             H
Sbjct: 204 NLH 206

Length = 258

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 23/139 (16%)

Query: 159 GTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ 214
           G    P + ++ YV Q     P++++   R  + Y   +    ++ I+   + E L    
Sbjct: 67  GIFLPPEKRRIGYVFQEARLFPHLSV---RGNLRYGMKRARPSERRISFERVIELLG--- 120

Query: 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY 274
           +G++L R  G          LSGGEKQRVA+ R     P+  ++DE  +A+    +  + 
Sbjct: 121 IGHLLGRLPG---------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171

Query: 275 EYCR----EVGITLFTVSH 289
            Y      E GI +  VSH
Sbjct: 172 PYLERLHAEFGIPILYVSH 190

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREVGITL 284
            D+   LSGGE+QRV +A     RP+  I DE T+A+ V V+      + E  +E+ + L
Sbjct: 151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL 210

Query: 285 FTVSH 289
             ++H
Sbjct: 211 LFITH 215

Length = 529

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRK 291
           LSGG++QRVA+AR    RP+  + DE TSA+  ++ G +    R   +   T+  V+H  
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204

Query: 292 S 292
           S
Sbjct: 205 S 205

Length = 250

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECT 262
           + LSGGE+QRVA+AR   + P   + DE T
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPT 165

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 163 KPPRGKLFYVPQRPYMTLG---TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219
           +  R  + ++ Q PY +L    T+ D ++ P     ++      A +   L++V L    
Sbjct: 397 QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL---- 452

Query: 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYE 275
             E  W     +    SGG++QR+ +AR     P+  I DE  SA+ V + G     + +
Sbjct: 453 LPEHAWR----YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508

Query: 276 YCREVGITLFTVSH 289
             R+ GI    +SH
Sbjct: 509 LQRDFGIAYLFISH 522

Length = 623

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS---AVSVD 268
           WD     +  LSGGE++RVA+ RL   +P   +LDE T+   A SV 
Sbjct: 157 WDAK---VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200

Length = 556

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
           LSGG+KQRVA+A +   RP+  I DE T+ +      +V  ++ E  ++ GIT+  ++H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203

Length = 280

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGIT 283
           D LSGG++QRVA+AR    +P   + DE  +++    S  V   +    +E GIT
Sbjct: 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGIT 198

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 18/131 (13%)

Query: 152 QLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKE-DMIQKGITDADLTEYL 210
           +L P    +V    RG + YVPQ  ++   T+RD +++    + +  ++ I   D+T   
Sbjct: 666 ELPPRSDASVVI--RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAI---DVTALQ 720

Query: 211 QKVQL--GYILNR--EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
             + L  G  L    E+G +        +SGG+KQRV+MAR  Y      I D+  SA+ 
Sbjct: 721 HDLDLLPGGDLTEIGERGVN--------ISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772

Query: 267 VDVEGSMYEYC 277
             V   +++ C
Sbjct: 773 AHVGRQVFDKC 783

Length = 1622

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQF 255
           G+ D +L +  Q+V+    L +   W    D +D      SGG++QR+ +AR    RP+ 
Sbjct: 113 GVKDKELID--QRVEES--LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKV 168

Query: 256 AILDECTSAV----SVDVEGSMYEYCREVGITLFTVSH 289
            +LDE TSA+    S ++E ++ E   +   T   V+H
Sbjct: 169 VLLDEPTSALDPISSSEIEETLMELKHQ--YTFIMVTH 204

Length = 251

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDM--IQKGITDADLTEYLQKVQLGYILNREKGWDTV 228
           YVPQ+ ++   T+R  +++   +ED   +   +  + L   L   QLG  L  E G   V
Sbjct: 725 YVPQQAWIMNATVRGNILF-FDEEDAARLADAVRVSQLEADLA--QLGGGLETEIGEKGV 781

Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
                 LSGG+K RV++AR  Y      +LD+  SA+   V
Sbjct: 782 N-----LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817

Length = 1560

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSH 289
           LSGG++QRVA+AR    +P+  + DE TSA+  ++   + +  +   E G+T+  V+H
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194

Length = 240

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSHR 290
           LSGG++QRVA+AR         +LDE  SA+   +   M     + C E   TL  V+H 
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188

Query: 291 KS 292
            S
Sbjct: 189 LS 190

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
           WD V+D +D     LSGG++QR+ +AR     P+  +LDE TSA+
Sbjct: 169 WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSAL 213

Length = 286

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++  V Q+P     ++ D V Y      +  K   D  +   L+K  L         W
Sbjct: 84  RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAAL---------W 134

Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYC 277
           D V D +      LSGG++QR+ +AR    +P   ++DE TSA+    ++ +E  M E  
Sbjct: 135 DEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194

Query: 278 REVGITLFT 286
           +E  I + T
Sbjct: 195 KEYTIVIVT 203

Length = 251

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 203 DADLT-EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
           DA +    L + +L ++ +R+    T       LSGGE+QRV +AR     P+  +LDE 
Sbjct: 114 DAAVVDRALARTELSHLADRD--MST-------LSGGERQRVHVARALAQEPKLLLLDEP 164

Query: 262 TSAVSVDVEGSMYEYCREVGITLFTV 287
           T+ + V  +       RE+  T  TV
Sbjct: 165 TNHLDVRAQLETLALVRELAATGVTV 190

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
           I +LSGG +Q+VA+AR    RP+  ILDE T  V V  +  +Y+
Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436

Length = 501

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
           LSGG+KQRVA+AR     P+  + DE TSA
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSA 170

Length = 343

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCREVGITLFTV 287
           +D LSGGE+QR  +A L     +  +LDE TSA+     VDV   ++   +E G+T+  V
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204

Query: 288 SH 289
            H
Sbjct: 205 LH 206

Length = 265

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 19/98 (19%)

Query: 188 IYPHTK-EDMIQKGI-----TDADL----TEYLQKVQLGYILNREKGWDTVADWIDVLSG 237
           ++PH K ED +  G+       AD+     + L+ V LG         D  A     LSG
Sbjct: 90  LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG---------DAAAHLPAQLSG 140

Query: 238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
           G +QR+A+AR     P   +LDE  SA+  ++  +M E
Sbjct: 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE 178

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
           G++ + PQ  ++  GT++D +I+  + ++     +  A  L E +           EK  
Sbjct: 487 GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFP-------EKDK 539

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
             + +    LSGG++ R+++AR  Y      +LD   + + V  E  ++E C
Sbjct: 540 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
           WD V D +      LSGG++QRV +AR+    P+  +LDE TSA+    +  +E ++   
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194

Query: 277 CREVGITLFTVSH 289
             +   T+  V+ 
Sbjct: 195 KDDY--TMLLVTR 205

Length = 252

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           E L+ VQL ++ +R         +   LSGG++QRVA+AR     P+  +LDE   A+  
Sbjct: 119 ELLKLVQLDWLADR---------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169

Query: 268 DVEGSMYEYCR----EVGITLFTVSH 289
            V   +  + R    E+ +T   V+H
Sbjct: 170 KVRKELRRWLRRLHDELHVTTVFVTH 195

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD---VEGSMYEYCREVGITLFTVSHRK 291
            SGGEK+R  + +L    P  AILDE  S + +D   +   +    RE G ++  ++H +
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 292 SL 293
            L
Sbjct: 165 RL 166

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS---AVSVD 268
           WD  AD +  LSGGE++RVA+ RL   +P   +LDE T+   A SV 
Sbjct: 155 WD--AD-VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA 198

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 17/112 (15%)

Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
           V QRP     ++ + + +   +  +  K + D  +   L++  L         WD V D 
Sbjct: 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL---------WDQVKDD 156

Query: 232 ID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYE 275
           +      LSGG++QR+ +AR    +P   ++DE  SA+    ++ +E +M+E
Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208

Length = 267

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL- 293
            SGGE+QR+A+AR+        +LDE T  V +D         R++   +F V   K+L 
Sbjct: 99  FSGGERQRLALARILLQDAPIVLLDEPT--VGLDPITE-----RQLLSLIFEVLKDKTLI 151

Query: 294 W-THH 297
           W THH
Sbjct: 152 WITHH 156

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
           WD V D +      LSGG++QRV +AR+   +P   +LDE TSA+    S  +E  + E 
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194

Query: 277 CREVGITLFT 286
             +  I L T
Sbjct: 195 RDQYTIILVT 204

Length = 252

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 215 LGYILNREKGWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM 273
           + +I   + G DTV     V LSGG++QR+A+AR         ILDE TSA+  + E ++
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519

Query: 274 YEYCREV--GITLFTVSHRKS 292
                E+    T   ++HR S
Sbjct: 520 QAALDELQKNRTSLVIAHRLS 540

Length = 582

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
           D V +     SGGEK R+ +A + + RP   +LDE T+ + +D+  ++ E   +    L 
Sbjct: 422 DKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALV 481

Query: 286 TVSHRKSL 293
            VSH + L
Sbjct: 482 VVSHDRHL 489

Length = 638

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSH 289
           LSGG++QRVA+AR     P+  + DE TSA+  ++ G + +  +   E G T+  V+H
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210

Length = 256

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 25/105 (23%)

Query: 200 GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD 259
               A + E L +V L  + +   G          LS G+++RVA+ARL+       ILD
Sbjct: 105 SGNAATIWEALAQVGLAGLEDLPVGQ---------LSAGQQRRVALARLWLSPAPLWILD 155

Query: 260 ECTSAVSVDVEGS------MYEYCREVGITLFTVSHRKSLWTHHE 298
           E  +A  +D EG       M  +  + GI L T        TH  
Sbjct: 156 EPFTA--LDKEGVALLTALMAAHAAQGGIVLLT--------THQP 190

Length = 209

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
           LS  ++Q V +AR      +  ILDE T+A++V     +++  R +   G+ +  +SHR
Sbjct: 146 LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204

Length = 500

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R ++  VPQ P +   ++ + + Y  P   ++ ++     A   E++  +  GY      
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGY------ 466

Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
             DT + +    LSGG++QR+A+AR         +LDE TSA+  + E
Sbjct: 467 --DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQ 254
           K   D  + E L+K  L         WD V D +      LSGG++QR+ +AR     P+
Sbjct: 114 KKELDEIVEESLKKAAL---------WDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE 164

Query: 255 FAILDECTSA 264
             +LDE TSA
Sbjct: 165 VLLLDEPTSA 174

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRK 291
           LSGG++QRV++AR     P+  + DE TSA+  ++ G +    +   E G T+  V+H  
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212

Query: 292 SLWTH 296
               H
Sbjct: 213 GFARH 217

Length = 257

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 182 TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQ 241
            + DQ++Y    + + ++      + E+L++++L    N+          ++ LS G +Q
Sbjct: 86  KVIDQLVYLAQLKGLKKEEAR-RRIDEWLERLELSEYANKR---------VEELSKGNQQ 135

Query: 242 RVAMARLFYHRPQFAILDECTSA---VSVDVEGSMYEYCREVGITLFTVSHR 290
           +V       H P+  ILDE  S    V+V++   +       G T+   +H+
Sbjct: 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKS 292
           LS G+KQ +A+AR+    PQ  ILDE T+ +    E ++ +    V    TL  ++HR S
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS 536

Length = 592

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++  V Q+P     ++ D V Y      +  + I +  + + L+   L         W
Sbjct: 162 RTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL---------W 212

Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYC 277
           D V D +D     LSGG++QR+ +AR     P+  ++DE TSA+    +  +E  + E  
Sbjct: 213 DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK 272

Query: 278 REVGITLFTVS 288
           ++  I + T S
Sbjct: 273 KKYSIIIVTHS 283

Length = 329

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 17/87 (19%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTS 263
             L+K QL         WD V D +D     LSGG++QR+ +AR    +P+  + DE T+
Sbjct: 125 WALEKAQL---------WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175

Query: 264 AV----SVDVEGSMYEYCREVGITLFT 286
            +    +  +E    E  +++ I L T
Sbjct: 176 NLDPENTAKIESLFLELKKDMTIVLVT 202

Length = 250

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
           LSGG+KQR+++AR     P+  ILDE TS++
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSL 610

Length = 1466

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)

Query: 159 GTVTKPPRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITD--ADLTEYLQKVQ- 214
           G VT+P   ++ Y+ Q P +    T+ D VI    +   +   + +  A L +   ++  
Sbjct: 58  GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117

Query: 215 -LGYILNREKGWDTVADWIDV---------------LSGGEKQRVAMARLFYHRPQFAIL 258
            L  +L    GW   A   +                LSGG ++RVA+AR     P   +L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177

Query: 259 DECT 262
           DE T
Sbjct: 178 DEPT 181

Length = 530

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSHR 290
           LS G+K+R  +A+L   RP   ++DE  +      +V V   + E  RE GITL  V+HR
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567

Query: 291 KSL 293
             +
Sbjct: 568 PEV 570

Length = 593

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 217 YILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
             L R   W+ V D +      LSGG++QR+ +AR    +P   ++DE  SA+       
Sbjct: 140 DSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199

Query: 273 MYEYCREV--GITLFTVSH 289
           + E C E+    T+  V+H
Sbjct: 200 VEELCLELKEQYTIIMVTH 218

Length = 274

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
           WD V D +      LSGG++QR+ +AR     P   ++DE TSA+    +  +E  M E 
Sbjct: 132 WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191

Query: 277 CREVGITLFTVS 288
            +   I + T S
Sbjct: 192 KKNYTIVIVTHS 203

Length = 249

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKE-DM--IQKGITDADLTEYLQKVQLGYILNRE 222
           R ++  V Q   +   T+ + + Y  T++ D   I++ +  A   +++ K+ LG  L+  
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG--LDTP 462

Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
            G + V     +LSGG++QR+A+AR         ILDE TSA+  + E  +      +  
Sbjct: 463 IGENGV-----LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517

Query: 281 GITLFTVSHRKS 292
           G T   ++HR S
Sbjct: 518 GRTTLVIAHRLS 529

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDM----IQKGITDADLT---- 207
           L  G      R  L    QR  +      DQ+      +D+    +  G+++A++     
Sbjct: 50  LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR 109

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           E L  V    +  R             LSGGEK+RVA+A     RP   +LDE T+   +
Sbjct: 110 EALTAVGASGLRERP---------THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG--L 158

Query: 268 DVEG-----SMYEYCREVGITLFTVSH 289
           D  G     ++    R  G+T+   +H
Sbjct: 159 DPAGREQMLAILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVG----ITLFTVSH 289
           LSGG+KQRVA+A +   RP+  ILDE TS +       +     E+     +T+ +++H
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199

Length = 277

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 192 TKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH 251
              ++++K        E ++++ L  +L+R+         +  LSGGE QRVA+A     
Sbjct: 180 KVGELLKKVDERGKFDEVVERLGLENVLDRD---------VSELSGGELQRVAIAAALLR 230

Query: 252 RPQFAILDECTS 263
                  DE +S
Sbjct: 231 DADVYFFDEPSS 242

Length = 591

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 198 QKGITDADLTEYLQKVQLGYILNREKGWDTVADWID----VLSGGEKQRVAMARLFYHRP 253
           +K + D  + E L K  L         WD V D +      LSGG++QR+ +AR    +P
Sbjct: 133 RKSVLDEIVEESLTKAAL---------WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP 183

Query: 254 QFAILDECTSAV----SVDVEGSMYEYCREVGITLFTVSHRKSL 293
              +LDE  SA+    +  +E  + E   E  I + T + +++L
Sbjct: 184 AVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQAL 227

Length = 268

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 9/61 (14%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
           LSGG+K+RVA+A +   +P+  +LDE TS   +D  G+      +Y+  +E GIT+   +
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSG--LDPMGASQIMKLLYDLNKE-GITIIIST 194

Query: 289 H 289
           H
Sbjct: 195 H 195

Length = 275

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 23/97 (23%)

Query: 213 VQLGYILNREKG---------------WDTVADWIDV----LSGGEKQRVAMARLFYHRP 253
           V  G  LNR KG               WD V D + V    LSGG++QR+ +AR     P
Sbjct: 109 VAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168

Query: 254 QFAILDECTSAV----SVDVEGSMYEYCREVGITLFT 286
           +  +LDE  SA+    +  VE  M E  ++  I L T
Sbjct: 169 EVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVT 205

Length = 261

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHR 290
           LSGG++QRVA+AR    +P+  +LDE  S +   +   M          +G T   V+H 
Sbjct: 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193

Length = 338

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDA-DLTEYLQKVQLGYILNREKGW 225
           G++ +  Q  ++  GT+++ +I+  + ++   K +  A  L E + K         EK  
Sbjct: 98  GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFP-------EKDN 150

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
             + +    LSGG++ R+++AR  Y      +LD     + V  E  ++E C
Sbjct: 151 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
            S G +Q+VA+AR   H P   +LDE T+ + V    ++ E+ R++   G  +   +H 
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
           SGG++QR+A+AR    +P   ILDE TS++   V+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQ 461

Length = 529

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 166  RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE-KG 224
            R  L  +PQ P +  GT+R   + P  + +       DADL E L++  L  ++ R   G
Sbjct: 1312 RKVLGIIPQAPVLFSGTVRFN-LDPFNEHN-------DADLWESLERAHLKDVIRRNSLG 1363

Query: 225  WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VG 281
             D  V++  +  S G++Q +++AR    R +  +LDE T+AV V  +  + +  RE    
Sbjct: 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423

Query: 282  ITLFTVSHR 290
             T+  ++HR
Sbjct: 1424 CTMLIIAHR 1432

Length = 1622

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 6/36 (16%)

Query: 235 LSGGEKQRVAMARLF------YHRPQFAILDECTSA 264
           LSGGE+QRV +AR+          P++ +LDE TSA
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170

Length = 258

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 199 KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLF-YHRPQFAI 257
            G  + D+   L+ V L  + +   G          LS G+K+RVA+ARL   +RP + I
Sbjct: 101 LGGEELDIAAALEAVGLAPLAHLPFG---------YLSAGQKRRVALARLLVSNRPIW-I 150

Query: 258 LDECTSA 264
           LDE T+A
Sbjct: 151 LDEPTAA 157

Length = 207

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 156 LFGGTVTKPPRGKLFYVPQ-RPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ 214
             GG +++  + ++ Y+P+ R      T+ DQ+ Y    + M +  I          + +
Sbjct: 61  WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI----------QKK 110

Query: 215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA---VSVDVEG 271
           L   L R +        I  LS G +Q++       H P+  ILDE  S    V+V++  
Sbjct: 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170

Query: 272 SMYEYCREVGITLFTVSHR 290
                 +E G T+   SHR
Sbjct: 171 DAIFELKEEGATIIFSSHR 189

Length = 300

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
           SGG++QR+A+AR     P   + DE  SA+ V V
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189

Length = 327

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 225 WDTVADWIDV----LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
           WD + D +      LSGG++QR+ +AR     P   ++DE TSA+
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198

Length = 271

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 25/122 (20%)

Query: 176 PYMTLGTLRDQVIYP----HTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW 231
           P+MT+    D + +        +D I + + +       + +Q+ ++L+R+         
Sbjct: 85  PHMTV---YDNIAFGLKLRKVPKDEIDERVREV-----AELLQIEHLLDRKP-------- 128

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTV 287
              LSGG++QRVA+ R     P+  ++DE  S +     V +   +    + +G T   V
Sbjct: 129 -KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187

Query: 288 SH 289
           +H
Sbjct: 188 TH 189

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 210 LQKVQLGYILNREKGWDTVADWID--------------VLSGGEKQRVAMARLFYHRPQF 255
           L++     +++R K       +I                LSGG +Q+V +AR     P+ 
Sbjct: 363 LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422

Query: 256 AILDECTSAVSVDV 269
            ILDE T    +DV
Sbjct: 423 LILDEPT--RGIDV 434

Length = 500

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 19/93 (20%)

Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD 230
           YV   P +  G +R+ +     K D  ++G  D    E ++++ L  IL+R+        
Sbjct: 168 YVDLIPKVFKGKVRELL----KKVD--ERGKLD----EVVERLGLENILDRD-------- 209

Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTS 263
            I  LSGGE QRVA+A        F   DE TS
Sbjct: 210 -ISELSGGELQRVAIAAALLRDADFYFFDEPTS 241

Length = 590

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSH 289
           LSGGEKQRVA+ R     P+  ++DE  +++ +  +  +  Y      E+ I +  VSH
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187

Length = 352

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCREVGITLFTVSH 289
            LS G+++RVA+ARL+  R    ILDE  +A+       +E  + ++  + G+ + T   
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT--- 185

Query: 290 RKSLWTHHE 298
                TH +
Sbjct: 186 -----THQD 189

Length = 204

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEY 276
           WD V D ++     LSGG++QR+ +AR    +P+  ++DE T+ +    +  +E  ++E 
Sbjct: 136 WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195

Query: 277 CREVGITLFTVS 288
            +E  I L T S
Sbjct: 196 KKEYTIVLVTHS 207

Length = 253

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
             A + E  +++QL   L+R  G           S G KQ+VA+AR   H P   +LDE 
Sbjct: 110 IKARIAELSKRLQLLEYLDRRVG---------EFSTGMKQKVAIARALVHDPSILVLDEP 160

Query: 262 TSAVSVDVEGSMYEY---CREVGITLFTVSH 289
           TS + +      +++    +  G  +   SH
Sbjct: 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191

Length = 245

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R K+  V Q+P     ++ D V +      +  K   D  + E L+K  L         W
Sbjct: 83  RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL---------W 133

Query: 226 DTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
           D V   ++     LSGG++QR+ +AR     P+  +LDE TSA+
Sbjct: 134 DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSAL 177

Length = 250

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAV---SVD-VEGSMYEYCREVGITLFTVSH 289
           LS G+++RVA+ARL        ILDE T+A+    V     +M  +C   G+ + T   
Sbjct: 126 LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
           LSGGE+QRVA+AR   + P+  + DE T  +      S+++   E+    G     V+H 
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205

Query: 291 KSL 293
             L
Sbjct: 206 LQL 208

Length = 233

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 225 WDTVADWID----VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV 280
           WD V D +      LSGG++Q + +AR     P+  +LDE TSA+       + E+ R +
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209

Query: 281 G--ITLFTVSH 289
              +T+  V+H
Sbjct: 210 ADRLTVIIVTH 220

Length = 276

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSH 289
           LSGG++QRV +A    + P   I DE T+A+ V V+  + +  +    E+G+ +  ++H
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216

Length = 534

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSV----DVEGSMYEYCREVGITLFTVSH 289
           LSGG+K+RVA+A +    P+  ILDE T+ +      ++   + E  +E  +T+  VSH
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203

Length = 287

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVS 288
             LSGG++ RVA+ R    +P+  +LDE  S + V +     ++     R  GI    V+
Sbjct: 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVT 192

Query: 289 H 289
           H
Sbjct: 193 H 193

Length = 213

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS------MYEYCREVGITLFTVS 288
           LSGGEK+RVA+A +    PQ  +LDE T+   +D +G       + +     G+T+   +
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAG--LDPQGVKELIDFLNDLPETYGMTVIFST 195

Query: 289 HRKSL 293
           H+  L
Sbjct: 196 HQLDL 200

Length = 277

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 13/98 (13%)

Query: 197 IQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV----LSGGEKQRVAMARLFYHR 252
           I   +  ADL E ++    G  L     W  V D ++     LSGG++QR+ +AR    +
Sbjct: 114 ISAKLPQADLDEIVESALKGAAL-----WQEVKDKLNKSALGLSGGQQQRLCIARALAIK 168

Query: 253 PQFAILDECTSAV----SVDVEGSMYEYCREVGITLFT 286
           P+  ++DE  SA+    ++ VE  ++    E+ I + T
Sbjct: 169 PKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
KOG0058|consensus	716		100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
KOG0060|consensus	659		100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
KOG0055|consensus	1228		100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
KOG0064|consensus	728		100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
KOG0057|consensus	591		100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
KOG0055|consensus	1228		100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
KOG0056|consensus	790		100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
KOG0054|consensus	1381		100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
KOG0054|consensus	1381		100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.98
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.98
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.98
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.98
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.98
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.98
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.98
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.98
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.98
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.98
PTZ00243	1560	ABC transporter; Provisional	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.97
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.97
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.97
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.97
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.97
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.97
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.97
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.97
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.97
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.97
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.97
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.97
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.97
PRK13409	590	putative ATPase RIL; Provisional	99.97
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.97
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.97
PLN03073	718	ABC transporter F family; Provisional	99.97
PRK11147	635	ABC transporter ATPase component; Reviewed	99.97
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.96
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.96
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.96
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.96
COG0488	530	Uup ATPase components of ABC transporters with dup	99.96
COG4559	259	ABC-type hemin transport system, ATPase component	99.96
COG4172	534	ABC-type uncharacterized transport system, duplica	99.96
PLN03211	659	ABC transporter G-25; Provisional	99.96
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.95
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.95
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.95
PRK13409	590	putative ATPase RIL; Provisional	99.95
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.95
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.95
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
COG0488	530	Uup ATPase components of ABC transporters with dup	99.94
PLN03140	1470	ABC transporter G family member; Provisional	99.94
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.93
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.93
PLN03073	718	ABC transporter F family; Provisional	99.93
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.93
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.92
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.92
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.92
KOG0061|consensus	613		99.91
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.91
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.91
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.91
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.9
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.9
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.9
PLN03140	1470	ABC transporter G family member; Provisional	99.9
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.89
KOG0059|consensus	885		99.88
KOG0927|consensus	614		99.87
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.87
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.86
KOG0066|consensus	807		99.85
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.83
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.82
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.82
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.82
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.82
KOG0062|consensus	582		99.8
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.79
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.78
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.78
KOG0927|consensus	614		99.78
KOG0062|consensus	582		99.77
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.75
KOG0065|consensus	1391		99.75
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.74
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.73
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.73
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.72
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.72
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.7
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.68
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.67
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.65
KOG2355|consensus	291		99.56
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.54
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.54
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.52
KOG0066|consensus	807		99.51
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.51
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.48
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.47
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.46
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.43
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.42
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.37
PHA02562	562	46 endonuclease subunit; Provisional	99.31
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.3
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.29
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.29
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.23
PRK10869	553	recombination and repair protein; Provisional	99.22
KOG0063|consensus	592		99.19
KOG0065|consensus	1391		99.15
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.12
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.12
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.12
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.07
PRK03918	880	chromosome segregation protein; Provisional	99.05
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.05
PRK01156	895	chromosome segregation protein; Provisional	99.05
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.03
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.0
KOG0063|consensus	592		98.97
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.96
cd01128	249	rho_factor Transcription termination factor rho is	98.9
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.89
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.89
TIGR00611	365	recf recF protein. All proteins in this family for	98.85
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.83
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.82
PRK00064	361	recF recombination protein F; Reviewed	98.8
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.76
PRK02224	880	chromosome segregation protein; Provisional	98.72
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.68
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.64
PRK14079	349	recF recombination protein F; Provisional	98.46
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.38
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.36
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.35
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.31
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.3
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.12
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.11
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.07
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.0
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.97
PRK13695	174	putative NTPase; Provisional	97.78
PRK05399	854	DNA mismatch repair protein MutS; Provisional	97.58
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.47
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.33
PRK06067	234	flagellar accessory protein FlaH; Validated	97.32
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.32
KOG0964|consensus	1200		97.03
PF13175	415	AAA_15: AAA ATPase domain	96.96
COG4637	373	Predicted ATPase [General function prediction only	96.93
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.9
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	96.84
PRK13891	852	conjugal transfer protein TrbE; Provisional	96.75
TIGR00767	415	rho transcription termination factor Rho. Members	96.66
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.57
PRK13830	818	conjugal transfer protein TrbE; Provisional	96.48
PF13166	712	AAA_13: AAA domain	96.39
KOG0933|consensus	1174		96.25
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	96.04
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.9
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	95.85
KOG0962|consensus	1294		95.76
smart00382	148	AAA ATPases associated with a variety of cellular	95.67
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.59
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	95.57
COG3910	233	Predicted ATPase [General function prediction only	95.54
KOG0018|consensus	1141		95.34
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	95.08
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	95.07
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	94.84
KOG0996|consensus	1293		94.71
PRK08699	325	DNA polymerase III subunit delta'; Validated	94.05
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	93.87
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	93.42
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.1
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	93.07
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	92.86
PRK04863	1486	mukB cell division protein MukB; Provisional	92.86
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	92.16
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	92.11
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	91.49
PRK15494	339	era GTPase Era; Provisional	90.54
PRK01889	356	GTPase RsgA; Reviewed	90.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	90.29
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	90.1
PRK07594	433	type III secretion system ATPase SsaN; Validated	89.56
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	89.32
PRK11098	409	microcin B17 transporter; Reviewed	88.72
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	88.46
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	87.67

>KOG0058|consensus

Probab=100.00  E-value=2e-50  Score=397.43  Aligned_cols=242  Identities=22%  Similarity=0.267  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeE
Q psy11400          9 TMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITL   88 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~   88 (298)
                      ++.---.++..++.++..+|.++.+..++.+|++++++..+.+...               +.......++.|+|+||+|
T Consensus       409 sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~---------------G~~~p~~~~G~IeF~~VsF  473 (716)
T KOG0058|consen  409 SFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT---------------GTLAPDHLQGVIEFEDVSF  473 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC---------------CccccccccceEEEEEeee
Confidence            3333446778999999999999999999999999999976654321               0000012457899999999


Q ss_pred             ecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec
Q psy11400         89 GLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK  163 (298)
Q Consensus        89 ~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~  163 (298)
                      +||.+. .+       +|+|+||+|+|||++|+|        |||  ||  +..+       |    ..+|+|++|+|..
T Consensus       474 aYP~Rp~~~-------Vlk~lsfti~pGe~vALV--------GPSGsGKSTiasL-------L----~rfY~PtsG~Ill  527 (716)
T KOG0058|consen  474 AYPTRPDVP-------VLKNLSFTIRPGEVVALV--------GPSGSGKSTIASL-------L----LRFYDPTSGRILL  527 (716)
T ss_pred             ecCCCCCch-------hhcCceeeeCCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCCCeEEE
Confidence            999764 33       999999999999999999        999  99  8888       7    8889999999863


Q ss_pred             -----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-
Q psy11400        164 -----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-  230 (298)
Q Consensus       164 -----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-  230 (298)
                                 ..|++||+|.|+|.+|.+||+|||.|+.       ...+++++..+++.++.++++.. |+||+|.++ 
T Consensus       528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-------~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGE  600 (716)
T KOG0058|consen  528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-------DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGE  600 (716)
T ss_pred             CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-------CCCCHHHHHHHHHHhChHHHHHhCccccccccCC
Confidence                       2478999999999999999999999986       25788999999999999988755 999999987 


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ++.+||||||||+||||||++||.||||||+|||||.++|..+.+.+.+  .++|||+|+||++++++.|
T Consensus       601 kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad  670 (716)
T KOG0058|consen  601 KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHAD  670 (716)
T ss_pred             ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhcc
Confidence            8999999999999999999999999999999999999999999999875  4899999999999998754

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=5.7e-48  Score=390.06  Aligned_cols=248  Identities=20%  Similarity=0.231  Sum_probs=218.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++.++.-+...+.+|+.++++.+.+++++..+.+|+.++++...|.+.+..              ........+.|+|
T Consensus       409 lG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~--------------~~~~~~~~g~I~~  474 (709)
T COG2274         409 LGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT--------------LIHLPKLQGEIEF  474 (709)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc--------------cccccccCceEEE
Confidence            56788888889999999999999999999999999999999998766432110              0011234568999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+..+++       +|+|+||+|++||++||+        |+|  ||  |+|+       +    .|+|+|++|
T Consensus       475 ~nvsf~y~~~~~~-------vL~~isL~I~~Ge~vaIv--------G~SGsGKSTL~KL-------L----~gly~p~~G  528 (709)
T COG2274         475 ENVSFRYGPDDPP-------VLEDLSLEIPPGEKVAIV--------GRSGSGKSTLLKL-------L----LGLYKPQQG  528 (709)
T ss_pred             EEEEEEeCCCCcc-------hhhceeEEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence            9999999766544       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|..           ..|++||||+|++++|++|++|||+++.       +..+++++.++++..++++++.. |.||+|
T Consensus       529 ~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-------p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t  601 (709)
T COG2274         529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-------PEATDEEIIEAAQLAGAHEFIENLPMGYDT  601 (709)
T ss_pred             eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence            9863           2488999999999999999999999975       35678899999999999988765 999999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ .+.+||||||||++|||||+++|++||||||||+||+++|+.+.+.+.+.  |+|+|+||||++++++.|
T Consensus       602 ~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ad  675 (709)
T COG2274         602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSAD  675 (709)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhcc
Confidence            976 78899999999999999999999999999999999999999999999874  699999999999998764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2.3e-46  Score=371.17  Aligned_cols=240  Identities=24%  Similarity=0.266  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400          6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (298)
                      .+.++..++..+..|+..+...+..+++...+.+|+.++++..++.....          .  ..........+.++|+|
T Consensus       272 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----------~--~~~~~~~~~~~~I~~~~  339 (529)
T TIGR02868       272 TLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV----------V--PAAGALGLGKPTLELRD  339 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC----------C--CCCcccCCCCceEEEEE
Confidence            44455555667778888888888999999999999999886543211100          0  00000011234699999


Q ss_pred             eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400         86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV  161 (298)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i  161 (298)
                      |+|+|+++++        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+|+|++|+|
T Consensus       340 vsf~Y~~~~~--------vL~~isl~i~~G~~vaIv--------G~SGsGKSTLl~l-------L----~g~~~p~~G~I  392 (529)
T TIGR02868       340 LSFGYPGSPP--------VLDGVSLDLPPGERVAIL--------GPSGSGKSTLLML-------L----TGLLDPLQGEV  392 (529)
T ss_pred             EEEecCCCCc--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCcEE
Confidence            9999975444        999999999999999999        999  99  9999       8    99999999998


Q ss_pred             ecc----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc
Q psy11400        162 TKP----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD  230 (298)
Q Consensus       162 ~~~----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~  230 (298)
                      ...          .|++|+||||+|++|++|++|||.++.       +..+++++.++++.+++++++.+ |+|+||..+
T Consensus       393 ~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig  465 (529)
T TIGR02868       393 TLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGR-------PDATDEELWAALERVGLADWLRSLPDGLDTVLG  465 (529)
T ss_pred             EECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccC-------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence            643          256899999999999999999999974       24578899999999999988766 899999876


Q ss_pred             -cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCc
Q psy11400        231 -WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRK  291 (298)
Q Consensus       231 -~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l  291 (298)
                       ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+.  ++|+|+||||+
T Consensus       466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence             78899999999999999999999999999999999999999999998763  79999999995

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0060|consensus

Probab=100.00  E-value=2e-46  Score=360.09  Aligned_cols=270  Identities=47%  Similarity=0.735  Sum_probs=236.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccC-------CCCCCCCcee
Q psy11400          3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNG-------VDSLSEGIFI   75 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   75 (298)
                      ....++.+.+++..+.+++++++...+.++++++++.||.++++++.++..+.+++++..+..       ...++.++..
T Consensus       349 L~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~  428 (659)
T KOG0060|consen  349 LSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAE  428 (659)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccc
Confidence            356788899999999999999999999999999999999999999999876655554422111       0122223344


Q ss_pred             ecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         76 YRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        76 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      +.++.|+|++|++..|++..-       +++|+||+|+.|+.+.|+        |||  ||  |+|+       +    +
T Consensus       429 ~~Dn~i~~e~v~l~tPt~g~~-------lie~Ls~~V~~g~~LLIt--------G~sG~GKtSLlRv-------l----g  482 (659)
T KOG0060|consen  429 PADNAIEFEEVSLSTPTNGDL-------LIENLSLEVPSGQNLLIT--------GPSGCGKTSLLRV-------L----G  482 (659)
T ss_pred             cccceEEeeeeeecCCCCCce-------eeeeeeeEecCCCeEEEE--------CCCCCchhHHHHH-------H----h
Confidence            556789999999999984331       788999999999999999        999  99  9999       8    9


Q ss_pred             cccccCCceeeccCCC---cEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc-
Q psy11400        152 QLWPLFGGTVTKPPRG---KLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT-  227 (298)
Q Consensus       152 ~l~~~~~G~i~~~~r~---~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~-  227 (298)
                      |+||..+|+++.+.+.   .+.||||.||+..||+||++.||....+......+++++.+.|+.+++.+++++.+|||. 
T Consensus       483 gLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~  562 (659)
T KOG0060|consen  483 GLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQ  562 (659)
T ss_pred             cccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCch
Confidence            9999999999987654   499999999999999999999997655554566789999999999999999999999995 


Q ss_pred             -ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400        228 -VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 -~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~  298 (298)
                       ..+|...||+|||||+++||.++++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++++||+
T Consensus       563 ~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd  634 (659)
T KOG0060|consen  563 VDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHD  634 (659)
T ss_pred             hhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhh
Confidence             45699999999999999999999999999999999999999999999999999999999999999999996

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-45  Score=376.59  Aligned_cols=245  Identities=19%  Similarity=0.176  Sum_probs=209.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      +++++++..+...+..|+..++..+.+++++..+.+|+.++++..++.+..               . .......+.++|
T Consensus       391 iG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---------------~-~~~~~~~~~I~~  454 (686)
T TIGR03797       391 LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---------------K-TDPGKLSGAIEV  454 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---------------c-CCCCCCCceEEE
Confidence            456677777788889999999999999999999999999998754322110               0 000112346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+.+..+       +|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       455 ~nvsf~Y~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~sGsGKSTLlkl-------L----~gl~~p~~G  508 (686)
T TIGR03797       455 DRVTFRYRPDGPL-------ILDDVSLQIEPGEFVAIV--------GPSGSGKSTLLRL-------L----LGFETPESG  508 (686)
T ss_pred             EEEEEEcCCCCcc-------ceeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCC
Confidence            9999999744333       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|..+           .|++|+||||+|++|++|++|||.++.       + .+++++.++++.++++++++. |.|+||
T Consensus       509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-------~-~~~e~i~~al~~a~l~~~i~~lp~G~dt  580 (686)
T TIGR03797       509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGA-------P-LTLDEAWEAARMAGLAEDIRAMPMGMHT  580 (686)
T ss_pred             EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCC-------C-CCHHHHHHHHHHcCcHHHHHhccccccc
Confidence            98532           367899999999999999999999864       2 568899999999999987765 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++.++|+|+||||+++++..|
T Consensus       581 ~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D  652 (686)
T TIGR03797       581 VISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNAD  652 (686)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCC
Confidence            876 78899999999999999999999999999999999999999999999888899999999999887654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.3e-45  Score=368.30  Aligned_cols=234  Identities=20%  Similarity=0.200  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCcee-ecCCcEEEeeeeEecCCC
Q psy11400         15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFI-YRNNLRGRLGITLGLRSG   93 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~~~~   93 (298)
                      ..+..|+..+...+..++++..+.+|+.++++..++....               ...... .....++|+||+|.|+++
T Consensus       298 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---------------~~~~~~~~~~~~i~~~~vsf~~~~~  362 (588)
T PRK11174        298 PEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ---------------GEKELASNDPVTIEAEDLEILSPDG  362 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---------------CccccCCCCCceEEEEeeEEeccCC
Confidence            4567889999999999999999999999998653211100               000000 112359999999877654


Q ss_pred             CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----
Q psy11400         94 GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----  164 (298)
Q Consensus        94 ~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----  164 (298)
                      .+        +|+|+||+|++|++++|+        |+|  ||  |+++       +    .|+| |++|+|...     
T Consensus       363 ~~--------vL~~i~l~i~~G~~vaIv--------G~SGsGKSTL~~l-------L----~g~~-p~~G~I~i~g~~i~  414 (588)
T PRK11174        363 KT--------LAGPLNFTLPAGQRIALV--------GPSGAGKTSLLNA-------L----LGFL-PYQGSLKINGIELR  414 (588)
T ss_pred             Ce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC-CCCcEEEECCEecc
Confidence            44        999999999999999999        999  99  9999       8    9999 899998632     


Q ss_pred             ------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCC
Q psy11400        165 ------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLS  236 (298)
Q Consensus       165 ------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LS  236 (298)
                            .|++|+||||+|++|++|++|||.++.       +..+++++.++++.+++++++++ |+|+||..+ .+.+||
T Consensus       415 ~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-------~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS  487 (588)
T PRK11174        415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-------PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS  487 (588)
T ss_pred             cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-------CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence                  367899999999999999999999974       34678999999999999988765 899999876 788999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ||||||++|||||+++|+++|||||||+||+++++.+.+.+++  .++|+|+||||+++++..|
T Consensus       488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD  551 (588)
T PRK11174        488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWD  551 (588)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCC
Confidence            9999999999999999999999999999999999999998876  4799999999999987654

>KOG0055|consensus

Probab=100.00  E-value=3.8e-46  Score=384.83  Aligned_cols=249  Identities=20%  Similarity=0.266  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400          5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL   84 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   84 (298)
                      .+++.....+..-+..++......+++.++..+..+++++++..+.++...             +.........+.|+|+
T Consensus       925 ~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~-------------~~~~~~~~~~G~I~~~  991 (1228)
T KOG0055|consen  925 EDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS-------------TSGGKLPNVKGDIEFR  991 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC-------------CCCCccccceeEEEEe
Confidence            456666677777788888888999999999999999999999765443210             0111122335679999


Q ss_pred             eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400         85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT  160 (298)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~  160 (298)
                      ||+|+||.....      ++++|+||+|++|+.+|||        |||  ||  ++.+       |    .++|.|++|.
T Consensus       992 ~V~F~YPsRP~~------~Il~~l~l~i~~GqTvALV--------G~SGsGKSTvI~L-------L----eRfYdp~~G~ 1046 (1228)
T KOG0055|consen  992 NVSFAYPTRPDV------PVLNNLSLSIRAGQTVALV--------GPSGSGKSTVISL-------L----ERFYDPDAGK 1046 (1228)
T ss_pred             eeEeeCCCCCCc------hhhcCCcEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCCCe
Confidence            999999965421      2999999999999999999        999  99  8888       5    6666677777


Q ss_pred             eec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccc
Q psy11400        161 VTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTV  228 (298)
Q Consensus       161 i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~  228 (298)
                      |..           ..|++||.|.|+|.||++|++|||+|+.       ..++.+++.++++.+++++++.. |+||||.
T Consensus      1047 V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-------~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1047 VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-------EEVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred             EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-------CCCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence            643           2488999999999999999999999983       13788999999999999988754 9999999


Q ss_pred             cc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        229 AD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       229 ~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ++ ++.+||||||||+|||||+++||+||+|||+|||||.++|+.+.+.+.+  .|+|.|+|+||+++++..|
T Consensus      1120 vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD 1192 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNAD 1192 (1228)
T ss_pred             cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCC
Confidence            87 8999999999999999999999999999999999999999999999986  4999999999999998764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=3.1e-45  Score=374.72  Aligned_cols=254  Identities=21%  Similarity=0.236  Sum_probs=211.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++.++..++..+..|+..+...+.+++++..+.+|+.++++..++.......      . .. ..........+.|++
T Consensus       409 ~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~------~-~~-~~~~~~~~~~~~I~~  480 (710)
T TIGR03796       409 IGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE------A-PA-AGSEPSPRLSGYVEL  480 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc------c-cc-cccccCCCCCCeEEE
Confidence            456677777888899999999999999999999999999998764332111000      0 00 000000112356999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+....+       +|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       481 ~~vsf~y~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~sGsGKSTLlkl-------L----~gl~~p~~G  534 (710)
T TIGR03796       481 RNITFGYSPLEPP-------LIENFSLTLQPGQRVALV--------GGSGSGKSTIAKL-------V----AGLYQPWSG  534 (710)
T ss_pred             EEEEEecCCCCCC-------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence            9999999854333       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .|++|+||||+|++|++|++|||.++.       +..+++++.++++.++++++++. |+|++|
T Consensus       535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-------~~~~~~~i~~al~~~~l~~~i~~lp~gl~t  607 (710)
T TIGR03796       535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-------PTIPDADLVRACKDAAIHDVITSRPGGYDA  607 (710)
T ss_pred             EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-------CCCCHHHHHHHHHHhCCHHHHHhCcCcccc
Confidence            98632           377899999999999999999998863       24678899999999999987765 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++.++|+|+||||+++++..|
T Consensus       608 ~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D  679 (710)
T TIGR03796       608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCD  679 (710)
T ss_pred             eeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence            876 78899999999999999999999999999999999999999999999888999999999999887654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=4e-45  Score=365.17  Aligned_cols=245  Identities=22%  Similarity=0.279  Sum_probs=211.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++..+...+..+..|+..+...+..++....+.+|+.++++..++.....              .  ......+.|+|
T Consensus       268 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--------------~--~~~~~~~~I~f  331 (567)
T COG1132         268 VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP--------------D--PLKDTIGSIEF  331 (567)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC--------------C--CCCCCCCeEEE
Confidence            5667888888889999999999999999999999999999998743322110              0  01112346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++++        +++|+||++++||++||+        |||  ||  ++++       +    .++|+|++|
T Consensus       332 ~~vsf~y~~~~~--------vl~~is~~i~~Ge~vaiV--------G~sGsGKSTl~~L-------L----~r~~~~~~G  384 (567)
T COG1132         332 ENVSFSYPGKKP--------VLKDISFSIEPGEKVAIV--------GPSGSGKSTLIKL-------L----LRLYDPTSG  384 (567)
T ss_pred             EEEEEEcCCCCc--------cccCceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCCCCC
Confidence            999999985444        999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|..+           .|++|+||||+|++|++|++|||.++.       +..+++++.++++.+++++++.+ |+||||
T Consensus       385 ~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-------~~at~eei~~a~k~a~~~d~I~~lp~g~dt  457 (567)
T COG1132         385 EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR-------PDATDEEIEEALKLANAHEFIANLPDGYDT  457 (567)
T ss_pred             eEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC-------CCCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence            98642           378899999999999999999999986       34678999999999999987755 889999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ .+.+||||||||++||||++++|+++|||||||+||+++|..+.+.+++  .++|+|+|+||+++++..|
T Consensus       458 ~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD  531 (567)
T COG1132         458 IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD  531 (567)
T ss_pred             eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCC
Confidence            987 7889999999999999999999999999999999999999999998864  4789999999999988764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=5.4e-45  Score=372.82  Aligned_cols=247  Identities=21%  Similarity=0.252  Sum_probs=207.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++..+......+..|+..+...+.++++..++.+|+.++++..++....               .........+.|+|
T Consensus       417 ~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---------------~~~~~~~~~~~I~~  481 (711)
T TIGR00958       417 SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---------------GTLAPLNLEGLIEF  481 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---------------CCCCCCCCCCeEEE
Confidence            355666677778899999999999999999999999999998754322110               00000112346999


Q ss_pred             eeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         84 LGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        84 ~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      +||+|+||+.. .+       +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+|+|++
T Consensus       482 ~nVsf~Y~~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~SGsGKSTLl~l-------L----~gl~~p~~  535 (711)
T TIGR00958       482 QDVSFSYPNRPDVP-------VLKGLTFTLHPGEVVALV--------GPSGSGKSTVAAL-------L----QNLYQPTG  535 (711)
T ss_pred             EEEEEECCCCCCCc-------cccCceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCC
Confidence            99999998532 22       999999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400        159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD  226 (298)
Q Consensus       159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d  226 (298)
                      |+|..+           .+++|+||||+|++|++|++|||.++.       ...+++++.++++.+++++++++ |+|+|
T Consensus       536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-------~~~~~e~i~~al~~a~l~~~i~~lp~Gld  608 (711)
T TIGR00958       536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-------TDTPDEEIMAAAKAANAHDFIMEFPNGYD  608 (711)
T ss_pred             CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-------CCCCHHHHHHHHHHcCCHHHHHhCCCccC
Confidence            998642           357899999999999999999999975       24567889999999999998876 88999


Q ss_pred             cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400        227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~  298 (298)
                      |..+ ++.+||||||||++||||++++|+++|||||||+||+++++.+.+.....++|+|+||||+++++.+|
T Consensus       609 T~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD  681 (711)
T TIGR00958       609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERAD  681 (711)
T ss_pred             CcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCC
Confidence            9876 77899999999999999999999999999999999999999999843335899999999999987664

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=3e-44  Score=364.20  Aligned_cols=268  Identities=58%  Similarity=0.985  Sum_probs=220.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCC--------C-CCCCCce
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV--------D-SLSEGIF   74 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~   74 (298)
                      +..|+.+..++.++..|+++++..+.+++++.++.+|+.++++..++................        . .......
T Consensus       366 ~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (659)
T TIGR00954       366 MQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIV  445 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence            456888899999999999999999999999999999999999987765421110000000000        0 0000011


Q ss_pred             eecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400         75 IYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR  150 (298)
Q Consensus        75 ~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~  150 (298)
                      ....+.++++||+|.|+++..        +++|+||+|++||+++|+        |||  ||  |+++       +    
T Consensus       446 ~~~~~~i~~~nv~~~~~~~~~--------il~~isl~i~~Ge~~~Iv--------G~nGsGKSTLl~l-------L----  498 (659)
T TIGR00954       446 EYQDNGIKFENIPLVTPNGDV--------LIESLSFEVPSGNHLLIC--------GPNGCGKSSLFRI-------L----  498 (659)
T ss_pred             ccCCCeEEEEeeEEECCCCCe--------eeecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----
Confidence            112356999999999975444        999999999999999999        999  99  9999       8    


Q ss_pred             ccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc
Q psy11400        151 DQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD  230 (298)
Q Consensus       151 ~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~  230 (298)
                      +|+|+|++|++..+.+++++||||+|+++++|++||+.++............++++.++++.+++.++.+++.|+|+..+
T Consensus       499 ~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~  578 (659)
T TIGR00954       499 GELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD  578 (659)
T ss_pred             hCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc
Confidence            99999999999877778899999999999999999999875322111123456788999999999998888889999988


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~  298 (298)
                      |+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++.++|+|+||||++++++||
T Consensus       579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d  646 (659)
T TIGR00954       579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHE  646 (659)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCC
Confidence            99999999999999999999999999999999999999999999999888999999999999998875

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=6.1e-45  Score=372.43  Aligned_cols=248  Identities=18%  Similarity=0.204  Sum_probs=209.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++.++..+...+..|+.+++..+.+++++..+.+|+.++++..++.....              .........+.|++
T Consensus       411 ~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--------------~~~~~~~~~~~I~~  476 (708)
T TIGR01193       411 LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK--------------KRTELNNLNGDIVI  476 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc--------------cccCCCCCCCcEEE
Confidence            4566777777788899999999999999999999999999987543322100              00001112346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+.+.+        +|+|+||+|++|++++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       477 ~~vsf~y~~~~~--------iL~~isl~i~~G~~vaIv--------G~SGsGKSTLlkl-------L----~gl~~p~~G  529 (708)
T TIGR01193       477 NDVSYSYGYGSN--------ILSDISLTIKMNSKTTIV--------GMSGSGKSTLAKL-------L----VGFFQARSG  529 (708)
T ss_pred             EEEEEEcCCCCc--------ceeceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCCCCc
Confidence            999999974444        999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .|++|+||||+|++|++|++|||.++..      +..+++++.++++.+++++++.. |.|+|+
T Consensus       530 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt  603 (708)
T TIGR01193       530 EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK------ENVSQDEIWAACEIAEIKDDIENMPLGYQT  603 (708)
T ss_pred             EEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC------CCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence            98642           3678999999999999999999998731      24578899999999999988765 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++|||||+++|++||||||||+||+++++.+.+.+++ .++|+|+||||+++++..|
T Consensus       604 ~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D  676 (708)
T TIGR01193       604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSD  676 (708)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCC
Confidence            876 7889999999999999999999999999999999999999999998876 3799999999999887654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>KOG0064|consensus

Probab=100.00  E-value=2.5e-45  Score=348.94  Aligned_cols=270  Identities=44%  Similarity=0.760  Sum_probs=243.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCC---------CCCCC-
Q psy11400          2 SNVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGV---------DSLSE-   71 (298)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-   71 (298)
                      +|++.|++..++|.+.+.++.+++.++.+++++++++.|+.++++.+++...+.++++.+.+...         ..+.. 
T Consensus       393 srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~  472 (728)
T KOG0064|consen  393 SRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPT  472 (728)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCc
Confidence            57999999999999999999999999999999999999999999999998877666543221110         00000 


Q ss_pred             CceeecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccc
Q psy11400         72 GIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLG  147 (298)
Q Consensus        72 ~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~  147 (298)
                      ...+...+.|.++||.+-.|.++.        ++..++|+|++|-.+.|+        |||  ||  |+|+       + 
T Consensus       473 ~~~i~~~~gI~lenIpvItP~~~v--------vv~~Ltf~i~~G~hLLIt--------GPNGCGKSSLfRI-------L-  528 (728)
T KOG0064|consen  473 TDAIRNFNGIILENIPVITPAGDV--------LVPKLTFQIEPGMHLLIT--------GPNGCGKSSLFRI-------L-  528 (728)
T ss_pred             cchhhcccceEEecCceeccCcce--------eecceeEEecCCceEEEE--------CCCCccHHHHHHH-------H-
Confidence            112233457999999999998887        899999999999999999        999  99  9999       8 


Q ss_pred             cccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        148 TLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       148 ~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                         +|+||.+.|....|.+.+|.|+||.||+.-||+||+|.||...++..+++..++++...|+.+.|++++++..|||.
T Consensus       529 ---ggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da  605 (728)
T KOG0064|consen  529 ---GGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDA  605 (728)
T ss_pred             ---hccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhh
Confidence               99999999999999888999999999999999999999999888877788899999999999999999999999999


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhcC
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~~  298 (298)
                      +.+|-..||||||||+++||.++|+|++.+|||+|||+.++.|..+++.++..|.+.|.||||+++|++|+
T Consensus       606 ~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~  676 (728)
T KOG0064|consen  606 VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHT  676 (728)
T ss_pred             hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999984

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.3e-44  Score=369.27  Aligned_cols=248  Identities=21%  Similarity=0.209  Sum_probs=209.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++..+..++..+..|+..+...+.+++....+.+|+.++++..++....              ..........+.|+|
T Consensus       401 ~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--------------~~~~~~~~~~~~I~~  466 (694)
T TIGR03375       401 MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--------------TRFLHRPRLQGEIEF  466 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--------------CCCCCCCCccceEEE
Confidence            456677777778889999999999999999999999999998764321100              000000112346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..+       +|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       467 ~~vsf~Y~~~~~~-------vL~~i~l~i~~G~~iaIv--------G~sGsGKSTLlkl-------L----~gl~~p~~G  520 (694)
T TIGR03375       467 RNVSFAYPGQETP-------ALDNVSLTIRPGEKVAII--------GRIGSGKSTLLKL-------L----LGLYQPTEG  520 (694)
T ss_pred             EEEEEEeCCCCcc-------ceeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence            9999999754433       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .|++|+||||+|++|++|++|||.++.       +..+++++.++++.+++.++++. |+|+||
T Consensus       521 ~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-------~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T  593 (694)
T TIGR03375       521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-------PYADDEEILRAAELAGVTEFVRRHPDGLDM  593 (694)
T ss_pred             eEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-------CCCCHHHHHHHHHHcChHHHHHhCcccccc
Confidence            98632           367899999999999999999999874       24678899999999999987765 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+.  ++|+|+||||+++++.+|
T Consensus       594 ~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D  667 (694)
T TIGR03375       594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD  667 (694)
T ss_pred             eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence            876 78899999999999999999999999999999999999999999988763  799999999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=361.83  Aligned_cols=247  Identities=19%  Similarity=0.236  Sum_probs=206.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++..+..++..+..|+.++...+..++....+.+|+.++++..++...+                ........+.+++
T Consensus       281 ~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~----------------~~~~~~~~~~i~~  344 (582)
T PRK11176        281 AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG----------------KRVIERAKGDIEF  344 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC----------------CcCCCCCCCeEEE
Confidence            355666777778888999999999999999999999998887642211100                0000112246999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..+       +|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+++|++|
T Consensus       345 ~~vsf~y~~~~~~-------il~~i~l~i~~G~~~aIv--------G~sGsGKSTLl~l-------l----~gl~~p~~G  398 (582)
T PRK11176        345 RNVTFTYPGKEVP-------ALRNINFKIPAGKTVALV--------GRSGSGKSTIANL-------L----TRFYDIDEG  398 (582)
T ss_pred             EEEEEecCCCCCc-------cccCceEEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCc
Confidence            9999999754333       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .+++|+||||+|++|++|++|||.++..      ...+++++.++++.+++++++++ |+|+||
T Consensus       399 ~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~~~~~~i~~al~~~~l~~~i~~lp~Gldt  472 (582)
T PRK11176        399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART------EQYSREQIEEAARMAYAMDFINKMDNGLDT  472 (582)
T ss_pred             eEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC------CCCCHHHHHHHHHHhCcHHHHHhcccccCc
Confidence            98532           2578999999999999999999998641      13578899999999999988765 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++|||||+++|+++|||||||+||++++..+.+.+++  .++|+|+||||++.++..|
T Consensus       473 ~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D  546 (582)
T PRK11176        473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKAD  546 (582)
T ss_pred             eeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence            866 7889999999999999999999999999999999999999999998876  3799999999999887654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=8.6e-44  Score=352.77  Aligned_cols=244  Identities=20%  Similarity=0.236  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400          6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (298)
                      .+..+..+...+..|+..+...+..++....+.+|+.++++..++...               ..... ....+.++++|
T Consensus       262 ~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---------------~~~~~-~~~~~~i~~~~  325 (529)
T TIGR02857       262 TGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---------------KAPVT-AAPAPSLEFSG  325 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---------------CcCCC-CCCCCeEEEEE
Confidence            344445555667788888888888999999999999998863211000               00000 01123699999


Q ss_pred             eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400         86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV  161 (298)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i  161 (298)
                      |+|+|+++..+       +++|+||+|++|++++|+        |+|  ||  |+++       +    .|+|+|++|+|
T Consensus       326 v~f~y~~~~~~-------il~~i~l~i~~G~~~~iv--------G~sGsGKSTL~~l-------l----~g~~~~~~G~I  379 (529)
T TIGR02857       326 LSVAYPGRRAP-------ALRPVSFTVPPGERVALV--------GPSGAGKSTLLNL-------L----LGFVDPTEGSI  379 (529)
T ss_pred             EEEECCCCCcc-------cccceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCcEE
Confidence            99999865422       999999999999999999        999  99  9999       8    99999999998


Q ss_pred             ecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc
Q psy11400        162 TKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA  229 (298)
Q Consensus       162 ~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~  229 (298)
                      ...           .+++++||||+|++|++|++||+.++.       +..+++++.++++.+++.+++++ |+|+||..
T Consensus       380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~-------~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v  452 (529)
T TIGR02857       380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR-------PDASDAEIRRALERAGLDEFVAALPQGLDTLI  452 (529)
T ss_pred             EECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC-------CCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence            532           256899999999999999999999864       23567889999999999988766 88999987


Q ss_pred             c-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        230 D-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       230 ~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      + ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++  .++|+|+||||+++++.+|
T Consensus       453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d  524 (529)
T TIGR02857       453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERAD  524 (529)
T ss_pred             ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCC
Confidence            6 7889999999999999999999999999999999999999999998876  4899999999999987654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=6.5e-44  Score=356.31  Aligned_cols=247  Identities=17%  Similarity=0.197  Sum_probs=207.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++....               . .......+.+++
T Consensus       270 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---------------~-~~~~~~~~~i~~  333 (571)
T TIGR02203       270 AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---------------T-RAIERARGDVEF  333 (571)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---------------C-CCCCCCCCeEEE
Confidence            345666667778889999999999999999999999999887643221100               0 000112346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|++...+       +++|+||++++||+++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       334 ~~v~f~y~~~~~~-------il~~inl~i~~G~~v~Iv--------G~sGsGKSTLl~l-------L----~gl~~~~~G  387 (571)
T TIGR02203       334 RNVTFRYPGRDRP-------ALDSISLVIEPGETVALV--------GRSGSGKSTLVNL-------I----PRFYEPDSG  387 (571)
T ss_pred             EEEEEEcCCCCCc-------cccCeeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCC
Confidence            9999999754333       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .+++|+|+||+|++|++|++|||.++..      ...+++++.++++.+++++++++ |+|+|+
T Consensus       388 ~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt  461 (571)
T TIGR02203       388 QILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT------EQADRAEIERALAAAYAQDFVDKLPLGLDT  461 (571)
T ss_pred             eEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC------CCCCHHHHHHHHHHcChHHHHHhCcCcccc
Confidence            98632           3578999999999999999999998741      14678899999999999988766 889999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++||||++++|++++||||||+||+.+++.+.+.+++.  ++|+|+||||++..+.+|
T Consensus       462 ~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D  535 (571)
T TIGR02203       462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD  535 (571)
T ss_pred             eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCC
Confidence            876 78899999999999999999999999999999999999999999988763  799999999999887664

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=9.1e-44  Score=357.02  Aligned_cols=241  Identities=21%  Similarity=0.211  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400          6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (298)
                      .+..+...+..+..|+..+...+..+++...+.+|+.++++..++...               ..  ......+.++|+|
T Consensus       283 ~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---------------~~--~~~~~~~~i~~~~  345 (592)
T PRK10790        283 VLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---------------ND--DRPLQSGRIDIDN  345 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---------------CC--ccCCCCCeEEEEE
Confidence            445555556678888889999999999999999999988764321100               00  0011234699999


Q ss_pred             eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400         86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV  161 (298)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i  161 (298)
                      |+|+|+++.+        +|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+|+|++|+|
T Consensus       346 v~f~y~~~~~--------il~~i~l~i~~Ge~iaIv--------G~SGsGKSTLl~l-------L----~gl~~p~~G~I  398 (592)
T PRK10790        346 VSFAYRDDNL--------VLQNINLSVPSRGFVALV--------GHTGSGKSTLASL-------L----MGYYPLTEGEI  398 (592)
T ss_pred             EEEEeCCCCc--------eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCCCCceE
Confidence            9999975443        999999999999999999        999  99  9999       8    99999999998


Q ss_pred             ecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc
Q psy11400        162 TKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA  229 (298)
Q Consensus       162 ~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~  229 (298)
                      ...           .+++|+||||+|++|++|++|||.++.        ..+++++.++++.+++++++++ |+|+|+..
T Consensus       399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i  470 (592)
T PRK10790        399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--------DISEEQVWQALETVQLAELARSLPDGLYTPL  470 (592)
T ss_pred             EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--------CCCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence            532           367899999999999999999999864        3567889999999999998866 89999987


Q ss_pred             c-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        230 D-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       230 ~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      + .+.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++  .++|+|+||||++..+..|
T Consensus       471 ~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D  542 (592)
T PRK10790        471 GEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEAD  542 (592)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence            6 7789999999999999999999999999999999999999999998876  3799999999999887654

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=2.4e-43  Score=353.83  Aligned_cols=247  Identities=21%  Similarity=0.235  Sum_probs=201.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+.++..++..+..|+.++...+..+.....+..|+.++++..++.+..              ..........+.+++
T Consensus       272 ~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--------------~~~~~~~~~~~~I~~  337 (588)
T PRK13657        272 VGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--------------PGAIDLGRVKGAVEF  337 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--------------CCCCCcCCCCCeEEE
Confidence            345566666677788888888888888888888888877775532211100              000000112246999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..        +|+|+||++++|++++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       338 ~~vsf~y~~~~~--------iL~~inl~i~~G~~v~Iv--------G~sGsGKSTLl~l-------L----~gl~~p~~G  390 (588)
T PRK13657        338 DDVSFSYDNSRQ--------GVEDVSFEAKPGQTVAIV--------GPTGAGKSTLINL-------L----QRVFDPQSG  390 (588)
T ss_pred             EEEEEEeCCCCc--------eecceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCCCCC
Confidence            999999975444        999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .+++|+||||+|++|++|++|||.++.       +..+++++.++++.+++++++++ |+|+|+
T Consensus       391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-------~~~~d~~i~~al~~~~l~~~i~~lp~gldt  463 (588)
T PRK13657        391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-------PDATDEEMRAAAERAQAHDFIERKPDGYDT  463 (588)
T ss_pred             EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-------CCCCHHHHHHHHHHhCHHHHHHhCcccccc
Confidence            98532           257899999999999999999999864       24568889999999999988765 889999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++  .++|+|+||||++.++.+|
T Consensus       464 ~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D  537 (588)
T PRK13657        464 VVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNAD  537 (588)
T ss_pred             hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCC
Confidence            865 7889999999999999999999999999999999999999999998876  3799999999999887664

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.2e-43  Score=383.73  Aligned_cols=250  Identities=16%  Similarity=0.209  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400          6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (298)
                      +++.+...++....+++.++..+.+++++.++.+|+.++++..++.+...       ....  ... ......+.|+|+|
T Consensus      1101 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~-------~~~~--~~~-~~~~~~g~I~f~n 1170 (1466)
T PTZ00265       1101 DFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRD-------NGGI--RIK-NKNDIKGKIEIMD 1170 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC-------Cccc--ccc-cCCCCCceEEEEE
Confidence            34444333444445677888888999999999999999987543221100       0000  000 0011234699999


Q ss_pred             eeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc----
Q psy11400         86 ITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL----  156 (298)
Q Consensus        86 v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~----  156 (298)
                      |+|+||++. .+       +|+|+||+|++|+++|||        |+|  ||  |+++       |    .|+|+|    
T Consensus      1171 VsF~Y~~~~~~~-------vL~~lsl~i~~G~~vAIV--------G~SGsGKSTl~~L-------L----~r~ydp~~~~ 1224 (1466)
T PTZ00265       1171 VNFRYISRPNVP-------IYKDLTFSCDSKKTTAIV--------GETGSGKSTVMSL-------L----MRFYDLKNDH 1224 (1466)
T ss_pred             EEEECCCCCCCc-------cccCeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhCCCcccc
Confidence            999998532 22       999999999999999999        999  99  9999       6    777776    


Q ss_pred             --------------------------------------------------CCceeec-----------cCCCcEEEEcCc
Q psy11400        157 --------------------------------------------------FGGTVTK-----------PPRGKLFYVPQR  175 (298)
Q Consensus       157 --------------------------------------------------~~G~i~~-----------~~r~~i~~v~Q~  175 (298)
                                                                        ++|+|..           ..|++|+||||+
T Consensus      1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe 1304 (1466)
T PTZ00265       1225 HIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE 1304 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC
Confidence                                                              5888853           247889999999


Q ss_pred             CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCC
Q psy11400        176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRP  253 (298)
Q Consensus       176 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P  253 (298)
                      |++|++||+|||.|+.       +..+++++.++++.+++++++.. |+||||.++ .+.+||||||||++|||||+++|
T Consensus      1305 p~LF~gTIreNI~~g~-------~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265       1305 PMLFNMSIYENIKFGK-------EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred             CccccccHHHHHhcCC-------CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999974       24678899999999999998765 899999987 78899999999999999999999


Q ss_pred             CEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcchhhhcC
Q psy11400        254 QFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       254 ~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~~~~~~  298 (298)
                      +|||||||||+||+++++.+.+.+.+.    ++|+|+||||+++++..|
T Consensus      1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD 1426 (1466)
T PTZ00265       1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSD 1426 (1466)
T ss_pred             CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCC
Confidence            999999999999999999999888763    799999999999988754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.9e-43  Score=351.43  Aligned_cols=233  Identities=21%  Similarity=0.255  Sum_probs=193.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCCCC
Q psy11400         18 AEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGF   97 (298)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~   97 (298)
                      ..++..+...+..+++..++.+|+.++++..++....              ... ......+.++|+||+|+|+++..+ 
T Consensus       291 ~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--------------~~~-~~~~~~~~i~~~~v~f~y~~~~~~-  354 (574)
T PRK11160        291 FEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--------------TTS-TAAADQVSLTLNNVSFTYPDQPQP-  354 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--------------ccc-CCCCCCCeEEEEEEEEECCCCCCc-
Confidence            4566667777788889999999999988753321100              000 001123469999999999764332 


Q ss_pred             CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------
Q psy11400         98 DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------  164 (298)
Q Consensus        98 ~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------  164 (298)
                            +|+|+||++++|++++|+        |||  ||  |+++       +    .|+|+|++|+|...         
T Consensus       355 ------il~~i~~~i~~G~~~aiv--------G~sGsGKSTL~~l-------l----~g~~~p~~G~I~i~g~~i~~~~~  409 (574)
T PRK11160        355 ------VLKGLSLQIKAGEKVALL--------GRTGCGKSTLLQL-------L----TRAWDPQQGEILLNGQPIADYSE  409 (574)
T ss_pred             ------ceecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCceEEECCEEhhhCCH
Confidence                  999999999999999999        999  99  9999       8    99999999998632         


Q ss_pred             --CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc-cCCCCChhHHH
Q psy11400        165 --PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD-WIDVLSGGEKQ  241 (298)
Q Consensus       165 --~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~-~~~~LSgGqkQ  241 (298)
                        .|++|+||||+|++|++|++||+.++.       +..+++++.++++.+++++++++|+|+||..+ ++.+|||||||
T Consensus       410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-------~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrq  482 (574)
T PRK11160        410 AALRQAISVVSQRVHLFSATLRDNLLLAA-------PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQR  482 (574)
T ss_pred             HHHHhheeEEcccchhhcccHHHHhhcCC-------CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHH
Confidence              367899999999999999999999875       24578899999999999987755999999876 78899999999


Q ss_pred             HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        242 RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       242 RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |++||||++++|+++|||||||+||+++++.+.+.+++  .++|+|+||||+++++..|
T Consensus       483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d  541 (574)
T PRK11160        483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFD  541 (574)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCC
Confidence            99999999999999999999999999999999998876  3899999999999887543

>KOG0057|consensus

Probab=100.00  E-value=4.1e-43  Score=336.07  Aligned_cols=244  Identities=20%  Similarity=0.271  Sum_probs=199.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++.-+..++.++..|+..+...|+++.++..-..-+....+...+....                ..++...++.|+|
T Consensus       291 vgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~----------------~~~i~~~~~~I~F  354 (591)
T KOG0057|consen  291 VGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA----------------ALPIELFGGSIEF  354 (591)
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc----------------cCCcccCCCcEEE
Confidence            345666677777778888888877777766655444444333333222210                0012233467999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++++        +|+++||+|++||++||+        |+|  ||  ++|+       |    .+++. ++|
T Consensus       355 ~dV~f~y~~k~~--------iL~gvsf~I~kGekVaIv--------G~nGsGKSTilr~-------L----lrF~d-~sG  406 (591)
T KOG0057|consen  355 DDVHFSYGPKRK--------VLKGVSFTIPKGEKVAIV--------GSNGSGKSTILRL-------L----LRFFD-YSG  406 (591)
T ss_pred             EeeEEEeCCCCc--------eecceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HHHhc-cCC
Confidence            999999976555        999999999999999999        999  99  9999       7    77777 888


Q ss_pred             eeec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|..           ..|+-||||||+..||++||.+||.|+.       ...+++++.++++.+++++...+ |+||+|
T Consensus       407 ~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T  479 (591)
T KOG0057|consen  407 SILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-------PSASDEEVVEACKRAGLHDVISRLPDGYQT  479 (591)
T ss_pred             cEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC-------CCcCHHHHHHHHHHcCcHHHHHhccccchh
Confidence            8753           2478899999999999999999999986       46788999999999999986655 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      .++ ++..|||||||||+||||++++|+|+++|||||+||.++|..+.+.+.+  .++|+|+|.||+++++++|
T Consensus       480 ~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~D  553 (591)
T KOG0057|consen  480 LVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFD  553 (591)
T ss_pred             hHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCC
Confidence            987 8899999999999999999999999999999999999999999999876  4899999999999998875

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=1.2e-42  Score=347.55  Aligned_cols=248  Identities=21%  Similarity=0.265  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400          5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL   84 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   84 (298)
                      +.+..+...+..+..|+..+...+.++.+...+.+|+.++++..++.....           . ... ......+.++++
T Consensus       275 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-----------~-~~~-~~~~~~~~i~~~  341 (576)
T TIGR02204       275 GTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA-----------H-PKT-LPVPLRGEIEFE  341 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC-----------C-Ccc-CCcCCCceEEEE
Confidence            456666667788899999999999999999999999999877533211000           0 000 000112469999


Q ss_pred             eeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         85 GITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        85 ~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      ||+|+|+.+. .+       +|+|+||++++||+++|+        |+|  ||  |+++       +    .|+|+|++|
T Consensus       342 ~v~f~y~~~~~~~-------iL~~inl~i~~Ge~i~Iv--------G~sGsGKSTLlkl-------L----~gl~~p~~G  395 (576)
T TIGR02204       342 QVNFAYPARPDQP-------ALDGLNLTVRPGETVALV--------GPSGAGKSTLFQL-------L----LRFYDPQSG  395 (576)
T ss_pred             EEEEECCCCCCCc-------cccceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCC
Confidence            9999997532 22       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .+++|+|+||+|++|++|++||+.++.       +..+++++.++++.+++.+++++ |.|+++
T Consensus       396 ~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-------~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t  468 (576)
T TIGR02204       396 RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-------PDATDEEVEAAARAAHAHEFISALPEGYDT  468 (576)
T ss_pred             EEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-------CCCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence            98532           256799999999999999999999875       23467889999999999988876 789999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++||||++++|+++|||||||+||+.+++.+.+.+++  .++|+|+||||++..+.+|
T Consensus       469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d  542 (576)
T TIGR02204       469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD  542 (576)
T ss_pred             eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence            865 7889999999999999999999999999999999999999999988876  3899999999999887654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.6e-42  Score=353.83  Aligned_cols=247  Identities=19%  Similarity=0.202  Sum_probs=208.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      +++++.+..+...+..|+..+...+..++++..+.+|+.++++..++....               .........+.+++
T Consensus       394 ~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---------------~~~~~~~~~~~i~~  458 (694)
T TIGR01846       394 PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA---------------GLAALPELRGAITF  458 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---------------CCCCCCCCCCeEEE
Confidence            456667777778889999999999999999999999999998754322100               00001112356999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..+       +++|+||+|++|++++|+        |+|  ||  |+++       +    .|+++|++|
T Consensus       459 ~~vsf~y~~~~~~-------il~~i~l~i~~G~~vaiv--------G~sGsGKSTL~~l-------l----~g~~~p~~G  512 (694)
T TIGR01846       459 ENIRFRYAPDSPE-------VLSNLNLDIKPGEFIGIV--------GPSGSGKSTLTKL-------L----QRLYTPQHG  512 (694)
T ss_pred             EEEEEEcCCCCcc-------ccccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCc
Confidence            9999999754333       899999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .|++|+||||++++|++|++||+.++.       +..+++++.++++.+++++++++ |.|+|+
T Consensus       513 ~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-------~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t  585 (694)
T TIGR01846       513 QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-------PGAPFEHVIHAAKLAGAHDFISELPQGYNT  585 (694)
T ss_pred             eEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-------CCCCHHHHHHHHHHcChHHHHHhCcCccCc
Confidence            98532           357899999999999999999999864       24578899999999999988765 889999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++  .++|+|+||||+++++..|
T Consensus       586 ~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d  659 (694)
T TIGR01846       586 EVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD  659 (694)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCC
Confidence            876 7789999999999999999999999999999999999999999998876  3799999999999886543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=3.8e-42  Score=337.57  Aligned_cols=252  Identities=29%  Similarity=0.476  Sum_probs=220.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceee---cCC
Q psy11400          3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIY---RNN   79 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   79 (298)
                      ..++++....++.++.++++|+++.|..++.+++...|+.++...++...........        +. .....   .+.
T Consensus       321 ~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~--------~~-~~~~~~~~~~~  391 (604)
T COG4178         321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPAR--------TG-RRIDFDDNADH  391 (604)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCc--------cc-ccccccccccc
Confidence            3578899999999999999999999999999999999999999988744321100000        00 01111   146


Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++..|+++.        .+++++|++++|+.+.|.        |+|  ||  |+|.       +    +|+||
T Consensus       392 ~i~~~nl~l~~p~~~~--------ll~~l~~~v~~G~~llI~--------G~SG~GKTsLlRa-------i----aGLWP  444 (604)
T COG4178         392 GITLENLSLRTPDGQT--------LLSELNFEVRPGERLLIT--------GESGAGKTSLLRA-------L----AGLWP  444 (604)
T ss_pred             eeEEeeeeEECCCCCe--------eeccceeeeCCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCc
Confidence            7999999999998876        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL  235 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~L  235 (298)
                      ..+|+|..+....+.|+||.||++.||+||.++||....     ..+++++.++|.+++|+++.++   ++...+|...|
T Consensus       445 ~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~r---l~~~~~W~~vL  516 (604)
T COG4178         445 WGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAER---LDEEDRWDRVL  516 (604)
T ss_pred             cCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHH---HhccCcHhhhc
Confidence            999999988777799999999999999999999998532     3678999999999999999988   46667799999


Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |+||||||++||+++++|++++|||+|||||++++..+++++++  .+.|+|.|+||..+.++|+
T Consensus       517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~  581 (604)
T COG4178         517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHS  581 (604)
T ss_pred             ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHh
Confidence            99999999999999999999999999999999999999999998  6999999999999999885

>KOG0055|consensus

Probab=100.00  E-value=1.7e-43  Score=365.19  Aligned_cols=238  Identities=21%  Similarity=0.243  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400         15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG   94 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~   94 (298)
                      +....+++........+..+.++..+|.++++..+..+...             ..........+.++|+||+|+||.+.
T Consensus       298 l~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-------------~~~~~~~~~~g~ief~nV~FsYPsRp  364 (1228)
T KOG0055|consen  298 LIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-------------KGGRVLSSIKGEIEFRNVCFSYPSRP  364 (1228)
T ss_pred             hhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-------------ccCCcccccccceEEEEEEecCCCCC
Confidence            33445566666677778888999999999888765544211             00011122356899999999999764


Q ss_pred             -CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec------
Q psy11400         95 -LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------  163 (298)
Q Consensus        95 -~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------  163 (298)
                       .+       +|+|+||.|++|+.+|||        |+|  ||  ++.+       +    .++|.|++|+|..      
T Consensus       365 dv~-------Il~g~sl~i~~G~~valV--------G~SGsGKST~i~L-------L----~RfydP~~G~V~idG~di~  418 (1228)
T KOG0055|consen  365 DVK-------ILKGVSLKIPSGQTVALV--------GPSGSGKSTLIQL-------L----ARFYDPTSGEVLIDGEDIR  418 (1228)
T ss_pred             cch-------hhCCeEEEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhcCCCCceEEEcCccch
Confidence             22       999999999999999999        999  99  8888       7    9999999999863      


Q ss_pred             -----cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCC
Q psy11400        164 -----PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLS  236 (298)
Q Consensus       164 -----~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LS  236 (298)
                           ..|++||.|.|+|.+|..|++|||.|+.       ++++.+++.++++.++.++++.. |+||+|..+ .+.+||
T Consensus       419 ~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~-------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS  491 (1228)
T KOG0055|consen  419 NLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK-------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS  491 (1228)
T ss_pred             hcchHHHHhhcCeeeechhhhcccHHHHHhcCC-------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence                 2478999999999999999999999986       46788999999999999988765 899999977 778999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |||||||||||||+++|+||+|||||||||+++++.+.+.+++  .|+|.|+|+||+++++..|
T Consensus       492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD  555 (1228)
T KOG0055|consen  492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNAD  555 (1228)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccC
Confidence            9999999999999999999999999999999999999999876  4999999999999998754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=7.2e-42  Score=340.26  Aligned_cols=244  Identities=20%  Similarity=0.258  Sum_probs=203.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++++.++..++..+..|+.++...+..++++..+.+|+.++++..++....              .   .....++.+++
T Consensus       257 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--------------~---~~~~~~~~i~~  319 (544)
T TIGR01842       257 PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--------------M---PLPEPEGHLSV  319 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--------------C---CCCCCCCeEEE
Confidence            345666667777889999999999999999999999999998653321100              0   00111346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..+       +++|+||++++|++++|+        |+|  ||  |+++       +    .|+++|++|
T Consensus       320 ~~v~~~y~~~~~~-------~l~~~~~~i~~G~~~~iv--------G~sGsGKSTL~~l-------l----~g~~~~~~G  373 (544)
T TIGR01842       320 ENVTIVPPGGKKP-------TLRGISFRLQAGEALAII--------GPSGSGKSTLARL-------I----VGIWPPTSG  373 (544)
T ss_pred             EEEEEEcCCCCcc-------ccccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCc
Confidence            9999999754332       899999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .++.++||||+|++|++|++||+.+..       ...+++++.++++.+++++++++ |+|+++
T Consensus       374 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t  446 (544)
T TIGR01842       374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG-------ENADPEKIIEAAKLAGVHELILRLPDGYDT  446 (544)
T ss_pred             eEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC-------CCCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence            98532           256899999999999999999998643       23567889999999999888766 789999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~  297 (298)
                      ..+ ++.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++   .++|+|+||||++..+..
T Consensus       447 ~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~  520 (544)
T TIGR01842       447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV  520 (544)
T ss_pred             ccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence            866 7889999999999999999999999999999999999999999998765   379999999999877654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-42  Score=334.61  Aligned_cols=235  Identities=17%  Similarity=0.210  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceee-cCCcEEEeeeeEecCCCC
Q psy11400         16 KLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIY-RNNLRGRLGITLGLRSGG   94 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~~~~~~   94 (298)
                      .+..|+..+...|..-....++.+.+..+.+........              ........ .+..++.+|++|.||+++
T Consensus       269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~--------------~~~~~~~~~~~~ei~~~~l~~~y~~g~  334 (559)
T COG4988         269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGS--------------GEKAEVANEPPIEISLENLSFRYPDGK  334 (559)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC--------------ccccccccCCCceeeecceEEecCCCC
Confidence            456677777777776666677777777776654321110              00000011 112456679999999887


Q ss_pred             CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-------
Q psy11400         95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-------  163 (298)
Q Consensus        95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-------  163 (298)
                      +        +++|+||++++|+.++|+        |+|  ||  |+.+       +    .|+.+|++|+|..       
T Consensus       335 ~--------~l~~l~~t~~~g~~talv--------G~SGaGKSTLl~l-------L----~G~~~~~~G~I~vng~~l~~  387 (559)
T COG4988         335 P--------ALSDLNLTIKAGQLTALV--------GASGAGKSTLLNL-------L----LGFLAPTQGEIRVNGIDLRD  387 (559)
T ss_pred             c--------ccCCceeEecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCcCCCCCceEEECCccccc
Confidence            5        999999999999999999        999  99  9999       8    9999999999863       


Q ss_pred             ----cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc-cCCCCChh
Q psy11400        164 ----PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD-WIDVLSGG  238 (298)
Q Consensus       164 ----~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~-~~~~LSgG  238 (298)
                          .++++++||+|+|++|.+|++|||.++.       ...+++++.++++.+++.++++.|+|+|+..+ .+..||||
T Consensus       388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~-------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgG  460 (559)
T COG4988         388 LSPEAWRKQISWVSQNPYLFAGTIRENILLAR-------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGG  460 (559)
T ss_pred             cCHHHHHhHeeeeCCCCccccccHHHHhhccC-------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHH
Confidence                2478999999999999999999999975       35688999999999999999988999999876 78899999


Q ss_pred             HHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       239 qkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |+|||++||||++++++++||||||+||.++|+.+.+.+.+  +++|+|+||||+..++..|
T Consensus       461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D  522 (559)
T COG4988         461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADAD  522 (559)
T ss_pred             HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCC
Confidence            99999999999999999999999999999999999998876  4899999999999877543

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.3e-41  Score=340.19  Aligned_cols=246  Identities=19%  Similarity=0.185  Sum_probs=203.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+.++..++..+..|+..+...+..++....+.+|+.++++..++....              .  ......++.+++
T Consensus       253 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--------------~--~~~~~~~~~I~~  316 (569)
T PRK10789        253 LGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--------------S--EPVPEGRGELDV  316 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--------------C--CCCCCCCCcEEE
Confidence            345566666677788899999999999999999999999988643221100              0  000112346999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +|++|+|+.+..+       +|+|+||++++|++++|+        |||  ||  |+++       +    .|+++|++|
T Consensus       317 ~~v~~~y~~~~~~-------~l~~i~~~i~~G~~~~iv--------G~sGsGKSTLl~l-------l----~g~~~p~~G  370 (569)
T PRK10789        317 NIRQFTYPQTDHP-------ALENVNFTLKPGQMLGIC--------GPTGSGKSTLLSL-------I----QRHFDVSEG  370 (569)
T ss_pred             EEEEEECCCCCCc-------cccCeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCCCCC
Confidence            9999999754332       899999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .+++++|+||+|++|++|++||+.++.       ...+++++.++++.+++.+++.+ |+|+++
T Consensus       371 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-------~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t  443 (569)
T PRK10789        371 DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR-------PDATQQEIEHVARLASVHDDILRLPQGYDT  443 (569)
T ss_pred             EEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCC-------CCCCHHHHHHHHHHcCCHHHHHhCcCcccc
Confidence            98532           256799999999999999999999864       23567889999999999876654 899999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ..+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++  .++|+|+||||++.++..|
T Consensus       444 ~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d  517 (569)
T PRK10789        444 EVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEAS  517 (569)
T ss_pred             eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCC
Confidence            876 7789999999999999999999999999999999999999999998876  4899999999998876543

>KOG0056|consensus

Probab=100.00  E-value=5.3e-43  Score=330.72  Aligned_cols=248  Identities=21%  Similarity=0.230  Sum_probs=215.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEE
Q psy11400          3 NVLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRG   82 (298)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   82 (298)
                      -+++|.-+..-++++..|++|+.-.|+.+|....-++++.++++..++...              .+...+....++.|+
T Consensus       474 tVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--------------~P~a~pl~~~~G~i~  539 (790)
T KOG0056|consen  474 TVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--------------LPGAPPLKVTQGKIE  539 (790)
T ss_pred             cccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--------------CCCCCCccccCCeEE
Confidence            367888888889999999999999999999999999999999887655432              122223333467899


Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      |+||+|+|..+++        +|+|+||++.+|+.+|+|        |||  ||  ++|+       +    -++++..+
T Consensus       540 fsnvtF~Y~p~k~--------vl~disF~v~pGktvAlV--------G~SGaGKSTimRl-------L----fRffdv~s  592 (790)
T KOG0056|consen  540 FSNVTFAYDPGKP--------VLSDISFTVQPGKTVALV--------GPSGAGKSTIMRL-------L----FRFFDVNS  592 (790)
T ss_pred             EEEeEEecCCCCc--------eeecceEEecCCcEEEEE--------CCCCCchhHHHHH-------H----HHHhhccC
Confidence            9999999977776        999999999999999999        999  99  9999       7    78888888


Q ss_pred             ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcc
Q psy11400        159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWD  226 (298)
Q Consensus       159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d  226 (298)
                      |.|+.+           .|+.||.||||..+|+.|+..||.|+.       ..++++++.++.+.+++++- +.-|+||+
T Consensus       593 GsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak-------~~AsneevyaAAkAA~IHdrIl~fPegY~  665 (790)
T KOG0056|consen  593 GSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK-------PSASNEEVYAAAKAAQIHDRILQFPEGYN  665 (790)
T ss_pred             ceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC-------CCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence            988642           478899999999999999999999975       46788999999999999874 55699999


Q ss_pred             cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      +.++ ++-.|||||||||||||++++.|.+++|||+|||||..+|+.|...+.+  .++|.|+|+||+|++-+.|
T Consensus       666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD  740 (790)
T KOG0056|consen  666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNAD  740 (790)
T ss_pred             hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheeccc
Confidence            9887 8899999999999999999999999999999999999999999988876  4899999999999886543

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.1e-41  Score=370.46  Aligned_cols=239  Identities=19%  Similarity=0.201  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400         15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG   94 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~   94 (298)
                      ..+..++.+++..+.+++....+.+|+.++.+..++.....        ..   .......+..+.|+|+||+|+|+.+.
T Consensus      1180 ~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~--------~~---~~~~~~~p~~g~I~f~nVsf~Y~~~~ 1248 (1495)
T PLN03232       1180 LNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAII--------EN---NRPVSGWPSRGSIKFEDVHLRYRPGL 1248 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--------cC---CCCCCCCCCCCcEEEEEEEEEECCCC
Confidence            34566778888888888899999999999886543321100        00   00000012235699999999996543


Q ss_pred             CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------
Q psy11400         95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------  164 (298)
Q Consensus        95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------  164 (298)
                      ++       +|+|+||+|++||++||+        |+|  ||  |+++       |    .|+++|++|+|..+      
T Consensus      1249 ~~-------vL~~isl~I~~GekvaIV--------G~SGSGKSTL~~l-------L----~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232       1249 PP-------VLHGLSFFVSPSEKVGVV--------GRTGAGKSSMLNA-------L----FRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred             Cc-------ccccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCcCCCceEEECCEEhhh
Confidence            33       999999999999999999        999  99  9999       8    99999999998532      


Q ss_pred             -----CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400        165 -----PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG  237 (298)
Q Consensus       165 -----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg  237 (298)
                           .|++|+||||+|++|++|++|||.+..        ..+++++.++++.+++.++++. |+|+|+..+ .+.+|||
T Consensus      1303 i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1374 (1495)
T PLN03232       1303 FGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSV 1374 (1495)
T ss_pred             CCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCH
Confidence                 378899999999999999999998742        3578899999999999988765 889999876 7789999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |||||++|||||+++|+|||||||||+||+++++.|.+.+++  .++|+|+||||+++++.+|
T Consensus      1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232       1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence            999999999999999999999999999999999999999886  3899999999999988764

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=4e-41  Score=337.55  Aligned_cols=246  Identities=20%  Similarity=0.214  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400          5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL   84 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   84 (298)
                      +.+..+...+..+..|+..+...+.+++....+.+|+.++++..++....              ..........+.++++
T Consensus       273 g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~  338 (585)
T TIGR01192       273 GEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP--------------ADAPELPNVKGAVEFR  338 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC--------------ccCCCCCCCCCeEEEE
Confidence            44555566666778888888888888888888888988877643221100              0000001123469999


Q ss_pred             eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400         85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT  160 (298)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~  160 (298)
                      ||+|+|+++..        +++|+||++++|++++|+        |||  ||  |+++       +    .|+++|++|+
T Consensus       339 ~v~~~y~~~~~--------~l~~i~~~i~~G~~~~iv--------G~sGsGKSTL~~l-------l----~g~~~~~~G~  391 (585)
T TIGR01192       339 HITFEFANSSQ--------GVFDVSFEAKAGQTVAIV--------GPTGAGKTTLINL-------L----QRVYDPTVGQ  391 (585)
T ss_pred             EEEEECCCCCc--------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----ccCCCCCCCE
Confidence            99999975444        899999999999999999        999  99  9999       8    9999999999


Q ss_pred             eecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh-hcCCcccc
Q psy11400        161 VTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN-REKGWDTV  228 (298)
Q Consensus       161 i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~d~~  228 (298)
                      |...           .++.++||||+|++|++|++||+.++.       +..+++++.++++.+++.+++. .|+|+++.
T Consensus       392 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-------~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~  464 (585)
T TIGR01192       392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-------EGATDEEVYEAAKAAAAHDFILKRSNGYDTL  464 (585)
T ss_pred             EEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhccccccch
Confidence            8532           356899999999999999999999864       2346788899999999988765 48899997


Q ss_pred             cc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        229 AD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       229 ~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      .+ ++.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++  .++|+|+||||++.++.+|
T Consensus       465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d  537 (585)
T TIGR01192       465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNAD  537 (585)
T ss_pred             hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCC
Confidence            65 7889999999999999999999999999999999999999999998875  3899999999999886543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2e-41  Score=369.33  Aligned_cols=239  Identities=20%  Similarity=0.190  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400         15 VKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG   94 (298)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~   94 (298)
                      ..+..++.+++..+.++.....+.+|+.++++..++.....      . .    ......-+.++.|+|+||+|+|+++.
T Consensus      1183 ~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~------~-~----~~~~~~wp~~g~I~f~nVsf~Y~~~~ 1251 (1622)
T PLN03130       1183 LNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVI------E-N----NRPPPGWPSSGSIKFEDVVLRYRPEL 1251 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccc------c-C----CCCCCCCCCCCcEEEEEEEEEeCCCC
Confidence            34556666677777777888888899888875433221000      0 0    00000012245799999999996543


Q ss_pred             CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------
Q psy11400         95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------  164 (298)
Q Consensus        95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------  164 (298)
                      ++       +|+|+||+|++||++||+        |+|  ||  |+++       |    .|+++|++|+|..+      
T Consensus      1252 ~~-------VL~~is~~I~~GekVaIV--------GrSGSGKSTLl~l-------L----~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130       1252 PP-------VLHGLSFEISPSEKVGIV--------GRTGAGKSSMLNA-------L----FRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred             Cc-------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCcCCCCCceEEECCEeccc
Confidence            33       999999999999999999        999  99  9999       8    99999999998632      


Q ss_pred             -----CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400        165 -----PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG  237 (298)
Q Consensus       165 -----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg  237 (298)
                           .|++|++|||+|.+|+||++|||.+..        ..+++++.++++.+++.++++. |+|+|+..+ .+.+|||
T Consensus      1306 i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130       1306 FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred             CCHHHHHhccEEECCCCccccccHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence                 378899999999999999999998753        3578899999999999988765 889999876 7789999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |||||++|||||+++|+|||||||||+||.++++.|.+.+++  .++|+|+|+||+++++.+|
T Consensus      1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~D 1440 (1622)
T PLN03130       1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1440 (1622)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCC
Confidence            999999999999999999999999999999999999999886  4899999999999998764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=2.7e-41  Score=367.94  Aligned_cols=245  Identities=18%  Similarity=0.114  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeE
Q psy11400          9 TMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITL   88 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~   88 (298)
                      .....+..+..++.+++..+.++.....+.+|+.++.+..++.....        ..   ......-+.++.|+|+||+|
T Consensus      1224 ~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~--------~~---~~~~~~wp~~g~I~f~nVsf 1292 (1522)
T TIGR00957      1224 LSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI--------QE---TAPPSGWPPRGRVEFRNYCL 1292 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--------cC---CCCCCCCCCCCcEEEEEEEE
Confidence            34444567788899999999999999999999999986543211000        00   00000002245799999999


Q ss_pred             ecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc
Q psy11400         89 GLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP  164 (298)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~  164 (298)
                      +|+.+..+       +|+|+||+|++||++||+        |+|  ||  |+++       |    .++++|++|+|..+
T Consensus      1293 ~Y~~~~~~-------vL~~is~~I~~GekiaIV--------GrTGsGKSTL~~l-------L----~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957      1293 RYREDLDL-------VLRHINVTIHGGEKVGIV--------GRTGAGKSSLTLG-------L----FRINESAEGEIIID 1346 (1522)
T ss_pred             EeCCCCcc-------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCccCCCCeEEEC
Confidence            99755333       999999999999999999        999  99  9998       8    99999999998632


Q ss_pred             -----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-c
Q psy11400        165 -----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-W  231 (298)
Q Consensus       165 -----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~  231 (298)
                                 .|++|++|||+|++|++|+++||....        ..+++++.++++.+++.+++.. |+|+|+.++ .
T Consensus      1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957      1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS--------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred             CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc--------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence                       378899999999999999999997321        3578899999999999988766 799999876 7


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      +.+||||||||++|||||+++|+|||||||||+||.++++.|.+.+++  .++|+|+||||++++..+|
T Consensus      1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~D 1487 (1522)
T TIGR00957      1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT 1487 (1522)
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence            789999999999999999999999999999999999999999999876  4899999999999988765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-42  Score=328.67  Aligned_cols=234  Identities=22%  Similarity=0.249  Sum_probs=191.3

Q ss_pred             HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC
Q psy11400         16 KLAEAIGRLV-LAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG   94 (298)
Q Consensus        16 ~~~~~~~~~~-~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~   94 (298)
                      ..+.++.-+. ..+.++.+...+..|+.++.+..++...               + .......+..++++||+|+||+.+
T Consensus       287 ~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~---------------~-~~~~~~~~~~l~~~~vsF~y~~~~  350 (573)
T COG4987         287 AALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF---------------P-DEQTATTGQALELRNVSFTYPGQQ  350 (573)
T ss_pred             HHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC---------------C-ccccCCccceeeeccceeecCCCc
Confidence            3344454455 5556677777777777776665433211               0 001111112689999999999776


Q ss_pred             CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------
Q psy11400         95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------  164 (298)
Q Consensus        95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------  164 (298)
                      ++       +|+|+||++++||++||+        |+|  ||  ++.+       +    .|.|+|++|+|+..      
T Consensus       351 ~~-------~L~~~~l~l~~GEkvAIl--------G~SGsGKSTllqL-------l----~~~~~~~~G~i~~~g~~~~~  404 (573)
T COG4987         351 TK-------ALKNFNLTLAQGEKVAIL--------GRSGSGKSTLLQL-------L----AGAWDPQQGSITLNGVEIAS  404 (573)
T ss_pred             cc-------hhhccceeecCCCeEEEE--------CCCCCCHHHHHHH-------H----HhccCCCCCeeeECCcChhh
Confidence            54       999999999999999999        999  99  8888       8    99999999998632      


Q ss_pred             -----CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400        165 -----PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG  237 (298)
Q Consensus       165 -----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg  237 (298)
                           .++.|++++|++.+|.+|+++|+....       ++.+++++.+++++++|++++.. |+|+++..+ .+..|||
T Consensus       405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSG  477 (573)
T COG4987         405 LDEQALRETISVLTQRVHLFSGTLRDNLRLAN-------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSG  477 (573)
T ss_pred             CChhhHHHHHhhhccchHHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCc
Confidence                 255799999999999999999999875       46789999999999999987754 889999876 6789999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |||||++|||+|+++.+++||||||.|||+.+|+++++.+.+  .|+|+|+||||+.-+.+.|
T Consensus       478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~d  540 (573)
T COG4987         478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD  540 (573)
T ss_pred             hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcC
Confidence            999999999999999999999999999999999999998876  4999999999998776654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-42  Score=297.06  Aligned_cols=180  Identities=24%  Similarity=0.275  Sum_probs=149.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||+++|.+  ..       +|++||++|++||+++|+        |||  ||  |+|+       +    .++.+
T Consensus         2 mi~i~~l~K~fg~--~~-------VLkgi~l~v~~Gevv~ii--------GpSGSGKSTlLRc-------l----N~LE~   53 (240)
T COG1126           2 MIEIKNLSKSFGD--KE-------VLKGISLSVEKGEVVVII--------GPSGSGKSTLLRC-------L----NGLEE   53 (240)
T ss_pred             eEEEEeeeEEeCC--eE-------EecCcceeEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HCCcC
Confidence            5899999999953  22       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...            .|+++|+|||+..||+ .|+.||+.++...-....+....+.+.++|+.+||.+..+. 
T Consensus        54 ~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-  132 (240)
T COG1126          54 PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-  132 (240)
T ss_pred             CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-
Confidence            999998642            2678999999999875 79999999864211000111224556788999999776654 


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~  296 (298)
                              +|.+|||||||||||||||+.+|+++++|||||||||+...++.+.++   +.|.|+|+|||.+..++.
T Consensus       133 --------yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~  201 (240)
T COG1126         133 --------YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE  201 (240)
T ss_pred             --------CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence                    578999999999999999999999999999999999998888777655   359999999999988763

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.7e-40  Score=361.44  Aligned_cols=256  Identities=17%  Similarity=0.151  Sum_probs=201.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------c--hhccc-------cCCCCCCCC
Q psy11400          9 TMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYV-------R--TMVTQ-------NGVDSLSEG   72 (298)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~-------~--~~~~~-------~~~~~~~~~   72 (298)
                      ........+..++.+++..+.++.....+.+|+.++++..++.+.....       +  ....+       .....+...
T Consensus      1221 ~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1300 (1560)
T PTZ00243       1221 LSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAA 1300 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccC
Confidence            3344456778889999999999999999999999998643221100000       0  00000       000000000


Q ss_pred             ceeecCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccc
Q psy11400         73 IFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGT  148 (298)
Q Consensus        73 ~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~  148 (298)
                      ...+..+.|+|+||+|+|+++.++       +|+|+||+|++||++||+        |+|  ||  |+++       +  
T Consensus      1301 ~~~~~~G~I~f~nVsf~Y~~~~~~-------vL~~vsf~I~~GekVaIV--------GrTGSGKSTLl~l-------L-- 1356 (1560)
T PTZ00243       1301 PHPVQAGSLVFEGVQMRYREGLPL-------VLRGVSFRIAPREKVGIV--------GRTGSGKSTLLLT-------F-- 1356 (1560)
T ss_pred             CCCCCCCeEEEEEEEEEeCCCCCc-------eeecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H--
Confidence            001123579999999999765443       999999999999999999        999  99  9998       8  


Q ss_pred             ccccccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        149 LRDQLWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       149 ~~~~l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                        .|+++|++|+|..+           .|++|+||||+|++|++||++||....        ..+++++.++++.+++.+
T Consensus      1357 --lrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--------~~sdeeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243       1357 --MRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--------EASSAEVWAALELVGLRE 1426 (1560)
T ss_pred             --hCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc--------CCCHHHHHHHHHHCCChH
Confidence              99999999998632           378899999999999999999996532        457889999999999998


Q ss_pred             hhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcC-CCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400        218 ILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHR-PQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS  292 (298)
Q Consensus       218 ~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~-P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~  292 (298)
                      ++.. |+|+|+..+ .+.+||||||||++|||||+++ |+|||||||||+||+++++.+.+.+++  .++|+|+||||++
T Consensus      1427 ~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243       1427 RVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred             HHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHH
Confidence            7765 899999876 7889999999999999999996 899999999999999999999998876  3899999999999


Q ss_pred             hhhhcC
Q psy11400        293 LWTHHE  298 (298)
Q Consensus       293 ~~~~~~  298 (298)
                      ++..+|
T Consensus      1507 ti~~~D 1512 (1560)
T PTZ00243       1507 TVAQYD 1512 (1560)
T ss_pred             HHHhCC
Confidence            998765

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=4.2e-40  Score=312.93  Aligned_cols=238  Identities=21%  Similarity=0.227  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEe
Q psy11400         10 MGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLG   89 (298)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~   89 (298)
                      -.=++.....|+-..+..|+++..+..+..|+.+++...+....     .|            ..+.-++.+.++++++.
T Consensus       281 ~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~m------------~LP~P~g~L~Ve~l~~~  343 (580)
T COG4618         281 GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----RM------------PLPAPQGALSVERLTAA  343 (580)
T ss_pred             HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----CC------------CCCCCCceeeEeeeeec
Confidence            33455667788999999999999999999999999987654321     11            11222467999999998


Q ss_pred             cCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-
Q psy11400         90 LRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-  164 (298)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-  164 (298)
                      -|..+.+       +++++||++.+|+.++|+        |||  ||  |.|+       +    .|+|+|.+|.|..+ 
T Consensus       344 PPg~~~p-------il~~isF~l~~G~~lgII--------GPSgSGKSTLaR~-------l----vG~w~p~~G~VRLDg  397 (580)
T COG4618         344 PPGQKKP-------ILKGISFALQAGEALGII--------GPSGSGKSTLARL-------L----VGIWPPTSGSVRLDG  397 (580)
T ss_pred             CCCCCCc-------ceecceeEecCCceEEEE--------CCCCccHHHHHHH-------H----HcccccCCCcEEecc
Confidence            7765544       999999999999999999        999  99  9999       8    99999999998642 


Q ss_pred             ----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400        165 ----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI  232 (298)
Q Consensus       165 ----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~  232 (298)
                                ..++|||+||+..+|.|||.|||+-..       ...+.+.+.++.+..+.++++-+ |+||||..+ -+
T Consensus       398 a~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~-------~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G  470 (580)
T COG4618         398 ADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG-------EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG  470 (580)
T ss_pred             hhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc-------ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCC
Confidence                      246899999999999999999997432       24677889999999999997755 999999987 66


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhhc
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~~  297 (298)
                      ..||||||||+++||||+.+|.+++||||-|+||.+.|..+.+.+.   +.|.|+|+||||++.....
T Consensus       471 ~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~  538 (580)
T COG4618         471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV  538 (580)
T ss_pred             CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence            8999999999999999999999999999999999999999887654   4699999999999987653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-40  Score=296.99  Aligned_cols=181  Identities=25%  Similarity=0.306  Sum_probs=154.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++|++|+|.+. +        +|+|+||+|++|++++|+        |||  ||  |+|+       +    .|+.+
T Consensus         4 ~i~v~nl~v~y~~~-~--------vl~~i~l~v~~G~~~~ii--------GPNGaGKSTLlK~-------i----LGll~   55 (254)
T COG1121           4 MIEVENLTVSYGNR-P--------VLEDISLSVEKGEITALI--------GPNGAGKSTLLKA-------I----LGLLK   55 (254)
T ss_pred             EEEEeeeEEEECCE-e--------eeeccEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence            58999999999644 4        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC--------CCcEEEEcCcCC---CCCCCHHHHHccCCcchh-hhh--cCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTKPP--------RGKLFYVPQRPY---MTLGTLRDQVIYPHTKED-MIQ--KGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~~--------r~~i~~v~Q~~~---l~~~tv~eni~~~~~~~~-~~~--~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |++|+|....        +.+||||||...   -|+.||+|-+.++..... ...  ...+.+++.++|+.+++.++.++
T Consensus        56 p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r  135 (254)
T COG1121          56 PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR  135 (254)
T ss_pred             CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC
Confidence            9999987421        357999999763   467899999988743221 110  11235789999999999998887


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~  297 (298)
                      +         ..+|||||+|||.|||||+++|++|+|||||+|+|+.++..+++++++   .|+||++||||++.+..|
T Consensus       136 ~---------i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~  205 (254)
T COG1121         136 Q---------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY  205 (254)
T ss_pred             c---------ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence            5         679999999999999999999999999999999999999999988765   499999999999987654

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-41  Score=304.47  Aligned_cols=184  Identities=23%  Similarity=0.267  Sum_probs=155.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|++++|++.|+....    ....+++|+||+|++||+++|+        |.|  ||  |+|+       +    .++..
T Consensus         1 mI~l~~vsK~~~~~~~----~~~~al~~vsL~I~~GeI~GII--------G~SGAGKSTLiR~-------i----N~Le~   57 (339)
T COG1135           1 MIELENVSKTFGQTGT----GTVTALDDVSLEIPKGEIFGII--------GYSGAGKSTLLRL-------I----NLLER   57 (339)
T ss_pred             CeEEEeeeeeeccCCC----CceeeeccceEEEcCCcEEEEE--------cCCCCcHHHHHHH-------H----hccCC
Confidence            5899999999975210    0112999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|..              ..|++||++||++.+++ .||.+|+.||...... .+....+++.++|+.+||.+..+
T Consensus        58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~-~k~ei~~RV~elLelVgL~dk~~  136 (339)
T COG1135          58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PKAEIKQRVAELLELVGLSDKAD  136 (339)
T ss_pred             CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC-CHHHHHHHHHHHHHHcCChhhhc
Confidence            99999853              23788999999999876 7999999999754321 11223467889999999987665


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +         ++.+|||||||||+|||||+.+|++|+.|||||||||++-+.|++++++    .|.||++|||.++.++.
T Consensus       137 ~---------yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~  207 (339)
T COG1135         137 R---------YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKR  207 (339)
T ss_pred             c---------CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH
Confidence            5         4789999999999999999999999999999999999999999988764    59999999999998874

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.8e-39  Score=351.72  Aligned_cols=243  Identities=17%  Similarity=0.135  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400          5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL   84 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   84 (298)
                      ....+...++..+..|+..+...+..+.++..+.+|+.++++..++....         .    .   ........++++
T Consensus       555 g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~---------~----~---~~~~~~~~I~~~  618 (1495)
T PLN03232        555 ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ---------N----P---PLQPGAPAISIK  618 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc---------c----C---CcCCCCCcEEEE
Confidence            44556666777888888889999999999999999999998754321100         0    0   000112369999


Q ss_pred             eeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         85 GITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        85 ~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      |++|+|+.. ..+       +|+|+||+|++|+.++|+        |||  ||  |+++       +    .|.++|.+|
T Consensus       619 ~vsF~y~~~~~~~-------vL~~inl~i~~Ge~vaIv--------G~sGSGKSTLl~l-------L----lG~~~~~~G  672 (1495)
T PLN03232        619 NGYFSWDSKTSKP-------TLSDINLEIPVGSLVAIV--------GGTGEGKTSLISA-------M----LGELSHAET  672 (1495)
T ss_pred             eeEEEcCCCCCCc-------eeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCcccCC
Confidence            999999753 222       899999999999999999        999  99  9999       8    999999998


Q ss_pred             eeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400        160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG  237 (298)
Q Consensus       160 ~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg  237 (298)
                      .+. ..+++|+||+|+|++|++||+|||.|+.        ..+++++.++++.+++.+.++. |+|++|.++ .+.+|||
T Consensus       673 ~i~-~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG  743 (1495)
T PLN03232        673 SSV-VIRGSVAYVPQVSWIFNATVRENILFGS--------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG  743 (1495)
T ss_pred             CEE-EecCcEEEEcCccccccccHHHHhhcCC--------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH
Confidence            764 3567899999999999999999999975        2467789999999999876654 899999876 7889999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH-HHh--cCcEEEEEecCcchhhhcC
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-CRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~-l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ||||||+||||++++|+++||||||||||+.+++++.+. ++.  .++|+|+|||+++.++..|
T Consensus       744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD  807 (1495)
T PLN03232        744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMD  807 (1495)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCC
Confidence            999999999999999999999999999999999988764 343  4899999999999877653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-40  Score=291.24  Aligned_cols=178  Identities=24%  Similarity=0.226  Sum_probs=150.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+.+++|++.|.. ..        +|+|+||+|.+||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~i~~v~~~f~~-~~--------vl~~i~L~v~~GEfvsil--------GpSGcGKSTLLri-------i----AGL~~   54 (248)
T COG1116           3 LLEIEGVSKSFGG-VE--------VLEDINLSVEKGEFVAIL--------GPSGCGKSTLLRL-------I----AGLEK   54 (248)
T ss_pred             eEEEEeeEEEeCc-eE--------EeccceeEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5789999999964 33        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400        156 LFGGTVTKP------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV  228 (298)
Q Consensus       156 ~~~G~i~~~------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~  228 (298)
                      |++|+|...      +...++||||++.++ ..|++||+.++...... ......+.+.++++.+||..+.++       
T Consensus        55 p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~-~~~e~~~~a~~~L~~VgL~~~~~~-------  126 (248)
T COG1116          55 PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK-SKAEARERAKELLELVGLAGFEDK-------  126 (248)
T ss_pred             CCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc-chHhHHHHHHHHHHHcCCcchhhc-------
Confidence            999998642      356799999999876 57999999998743211 112234578899999999887766       


Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchhh
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~~  295 (298)
                        |+.+|||||||||+|||||+.+|++|+||||++|||..++..+.+.    +++.++|+++|||+.+.+-
T Consensus       127 --~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv  195 (248)
T COG1116         127 --YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV  195 (248)
T ss_pred             --CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence              5899999999999999999999999999999999999988877665    4456899999999998654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=4e-40  Score=279.26  Aligned_cols=180  Identities=22%  Similarity=0.201  Sum_probs=153.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+|+||+++|+.+..        +|+|+||+|++||++-++        |||  ||  ++|+       +    .+...
T Consensus         1 mI~f~~V~k~Y~~g~~--------aL~~vs~~i~~Gef~fl~--------GpSGAGKSTllkL-------i----~~~e~   53 (223)
T COG2884           1 MIRFENVSKAYPGGRE--------ALRDVSFHIPKGEFVFLT--------GPSGAGKSTLLKL-------I----YGEER   53 (223)
T ss_pred             CeeehhhhhhcCCCch--------hhhCceEeecCceEEEEE--------CCCCCCHHHHHHH-------H----Hhhhc
Confidence            5899999999998854        999999999999999999        999  99  9999       7    88888


Q ss_pred             cCCceeec--------------cCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTK--------------PPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |+.|+|..              ..|++||+||||.-+ ...|++||++||....... +..-.+++.++|+.+||.+-.+
T Consensus        54 pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~-~~~i~~rV~~~L~~VgL~~k~~  132 (223)
T COG2884          54 PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP-PREIRRRVSEVLDLVGLKHKAR  132 (223)
T ss_pred             CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC-HHHHHHHHHHHHHHhccchhhh
Confidence            99999852              137899999999875 5679999999987543211 1122467889999999987554


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      .         .+.+||||||||++||||++++|++||.||||.+|||.....|++++.+   .|.||++.||+.+++..
T Consensus       133 ~---------lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~  202 (223)
T COG2884         133 A---------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR  202 (223)
T ss_pred             c---------CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence            4         3789999999999999999999999999999999999999999888765   59999999999998764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=6.7e-39  Score=348.43  Aligned_cols=250  Identities=17%  Similarity=0.161  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccc-hhcccc--CCCCCCCCceeecCCcEEEeeeeEec
Q psy11400         14 LVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVR-TMVTQN--GVDSLSEGIFIYRNNLRGRLGITLGL   90 (298)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~i~~~~v~~~~   90 (298)
                      +..+..++.+++..+.++.....+.+|+.++.+..++........ ......  ..........-+..+.|+|+||+|+|
T Consensus      1148 ~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y 1227 (1490)
T TIGR01271      1148 AMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKY 1227 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEe
Confidence            456677788888888888898999999999886543321100000 000000  00000000001224579999999999


Q ss_pred             CCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---
Q psy11400         91 RSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---  163 (298)
Q Consensus        91 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---  163 (298)
                      +.+.++       +|+|+||+|++||++||+        |+|  ||  |+++       |    .|+++ .+|+|..   
T Consensus      1228 ~~~~~~-------vL~~is~~I~~GekvaIv--------GrSGsGKSTLl~l-------L----~rl~~-~~G~I~IdG~ 1280 (1490)
T TIGR01271      1228 TEAGRA-------VLQDLSFSVEGGQRVGLL--------GRTGSGKSTLLSA-------L----LRLLS-TEGEIQIDGV 1280 (1490)
T ss_pred             CCCCcc-------eeeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhhcC-CCcEEEECCE
Confidence            754433       999999999999999999        999  99  8888       7    88886 7899853   


Q ss_pred             --------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCC
Q psy11400        164 --------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WID  233 (298)
Q Consensus       164 --------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~  233 (298)
                              ..|++|+||||+|++|+||+|+||....        ..+++++.++++.+++.+++.. |+|+|+..+ .+.
T Consensus      1281 di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~ 1352 (1490)
T TIGR01271      1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352 (1490)
T ss_pred             EcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCC
Confidence                    2478899999999999999999996421        3578899999999999987755 789999876 678


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      +||||||||++|||||+++|+|||||||||+||.+++..|.+.+++  .++|+|+||||++++..+|
T Consensus      1353 nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~D 1419 (1490)
T TIGR01271      1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQ 1419 (1490)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence            9999999999999999999999999999999999999999999886  3899999999999988764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=7e-40  Score=288.70  Aligned_cols=184  Identities=24%  Similarity=0.218  Sum_probs=150.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|..+..     ...+|+++||+|++||+++|+        |||  ||  |+++       +    +++..|
T Consensus         2 i~~~~v~k~y~~~~~-----~~~~L~~v~l~i~~Ge~vaI~--------GpSGSGKSTLLni-------i----g~ld~p   57 (226)
T COG1136           2 IELKNVSKIYGLGGE-----KVEALKDVNLEIEAGEFVAIV--------GPSGSGKSTLLNL-------L----GGLDKP   57 (226)
T ss_pred             cEEeeeEEEeccCCc-----ceEecccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCC
Confidence            578999999965431     013999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeec---------------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        157 FGGTVTK---------------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       157 ~~G~i~~---------------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      ++|.+..               ..+++||||||+..|. ..|+.||+.+|....... .....+.+.++++.+++.+...
T Consensus        58 t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~-~~~~~~~~~~l~~~lgl~~~~~  136 (226)
T COG1136          58 TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS-AGRRKRAAEELLEVLGLEDRLL  136 (226)
T ss_pred             CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC-hhHHHHHHHHHHHhcCChhhhc
Confidence            9999642               1356799999999875 579999999764221110 0122456778888999986554


Q ss_pred             -hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        221 -REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 -~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                       +         ++.+|||||||||||||||+.+|++++.||||++||.++.+.+++++++    .|+|+|+||||+.++.
T Consensus       137 ~~---------~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~  207 (226)
T COG1136         137 KK---------KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK  207 (226)
T ss_pred             cC---------CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence             3         3789999999999999999999999999999999999999999888765    4889999999999887


Q ss_pred             hcC
Q psy11400        296 HHE  298 (298)
Q Consensus       296 ~~~  298 (298)
                      +.+
T Consensus       208 ~~d  210 (226)
T COG1136         208 YAD  210 (226)
T ss_pred             hCC
Confidence            653

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=9.4e-39  Score=348.52  Aligned_cols=241  Identities=19%  Similarity=0.148  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400          6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (298)
                      ..++...++..+..|+..+...+..+.++..+..|+.++++..+.....         +    +   ........|+++|
T Consensus       556 ~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~---------~----~---~~~~~~~~I~~~n  619 (1622)
T PLN03130        556 RAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP---------N----P---PLEPGLPAISIKN  619 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc---------C----C---cccCCCCceEEEe
Confidence            3445555667777888888888899999999999999998643221100         0    0   0001123599999


Q ss_pred             eeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC-c
Q psy11400         86 ITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG-G  159 (298)
Q Consensus        86 v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~-G  159 (298)
                      ++|+|+.. ..+       +|+|+||+|++|+.++|+        |||  ||  |+++       +    .|.++|.+ |
T Consensus       620 vsf~y~~~~~~~-------vL~~inl~i~~Ge~vaIv--------G~sGSGKSTLl~l-------L----lG~~~~~~GG  673 (1622)
T PLN03130        620 GYFSWDSKAERP-------TLSNINLDVPVGSLVAIV--------GSTGEGKTSLISA-------M----LGELPPRSDA  673 (1622)
T ss_pred             eEEEccCCCCCc-------eeeceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhhccCCCc
Confidence            99999743 222       899999999999999999        999  99  9999       8    99999999 8


Q ss_pred             eeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCCh
Q psy11400        160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSG  237 (298)
Q Consensus       160 ~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSg  237 (298)
                      +|.  .+++|+||+|+|++|++||+|||.|+.        ..++++..++++.+++.+.++. |+|++|.++ .+.+|||
T Consensus       674 ~I~--l~~~Iayv~Q~p~LfngTIreNI~fg~--------~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG  743 (1622)
T PLN03130        674 SVV--IRGTVAYVPQVSWIFNATVRDNILFGS--------PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG  743 (1622)
T ss_pred             eEE--EcCeEEEEcCccccCCCCHHHHHhCCC--------cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence            987  467899999999999999999999975        2457789999999999876655 899999876 7889999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH-HHh--cCcEEEEEecCcchhhhcC
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-CRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~-l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ||||||+||||++++|+++||||||||||+.+++++.+. ++.  .++|+|+|||+++.+++.|
T Consensus       744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD  807 (1622)
T PLN03130        744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVD  807 (1622)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCC
Confidence            999999999999999999999999999999999887653 443  4899999999999877654

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-39  Score=302.95  Aligned_cols=246  Identities=22%  Similarity=0.268  Sum_probs=212.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCcee-ecCCcEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFI-YRNNLRG   82 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~   82 (298)
                      +++|.....++.+++.|++.+...|+++.+...-++++.++++...+....+              ...... ...+.+.
T Consensus       199 vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p--------------da~~L~~~~~g~v~  264 (497)
T COG5265         199 VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP--------------DAPPLWPVRLGAVA  264 (497)
T ss_pred             chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC--------------CCccccccccceEE
Confidence            4677778888999999999999999999999999999999998876654321              111111 2345699


Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      |+||+|.|...++        +|+++||.+++|+.++++        |+|  ||  +.++       +    -++|++++
T Consensus       265 F~~V~F~y~~~r~--------iL~~isf~i~~g~tvAiV--------g~SG~gKsTI~rl-------l----fRFyD~~s  317 (497)
T COG5265         265 FINVSFAYDPRRP--------ILNGISFTIPLGKTVAIV--------GESGAGKSTILRL-------L----FRFYDVNS  317 (497)
T ss_pred             EEEEEeeccccch--------hhcCccccccCccEEEEE--------eCCCCcHHHHHHH-------H----HHHhCCcC
Confidence            9999999965555        999999999999999999        999  99  8888       7    78888899


Q ss_pred             ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400        159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD  226 (298)
Q Consensus       159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d  226 (298)
                      |.|..+           .|+-||.|||+..||+.|+..|+.|+.       +..+++++..+++.++++++... |+||+
T Consensus       318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-------~~at~eev~aaa~~aqi~~fi~~lP~gy~  390 (497)
T COG5265         318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-------PDATAEEVGAAAEAAQIHDFIQSLPEGYD  390 (497)
T ss_pred             ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-------ccccHHHHHHHHHHhhhhHHHHhCchhhh
Confidence            998642           367799999999999999999999985       45678899999999999988765 99999


Q ss_pred             cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      +.++ ++-.|||||||||+|||+++++|++++|||+||+||..+|+.|...+++  .|.|.++|+||++++-..
T Consensus       391 t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~a  464 (497)
T COG5265         391 TGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDA  464 (497)
T ss_pred             cccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCC
Confidence            9987 7889999999999999999999999999999999999999999999886  599999999999987543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.4e-38  Score=344.49  Aligned_cols=242  Identities=18%  Similarity=0.218  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC-
Q psy11400         16 KLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG-   94 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~-   94 (298)
                      ..+..++.+...+..++...++..|+.++++..++.+..              ...... .....|+|+||+|+|+... 
T Consensus       333 ~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~--------------~~~~~~-~~~~~I~~~nVsf~Y~~~~~  397 (1466)
T PTZ00265        333 ISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN--------------DDGKKL-KDIKKIQFKNVRFHYDTRKD  397 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--------------CCCccC-CCCCcEEEEEEEEEcCCCCC
Confidence            334445566667788889999999999998754432210              000000 1113599999999998532 


Q ss_pred             CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-c-----
Q psy11400         95 LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-P-----  164 (298)
Q Consensus        95 ~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-~-----  164 (298)
                      .+       +|+|+||+|++|++++|+        |||  ||  |+++       +    .|+++|++|+|.. .     
T Consensus       398 ~~-------vL~~isl~i~~Ge~vaIv--------G~SGsGKSTLl~l-------L----~gl~~p~~G~I~i~~g~~i~  451 (1466)
T PTZ00265        398 VE-------IYKDLNFTLTEGKTYAFV--------GESGCGKSTILKL-------I----ERLYDPTEGDIIINDSHNLK  451 (1466)
T ss_pred             Cc-------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhccCCCCeEEEeCCcchh
Confidence            22       999999999999999999        999  99  9999       8    9999999999864 1     


Q ss_pred             ------CCCcEEEEcCcCCCCCCCHHHHHccCCcch--------------------------------------------
Q psy11400        165 ------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKE--------------------------------------------  194 (298)
Q Consensus       165 ------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~--------------------------------------------  194 (298)
                            .|++|+||||+|.+|++|++|||.++....                                            
T Consensus       452 ~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (1466)
T PTZ00265        452 DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS  531 (1466)
T ss_pred             hCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccch
Confidence                  256799999999999999999999863100                                            


Q ss_pred             -hhh-----hcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCC
Q psy11400        195 -DMI-----QKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS  266 (298)
Q Consensus       195 -~~~-----~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD  266 (298)
                       +..     ....+++++.++++.+++++++.+ |+|++|..+ .+.+||||||||++|||||+++|++||||||||+||
T Consensus       532 ~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD  611 (1466)
T PTZ00265        532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD  611 (1466)
T ss_pred             hhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence             000     012456789999999999988755 899999876 788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----CcEEEEEecCcchhhhcC
Q psy11400        267 VDVEGSMYEYCREV----GITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       267 ~~~~~~i~~~l~~~----~~TiIiitH~l~~~~~~~  298 (298)
                      +.++..+.+.+++.    |+|+|+||||+++++..|
T Consensus       612 ~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD  647 (1466)
T PTZ00265        612 NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYAN  647 (1466)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCC
Confidence            99999999888753    799999999999887543

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=2.6e-38  Score=315.44  Aligned_cols=247  Identities=12%  Similarity=0.085  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEe
Q psy11400          5 LQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRL   84 (298)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   84 (298)
                      ..+..+.-.+..+..|+..+...+.+++...++.+|+.++++...+.....  .    ................+.++++
T Consensus       268 g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~i~~~  341 (555)
T TIGR01194       268 AAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL--E----LSDADNVLLLAHDKSVDSIELK  341 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--c----ccccccccccccCCCCceEEEE
Confidence            345555566677889999999999999999999999999987532211000  0    0000000000000112469999


Q ss_pred             eeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         85 GITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        85 ~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      ||+|+|++.   ..+       +|+|+||++++|++++|+        |||  ||  |+++       +    .|+++|+
T Consensus       342 ~v~f~y~~~~~~~~~-------~l~~vs~~i~~G~~~aiv--------G~sGsGKSTl~~l-------l----~g~~~p~  395 (555)
T TIGR01194       342 DVHMNPKAPEGSEGF-------ALGPIDLRIAQGDIVFIV--------GENGCGKSTLAKL-------F----CGLYIPQ  395 (555)
T ss_pred             EEEEEeCCCCCCcCc-------eeccceEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCC
Confidence            999999742   112       899999999999999999        999  99  9999       8    9999999


Q ss_pred             Cceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCc
Q psy11400        158 GGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGW  225 (298)
Q Consensus       158 ~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~  225 (298)
                      +|+|...           .+++++||+|++++|++|+++|. .         +..+++++.++++.++++++.+. |+|+
T Consensus       396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~  465 (555)
T TIGR01194       396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-G---------EHASLDNAQQYLQRLEIADKVKIEDGGF  465 (555)
T ss_pred             CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc-c---------cchhHHHHHHHHHHcCCchhhccccccc
Confidence            9998531           25679999999999999999984 1         12456778999999999987765 8888


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-H---hcCcEEEEEecCcchhhhc
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-R---EVGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~---~~~~TiIiitH~l~~~~~~  297 (298)
                      ++.    .+||||||||++||||++++|+++|||||||+||+++++.+.+.+ +   ..++|+|+||||+++++..
T Consensus       466 ~t~----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~  537 (555)
T TIGR01194       466 STT----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA  537 (555)
T ss_pred             CCc----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence            874    789999999999999999999999999999999999999987643 2   3489999999999877654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=9.9e-38  Score=310.78  Aligned_cols=225  Identities=16%  Similarity=0.127  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCC
Q psy11400         16 KLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGL   95 (298)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~   95 (298)
                      .+..|+..+...+.+++....+.+|+.++.+...+.+.               ..... ....+.++++||+|+|+++.+
T Consensus       274 ~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~---------------~~~~~-~~~~~~i~~~~v~f~y~~~~~  337 (547)
T PRK10522        274 FLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF---------------PRPQA-FPDWQTLELRNVTFAYQDNGF  337 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc---------------ccccc-cCcCceEEEEEEEEEeCCCCe
Confidence            45678888888888999999999999987643211100               00000 011236999999999985444


Q ss_pred             CCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------
Q psy11400         96 GFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------  163 (298)
Q Consensus        96 ~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------  163 (298)
                              +|+|+||+|++|++++|+        |||  ||  |+++       +    .|+++|++|+|..        
T Consensus       338 --------~l~~i~~~i~~G~~~aiv--------G~sGsGKSTL~~l-------l----~g~~~~~~G~i~~~g~~~~~~  390 (547)
T PRK10522        338 --------SVGPINLTIKRGELLFLI--------GGNGSGKSTLAML-------L----TGLYQPQSGEILLDGKPVTAE  390 (547)
T ss_pred             --------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCeEEEECCEECCCC
Confidence                    899999999999999999        999  99  9999       8    9999999999853        


Q ss_pred             ---cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHH
Q psy11400        164 ---PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEK  240 (298)
Q Consensus       164 ---~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqk  240 (298)
                         ..+++|+||||++++|++|+++|   +.        ..+++++.++++.+++.+..+.+++..    .+.+||||||
T Consensus       391 ~~~~~~~~i~~v~q~~~lf~~ti~~n---~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~----~G~~LSgGq~  455 (547)
T PRK10522        391 QPEDYRKLFSAVFTDFHLFDQLLGPE---GK--------PANPALVEKWLERLKMAHKLELEDGRI----SNLKLSKGQK  455 (547)
T ss_pred             CHHHHhhheEEEecChhHHHHhhccc---cC--------chHHHHHHHHHHHcCCchhhhccccCC----CCCCCCHHHH
Confidence               13578999999999999999988   11        234667888999999876554332211    2578999999


Q ss_pred             HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhhcC
Q psy11400        241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~~~  298 (298)
                      ||++||||++++|+++|||||||+||+++++.+.+.+.+    .++|+|+||||++..+..|
T Consensus       456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d  517 (547)
T PRK10522        456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD  517 (547)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence            999999999999999999999999999999998876642    3899999999998876543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.2e-39  Score=275.49  Aligned_cols=182  Identities=23%  Similarity=0.189  Sum_probs=143.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|.+ ..        +|+|||++|++++++|++        |||  ||  ++|+       +    .++.
T Consensus         6 ~~~~~~~l~~yYg~-~~--------aL~~i~l~i~~~~VTAlI--------GPSGcGKST~LR~-------l----NRmn   57 (253)
T COG1117           6 PAIEVRDLNLYYGD-KH--------ALKDINLDIPKNKVTALI--------GPSGCGKSTLLRC-------L----NRMN   57 (253)
T ss_pred             ceeEecceeEEECc-hh--------hhccCceeccCCceEEEE--------CCCCcCHHHHHHH-------H----Hhhc
Confidence            35889999999963 33        999999999999999999        999  99  8888       4    4444


Q ss_pred             ccCC-----ceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 PLFG-----GTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~~~~-----G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      ....     |+|..             ..|++||+|||.|..|+.||+||+.|+....+... ..-++.+++.|+.+.|.
T Consensus        58 dl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLW  136 (253)
T COG1117          58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALW  136 (253)
T ss_pred             ccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhH
Confidence            3333     55531             23789999999999999999999999875433222 22345678888888886


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~  294 (298)
                      +.++     |.+.+.+..||||||||+||||||+.+|++|+||||||||||.+..+|-+++.+  .+.|||+|||++.-+
T Consensus       137 dEVK-----DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA  211 (253)
T COG1117         137 DEVK-----DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA  211 (253)
T ss_pred             HHhH-----HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence            5442     122234668999999999999999999999999999999999887777776654  378999999998644

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=3.9e-38  Score=282.69  Aligned_cols=181  Identities=27%  Similarity=0.281  Sum_probs=152.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|++|.|+ +..        +++|+||+|++|++++|+        |||  ||  |+|+       +    .|+.+
T Consensus         2 ~L~~~~ls~~y~-~~~--------il~~ls~~i~~G~i~~ii--------GpNG~GKSTLLk~-------l----~g~l~   53 (258)
T COG1120           2 MLEVENLSFGYG-GKP--------ILDDLSFSIPKGEITGIL--------GPNGSGKSTLLKC-------L----AGLLK   53 (258)
T ss_pred             eeEEEEEEEEEC-Cee--------EEecceEEecCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            478999999996 344        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhc--C-CCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQK--G-ITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~--~-~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |.+|+|...           ..++++||||.+.. +..||+|-+.++..+......  . .+.+.+.++++.+++.++.+
T Consensus        54 p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~  133 (258)
T COG1120          54 PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD  133 (258)
T ss_pred             CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc
Confidence            999998642           24689999999865 456999999988654211111  1 12346888999999999988


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      ++         ..+||||||||+.|||||+++|++|+||||||+||...+-++++++++    .|+|+|+|.||++.+..
T Consensus       134 r~---------~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r  204 (258)
T COG1120         134 RP---------VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR  204 (258)
T ss_pred             Cc---------ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence            75         679999999999999999999999999999999999999888887764    48999999999997765


Q ss_pred             c
Q psy11400        297 H  297 (298)
Q Consensus       297 ~  297 (298)
                      |
T Consensus       205 y  205 (258)
T COG1120         205 Y  205 (258)
T ss_pred             h
Confidence            4

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-38  Score=279.22  Aligned_cols=178  Identities=21%  Similarity=0.197  Sum_probs=148.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+|+|||+.|. +..        +++|+||+|++||++.++        |||  ||  ++|+       +    .++.+
T Consensus         1 MI~~~nvsk~y~-~~~--------av~~v~l~I~~gef~vli--------GpSGsGKTTtLkM-------I----NrLie   52 (309)
T COG1125           1 MIEFENVSKRYG-NKK--------AVDDVNLTIEEGEFLVLI--------GPSGSGKTTTLKM-------I----NRLIE   52 (309)
T ss_pred             CceeeeeehhcC-Cce--------eeeeeeEEecCCeEEEEE--------CCCCCcHHHHHHH-------H----hcccC
Confidence            589999999996 333        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec-----------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch--hhhh
Q psy11400        156 LFGGTVTK-----------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY--ILNR  221 (298)
Q Consensus       156 ~~~G~i~~-----------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~  221 (298)
                      |++|+|..           ..|++||||-|..-+| +.||.|||.+-.....+ .+...+++++++++.++|+.  +.+|
T Consensus        53 pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w-~k~~i~~r~~ELl~lvgL~p~~~~~R  131 (309)
T COG1125          53 PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW-DKERIKKRADELLDLVGLDPSEYADR  131 (309)
T ss_pred             CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHhCCCHHHHhhc
Confidence            99999853           2478999999999876 57999999864322111 11223567889999999973  6666


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~l~~~~  295 (298)
                               ++++|||||||||.+||||+.+|++++||||++||||.++..+.+.++    +.++|+|+||||++.+-
T Consensus       132 ---------yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~  200 (309)
T COG1125         132 ---------YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL  200 (309)
T ss_pred             ---------CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH
Confidence                     478999999999999999999999999999999999998888776543    46999999999998653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=273.69  Aligned_cols=181  Identities=26%  Similarity=0.293  Sum_probs=151.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..     ++++++||||+|.+||+++|+        |+|  ||  |.++       +    +|+.+
T Consensus         3 ~l~v~nl~~~y~~~~~-----~~~~l~~VS~~i~~Ge~lgiv--------GeSGsGKSTL~r~-------l----~Gl~~   58 (252)
T COG1124           3 LLSVRNLSIVYGGGKF-----AFHALNNVSLEIERGETLGIV--------GESGSGKSTLARL-------L----AGLEK   58 (252)
T ss_pred             eEEEeceEEEecCCcc-----hhhhhcceeEEecCCCEEEEE--------cCCCCCHHHHHHH-------H----hcccC
Confidence            5899999999976542     224999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCC---CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYM---TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-IL  219 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~  219 (298)
                      |+.|+|...            .++.|.+|||||+-   +..||++.|.-|.....   ......++.++++.+|+.. ++
T Consensus        59 p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~~l  135 (252)
T COG1124          59 PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPSFL  135 (252)
T ss_pred             CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHHHH
Confidence            999998642            25679999999973   34699998877654311   1223456899999999974 55


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++         ++.+|||||+||+||||||..+|++||||||||+||...+..+++++.+    .+.|+|+||||++++.
T Consensus       136 ~R---------~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~  206 (252)
T COG1124         136 DR---------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVE  206 (252)
T ss_pred             hc---------CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHH
Confidence            55         4789999999999999999999999999999999999999999887654    5889999999999887


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      |
T Consensus       207 ~  207 (252)
T COG1124         207 H  207 (252)
T ss_pred             H
Confidence            6

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-38  Score=274.78  Aligned_cols=182  Identities=18%  Similarity=0.201  Sum_probs=153.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||+..||++..        +|+||||+|++||+++|+        |+|  ||  |+|+       +    .|+++
T Consensus         3 ~i~~~nl~k~yp~~~~--------aL~~Vnl~I~~GE~VaiI--------G~SGaGKSTLLR~-------l----ngl~d   55 (258)
T COG3638           3 MIEVKNLSKTYPGGHQ--------ALKDVNLEINQGEMVAII--------GPSGAGKSTLLRS-------L----NGLVD   55 (258)
T ss_pred             eEEEeeeeeecCCCce--------eeeeEeEEeCCCcEEEEE--------CCCCCcHHHHHHH-------H----hcccC
Confidence            6899999999997666        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec--------------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhh-----hh--cCCCHHHHHHHHHHc
Q psy11400        156 LFGGTVTK--------------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDM-----IQ--KGITDADLTEYLQKV  213 (298)
Q Consensus       156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~-----~~--~~~~~~~i~~~l~~~  213 (298)
                      |++|+|..              ..|++|||+||++.+. ..|+.+|++.+...+..     ..  ...+...+.++|+.+
T Consensus        56 ~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv  135 (258)
T COG3638          56 PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV  135 (258)
T ss_pred             CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999852              2367899999999886 46999999876432110     00  112345677889999


Q ss_pred             CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400        214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH  289 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH  289 (298)
                      |+.+..-.+         .++|||||||||+|||||+++|++++.|||+++|||.+.+.+++.+++    .|.|+|+.-|
T Consensus       136 gi~~~A~qr---------a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH  206 (258)
T COG3638         136 GILDKAYQR---------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH  206 (258)
T ss_pred             CcHHHHHHH---------hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEec
Confidence            997655332         579999999999999999999999999999999999999999988765    4899999999


Q ss_pred             Ccchhhhc
Q psy11400        290 RKSLWTHH  297 (298)
Q Consensus       290 ~l~~~~~~  297 (298)
                      ++++++.|
T Consensus       207 ~vdlA~~Y  214 (258)
T COG3638         207 QVDLAKKY  214 (258)
T ss_pred             hHHHHHHH
Confidence            99998765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.4e-38  Score=275.22  Aligned_cols=180  Identities=23%  Similarity=0.216  Sum_probs=146.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|++++|+++|.+ +.        +++|+||+|++||+++|+        |+|  ||  |+|+       +    .|++
T Consensus         7 ~~I~vr~v~~~fG~-~~--------Ild~v~l~V~~Gei~~ii--------GgSGsGKStlLr~-------I----~Gll   58 (263)
T COG1127           7 PLIEVRGVTKSFGD-RV--------ILDGVDLDVPRGEILAIL--------GGSGSGKSTLLRL-------I----LGLL   58 (263)
T ss_pred             ceEEEeeeeeecCC-EE--------EecCceeeecCCcEEEEE--------CCCCcCHHHHHHH-------H----hccC
Confidence            46999999999953 34        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-
Q psy11400        155 PLFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-  218 (298)
Q Consensus       155 ~~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-  218 (298)
                      +|++|+|..              ..++++|++||...||. .||+||+.||........+..-++-+...++.+||... 
T Consensus        59 ~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~  138 (263)
T COG1127          59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA  138 (263)
T ss_pred             CCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh
Confidence            999999853              13678999999999885 69999999987432211111112334456788888754 


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .++         .+++|||||++|++||||++.+|+++++|||||||||.+...+-+++++    .+.|+|+||||++.+
T Consensus       139 ~~~---------~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~  209 (263)
T COG1127         139 ADL---------YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL  209 (263)
T ss_pred             hhh---------CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH
Confidence            444         4789999999999999999999999999999999999877766665543    599999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       210 ~  210 (263)
T COG1127         210 L  210 (263)
T ss_pred             H
Confidence            4

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.4e-38  Score=279.49  Aligned_cols=180  Identities=25%  Similarity=0.291  Sum_probs=153.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++.++|++|.|+++..        +++|+||+|++|+.++|+        |+|  ||  |+++       +    +|+.+
T Consensus         3 ~i~~~~l~~~y~~~~~--------~l~~v~~~i~~Ge~~~i~--------G~nGsGKSTL~~~-------l----~GLl~   55 (235)
T COG1122           3 MIEAENLSFRYPGRKA--------ALKDVSLEIEKGERVLLI--------GPNGSGKSTLLKL-------L----NGLLK   55 (235)
T ss_pred             eEEEEEEEEEcCCCce--------eeeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCcCc
Confidence            5889999999986633        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec------------cCCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTK------------PPRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~------------~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |++|.|..            ..++++|||+|+|  .+|..||.|.+.|+........ ...++++.++++.+++.++.++
T Consensus        56 p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~-~e~~~rv~~~l~~vgl~~~~~r  134 (235)
T COG1122          56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR-EEIEERVAEALELVGLEELLDR  134 (235)
T ss_pred             CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH-HHHHHHHHHHHHHcCchhhccC
Confidence            99999842            2367899999999  4678899999999864221111 1124668899999999888766


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +         +.+|||||||||+||.+|+.+|++||||||||+||+...+.+.+.+++    .|+|+|++|||++.+..
T Consensus       135 ~---------p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~  204 (235)
T COG1122         135 P---------PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE  204 (235)
T ss_pred             C---------ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence            4         789999999999999999999999999999999999999999888765    26899999999987754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-37  Score=291.16  Aligned_cols=179  Identities=23%  Similarity=0.255  Sum_probs=150.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||+++|. +..        +++|+||+|++||+++++        |||  ||  ++|+       |    +|+.
T Consensus         4 ~~l~i~~v~k~yg-~~~--------av~~isl~i~~Gef~~lL--------GPSGcGKTTlLR~-------I----AGfe   55 (352)
T COG3842           4 PALEIRNVSKSFG-DFT--------AVDDISLDIKKGEFVTLL--------GPSGCGKTTLLRM-------I----AGFE   55 (352)
T ss_pred             ceEEEEeeeeecC-Cee--------EEecceeeecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            3589999999996 334        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeec---------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        155 PLFGGTVTK---------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       155 ~~~~G~i~~---------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      .|++|+|..         +.++.|++|||+..|| +.||+|||.||.............+++.++++.+++.++.++.  
T Consensus        56 ~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~--  133 (352)
T COG3842          56 QPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK--  133 (352)
T ss_pred             CCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC--
Confidence            999999853         2367899999999887 5799999999985211101111235789999999999888774  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLW  294 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~  294 (298)
                             +.+|||||||||||||||+.+|++|+||||.|+||...+..+...    .++.|+|.|+||||.+.+
T Consensus       134 -------p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA  200 (352)
T COG3842         134 -------PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA  200 (352)
T ss_pred             -------hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence                   789999999999999999999999999999999999877666544    445699999999998754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=6.9e-37  Score=270.08  Aligned_cols=180  Identities=21%  Similarity=0.219  Sum_probs=147.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+++..+       +++|+||++++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~~~~~-------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   54 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQP-------ALDNLNFHITKGEMVFLV--------GHSGAGKSTFLKL-------I----LGIEK   54 (216)
T ss_pred             CeEEEEEEEEecCCCee-------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            37899999999643222       899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...              .+++++|+||++.++. .|++||+.++...... ......+++.++++.+++.+..+
T Consensus        55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~  133 (216)
T TIGR00960        55 PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAH  133 (216)
T ss_pred             CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhh
Confidence            999997531              1346999999998775 6999999875311000 00112356788899999977665


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .+.|+|+|||+++.+.
T Consensus       134 ~~---------~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~  202 (216)
T TIGR00960       134 AL---------PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE  202 (216)
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            53         579999999999999999999999999999999999999999888765   3899999999998765

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.6e-37  Score=284.86  Aligned_cols=177  Identities=22%  Similarity=0.228  Sum_probs=149.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||++.|.+. .        +++|+||+|+.||+++++        |||  ||  ++|+       +    +|+.+
T Consensus         3 ~i~l~~v~K~yg~~-~--------~l~~i~l~i~~Gef~vll--------GPSGcGKSTlLr~-------I----AGLe~   54 (338)
T COG3839           3 ELELKNVRKSFGSF-E--------VLKDVNLDIEDGEFVVLL--------GPSGCGKSTLLRM-------I----AGLEE   54 (338)
T ss_pred             EEEEeeeEEEcCCc-e--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            58999999999532 2        799999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec---------cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTK---------PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~---------~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|..         +..++|++|||+..+| .+||+|||.||...... .+...++++.++++.+++.+++++.   
T Consensus        55 ~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~-~k~ei~~rV~eva~~L~l~~lL~r~---  130 (338)
T COG3839          55 PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV-PKAEIDKRVKEVAKLLGLEHLLNRK---  130 (338)
T ss_pred             CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC-chHHHHHHHHHHHHHcCChhHHhcC---
Confidence            99999853         3467899999999876 57999999999753211 1122357889999999999999874   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLW  294 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~  294 (298)
                            +.+|||||||||||||||+++|++++||||+|+||...+..+...    .++.+.|+|.||||...+
T Consensus       131 ------P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA  197 (338)
T COG3839         131 ------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA  197 (338)
T ss_pred             ------cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH
Confidence                  789999999999999999999999999999999999877665544    344689999999998654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9e-37  Score=287.12  Aligned_cols=181  Identities=25%  Similarity=0.270  Sum_probs=149.4

Q ss_pred             cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +|+++||++.|+.+  ...       +|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+
T Consensus         1 mI~~~~lsk~y~~~~~~~~-------~L~~vsl~i~~Gei~gIi--------G~sGaGKSTLlr~-------I----~gl   54 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQ-------ALNNVSLHVPAGQIYGVI--------GASGAGKSTLIRC-------V----NLL   54 (343)
T ss_pred             CEEEEEEEEEECCCCcceE-------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence            47899999999632  122       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        154 WPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      ++|++|+|...              .+++|+|+||++.++. .|++||+.++...... ......+++.++++.+++.+.
T Consensus        55 ~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~e~l~~vgL~~~  133 (343)
T TIGR02314        55 ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEIKRKVTELLALVGLGDK  133 (343)
T ss_pred             CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchh
Confidence            99999997521              2567999999998874 7999999886421100 011123467788999999877


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .+++         +.+|||||||||+|||||+.+|++||||||||+||+.+...+++++++    .|+|+|+|||+++.+
T Consensus       134 ~~~~---------~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v  204 (343)
T TIGR02314       134 HDSY---------PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV  204 (343)
T ss_pred             hhCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            6653         689999999999999999999999999999999999999999888765    389999999999987


Q ss_pred             hh
Q psy11400        295 TH  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       205 ~~  206 (343)
T TIGR02314       205 KR  206 (343)
T ss_pred             HH
Confidence            53

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=6.4e-36  Score=273.77  Aligned_cols=182  Identities=19%  Similarity=0.178  Sum_probs=156.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++|+++.|+.+..+       +|+|+||+|++||+++|+        |+|  ||  |+++       |    .|+++
T Consensus         2 ~i~~~nls~~~~~~~~~-------~l~~isl~I~~Ge~~~Iv--------G~nGsGKSTLl~~-------L----~gl~~   55 (275)
T cd03289           2 QMTVKDLTAKYTEGGNA-------VLENISFSISPGQRVGLL--------GRTGSGKSTLLSA-------F----LRLLN   55 (275)
T ss_pred             eEEEEEEEEEeCCCCCc-------ceeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhhcC
Confidence            48899999999754432       899999999999999999        999  99  9999       8    88887


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                       .+|+|...           .++.|+|+||+|.+|++|+++|+.+..        ...++++.++++.+++.++.++ +.
T Consensus        56 -~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~--------~~~~~~~~~~l~~~gL~~~~~~~p~  126 (275)
T cd03289          56 -TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG--------KWSDEEIWKVAEEVGLKSVIEQFPG  126 (275)
T ss_pred             -CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc--------CCCHHHHHHHHHHcCCHHHHHhCcc
Confidence             78987531           256799999999999999999996321        1345678899999999887766 67


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      ++++... .+..||||||||++||||++.+|+++||||||++||+.+...+.+.+++  .++|+|+||||++.+..
T Consensus       127 ~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~  202 (275)
T cd03289         127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE  202 (275)
T ss_pred             cccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence            7888754 6789999999999999999999999999999999999999999998875  37999999999987754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=2.4e-35  Score=321.41  Aligned_cols=236  Identities=19%  Similarity=0.173  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCcee-ecCCcEEEeeeeEec
Q psy11400         12 RMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFI-YRNNLRGRLGITLGL   90 (298)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~   90 (298)
                      .++..+..|+..+......+.++..+..|+.++++..++.....             . ..... .....++++|++|.|
T Consensus       581 ~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-------------~-~~~~~~~~~~~i~~~~~~~~~  646 (1522)
T TIGR00957       581 ALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI-------------E-RRTIKPGEGNSITVHNATFTW  646 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-------------c-ccccCCCCCCcEEEEEeEEEc
Confidence            44556678888999999999999999999999986543211000             0 00000 011369999999999


Q ss_pred             CCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCC
Q psy11400         91 RSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPR  166 (298)
Q Consensus        91 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r  166 (298)
                      +....+       +|+|+||+|++|+.++|+        |||  ||  |+++       +    .|+++|++|+|...  
T Consensus       647 ~~~~~~-------~l~~isl~i~~G~~v~Iv--------G~~GsGKSTLl~~-------l----~g~~~~~~G~i~~~--  698 (1522)
T TIGR00957       647 ARDLPP-------TLNGITFSIPEGALVAVV--------GQVGCGKSSLLSA-------L----LAEMDKVEGHVHMK--  698 (1522)
T ss_pred             CCCCCc-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCccCCcEEEEC--
Confidence            754332       999999999999999999        999  99  9999       8    99999999999764  


Q ss_pred             CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHH
Q psy11400        167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVA  244 (298)
Q Consensus       167 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRla  244 (298)
                      .+|+||||+|+++++|++|||.++..        .++++..++++.+++.+.++. |.|++|..+ .+.+||||||||++
T Consensus       699 g~i~yv~Q~~~l~~~Ti~eNI~~g~~--------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRia  770 (1522)
T TIGR00957       699 GSVAYVPQQAWIQNDSLRENILFGKA--------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVS  770 (1522)
T ss_pred             CEEEEEcCCccccCCcHHHHhhcCCc--------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHH
Confidence            47999999999999999999998742        234556777888888765554 778888765 78899999999999


Q ss_pred             HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-----cCcEEEEEecCcchhhhc
Q psy11400        245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-----VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-----~~~TiIiitH~l~~~~~~  297 (298)
                      ||||++++|++++||||||+||+.+++.+.+.+.+     .++|+|+|||+++.++..
T Consensus       771 LARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~  828 (1522)
T TIGR00957       771 LARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV  828 (1522)
T ss_pred             HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence            99999999999999999999999999999987742     379999999999887654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=4.2e-36  Score=263.19  Aligned_cols=173  Identities=21%  Similarity=0.241  Sum_probs=144.8

Q ss_pred             EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      +++|+++.|+++..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+.+|+
T Consensus         1 ~~~~l~~~~~~~~~--------~l~~v~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p~   53 (205)
T cd03226           1 RIENISFSYKKGTE--------ILDDLSLDLYAGEIIALT--------GKNGAGKTTLAKI-------L----AGLIKES   53 (205)
T ss_pred             CcccEEEEeCCcCc--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCC
Confidence            36789999964233        899999999999999999        999  99  9999       8    9999999


Q ss_pred             Cceeecc--------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        158 GGTVTKP--------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       158 ~G~i~~~--------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                      +|+|...        .+++++|+||++.  ++..|++||+.++...     .....+++.++++.+++.++.+++     
T Consensus        54 ~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~-----  123 (205)
T cd03226          54 SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-----LDAGNEQAETVLKDLDLYALKERH-----  123 (205)
T ss_pred             ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh-----cCccHHHHHHHHHHcCCchhcCCC-----
Confidence            9998532        2357999999983  5678999999875421     112235688899999997765543     


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                          +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+++.+.
T Consensus       124 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~  190 (205)
T cd03226         124 ----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA  190 (205)
T ss_pred             ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                679999999999999999999999999999999999999999888765   3899999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-36  Score=285.46  Aligned_cols=179  Identities=20%  Similarity=0.191  Sum_probs=148.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~i~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~ll--------G~sGsGKSTLLr~-------i----aGl~~   55 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQ--------VIKGIDLDVADGEFIVLV--------GPSGCGKSTLLRM-------V----AGLER   55 (356)
T ss_pred             EEEEEeEEEEeCCCCE--------EEeeeeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HCCCC
Confidence            4899999999953334        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .++.|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.++.   
T Consensus        56 p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~---  131 (356)
T PRK11650         56 ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM-PKAEIEERVAEAARILELEPLLDRK---  131 (356)
T ss_pred             CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhHhhCC---
Confidence            999998532         2467999999998875 6999999987531100 0011135678899999998877764   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++|+||||||+||+.+++.+.+.+++    .++|+|+|||+++.+.
T Consensus       132 ------~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~  199 (356)
T PRK11650        132 ------PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAM  199 (356)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                  679999999999999999999999999999999999999988876654    4899999999998654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=3.1e-36  Score=269.34  Aligned_cols=178  Identities=23%  Similarity=0.200  Sum_probs=144.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~p   52 (235)
T cd03261           1 IELRGLTKSFGG-RT--------VLKGVDLDVRRGEILAII--------GPSGSGKSTLLRL-------I----VGLLRP   52 (235)
T ss_pred             CeEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999953 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        157 FGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       157 ~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      ++|+|...              .++.|+|+||++.++. .|++||+.++.............+++.++++.+++.+..++
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  132 (235)
T cd03261          53 DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL  132 (235)
T ss_pred             CceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence            99997521              1356999999998876 59999998753110000000113456788999998766554


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +         +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++    .++|||+|||+++.+.
T Consensus       133 ~---------~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~  201 (235)
T cd03261         133 Y---------PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF  201 (235)
T ss_pred             C---------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            3         679999999999999999999999999999999999999999888765    3799999999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.2e-36  Score=266.00  Aligned_cols=178  Identities=25%  Similarity=0.263  Sum_probs=145.2

Q ss_pred             EEEeeeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         81 RGRLGITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        81 i~~~~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ++++||++.|+++   ..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+
T Consensus         1 l~~~~l~~~~~~~~~~~~--------il~~~s~~i~~G~~~~l~--------G~nGsGKSTLl~~-------i----~Gl   53 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQ--------ALKGVSLSIEKGEFVAIV--------GPSGSGKSTLLNI-------L----GGL   53 (218)
T ss_pred             CeEeeeEEEecCCCccee--------EEeeeEEEEcCCCEEEEE--------cCCCCCHHHHHHH-------H----hCC
Confidence            4689999999642   23        899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        154 WPLFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       154 ~~~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      ++|++|+|...               .++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+
T Consensus        54 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~  132 (218)
T cd03255          54 DRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGV-PKKERRERAEELLERVGLGD  132 (218)
T ss_pred             cCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCch
Confidence            99999998521               1346999999998876 4999999875321100 00012346788899999977


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL  293 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~  293 (298)
                      ..++.         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|+|||+++.
T Consensus       133 ~~~~~---------~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  203 (218)
T cd03255         133 RLNHY---------PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL  203 (218)
T ss_pred             hhhcC---------hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence            66553         679999999999999999999999999999999999999999887764    37899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       204 ~~  205 (218)
T cd03255         204 AE  205 (218)
T ss_pred             Hh
Confidence            64

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.6e-35  Score=264.95  Aligned_cols=182  Identities=21%  Similarity=0.285  Sum_probs=148.9

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+.+..+       +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~~~~l~~~~~~~~~~-------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   54 (237)
T cd03252           1 ITFEHVRFRYKPDGPV-------ILDNISLRIKPGEVVGIV--------GRSGSGKSTLTKL-------I----QRFYVP   54 (237)
T ss_pred             CEEEEEEEecCCCCcc-------ceeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCC
Confidence            4689999999643322       899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG  224 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g  224 (298)
                      ++|+|...           .++.++|+||++.++..|+.||+.++..       ......+.+.++..++.++++. +.+
T Consensus        55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~-------~~~~~~~~~~~~~~~~~~~l~~l~~~  127 (237)
T cd03252          55 ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADP-------GMSMERVIEAAKLAGAHDFISELPEG  127 (237)
T ss_pred             CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCC-------CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence            99998532           1456999999998888899999987532       1223445566666777666554 334


Q ss_pred             ccccc-ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        225 WDTVA-DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~-~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      +++.. ..+.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+++  .++|+|++||+++.+.
T Consensus       128 ~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~  201 (237)
T cd03252         128 YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK  201 (237)
T ss_pred             ccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence            55443 36789999999999999999999999999999999999999999988865  3799999999998764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=2e-35  Score=258.71  Aligned_cols=180  Identities=25%  Similarity=0.302  Sum_probs=149.7

Q ss_pred             EEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         81 RGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        81 i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ++++||++.|++..   ..       +++|+||+|++|++++|+        |||  ||  |+++       +    +|+
T Consensus         1 l~~~~l~~~~~~~~~~~~~-------il~~~s~~i~~G~~~~i~--------G~nG~GKSTLl~~-------i----~G~   54 (204)
T cd03250           1 ISVEDASFTWDSGEQETSF-------TLKDINLEVPKGELVAIV--------GPVGSGKSSLLSA-------L----LGE   54 (204)
T ss_pred             CEEeEEEEecCCCCccccc-------eeeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCc
Confidence            46899999996532   12       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-c
Q psy11400        154 WPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-W  231 (298)
Q Consensus       154 ~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~  231 (298)
                      ++|++|+|....  +|+|+||+|.+++.|++||+.++..        ...+...++++.+++.+.++. +.|+++..+ +
T Consensus        55 ~~~~~G~i~~~g--~i~~~~q~~~l~~~t~~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  124 (204)
T cd03250          55 LEKLSGSVSVPG--SIAYVSQEPWIQNGTIRENILFGKP--------FDEERYEKVIKACALEPDLEILPDGDLTEIGEK  124 (204)
T ss_pred             CCCCCCeEEEcC--EEEEEecCchhccCcHHHHhccCCC--------cCHHHHHHHHHHcCcHHHHHhccCcccceecCC
Confidence            999999997654  7999999999999999999998642        123445667777788766654 456666544 6


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH-HHHh---cCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE-YCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~-~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      +.+||+|||||++|||||+.+|+++||||||++||+...+.+.+ ++++   .+.|+|++||+++.+..
T Consensus       125 ~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~  193 (204)
T cd03250         125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH  193 (204)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence            78999999999999999999999999999999999999888876 3432   37999999999987654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=2.4e-35  Score=260.97  Aligned_cols=183  Identities=23%  Similarity=0.298  Sum_probs=155.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|+.+..+       +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~~~~~-------~l~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   55 (221)
T cd03244           2 DIEFKNVSLRYRPNLPP-------VLKNISFSIKPGEKVGIV--------GRTGSGKSSLLLA-------L----FRLVE   55 (221)
T ss_pred             cEEEEEEEEecCCCCcc-------cccceEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCCC
Confidence            47899999999754322       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                      |++|+|...           .++.++|+||++.++..|++||+.+..        ....+++.++++.+++.+.+++ +.
T Consensus        56 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~--------~~~~~~~~~~~~~~~l~~~~~~l~~  127 (221)
T cd03244          56 LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG--------EYSDEELWQALERVGLKEFVESLPG  127 (221)
T ss_pred             CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCC--------CCCHHHHHHHHHHhCcHHHHHhccc
Confidence            999998531           246799999999988889999997532        1235567888899999877665 66


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      |+++... ++..||+|||||++|||||+.+|+++||||||++||+.+++.+.+.+++  .+.|+|++||+++.+..
T Consensus       128 ~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  203 (221)
T cd03244         128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID  203 (221)
T ss_pred             ccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence            7777654 7889999999999999999999999999999999999999999998876  37899999999987653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=5.1e-36  Score=265.38  Aligned_cols=178  Identities=25%  Similarity=0.204  Sum_probs=145.6

Q ss_pred             EEEeeeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         81 RGRLGITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        81 i~~~~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ++++|+++.|++.   ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+
T Consensus         1 l~~~~l~~~~~~~~~~~~--------il~~vs~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl   53 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVT--------ALEDISLSVEEGEFVALV--------GPSGCGKSTLLRI-------I----AGL   53 (220)
T ss_pred             CeEEEEEEEcCCCCcceE--------EEeceeEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            4689999999642   23        899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        154 WPLFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       154 ~~~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|++|+|...      .++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+..+++    
T Consensus        54 ~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~----  128 (220)
T cd03293          54 ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAY----  128 (220)
T ss_pred             CCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCC----
Confidence            99999998642      2467999999998776 6999999865311000 0011235677889999997666553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++    .++|+|++||+++.+.
T Consensus       129 -----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~  196 (220)
T cd03293         129 -----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAV  196 (220)
T ss_pred             -----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence                 578999999999999999999999999999999999999999888764    3789999999998653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3.1e-35  Score=260.10  Aligned_cols=183  Identities=26%  Similarity=0.323  Sum_probs=152.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|+++...       +++|+||+|++|++++|+        |||  ||  |+++       +    .|+.+
T Consensus         2 ~l~~~~l~~~~~~~~~~-------~l~~i~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------i----~G~~~   55 (220)
T cd03245           2 RIEFRNVSFSYPNQEIP-------ALDNVSLTIRAGEKVAII--------GRVGSGKSTLLKL-------L----AGLYK   55 (220)
T ss_pred             eEEEEEEEEEcCCCCcc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcC
Confidence            37899999999643222       899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                      |++|+|...           .++.++|+||++.++..|+.||+.+...       .....++.++++.+++.+.+++ +.
T Consensus        56 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~  128 (220)
T cd03245          56 PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP-------LADDERILRAAELAGVTDFVNKHPN  128 (220)
T ss_pred             CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCC-------CCCHHHHHHHHHHcCcHHHHHhccc
Confidence            999998532           1346999999998887899999987532       1234567788899999877765 45


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      ++++... .+.+||||||||++||||++.+|+++||||||++||+.+...+.+.+++.  ++|+|++||+++.+.
T Consensus       129 ~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  203 (220)
T cd03245         129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD  203 (220)
T ss_pred             cccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence            6666543 56899999999999999999999999999999999999999999988763  479999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=5.4e-36  Score=263.89  Aligned_cols=179  Identities=23%  Similarity=0.254  Sum_probs=146.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~~~~--------il~~is~~i~~G~~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~   53 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVA--------ALHDVSLHIRKGEFLFLT--------GPSGAGKTTLLKL-------L----YGALT   53 (214)
T ss_pred             CEEEEeeeEEeCCCce--------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999953333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...              .++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.+..+
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~  132 (214)
T TIGR02673        54 PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKAD  132 (214)
T ss_pred             CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhh
Confidence            999997521              1357999999998775 699999986421100 000112356788899999876555


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++   .++|+|++||+++.+.
T Consensus       133 ~~---------~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~  201 (214)
T TIGR02673       133 AF---------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD  201 (214)
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            43         579999999999999999999999999999999999999999888765   4899999999998765

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=4.7e-36  Score=264.22  Aligned_cols=177  Identities=27%  Similarity=0.262  Sum_probs=144.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~p   52 (213)
T cd03259           1 LELKGLSKTYGS-VR--------ALDDLSLTVEPGEFLALL--------GPSGCGKTTLLRL-------I----AGLERP   52 (213)
T ss_pred             CeeeeeEEEeCC-ee--------eecceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...         .++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+..+++    
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~----  127 (213)
T cd03259          53 DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-PKAEIRARVRELLELVGLEGLLNRY----  127 (213)
T ss_pred             CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhcC----
Confidence            99998532         2357999999998764 6999999864311000 0011234577889999997766553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|+|||++||+++.+.
T Consensus       128 -----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  195 (213)
T cd03259         128 -----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL  195 (213)
T ss_pred             -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence                 578999999999999999999999999999999999999999888765    3899999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.9e-36  Score=266.16  Aligned_cols=181  Identities=23%  Similarity=0.241  Sum_probs=146.8

Q ss_pred             cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +++++||++.|+.+.  .+       +++|+||+|++|++++|+        |||  ||  |+++       +    +|+
T Consensus         5 ~l~~~~l~~~~~~~~~~~~-------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl   58 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTD-------VLHNVSFSIGEGEMMAIV--------GSSGSGKSTLLHL-------L----GGL   58 (233)
T ss_pred             eEEEEeEEEEcCCCCccee-------eEEeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence            589999999997432  22       899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        154 WPLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       154 ~~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      ++|++|+|....               ++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+
T Consensus        59 ~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~  137 (233)
T PRK11629         59 DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRALEMLAAVGLEH  137 (233)
T ss_pred             CCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCch
Confidence            999999975311               246999999998775 5999999864211000 00112346788899999976


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL  293 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~  293 (298)
                      ..++.         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|+|+|+|||+++.
T Consensus       138 ~~~~~---------~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~  208 (233)
T PRK11629        138 RANHR---------PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL  208 (233)
T ss_pred             hhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            65543         678999999999999999999999999999999999999999887764    37999999999987


Q ss_pred             hhh
Q psy11400        294 WTH  296 (298)
Q Consensus       294 ~~~  296 (298)
                      +..
T Consensus       209 ~~~  211 (233)
T PRK11629        209 AKR  211 (233)
T ss_pred             HHh
Confidence            654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.3e-35  Score=262.44  Aligned_cols=183  Identities=23%  Similarity=0.282  Sum_probs=152.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++...        +++|+||++++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~~~~--------~l~~isl~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   54 (229)
T cd03254           2 EIEFENVNFSYDEKKP--------VLKDINFSIKPGETVAIV--------GPTGAGKTTLINL-------L----MRFYD   54 (229)
T ss_pred             eEEEEEEEEecCCCCc--------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcC
Confidence            4789999999964334        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                      |++|+|...           .++.++|+||++.++..|++||+.++..       .....++.++++.+++.++.++ +.
T Consensus        55 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~  127 (229)
T cd03254          55 PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP-------NATDEEVIEAAKEAGAHDFIMKLPN  127 (229)
T ss_pred             CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCC-------CCCHHHHHHHHHHhChHHHHHhCcc
Confidence            999998532           2456999999998888899999987532       1234566777888888777665 34


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      |+++..+ ++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++  .++|+|++||+++.+..
T Consensus       128 ~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  203 (229)
T cd03254         128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN  203 (229)
T ss_pred             cccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence            5665543 6789999999999999999999999999999999999999999888765  37999999999987643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=7.9e-36  Score=262.78  Aligned_cols=177  Identities=28%  Similarity=0.365  Sum_probs=144.4

Q ss_pred             EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      +++||++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|+
T Consensus         1 ~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~p~   52 (213)
T cd03235           1 EVEDLTVSYGG-HP--------VLEDVSFEVKPGEFLAIV--------GPNGAGKSTLLKA-------I----LGLLKPT   52 (213)
T ss_pred             CcccceeEECC-EE--------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCCCC
Confidence            36789999963 33        899999999999999999        999  99  9999       8    9999999


Q ss_pred             CceeeccC------CCcEEEEcCcCCC---CCCCHHHHHccCCcchhhh---hcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        158 GGTVTKPP------RGKLFYVPQRPYM---TLGTLRDQVIYPHTKEDMI---QKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       158 ~G~i~~~~------r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      +|+|....      +++++|+||++.+   +..|++||+.++.......   ......+++.++++.+++.+..+++   
T Consensus        53 ~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---  129 (213)
T cd03235          53 SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ---  129 (213)
T ss_pred             CCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC---
Confidence            99986432      4679999999875   4579999998754211000   0011234678889999997666553   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .+.|+|++||+++.+.
T Consensus       130 ------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~  196 (213)
T cd03235         130 ------IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVL  196 (213)
T ss_pred             ------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                  679999999999999999999999999999999999999998887764   4789999999998764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=9.8e-36  Score=262.95  Aligned_cols=182  Identities=22%  Similarity=0.226  Sum_probs=146.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++...     ..++++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~v~~~~~~~~~-----~~~il~~~sl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (218)
T cd03266           1 MITADALTKRFRDVKK-----TVQAVDGVSFTVKPGEVTGLL--------GPNGAGKTTTLRM-------L----AGLLE   56 (218)
T ss_pred             CeEEEEEEEecCCCCc-----cceeecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence            3789999999964310     001899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .++.++|+||++.++. .|++||+.+....... ......+++.++++.+++.+..+++  
T Consensus        57 ~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~--  133 (218)
T cd03266          57 PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRR--  133 (218)
T ss_pred             CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhh--
Confidence            999998532          2457999999998876 5999999764211000 0011234677889999997766553  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                             +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .++|+|+|||+++.+.
T Consensus       134 -------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~  200 (218)
T cd03266         134 -------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE  200 (218)
T ss_pred             -------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                   679999999999999999999999999999999999999999888765   3799999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-36  Score=270.30  Aligned_cols=179  Identities=22%  Similarity=0.230  Sum_probs=150.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++|+++.|+. ..        +++||||+|+.||.+|+.        |||  ||  |+|+       +    +|+..
T Consensus         2 ~i~i~~~~~~~~~-~~--------a~~di~l~i~~Ge~vaLl--------GpSGaGKsTlLRi-------I----AGLe~   53 (345)
T COG1118           2 SIRINNVKKRFGA-FG--------ALDDISLDIKSGELVALL--------GPSGAGKSTLLRI-------I----AGLET   53 (345)
T ss_pred             ceeehhhhhhccc-cc--------ccccceeeecCCcEEEEE--------CCCCCcHHHHHHH-------H----hCcCC
Confidence            4788899888853 22        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhh-hhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDM-IQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |+.|.|...            ..++||||||+..+| .+||.+||.|+...... ......+.++.++|+.++|+.+.++
T Consensus        54 p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r  133 (345)
T COG1118          54 PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR  133 (345)
T ss_pred             CCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc
Confidence            999998531            246799999999876 58999999999754311 1112235678899999999988877


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      .         +.+||||||||||+||||+.+|++|+||||+++||...++.+.+.+++    .|.|+++||||.+.+.
T Consensus       134 y---------P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~  202 (345)
T COG1118         134 Y---------PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL  202 (345)
T ss_pred             C---------chhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH
Confidence            4         789999999999999999999999999999999999888877766654    5999999999998664

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-35  Score=271.55  Aligned_cols=179  Identities=21%  Similarity=0.243  Sum_probs=147.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|+.+..        +++|+||+|++||+++|+        |+|  ||  |+++       +    .|+++
T Consensus         4 ~l~~~~l~~~~~~~~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (274)
T PRK13647          4 IIEVEDLHFRYKDGTK--------ALKGLSLSIPEGSKTALL--------GPNGAGKSTLLLH-------L----NGIYL   56 (274)
T ss_pred             eEEEEEEEEEeCCCCe--------eeeeEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCC
Confidence            5899999999964334        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...           .++.|+|+||+|  .++..|+.+|+.++...... ......+++.++++.+++.+..+++
T Consensus        57 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~  135 (274)
T PRK13647         57 PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL-DKDEVERRVEEALKAVRMWDFRDKP  135 (274)
T ss_pred             CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHHHhcCC
Confidence            999998532           135699999998  46778999999875311000 0011134577889999997766553


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++   .|+|||++||+++.+.
T Consensus       136 ---------~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~  202 (274)
T PRK13647        136 ---------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA  202 (274)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                     679999999999999999999999999999999999999999888764   3899999999999764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=9.5e-36  Score=262.14  Aligned_cols=178  Identities=21%  Similarity=0.207  Sum_probs=145.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+++..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~~~~--------~l~~~sl~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   53 (214)
T cd03292           1 IEFINVTKTYPNGTA--------ALDGINISISAGEFVFLV--------GPSGAGKSTLLKL-------I----YKEELP   53 (214)
T ss_pred             CEEEEEEEEeCCCce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence            468999999964334        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        157 FGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       157 ~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      ++|+|...              .++.++|+||++.++. .|++||+.++..... .......+++.++++.+++.+..++
T Consensus        54 ~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~  132 (214)
T cd03292          54 TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHRA  132 (214)
T ss_pred             CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhC
Confidence            99997421              1346999999998876 599999987531100 0001123457788999998766554


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .++|+|++||+++.+.
T Consensus       133 ~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~  200 (214)
T cd03292         133 L---------PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD  200 (214)
T ss_pred             C---------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3         578999999999999999999999999999999999999999888764   3799999999998765

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.3e-35  Score=264.72  Aligned_cols=180  Identities=19%  Similarity=0.227  Sum_probs=145.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+.+..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~~~~--------il~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   53 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQ--------ALKNINLNINPGEFVAII--------GPSGAGKSTLLRC-------I----NRLVE   53 (243)
T ss_pred             CeEEEeeeeecCCCcc--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence            3789999999962333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-----hh--hcCCCHHHHHHHHHHc
Q psy11400        156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-----MI--QKGITDADLTEYLQKV  213 (298)
Q Consensus       156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-----~~--~~~~~~~~i~~~l~~~  213 (298)
                      |++|+|...              .+++++|+||++.++. .|++||+.++.....     ..  ......+++.++++.+
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  133 (243)
T TIGR02315        54 PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV  133 (243)
T ss_pred             CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc
Confidence            999997531              1356999999998765 699999987532100     00  0011234677888999


Q ss_pred             CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400        214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH  289 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH  289 (298)
                      ++.+..+++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||
T Consensus       134 ~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH  204 (243)
T TIGR02315       134 GLADKAYQR---------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH  204 (243)
T ss_pred             CcHhhhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            887665543         679999999999999999999999999999999999999988887764    3789999999


Q ss_pred             Ccchhh
Q psy11400        290 RKSLWT  295 (298)
Q Consensus       290 ~l~~~~  295 (298)
                      +++.+.
T Consensus       205 ~~~~~~  210 (243)
T TIGR02315       205 QVDLAK  210 (243)
T ss_pred             CHHHHH
Confidence            998764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.8e-35  Score=261.78  Aligned_cols=180  Identities=22%  Similarity=0.199  Sum_probs=145.0

Q ss_pred             EEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         81 RGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        81 i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ++++||++.|+++.  .+       +++|+||++++|++++|+        |||  ||  |+++       +    +|++
T Consensus         2 l~~~~v~~~~~~~~~~~~-------~l~~isl~i~~G~~~~i~--------G~nGsGKSTLl~~-------i----~G~~   55 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTR-------VLKGVSLSIGKGEIVAIV--------GSSGSGKSTLLHL-------L----GGLD   55 (221)
T ss_pred             EEEEeeeEEccCCCcceE-------eEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            68999999996421  22       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        155 PLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       155 ~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      +|++|+|....               ++.++|+||++.++. .|++||+.++...... ......+++.++++.+++.+.
T Consensus        56 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~  134 (221)
T TIGR02211        56 NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK-SVKEAKERAYEMLEKVGLEHR  134 (221)
T ss_pred             CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhh
Confidence            99999985310               146999999998774 6999999764211000 000113456788999998766


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .+++         +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++    .++|+|++||+++.+
T Consensus       135 ~~~~---------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~  205 (221)
T TIGR02211       135 INHR---------PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA  205 (221)
T ss_pred             hhCC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            5553         579999999999999999999999999999999999999999887764    379999999999876


Q ss_pred             hh
Q psy11400        295 TH  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       206 ~~  207 (221)
T TIGR02211       206 KK  207 (221)
T ss_pred             hh
Confidence            54

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2.2e-35  Score=264.56  Aligned_cols=179  Identities=22%  Similarity=0.228  Sum_probs=145.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   53 (239)
T cd03296           2 SIEVRNVSKRFGD-FV--------ALDDVSLDIPSGELVALL--------GPSGSGKTTLLRL-------I----AGLER   53 (239)
T ss_pred             EEEEEeEEEEECC-EE--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4789999999964 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh---hcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI---QKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~---~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...         .++.++|+||+|.++. .|+.||+.++.......   ......+.+.++++.+++.+..+++
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  133 (239)
T cd03296          54 PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY  133 (239)
T ss_pred             CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence            999997531         1356999999998775 69999998753211000   0001124567889999987665553


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                               +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++    .++|+|++||+++.+.
T Consensus       134 ---------~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~  201 (239)
T cd03296         134 ---------PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEAL  201 (239)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence                     679999999999999999999999999999999999999999888764    3789999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-35  Score=279.17  Aligned_cols=180  Identities=24%  Similarity=0.266  Sum_probs=147.2

Q ss_pred             cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +++++||+++|+.+  ..+       +++|+||+|++|++++|+        |||  ||  |+++       +    +|+
T Consensus         1 mi~i~~l~~~y~~~~~~~~-------il~~vsl~i~~Gei~~ii--------G~nGsGKSTLlk~-------L----~Gl   54 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIH-------ALNNVSLHIPAGEIFGVI--------GASGAGKSTLIRC-------I----NLL   54 (343)
T ss_pred             CEEEEeEEEEeCCCCCceE-------EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCC
Confidence            47899999999621  222       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        154 WPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      ++|++|+|...              .+++|+|+||++.++. .|++||+.++...... ......+++.++++.+++.+.
T Consensus        55 ~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~  133 (343)
T PRK11153         55 ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDK  133 (343)
T ss_pred             CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchh
Confidence            99999997531              1457999999998775 7999999875321100 000113467788999999776


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .+++         +.+||||||||++|||||+++|++|||||||++||+.+...+.+++++    .|+|+|++||+++.+
T Consensus       134 ~~~~---------~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i  204 (343)
T PRK11153        134 ADRY---------PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV  204 (343)
T ss_pred             hhCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            6553         679999999999999999999999999999999999999999888765    379999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       205 ~  205 (343)
T PRK11153        205 K  205 (343)
T ss_pred             H
Confidence            4

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=4.5e-35  Score=249.09  Aligned_cols=149  Identities=45%  Similarity=0.820  Sum_probs=134.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|++++|+++..        +++|+||++++|++++|+        |+|  ||  |+++       +    .|+++|
T Consensus         1 i~~~~~~~~~~~~~~--------~l~~i~l~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   53 (166)
T cd03223           1 IELENLSLATPDGRV--------LLKDLSFEIKPGDRLLIT--------GPSGTGKSSLFRA-------L----AGLWPW   53 (166)
T ss_pred             CEEEEEEEEcCCCCe--------eeecCeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence            468999999964434        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS  236 (298)
                      ++|+|....+++++|++|++.++..|++||+.++                                        ++.+||
T Consensus        54 ~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----------------------------------------~~~~LS   93 (166)
T cd03223          54 GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----------------------------------------WDDVLS   93 (166)
T ss_pred             CCceEEECCCceEEEECCCCccccccHHHHhhcc----------------------------------------CCCCCC
Confidence            9999987766789999999988888999998752                                        135899


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      ||||||++||||++.+|+++||||||++||+.+.+.+.+.+++.+.|+|++||+++....
T Consensus        94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~  153 (166)
T cd03223          94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKF  153 (166)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhh
Confidence            999999999999999999999999999999999999999998888999999999876543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-35  Score=264.92  Aligned_cols=173  Identities=23%  Similarity=0.160  Sum_probs=147.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|+++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|++
T Consensus        11 ~~l~i~~l~~~~~~-~~--------il~~isl~i~~Ge~~~I~--------G~NGsGKSTLlk~-------l----~Gl~   62 (257)
T PRK11247         11 TPLLLNAVSKRYGE-RT--------VLNQLDLHIPAGQFVAVV--------GRSGCGKSTLLRL-------L----AGLE   62 (257)
T ss_pred             CcEEEEEEEEEECC-cc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            45899999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        155 PLFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       155 ~~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                      +|++|+|...      .++.++|+||++.++. .|++||+.++..       ....+++.++++.+++.+..+++     
T Consensus        63 ~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~-----  130 (257)
T PRK11247         63 TPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK-------GQWRDAALQALAAVGLADRANEW-----  130 (257)
T ss_pred             CCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc-------chHHHHHHHHHHHcCChhHhcCC-----
Confidence            9999998632      2467999999998776 699999987531       11245678889999997665543     


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                          +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|+|||+++.+.
T Consensus       131 ----~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~  198 (257)
T PRK11247        131 ----PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAV  198 (257)
T ss_pred             ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence                679999999999999999999999999999999999999988887754    3799999999998754

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-35  Score=279.00  Aligned_cols=179  Identities=25%  Similarity=0.249  Sum_probs=149.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+|+++|+++.|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       |    +|+.
T Consensus         5 ~~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------I----aGl~   56 (351)
T PRK11432          5 NFVVLKNITKRFGS-NT--------VIDNLNLTIKQGTMVTLL--------GPSGCGKTTVLRL-------V----AGLE   56 (351)
T ss_pred             cEEEEEeEEEEECC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HCCC
Confidence            36899999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        155 PLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       155 ~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      +|++|+|...         .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.++.  
T Consensus        57 ~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~--  133 (351)
T PRK11432         57 KPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRY--  133 (351)
T ss_pred             CCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCC--
Confidence            9999998532         2467999999998875 6999999987521100 0111235678899999998777663  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                             +.+|||||||||+|||||+.+|++|+||||||+||+..+..+.+.+++    .++|+|+|||+++.+.
T Consensus       134 -------~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~  201 (351)
T PRK11432        134 -------VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAF  201 (351)
T ss_pred             -------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence                   679999999999999999999999999999999999999988877654    4899999999998753

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=7.5e-35  Score=260.26  Aligned_cols=182  Identities=27%  Similarity=0.361  Sum_probs=151.3

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+++..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~~~~--------~l~~i~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~~   53 (236)
T cd03253           1 IEFENVTFAYDPGRP--------VLKDVSFTIPAGKKVAIV--------GPSGSGKSTILRL-------L----FRFYDV   53 (236)
T ss_pred             CEEEEEEEEeCCCCc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccCC
Confidence            468999999964444        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG  224 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g  224 (298)
                      ++|+|...           .++.++|+||++.++..|++||+.++..       ......+.+.++.+++.+..+. +.+
T Consensus        54 ~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~  126 (236)
T cd03253          54 SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP-------DATDEEVIEAAKAAQIHDKIMRFPDG  126 (236)
T ss_pred             CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCC-------CCCHHHHHHHHHHcCcHHHHHhcccc
Confidence            99998532           1356999999999888999999987642       1234456667777787766554 446


Q ss_pred             cccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      +++... ++.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.  +.|+|++||+++.+..
T Consensus       127 ~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~  201 (236)
T cd03253         127 YDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN  201 (236)
T ss_pred             ccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence            666544 67899999999999999999999999999999999999999998887653  7899999999987643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-35  Score=271.13  Aligned_cols=182  Identities=20%  Similarity=0.161  Sum_probs=144.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|+....    ...++|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+.+|
T Consensus         3 l~~~~l~~~y~~~~~----~~~~~l~~vs~~i~~Ge~~~i~--------G~nGaGKSTLl~~-------l----~Gl~~p   59 (287)
T PRK13637          3 IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLI--------GHTGSGKSTLIQH-------L----NGLLKP   59 (287)
T ss_pred             EEEEEEEEECCCCCc----cccceeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCC
Confidence            789999999964210    0002999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc--hhh
Q psy11400        157 FGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG--YIL  219 (298)
Q Consensus       157 ~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~  219 (298)
                      ++|+|...             .+++|+||||+|  .++..|++||+.++...... ......+++.++++.+++.  ++.
T Consensus        60 ~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~  138 (287)
T PRK13637         60 TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIENRVKRAMNIVGLDYEDYK  138 (287)
T ss_pred             CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC-CHHHHHHHHHHHHHHcCCCchhhc
Confidence            99998421             135799999998  45678999999875311000 0011124577889999986  344


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++         .+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++    .|.|||++||+++.+.
T Consensus       139 ~~---------~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~  209 (287)
T PRK13637        139 DK---------SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVA  209 (287)
T ss_pred             cC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            43         3689999999999999999999999999999999999999999888754    3899999999998764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.8e-35  Score=257.53  Aligned_cols=173  Identities=22%  Similarity=0.163  Sum_probs=146.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|++++|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+.+|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~~~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   52 (208)
T cd03268           1 LKTNDLTKTYGK-KR--------VLDDISLHVKKGEIYGFL--------GPNGAGKTTTMKI-------I----LGLIKP   52 (208)
T ss_pred             CEEEEEEEEECC-eE--------eEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcCC
Confidence            468999999953 33        999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...         .++.++|+||++.++ ..|++||+.++...     .....+++.++++.+++.+..+++    
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~----  123 (208)
T cd03268          53 DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL-----LGIRKKRIDEVLDVVGLKDSAKKK----  123 (208)
T ss_pred             CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh-----cCCcHHHHHHHHHHcCCHHHHhhh----
Confidence            99998542         135699999999776 57999999775311     112356788899999998766553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++   .++|+|++||+++.+.
T Consensus       124 -----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~  190 (208)
T cd03268         124 -----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ  190 (208)
T ss_pred             -----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence                 678999999999999999999999999999999999999999888765   4799999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=2.7e-35  Score=259.27  Aligned_cols=177  Identities=20%  Similarity=0.220  Sum_probs=144.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+. ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (213)
T cd03301           1 VELENVTKRFGN-VT--------ALDDLNLDIADGEFVVLL--------GPSGCGKTTTLRM-------I----AGLEEP   52 (213)
T ss_pred             CEEEeeEEEECC-ee--------eeeceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...         .++.++|+||++.++. .|++||+.++..... .......+++.++++.+++.+..+++    
T Consensus        53 ~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~----  127 (213)
T cd03301          53 TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRK----  127 (213)
T ss_pred             CceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCC----
Confidence            99997531         2346999999998774 699999987531100 00011234567888999987666553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||+++.+.
T Consensus       128 -----~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~  195 (213)
T cd03301         128 -----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAM  195 (213)
T ss_pred             -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence                 679999999999999999999999999999999999999999887764    3799999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>KOG0054|consensus

Probab=100.00  E-value=5.6e-35  Score=307.82  Aligned_cols=240  Identities=19%  Similarity=0.194  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCC
Q psy11400         14 LVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSG   93 (298)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~   93 (298)
                      .+++.+.+.|++....++..-..+.+|+.+..+.+++ .  +....    ..    ...+-=+.++.|+|+|++.+|..+
T Consensus      1083 al~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~--p~~~~----~~----~pp~~WP~~G~I~f~~~~~RYrp~ 1151 (1381)
T KOG0054|consen 1083 ALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-A--PLEIE----ES----RPPPSWPSKGEIEFEDLSLRYRPN 1151 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-C--CCCCc----CC----CCCCCCCCCCeEEEEEeEEEeCCC
Confidence            3566777888888888888888888999888886654 1  11000    00    000111346789999999999655


Q ss_pred             CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec------
Q psy11400         94 GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------  163 (298)
Q Consensus        94 ~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------  163 (298)
                      .+.       ||+|+||+|++||+++||        |.+  ||  |...       |    -++..|.+|+|..      
T Consensus      1152 lp~-------VLk~is~~I~p~eKVGIV--------GRTGaGKSSL~~a-------L----FRl~e~~~G~I~IDgvdI~ 1205 (1381)
T KOG0054|consen 1152 LPL-------VLKGISFTIKPGEKVGIV--------GRTGAGKSSLILA-------L----FRLVEPAEGEILIDGVDIS 1205 (1381)
T ss_pred             Ccc-------hhcCceEEEcCCceEEEe--------CCCCCCHHHHHHH-------H----HHhcCccCCeEEEcCeecc
Confidence            443       999999999999999999        999  99  7666       5    6677788999853      


Q ss_pred             -----cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCC
Q psy11400        164 -----PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLS  236 (298)
Q Consensus       164 -----~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LS  236 (298)
                           +.|++++++||||.+|+||+|.|+--.        ...+|+++.++|+.++|.+.+.+ |.|+|..+. .|.++|
T Consensus      1206 ~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1206 KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred             cccHHHHHhcCeeeCCCCceecCccccccCcc--------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence                 248899999999999999999998532        25689999999999999987754 888999865 788999


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      -||||.+|+||||+++++||+|||+|+++|+++...|.+.+++  .++|||.|+||++++-..|
T Consensus      1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~D 1341 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSD 1341 (1381)
T ss_pred             hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcC
Confidence            9999999999999999999999999999999999999999987  4999999999999886543

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=3.8e-35  Score=260.16  Aligned_cols=180  Identities=21%  Similarity=0.195  Sum_probs=145.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   53 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQ--------ALQGVTFHMRPGEMAFLT--------GHSGAGKSTLLKL-------I----CGIER   53 (222)
T ss_pred             CEEEEeeEEEecCCCe--------EEeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999953333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--------------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP--------------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...              .++.++|+||++.+ +..|++||+.++...... ......+++.++++.+++.+..+
T Consensus        54 ~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~  132 (222)
T PRK10908         54 PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA-SGDDIRRRVSAALDKVGLLDKAK  132 (222)
T ss_pred             CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCChhhhh
Confidence            999997521              13579999999976 457999999875311000 00011235677888998876655


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ++         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+++.+..
T Consensus       133 ~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  202 (222)
T PRK10908        133 NF---------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR  202 (222)
T ss_pred             CC---------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            43         679999999999999999999999999999999999999988887764   37899999999987653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=4.4e-35  Score=262.41  Aligned_cols=179  Identities=20%  Similarity=0.209  Sum_probs=144.5

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|+++..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~~~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   53 (241)
T cd03256           1 IEVENLSKTYPNGKK--------ALKDVSLSINPGEFVALI--------GPSGAGKSTLLRC-------L----NGLVEP   53 (241)
T ss_pred             CEEeeEEEecCCccE--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcCC
Confidence            468999999964233        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch-----hhh--hcCCCHHHHHHHHHHcC
Q psy11400        157 FGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-----DMI--QKGITDADLTEYLQKVQ  214 (298)
Q Consensus       157 ~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~--~~~~~~~~i~~~l~~~~  214 (298)
                      ++|+|...              .++.++|+||++.++. .|+++|+.++....     ...  ......+++.++++.++
T Consensus        54 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  133 (241)
T cd03256          54 TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG  133 (241)
T ss_pred             CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcC
Confidence            99987521              1346999999998765 69999998753210     000  00112345778889998


Q ss_pred             CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      +.+..++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|+|+|++||+
T Consensus       134 l~~~~~~---------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~  204 (241)
T cd03256         134 LLDKAYQ---------RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ  204 (241)
T ss_pred             ChhhhCC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            8765544         3679999999999999999999999999999999999999998887764    38999999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      ++.+.
T Consensus       205 ~~~~~  209 (241)
T cd03256         205 VDLAR  209 (241)
T ss_pred             HHHHH
Confidence            98765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-35  Score=279.17  Aligned_cols=178  Identities=24%  Similarity=0.229  Sum_probs=149.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +|+|+||++++||+++|+        |||  ||  |+++       |    +|+.+
T Consensus         4 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------GpsGsGKSTLLr~-------i----aGl~~   55 (353)
T TIGR03265         4 YLSIDNIRKRFGA-FT--------ALKDISLSVKKGEFVCLL--------GPSGCGKTTLLRI-------I----AGLER   55 (353)
T ss_pred             EEEEEEEEEEeCC-eE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HCCCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .++.|+||||++.+|+ .|++||+.|+...... ......+++.++++.++|.++.++.   
T Consensus        56 p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~---  131 (353)
T TIGR03265        56 QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKY---  131 (353)
T ss_pred             CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCC---
Confidence            999998632         2467999999998875 7999999987421100 0011245688999999998877764   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++++||||||+||+.++..+.+.+++    .+.|+|+|||+++.+.
T Consensus       132 ------~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~  199 (353)
T TIGR03265       132 ------PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEAL  199 (353)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence                  679999999999999999999999999999999999999988877654    4899999999998653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.6e-35  Score=258.98  Aligned_cols=178  Identities=25%  Similarity=0.293  Sum_probs=142.5

Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      ++|+++.|+++...       +++|+||++++|++++|+        |||  ||  |+++       +    .|+++|++
T Consensus         2 ~~~l~~~~~~~~~~-------il~~vs~~i~~G~~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~~~   55 (211)
T cd03225           2 LKNLSFSYPDGARP-------ALDDISLTIKKGEFVLIV--------GPNGSGKSTLLRL-------L----NGLLGPTS   55 (211)
T ss_pred             ceeEEEecCCCCee-------eecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCC
Confidence            67899999642222       899999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        159 GTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       159 G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |+|...           .++.|+|+||++.  ++..|++||+.++..... .......+++.++++.+++.+..+++   
T Consensus        56 G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~---  131 (211)
T cd03225          56 GEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEALELVGLEGLRDRS---  131 (211)
T ss_pred             ceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCcHhhhcCC---
Confidence            998531           1357999999983  567899999976421100 00001134567788899987665543   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                            +.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++   .++|+|++||+++.+..
T Consensus       132 ------~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~  199 (211)
T cd03225         132 ------PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE  199 (211)
T ss_pred             ------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence                  679999999999999999999999999999999999999999888764   37899999999987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=4e-35  Score=260.68  Aligned_cols=179  Identities=24%  Similarity=0.227  Sum_probs=144.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW--  154 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~--  154 (298)
                      ++++||++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|++  
T Consensus         1 i~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~   52 (227)
T cd03260           1 IELRDLNVYYGD-KH--------ALKDISLDIPKGEITALI--------GPSGCGKSTLLRL-------L----NRLNDL   52 (227)
T ss_pred             CEEEEEEEEcCC-ce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhccc
Confidence            468999999963 33        899999999999999999        999  99  9999       8    9998  


Q ss_pred             ---ccCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        155 ---PLFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       155 ---~~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                         +|++|+|...             .+++++|+||++.++..|++||+.++.............+++.++++.+++.+.
T Consensus        53 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  132 (227)
T cd03260          53 IPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE  132 (227)
T ss_pred             ccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH
Confidence               8999997421             135699999999888789999998753211000000023467788999998765


Q ss_pred             hhhcCCccccccc-CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        219 LNREKGWDTVADW-IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       219 ~~~~~g~d~~~~~-~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      .++.        . +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++.  .+|+|++||+++.+.
T Consensus       133 ~~~~--------~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  204 (227)
T cd03260         133 VKDR--------LHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAA  204 (227)
T ss_pred             Hhcc--------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHH
Confidence            5442        1 4799999999999999999999999999999999999999999888753  379999999998754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=3e-35  Score=262.45  Aligned_cols=179  Identities=22%  Similarity=0.257  Sum_probs=146.1

Q ss_pred             cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      +++++|+++.|++..   +        +++|+||+|++||+++|+        |||  ||  |+++       +    +|
T Consensus         1 ~i~~~~l~~~~~~~~~~~~--------il~~~s~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G   53 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVT--------ALKDVSLSVPKGEIFGII--------GRSGAGKSTLIRC-------I----NG   53 (233)
T ss_pred             CeEEecceEEccCCCCcee--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hC
Confidence            378999999996431   3        999999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        153 LWPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       153 l~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      +++|++|+|...              .++.++|+||++.++. .|++||+.++..... .......+.+.++++.+++.+
T Consensus        54 ~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~  132 (233)
T cd03258          54 LERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG-VPKAEIEERVLELLELVGLED  132 (233)
T ss_pred             CCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChh
Confidence            999999997521              1356999999998876 699999976421100 000111345778899999876


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL  293 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~  293 (298)
                      ..+++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||+++.
T Consensus       133 ~~~~~---------~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~  203 (233)
T cd03258         133 KADAY---------PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV  203 (233)
T ss_pred             hhhcC---------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            65553         679999999999999999999999999999999999999999888764    37999999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       204 ~~  205 (233)
T cd03258         204 VK  205 (233)
T ss_pred             HH
Confidence            64

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-35  Score=273.98  Aligned_cols=188  Identities=20%  Similarity=0.208  Sum_probs=145.7

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+.++++|+++.|+.+..+       +|+|+||+|++||+++|+        |+|  ||  |+++       |    .|+
T Consensus        78 ~~~i~~~nls~~y~~~~~~-------~L~~is~~I~~Ge~v~Iv--------G~~GsGKSTLl~~-------L----~g~  131 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTKH-------VLHDLNLDIKRNKVTAFI--------GPSGCGKSTFLRN-------L----NQL  131 (329)
T ss_pred             CceEEEEeeEEEecCCCce-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            4579999999999643332       899999999999999999        999  99  9998       7    777


Q ss_pred             cc-----cCCceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WP-----LFGGTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~-----~~~G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      .+     |++|+|..             ..++.++||||+|++|++|++||+.|+.............+.+.++++.+++
T Consensus       132 ~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L  211 (329)
T PRK14257        132 NDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL  211 (329)
T ss_pred             ccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC
Confidence            75     46888642             2356799999999999999999998752110000000011235667888877


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      .+.++     +.....+.+||||||||++||||++.+|+++||||||+|||+.+...+.+.+++  .++|+|+|||+++.
T Consensus       212 ~~~l~-----~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~  286 (329)
T PRK14257        212 WDEVK-----DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ  286 (329)
T ss_pred             cchhh-----hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            43221     112235789999999999999999999999999999999999999998888765  37999999999998


Q ss_pred             hhh
Q psy11400        294 WTH  296 (298)
Q Consensus       294 ~~~  296 (298)
                      +..
T Consensus       287 i~~  289 (329)
T PRK14257        287 AQR  289 (329)
T ss_pred             HHH
Confidence            754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=2.9e-35  Score=262.93  Aligned_cols=179  Identities=23%  Similarity=0.249  Sum_probs=144.3

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~~   52 (236)
T cd03219           1 LEVRGLTKRFGG-LV--------ALDDVSFSVRPGEIHGLI--------GPNGAGKTTLFNL-------I----SGFLRP   52 (236)
T ss_pred             CeeeeeEEEECC-EE--------EecCceEEecCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh---------hcCCCHHHHHHHHHHcC
Q psy11400        157 FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI---------QKGITDADLTEYLQKVQ  214 (298)
Q Consensus       157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~---------~~~~~~~~i~~~l~~~~  214 (298)
                      ++|+|...            .+..++|+||++.++. .|++||+.++.......         ......+.+.++++.++
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  132 (236)
T cd03219          53 TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG  132 (236)
T ss_pred             CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcC
Confidence            99997531            1346999999998876 49999998753211000         00011345678888888


Q ss_pred             CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400        215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK  291 (298)
Q Consensus       215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l  291 (298)
                      +.+..+++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .++|+|++||++
T Consensus       133 l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~  203 (236)
T cd03219         133 LADLADRP---------AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM  203 (236)
T ss_pred             ccchhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence            87655443         679999999999999999999999999999999999999999888764   479999999999


Q ss_pred             chhhh
Q psy11400        292 SLWTH  296 (298)
Q Consensus       292 ~~~~~  296 (298)
                      +.+..
T Consensus       204 ~~~~~  208 (236)
T cd03219         204 DVVMS  208 (236)
T ss_pred             HHHHH
Confidence            87643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=3.8e-35  Score=258.13  Aligned_cols=178  Identities=23%  Similarity=0.236  Sum_probs=144.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|++ ..        +++++||++++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~~s~~i~~G~~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (213)
T cd03262           1 IEIKNLHKSFGD-FH--------VLKGIDLTVKKGEVVVII--------GPSGSGKSTLLRC-------I----NLLEEP   52 (213)
T ss_pred             CEEEEEEEEECC-eE--------eecCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999964 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        157 FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       157 ~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      ++|+|...             .++.++|+||++.++. .|++||+.++.............+++.++++.+++.+..+++
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  132 (213)
T cd03262          53 DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY  132 (213)
T ss_pred             CCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC
Confidence            99987521             1356999999998775 699999987531000000011234567888888887666553


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               +.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++   .++|+|++||+++.+.
T Consensus       133 ---------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~  199 (213)
T cd03262         133 ---------PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR  199 (213)
T ss_pred             ---------ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence                     679999999999999999999999999999999999999999888765   3789999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-35  Score=272.32  Aligned_cols=183  Identities=20%  Similarity=0.161  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||++.|+++..    ...++|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~i~~~~l~~~y~~~~~----~~~~~l~~vsl~i~~Ge~v~ii--------G~nGsGKSTLl~~-------L----~Gl~~   58 (305)
T PRK13651          2 QIKVKNIVKIFNKKLP----TELKALDNVSVEINQGEFIAII--------GQTGSGKTTFIEH-------L----NALLL   58 (305)
T ss_pred             EEEEEEEEEEECCCCC----ccccceeeeEEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence            3789999999974321    0001899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------------------------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhh
Q psy11400        156 LFGGTVTKP-----------------------------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQ  198 (298)
Q Consensus       156 ~~~G~i~~~-----------------------------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~  198 (298)
                      |++|+|...                                   .++.||||||+|  .++..|++||+.|+...... .
T Consensus        59 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~-~  137 (305)
T PRK13651         59 PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGV-S  137 (305)
T ss_pred             CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCC-C
Confidence            999997431                                   134699999987  46677999999876321100 0


Q ss_pred             cCCCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH
Q psy11400        199 KGITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC  277 (298)
Q Consensus       199 ~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l  277 (298)
                      .....+++.++++.+++. ++.+++         +.+||||||||++|||||+.+|++|||||||++||+.....+.+.+
T Consensus       138 ~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l  208 (305)
T PRK13651        138 KEEAKKRAAKYIELVGLDESYLQRS---------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF  208 (305)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            011234678889999996 555553         6799999999999999999999999999999999999999988877


Q ss_pred             Hh---cCcEEEEEecCcchhh
Q psy11400        278 RE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       278 ~~---~~~TiIiitH~l~~~~  295 (298)
                      ++   .|+|||+|||+++.+.
T Consensus       209 ~~l~~~g~tiiivtHd~~~~~  229 (305)
T PRK13651        209 DNLNKQGKTIILVTHDLDNVL  229 (305)
T ss_pred             HHHHHCCCEEEEEeeCHHHHH
Confidence            54   4899999999998653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=2e-34  Score=257.18  Aligned_cols=183  Identities=23%  Similarity=0.326  Sum_probs=149.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++...+       +++|+||++++|++++|+        |||  ||  |+++       +    +|+.+|
T Consensus         1 i~~~~l~~~~~~~~~~-------~l~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p   54 (234)
T cd03251           1 VEFKNVTFRYPGDGPP-------VLRDISLDIPAGETVALV--------GPSGSGKSTLVNL-------I----PRFYDV   54 (234)
T ss_pred             CEEEEEEEEeCCCCcc-------ceeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccccC
Confidence            4689999999643222       899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG  224 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g  224 (298)
                      ++|+|...           .++.++|+||++.++..|++||+.++..       .....++.+.++..++.++++. +.+
T Consensus        55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~  127 (234)
T cd03251          55 DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP-------GATREEVEEAARAANAHEFIMELPEG  127 (234)
T ss_pred             CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCC-------CCCHHHHHHHHHHcCcHHHHHhcccC
Confidence            99998531           1456999999999888899999987642       1223445566666677666554 335


Q ss_pred             cccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      +++..+ ++.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .+.|+|++||+++.+..
T Consensus       128 l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  202 (234)
T cd03251         128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN  202 (234)
T ss_pred             cceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence            555433 6789999999999999999999999999999999999999999988875  38899999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4e-35  Score=259.40  Aligned_cols=179  Identities=20%  Similarity=0.186  Sum_probs=145.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|+++..+       +++|+||++++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~~~~~-------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   54 (220)
T cd03263           1 LQIRNLTKTYKKGTKP-------AVDDLSLNVYKGEIFGLL--------GHNGAGKTTTLKM-------L----TGELRP   54 (220)
T ss_pred             CEEEeeEEEeCCCCce-------eecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            4689999999643122       899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|+|...          .+++++|+||++.++ ..|+++|+.++...... ......+++.++++.+++.+..+++   
T Consensus        55 ~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---  130 (220)
T cd03263          55 TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL-PKSEIKEEVELLLRVLGLTDKANKR---  130 (220)
T ss_pred             CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhCh---
Confidence            99998531          245699999999877 57999999864211000 0001134577889999987655543   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++  .++|+|++||+++.+.
T Consensus       131 ------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  196 (220)
T cd03263         131 ------ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE  196 (220)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence                  578999999999999999999999999999999999999999988875  3689999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=6.7e-35  Score=259.43  Aligned_cols=182  Identities=23%  Similarity=0.219  Sum_probs=146.8

Q ss_pred             CcEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         79 NLRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      .+++++|+++.|+++.  .+       +++|+||+|++|++++|+        |+|  ||  |+++       +    +|
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~-------~l~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G   58 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELS-------ILTGVELVVKRGETIALI--------GESGSGKSTLLAI-------L----AG   58 (228)
T ss_pred             ceEEEeeeEEEccCCCcceE-------EEeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hc
Confidence            3689999999996432  12       899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        153 LWPLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       153 l~~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +++|++|+|....               ++.++|+||++.++. .|+.||+.++...... ......+++.++++.+++.
T Consensus        59 l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~  137 (228)
T PRK10584         59 LDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE-SSRQSRNGAKALLEQLGLG  137 (228)
T ss_pred             CCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCH
Confidence            9999999975210               246999999998776 5999999764211000 0011235678889999997


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS  292 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~  292 (298)
                      +..++.         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .+.|||++||+++
T Consensus       138 ~~~~~~---------~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  208 (228)
T PRK10584        138 KRLDHL---------PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ  208 (228)
T ss_pred             hHhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            665543         678999999999999999999999999999999999999999888754    3789999999998


Q ss_pred             hhhh
Q psy11400        293 LWTH  296 (298)
Q Consensus       293 ~~~~  296 (298)
                      .+..
T Consensus       209 ~~~~  212 (228)
T PRK10584        209 LAAR  212 (228)
T ss_pred             HHHh
Confidence            7643

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-35  Score=267.81  Aligned_cols=181  Identities=24%  Similarity=0.249  Sum_probs=147.2

Q ss_pred             cEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         80 LRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +++++||+++|+... ..       +|+|+||+|++||+++|+        |+|  ||  |+++       +    +|++
T Consensus         4 ~l~~~~l~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   57 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKY-------TLNDVSFHVKQGEWLSII--------GHNGSGKSTTVRL-------I----DGLL   57 (279)
T ss_pred             eEEEEeEEEEcCCCCcCe-------eeeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            589999999996422 22       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|++|+|...           .+++++|+||+|.  ++..|++||+.++..... .......+++.++++.+++.++.++
T Consensus        58 ~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~  136 (279)
T PRK13650         58 EAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG-IPHEEMKERVNEALELVGMQDFKER  136 (279)
T ss_pred             CCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCCHhHhhC
Confidence            9999997531           1357999999983  456799999987632110 0001113467888999999877665


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +         +.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++    .|+|+|++||+++.+..
T Consensus       137 ~---------~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~  206 (279)
T PRK13650        137 E---------PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL  206 (279)
T ss_pred             C---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence            3         679999999999999999999999999999999999999998887654    38999999999987643

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-35  Score=264.10  Aligned_cols=178  Identities=22%  Similarity=0.203  Sum_probs=145.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         1 ml~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   52 (255)
T PRK11248          1 MLQISHLYADYGG-KP--------ALEDINLTLESGELLVVL--------GPSGCGKTTLLNL-------I----AGFVP   52 (255)
T ss_pred             CEEEEEEEEEeCC-ee--------eEeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400        156 LFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV  228 (298)
Q Consensus       156 ~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~  228 (298)
                      |++|+|...      .+..++|+||++.++. .|+.+|+.++...... ......+++.++++.+++.+..+++      
T Consensus        53 p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~------  125 (255)
T PRK11248         53 YQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV-EKMQRLEIAHQMLKKVGLEGAEKRY------  125 (255)
T ss_pred             CCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCChhHhhCC------
Confidence            999998642      2346999999998775 6999999875311000 0011134578889999997665543      


Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                         +.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++    .|+|+|++||+++.+.
T Consensus       126 ---~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~  193 (255)
T PRK11248        126 ---IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV  193 (255)
T ss_pred             ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence               679999999999999999999999999999999999999999887764    3799999999998764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-35  Score=268.89  Aligned_cols=183  Identities=23%  Similarity=0.209  Sum_probs=145.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||+|.|+.+...  .  ..+|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 mi~~~~v~~~y~~~~~~--~--~~~l~~vsl~i~~Ge~v~i~--------G~nGsGKSTLl~~-------l----~Gl~~   57 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPF--A--SRALFDIDLEVKKGSYTALI--------GHTGSGKSTLLQH-------L----NGLLQ   57 (288)
T ss_pred             CEEEEEEEEEeCCCCcc--c--ccceeeeEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCC
Confidence            47899999999643210  0  01899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-h
Q psy11400        156 LFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-Y  217 (298)
Q Consensus       156 ~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~  217 (298)
                      |++|+|...               .++.++||||+|  .++..|+.||+.|+...... .......++.++++.+++. .
T Consensus        58 p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~  136 (288)
T PRK13643         58 PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI-PKEKAEKIAAEKLEMVGLADE  136 (288)
T ss_pred             CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCChh
Confidence            999997431               135699999998  67778999999875321000 0011134577888999985 3


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      +.+++         +..||||||||++|||||+.+|++|||||||++||+.+...+.+.+++   .|+|||++||+++.+
T Consensus       137 ~~~~~---------~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~  207 (288)
T PRK13643        137 FWEKS---------PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDV  207 (288)
T ss_pred             hccCC---------cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence            54443         679999999999999999999999999999999999999998887754   489999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       208 ~  208 (288)
T PRK13643        208 A  208 (288)
T ss_pred             H
Confidence            4

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4.2e-35  Score=270.65  Aligned_cols=180  Identities=25%  Similarity=0.303  Sum_probs=149.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||++.|..+..        +|+|+||+|++|++++++        |||  ||  |+++       +    .|+..
T Consensus         4 ~i~~~~l~k~~~~~~~--------~l~~vs~~i~~Gei~gll--------G~NGAGKTTllk~-------l----~gl~~   56 (293)
T COG1131           4 VIEVRNLTKKYGGDKT--------ALDGVSFEVEPGEIFGLL--------GPNGAGKTTLLKI-------L----AGLLK   56 (293)
T ss_pred             eeeecceEEEeCCCCE--------EEeceeEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence            4788999999963334        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .+++|||+||+|.++. .|++||+.|....... ......+++.++++.++|.+..++   
T Consensus        57 p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~---  132 (293)
T COG1131          57 PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDKANK---  132 (293)
T ss_pred             CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchhhCc---
Confidence            999998532          2467999999998764 6999999875422110 001235678999999999864333   


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC-cEEEEEecCcchhhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG-ITLFTVSHRKSLWTH  296 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~-~TiIiitH~l~~~~~  296 (298)
                            ...+||+|||||++||+||+++|+++||||||+|||+.....+++++++   .+ +||+++||.++.+..
T Consensus       133 ------~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~  202 (293)
T COG1131         133 ------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE  202 (293)
T ss_pred             ------chhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence                  3679999999999999999999999999999999999999999988775   34 899999999987654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-35  Score=271.92  Aligned_cols=184  Identities=20%  Similarity=0.172  Sum_probs=146.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|+++|++|.|+....    ...++|+|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus        20 ~~l~~~nl~~~y~~~~~----~~~~~L~~vsl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------L----~Gl~   76 (320)
T PRK13631         20 IILRVKNLYCVFDEKQE----NELVALNNISYTFEKNKIYFII--------GNSGSGKSTLVTH-------F----NGLI   76 (320)
T ss_pred             ceEEEEeEEEEeCCCCc----ccccceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            46999999999964210    0001999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc---------------------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHH
Q psy11400        155 PLFGGTVTKP---------------------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDAD  205 (298)
Q Consensus       155 ~~~~G~i~~~---------------------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~  205 (298)
                      +|++|+|...                           .+++|+||||+|  .++..|++||+.++...... ........
T Consensus        77 ~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~  155 (320)
T PRK13631         77 KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGV-KKSEAKKL  155 (320)
T ss_pred             CCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCC-CHHHHHHH
Confidence            9999987531                           135699999998  57788999999876311000 00011235


Q ss_pred             HHHHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC
Q psy11400        206 LTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG  281 (298)
Q Consensus       206 i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~  281 (298)
                      +.++++.+++. .+.++         .+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++   .+
T Consensus       156 ~~~~l~~~gL~~~~~~~---------~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g  226 (320)
T PRK13631        156 AKFYLNKMGLDDSYLER---------SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN  226 (320)
T ss_pred             HHHHHHHcCCChhHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC
Confidence            67788888885 45444         3679999999999999999999999999999999999999999888764   48


Q ss_pred             cEEEEEecCcchhh
Q psy11400        282 ITLFTVSHRKSLWT  295 (298)
Q Consensus       282 ~TiIiitH~l~~~~  295 (298)
                      +|||+|||+++.+.
T Consensus       227 ~TiiivtHd~~~~~  240 (320)
T PRK13631        227 KTVFVITHTMEHVL  240 (320)
T ss_pred             CEEEEEecCHHHHH
Confidence            99999999998653

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=8e-35  Score=275.15  Aligned_cols=179  Identities=24%  Similarity=0.237  Sum_probs=148.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +++|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         2 ~L~i~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------I----aGl~~   53 (353)
T PRK10851          2 SIEIANIKKSFGR-TQ--------VLNDISLDIPSGQMVALL--------GPSGSGKTTLLRI-------I----AGLEH   53 (353)
T ss_pred             EEEEEEEEEEeCC-eE--------EEEEeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh---hhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED---MIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...         .+++|+||||++.+|+ .|++||+.|+.....   ........+++.++++.+++.++.+++
T Consensus        54 p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~  133 (353)
T PRK10851         54 QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY  133 (353)
T ss_pred             CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence            999998531         2457999999998875 699999998753110   000011235678899999998776653


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                               +.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.+++    .++|+|+|||+++.+.
T Consensus       134 ---------~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~  201 (353)
T PRK10851        134 ---------PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM  201 (353)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                     689999999999999999999999999999999999999888877654    3899999999998754

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=5.6e-35  Score=266.67  Aligned_cols=180  Identities=21%  Similarity=0.187  Sum_probs=145.0

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus         6 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   57 (269)
T PRK11831          6 NLVDMRGVSFTRGN-RC--------IFDNISLTVPRGKITAIM--------GPSGIGKTTLLRL-------I----GGQI   57 (269)
T ss_pred             ceEEEeCeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            36899999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        155 PLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       155 ~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      +|++|+|...              .++.++|+||++.++. .|+.||+.++.............+.+.++++.+++.+..
T Consensus        58 ~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~  137 (269)
T PRK11831         58 APDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA  137 (269)
T ss_pred             CCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh
Confidence            9999987521              1346999999998876 499999976421100000001124566788899987655


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++.         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .|+|+|+|||+++.+.
T Consensus       138 ~~~---------~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~  208 (269)
T PRK11831        138 KLM---------PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL  208 (269)
T ss_pred             hCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            543         679999999999999999999999999999999999999988887765    2789999999987654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=5.1e-35  Score=258.97  Aligned_cols=177  Identities=21%  Similarity=0.189  Sum_probs=144.5

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~~~~~~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~   52 (220)
T cd03265           1 IEVENLVKKYGD-FE--------AVRGVSFRVRRGEIFGLL--------GPNGAGKTTTIKM-------L----TTLLKP   52 (220)
T ss_pred             CEEEEEEEEECC-EE--------eeeceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999953 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|+|...          .+++++|+||++.++. .|+++|+.++...... ......+++.++++.+++.+..+++   
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---  128 (220)
T cd03265          53 TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRL---  128 (220)
T ss_pred             CceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCC---
Confidence            99998532          1356999999998765 5999999764211000 0011234678889999997666553   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++    .++|+|++||+++.+.
T Consensus       129 ------~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~  196 (220)
T cd03265         129 ------VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE  196 (220)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                  679999999999999999999999999999999999999998887764    3789999999998764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1.6e-34  Score=257.03  Aligned_cols=178  Identities=26%  Similarity=0.329  Sum_probs=146.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++||++.|++ ..        +++|+||+|++||+++|+        |||  ||  |+++       +    +|+.
T Consensus         6 ~~i~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~   57 (225)
T PRK10247          6 PLLQLQNVGYLAGD-AK--------ILNNISFSLRAGEFKLIT--------GPSGCGKSTLLKI-------V----ASLI   57 (225)
T ss_pred             ceEEEeccEEeeCC-ce--------eeeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence            46899999999953 34        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhc
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNRE  222 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~  222 (298)
                      +|++|+|...           .++.++|+||++.++..|++||+.++....   ......+++.++++.+++. ...+++
T Consensus        58 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~  134 (225)
T PRK10247         58 SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR---NQQPDPAIFLDDLERFALPDTILTKN  134 (225)
T ss_pred             CCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhc---CCChHHHHHHHHHHHcCCChHHhcCC
Confidence            9999998532           135799999999888889999998642110   0111234567889999885 344443


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                               +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++    .+.|+|++||+++.+..
T Consensus       135 ---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~  203 (225)
T PRK10247        135 ---------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH  203 (225)
T ss_pred             ---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence                     679999999999999999999999999999999999999988887664    37899999999987654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=258.77  Aligned_cols=174  Identities=26%  Similarity=0.289  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   54 (241)
T PRK14250          3 EIEFKEVSYSSFG-KE--------ILKDISVKFEGGAIYTIV--------GPSGAGKSTLIKL-------I----NRLID   54 (241)
T ss_pred             eEEEEeEEEEeCC-ee--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4889999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~  223 (298)
                      |++|+|...           .++.++|+||++.++..|++||+.++...     ......++.++++.+++. ++.++  
T Consensus        55 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~--  127 (241)
T PRK14250         55 PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML-----KGEKNVDVEYYLSIVGLNKEYATR--  127 (241)
T ss_pred             CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhh-----cCcHHHHHHHHHHHcCCCHHHhhC--
Confidence            999998532           14579999999988888999999875321     112235677889999986 44444  


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                             .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .|.|+|++||+++.+.
T Consensus       128 -------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~  196 (241)
T PRK14250        128 -------DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAK  196 (241)
T ss_pred             -------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence                   3679999999999999999999999999999999999999998887764    3899999999998754

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6.2e-35  Score=271.15  Aligned_cols=179  Identities=21%  Similarity=0.193  Sum_probs=147.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++||++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    .|++
T Consensus         6 ~~i~i~~l~k~~~~-~~--------~l~~vsl~i~~Gei~gll--------GpNGaGKSTLl~~-------l----~Gl~   57 (306)
T PRK13537          6 APIDFRNVEKRYGD-KL--------VVDGLSFHVQRGECFGLL--------GPNGAGKTTTLRM-------L----LGLT   57 (306)
T ss_pred             ceEEEEeEEEEECC-eE--------EEecceEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            46899999999963 33        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        155 PLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      +|++|+|...          .+++|||+||++.++. .|++||+.+....... .......++.++++.+++.+..+++ 
T Consensus        58 ~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-  135 (306)
T PRK13537         58 HPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-SAAAARALVPPLLEFAKLENKADAK-  135 (306)
T ss_pred             CCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhcCc-
Confidence            9999998531          2467999999998775 6999999863211100 0001124567888899987665553 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                              +.+||||||||++|||||+++|++|||||||+|||+.+...+++++++   .|+|||++||+++.+.
T Consensus       136 --------~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~  202 (306)
T PRK13537        136 --------VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAE  202 (306)
T ss_pred             --------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence                    678999999999999999999999999999999999999999888765   3899999999998764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-35  Score=268.91  Aligned_cols=182  Identities=23%  Similarity=0.194  Sum_probs=144.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|++++|+....    ...++|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+.+|
T Consensus         3 l~~~~l~~~y~~~~~----~~~~~L~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p   59 (290)
T PRK13634          3 ITFQKVEHRYQYKTP----FERRALYDVNVSIPSGSYVAII--------GHTGSGKSTLLQH-------L----NGLLQP   59 (290)
T ss_pred             EEEEEEEEEECCCCc----ccccceeeEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCC
Confidence            789999999964210    0002999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hh
Q psy11400        157 FGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YI  218 (298)
Q Consensus       157 ~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~  218 (298)
                      ++|+|...               .++.|+||||+|  .++..|++||+.++...... ......+.+.++++.++|. .+
T Consensus        60 ~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~  138 (290)
T PRK13634         60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGV-SEEDAKQKAREMIELVGLPEEL  138 (290)
T ss_pred             CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCChhh
Confidence            99997431               134699999998  56778999999875311000 0001124577889999996 44


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .+++         +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++    .|.|||+|||+++.+
T Consensus       139 ~~~~---------~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~  209 (290)
T PRK13634        139 LARS---------PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA  209 (290)
T ss_pred             hhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            4443         679999999999999999999999999999999999999998887754    389999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       210 ~  210 (290)
T PRK13634        210 A  210 (290)
T ss_pred             H
Confidence            4

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=4.7e-35  Score=277.44  Aligned_cols=179  Identities=21%  Similarity=0.210  Sum_probs=148.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.++++||++.|+. ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.
T Consensus         4 ~~l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl~   55 (362)
T TIGR03258         4 GGIRIDHLRVAYGA-NT--------VLDDLSLEIEAGELLALI--------GKSGCGKTTLLRA-------I----AGFV   55 (362)
T ss_pred             eEEEEEEEEEEECC-eE--------EEeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            35899999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCC--ceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        155 PLFG--GTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       155 ~~~~--G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      +|++  |+|...         .++.|+||||++.+|. .|++||+.|+...... .......++.++++.++|.++.++.
T Consensus        56 ~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~~~  134 (362)
T TIGR03258        56 KAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM-PKADIAERVADALKLVGLGDAAAHL  134 (362)
T ss_pred             CCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCchhhCC
Confidence            9999  998531         2457999999998875 5999999986421100 0011234678899999998877664


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----c-CcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----V-GITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~-~~TiIiitH~l~~~~  295 (298)
                               +.+|||||||||+|||||+.+|++|+||||||+||+.....+.+.+++    . |+|+|+|||+++.+.
T Consensus       135 ---------~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~  203 (362)
T TIGR03258       135 ---------PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL  203 (362)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence                     679999999999999999999999999999999999999988877653    3 789999999998754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=5.3e-35  Score=257.15  Aligned_cols=176  Identities=22%  Similarity=0.208  Sum_probs=144.3

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||++++| +++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 i~~~~~~~~~~~-~~--------~l~~vs~~i~~g-~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   51 (211)
T cd03264           1 LQLENLTKRYGK-KR--------ALDGVSLTLGPG-MYGLL--------GPNGAGKTTLMRI-------L----ATLTPP   51 (211)
T ss_pred             CEEEEEEEEECC-EE--------EEcceeEEEcCC-cEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999953 33        899999999999 99999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|+|...          .++.++|+||++.++. .|+.||+.+....... ......+++.++++.+++.+..+++   
T Consensus        52 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---  127 (211)
T cd03264          52 SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKK---  127 (211)
T ss_pred             CccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCc---
Confidence            99998632          1457999999998876 4999999764211000 0011134577889999997665543   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++.  +.|+|++||+++.+.
T Consensus       128 ------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~  193 (211)
T cd03264         128 ------IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE  193 (211)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence                  6789999999999999999999999999999999999999999988753  689999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=4.9e-34  Score=258.73  Aligned_cols=186  Identities=20%  Similarity=0.203  Sum_probs=155.2

Q ss_pred             cCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         77 RNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        77 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      ..+.++++|+++.|+.....       +++|+||+|++|++++|+        |+|  ||  |+++       +    +|
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~-------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G   69 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKP-------VLKHVKAYIKPGQKVGIC--------GRTGSGKSSLSLA-------F----FR   69 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCc-------ceeEEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hc
Confidence            45679999999999753222       899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +++|++|+|...           .++.++|+||++.++.+|+++|+....        ......+.++++.+++.+.++.
T Consensus        70 l~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~--------~~~~~~~~~~l~~~~l~~~~~~  141 (257)
T cd03288          70 MVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC--------KCTDDRLWEALEIAQLKNMVKS  141 (257)
T ss_pred             ccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC--------CCCHHHHHHHHHHhCcHHHHhh
Confidence            999999997531           245799999999988889999986431        1124456677777888777665


Q ss_pred             -cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        222 -EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 -~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                       +.|+++..+ ++.+||+|||||++|||||+++|+++||||||++||+.+++.+.+.+++  .+.|+|++||+++.+..
T Consensus       142 ~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~  220 (257)
T cd03288         142 LPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD  220 (257)
T ss_pred             cccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh
Confidence             446777654 7789999999999999999999999999999999999999999888775  48999999999987653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=6.5e-35  Score=270.65  Aligned_cols=178  Identities=22%  Similarity=0.232  Sum_probs=145.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         4 ~i~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~l~--------G~NGaGKSTLl~~-------l----~Gl~~   55 (303)
T TIGR01288         4 AIDLVGVSKSYGD-KV--------VVNDLSFTIARGECFGLL--------GPNGAGKSTIARM-------L----LGMIS   55 (303)
T ss_pred             EEEEEeEEEEeCC-eE--------EEcceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .+++++|+||++.++. .|++||+.+....... ......+.+.++++.+++.+..+++  
T Consensus        56 p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~~~~~~--  132 (303)
T TIGR01288        56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM-STREIEAVIPSLLEFARLESKADVR--  132 (303)
T ss_pred             CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCChhHhcCc--
Confidence            999998532          2467999999998764 6999999753211000 0000123466788888887665543  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                             +.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++   .|+|||++||+++.+.
T Consensus       133 -------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~  199 (303)
T TIGR01288       133 -------VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE  199 (303)
T ss_pred             -------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence                   679999999999999999999999999999999999999999888765   3899999999998764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=4.2e-34  Score=252.79  Aligned_cols=180  Identities=18%  Similarity=0.226  Sum_probs=146.1

Q ss_pred             EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      .+.|+.|.|+.+..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|+
T Consensus         2 ~~~~~~~~~~~~~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~~   54 (218)
T cd03290           2 QVTNGYFSWGSGLA--------TLSNINIRIPTGQLTMIV--------GQVGCGKSSLLLA-------I----LGEMQTL   54 (218)
T ss_pred             eeeeeEEecCCCCc--------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCCC
Confidence            46788999975444        999999999999999999        999  99  9999       8    9999999


Q ss_pred             Cceeecc---------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400        158 GGTVTKP---------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-  221 (298)
Q Consensus       158 ~G~i~~~---------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-  221 (298)
                      +|+|...               .++.++|++|++.++..|++||+.++..        ...++..++++.+++.+.++. 
T Consensus        55 ~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~--------~~~~~~~~~~~~~~l~~~~~~~  126 (218)
T cd03290          55 EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP--------FNKQRYKAVTDACSLQPDIDLL  126 (218)
T ss_pred             CCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCc--------CCHHHHHHHHHHhCcHHHHHhC
Confidence            9987531               1356999999998888899999987531        123445667788888765543 


Q ss_pred             cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH--H---HHhcCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE--Y---CREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~--~---l~~~~~TiIiitH~l~~~~  295 (298)
                      +.++++..+ ++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+  +   +++.+.|+|++||+++.+.
T Consensus       127 ~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~  206 (218)
T cd03290         127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP  206 (218)
T ss_pred             cCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence            445555433 678999999999999999999999999999999999998887766  3   3345799999999998765


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       207 ~  207 (218)
T cd03290         207 H  207 (218)
T ss_pred             h
Confidence            4

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.9e-35  Score=261.57  Aligned_cols=179  Identities=24%  Similarity=0.218  Sum_probs=144.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   52 (247)
T TIGR00972         1 AIEIENLNLFYGE-KE--------ALKNINLDIPKNQVTALI--------GPSGCGKSTLLRS-------L----NRMND   52 (247)
T ss_pred             CEEEEEEEEEECC-ee--------eecceeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cC-----Cceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-
Q psy11400        156 LF-----GGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-  216 (298)
Q Consensus       156 ~~-----~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-  216 (298)
                      |+     +|+|...             .++.++|+||++.++..|++||+.++.............+.+.++++.+++. 
T Consensus        53 p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  132 (247)
T TIGR00972        53 LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWD  132 (247)
T ss_pred             CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence            88     9987531             1356999999998877999999987431110000011134577889999987 


Q ss_pred             ---hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCc
Q psy11400        217 ---YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRK  291 (298)
Q Consensus       217 ---~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l  291 (298)
                         +..++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++.  ++|+|++||++
T Consensus       133 ~~~~~~~~---------~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~  203 (247)
T TIGR00972       133 EVKDRLHD---------SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM  203 (247)
T ss_pred             chhhHhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence               33333         36799999999999999999999999999999999999999999887652  58999999999


Q ss_pred             chhh
Q psy11400        292 SLWT  295 (298)
Q Consensus       292 ~~~~  295 (298)
                      +.+.
T Consensus       204 ~~~~  207 (247)
T TIGR00972       204 QQAA  207 (247)
T ss_pred             HHHH
Confidence            8664

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.2e-34  Score=256.53  Aligned_cols=175  Identities=21%  Similarity=0.286  Sum_probs=140.7

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|++ ..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+.+|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   52 (222)
T cd03224           1 LEVENLNAGYGK-SQ--------ILFGVSLTVPEGEIVALL--------GRNGAGKTTLLKT-------I----MGLLPP   52 (222)
T ss_pred             CEEeeEEeecCC-ee--------EeeeeeEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc-CCchhhhhc
Q psy11400        157 FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV-QLGYILNRE  222 (298)
Q Consensus       157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~~  222 (298)
                      ++|+|...            .++.++|+||++.++. .|++||+.++.....   .....+.+.++++.+ ++.+..++ 
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~-  128 (222)
T cd03224          53 RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQ-  128 (222)
T ss_pred             CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhC-
Confidence            99997531            1346999999998776 499999987532110   011233455666666 35444333 


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                              .+.+||||||||++|||||+.+|+++||||||++||+.++..+.+++++   .++|+|++||+++.+.
T Consensus       129 --------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  196 (222)
T cd03224         129 --------LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL  196 (222)
T ss_pred             --------chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                    3678999999999999999999999999999999999999999988765   3789999999998754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=3e-34  Score=256.85  Aligned_cols=182  Identities=24%  Similarity=0.333  Sum_probs=148.7

Q ss_pred             EEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         81 RGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        81 i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++++|+++.|+... .+       +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 l~i~~l~~~~~~~~~~~-------~l~~i~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~   54 (238)
T cd03249           1 IEFKNVSFRYPSRPDVP-------ILKGLSLTIPPGKTVALV--------GSSGCGKSTVVSL-------L----ERFYD   54 (238)
T ss_pred             CeEEEEEEecCCCCCcc-------ceeceEEEecCCCEEEEE--------eCCCCCHHHHHHH-------H----hccCC
Confidence            46899999996432 22       899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC-----------CCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTKPP-----------RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                      |++|+|....           ++.++|+||++.++..|++||+.++..       ....+++.+.++..++.++.+. +.
T Consensus        55 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~  127 (238)
T cd03249          55 PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-------DATDEEVEEAAKKANIHDFIMSLPD  127 (238)
T ss_pred             CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCC-------CCCHHHHHHHHHHcChHHHHHhhcc
Confidence            9999985321           356999999998887899999987542       1123445566677777666544 44


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      ++++..+ ++.+||||||||++|||||+.+|+++||||||++||+...+.+.+.+++  .++|+|++||+++.+.
T Consensus       128 ~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~  202 (238)
T cd03249         128 GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR  202 (238)
T ss_pred             ccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence            5555433 6789999999999999999999999999999999999999999988765  4789999999998765

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-34  Score=266.45  Aligned_cols=179  Identities=17%  Similarity=0.209  Sum_probs=146.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++++|+.+..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.+
T Consensus         5 ~l~~~~l~~~~~~~~~--------~l~~vs~~i~~Ge~~~i~--------G~nGaGKSTLl~~-------i----~Gl~~   57 (283)
T PRK13636          5 ILKVEELNYNYSDGTH--------ALKGININIKKGEVTAIL--------GGNGAGKSTLFQN-------L----NGILK   57 (283)
T ss_pred             eEEEEeEEEEeCCCCe--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            6899999999964344        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...             .++.++|+||++  .++..|++||+.++...... ......+.+.++++.+++.++.+
T Consensus        58 p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~  136 (283)
T PRK13636         58 PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL-PEDEVRKRVDNALKRTGIEHLKD  136 (283)
T ss_pred             CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHCCChhhhh
Confidence            999997531             135699999998  45678999999875311000 00011245788889999977665


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++    .|+|||++||+++.+.
T Consensus       137 ~~---------~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~  206 (283)
T PRK13636        137 KP---------THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP  206 (283)
T ss_pred             CC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            53         679999999999999999999999999999999999999988887754    3899999999998765

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.5e-34  Score=256.76  Aligned_cols=181  Identities=27%  Similarity=0.355  Sum_probs=140.5

Q ss_pred             cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +++++||++.|+...  .+       +++|+||++++|++++|+        |||  ||  |+++       +    +|+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~-------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~   54 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVK-------ALDDVSFSIKKGETLGLV--------GESGSGKSTLARA-------I----LGL   54 (228)
T ss_pred             CeEEEeeeEeccCCCccee-------eecCceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            378999999996431  12       899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc--------------CCCcEEEEcCcC--CCC-CCCHHHHHccCCcchhhhhcCCCHHH-HHHHHHHcCC
Q psy11400        154 WPLFGGTVTKP--------------PRGKLFYVPQRP--YMT-LGTLRDQVIYPHTKEDMIQKGITDAD-LTEYLQKVQL  215 (298)
Q Consensus       154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~-i~~~l~~~~l  215 (298)
                      ++|++|+|...              .++.++|+||++  .++ ..|+++|+.++............... ..++++.+++
T Consensus        55 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  134 (228)
T cd03257          55 LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGL  134 (228)
T ss_pred             CCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCC
Confidence            99999987521              135799999998  344 47999999764211000000001112 2467788888


Q ss_pred             c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecC
Q psy11400        216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHR  290 (298)
Q Consensus       216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~  290 (298)
                      . ...++         .+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++   . ++|||++||+
T Consensus       135 ~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~  205 (228)
T cd03257         135 PEEVLNR---------YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD  205 (228)
T ss_pred             ChhHhhC---------CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4 44444         2678999999999999999999999999999999999999999888764   2 7999999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      ++.+.
T Consensus       206 ~~~~~  210 (228)
T cd03257         206 LGVVA  210 (228)
T ss_pred             HHHHH
Confidence            98765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-34  Score=267.25  Aligned_cols=180  Identities=17%  Similarity=0.178  Sum_probs=144.9

Q ss_pred             cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      .++++||++.|+.+.   .+       +|+|+||+|++||+++|+        |+|  ||  |+++       |    .|
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~-------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------L----~G   55 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQ-------AIHDVNTEFEQGKYYAIV--------GQTGSGKSTLIQN-------I----NA   55 (286)
T ss_pred             EEEEEEEEEEECCCCccccC-------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence            378999999996432   12       999999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        153 LWPLFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       153 l~~~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      +++|++|+|...               .+++|+||||+|  .++..|+.||+.++...... ......+.+.++++.+++
T Consensus        56 l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~~gL  134 (286)
T PRK13646         56 LLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKM-NLDEVKNYAHRLLMDLGF  134 (286)
T ss_pred             CCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHcCC
Confidence            999999987421               145799999997  46777999999875311000 001123456788888888


Q ss_pred             c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      . +..++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++    .|+|||+|||+
T Consensus       135 ~~~~~~~---------~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~  205 (286)
T PRK13646        135 SRDVMSQ---------SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD  205 (286)
T ss_pred             ChhhhhC---------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            6 44444         3679999999999999999999999999999999999999999888764    38999999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      ++.+.
T Consensus       206 ~~~~~  210 (286)
T PRK13646        206 MNEVA  210 (286)
T ss_pred             HHHHH
Confidence            98764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=3e-34  Score=251.04  Aligned_cols=170  Identities=24%  Similarity=0.269  Sum_probs=143.5

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~i~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (201)
T cd03231           1 LEADELTCERDG-RA--------LFSGLSFTLAAGEALQVT--------GPNGSGKTTLLRI-------L----AGLSPP   52 (201)
T ss_pred             CEEEEEEEEeCC-ce--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|+|...          .+++++|+||++.++ ..|++||+.+...       ....+++.++++.+++.++.+++   
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~---  122 (201)
T cd03231          53 LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-------DHSDEQVEEALARVGLNGFEDRP---  122 (201)
T ss_pred             CCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcc-------cccHHHHHHHHHHcCChhhhcCc---
Confidence            99998531          235799999999775 5799999987531       12456788899999997655443   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                            +.+||||||||++|||||+.+|+++||||||++||+...+.+.+.+++   .+.|+|++||+....
T Consensus       123 ------~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~  188 (201)
T cd03231         123 ------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL  188 (201)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh
Confidence                  678999999999999999999999999999999999999999988764   389999999987643

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=9.3e-35  Score=255.42  Aligned_cols=177  Identities=21%  Similarity=0.260  Sum_probs=144.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+.+|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~v~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (210)
T cd03269           1 LEVENVTKRFGR-VT--------ALDDISFSVEKGEIFGLL--------GPNGAGKTTTIRM-------I----LGIILP   52 (210)
T ss_pred             CEEEEEEEEECC-EE--------EEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999953 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400        157 FGGTVTKP-------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV  228 (298)
Q Consensus       157 ~~G~i~~~-------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~  228 (298)
                      ++|+|...       .++.++|+||++.++. .|++||+.+....... ......+++.++++.+++.+..+++      
T Consensus        53 ~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~------  125 (210)
T cd03269          53 DSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKR------  125 (210)
T ss_pred             CceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCc------
Confidence            99998643       2457999999998776 5999999764211000 0011234677889999987655543      


Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .++|+|++||+++.+.
T Consensus       126 ---~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~  192 (210)
T cd03269         126 ---VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE  192 (210)
T ss_pred             ---HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence               578999999999999999999999999999999999999999888765   3789999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.1e-34  Score=276.08  Aligned_cols=179  Identities=22%  Similarity=0.235  Sum_probs=148.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|++ ..        +++|+||++++||+++|+        |||  ||  |+++       |    +|+.
T Consensus        13 ~~L~l~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~Ll--------GpsGsGKSTLLr~-------I----aGl~   64 (375)
T PRK09452         13 PLVELRGISKSFDG-KE--------VISNLDLTINNGEFLTLL--------GPSGCGKTTVLRL-------I----AGFE   64 (375)
T ss_pred             ceEEEEEEEEEECC-eE--------EEeeeEEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            36899999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        155 PLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       155 ~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      +|++|+|...         .++.|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.++.  
T Consensus        65 ~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~--  141 (375)
T PRK09452         65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRK--  141 (375)
T ss_pred             CCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCC--
Confidence            9999998531         2467999999998875 6999999987531100 0011134678889999998877663  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                             +.+|||||||||+|||||+.+|++|+||||||+||+..+..+.+.+++    .++|+|+|||++..+.
T Consensus       142 -------p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~  209 (375)
T PRK09452        142 -------PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL  209 (375)
T ss_pred             -------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                   679999999999999999999999999999999999999988877654    4899999999998754

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-34  Score=264.89  Aligned_cols=180  Identities=27%  Similarity=0.287  Sum_probs=147.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+....+       +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.+
T Consensus         5 ~l~~~~l~~~~~~~~~~-------~l~~vsl~i~~Ge~~~i~--------G~nGaGKSTLl~~-------i----~G~~~   58 (279)
T PRK13635          5 IIRVEHISFRYPDAATY-------ALKDVSFSVYEGEWVAIV--------GHNGSGKSTLAKL-------L----NGLLL   58 (279)
T ss_pred             eEEEEEEEEEeCCCCcc-------ceeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCC
Confidence            58999999999643322       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...           .++.|+|+||++  .++..|+.||+.++...... ......+++.++++.+++.++.+++
T Consensus        59 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~  137 (279)
T PRK13635         59 PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMVERVDQALRQVGMEDFLNRE  137 (279)
T ss_pred             CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCC-CHHHHHHHHHHHHHHcCChhhhhCC
Confidence            999998531           135699999998  35667999999875321100 0011134578889999998766653


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                               +..||||||||++|||||+.+|++|||||||++||+.+...+.+.+++    .++|||++||+++.+.
T Consensus       138 ---------~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~  205 (279)
T PRK13635        138 ---------PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA  205 (279)
T ss_pred             ---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence                     679999999999999999999999999999999999999999988764    2799999999998764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-34  Score=276.13  Aligned_cols=178  Identities=19%  Similarity=0.200  Sum_probs=146.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         3 ~l~i~~l~~~~~~-~~--------vl~~vsl~i~~Ge~~~l~--------G~nGsGKSTLL~~-------i----aGl~~   54 (369)
T PRK11000          3 SVTLRNVTKAYGD-VV--------ISKDINLDIHEGEFVVFV--------GPSGCGKSTLLRM-------I----AGLED   54 (369)
T ss_pred             EEEEEEEEEEeCC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence            4889999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .++.|+||||++.+|. .|++||+.|+...... ......+++.++++.+++.++.++.   
T Consensus        55 p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~---  130 (369)
T PRK11000         55 ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRK---  130 (369)
T ss_pred             CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCC---
Confidence            999998531         2457999999998875 6999999886421100 0011134678889999998766653   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+++    .+.|+|+|||+++.+.
T Consensus       131 ------~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~  198 (369)
T PRK11000        131 ------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM  198 (369)
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence                  679999999999999999999999999999999999999988877654    3899999999998654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=3.7e-34  Score=254.30  Aligned_cols=186  Identities=26%  Similarity=0.310  Sum_probs=144.1

Q ss_pred             CCcEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      .++++++|+++.|++.. .+       +++|+||+|++|++++|+        |||  ||  |+++       +    +|
T Consensus         9 ~~~l~~~~l~~~~~~~~~~~-------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G   62 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPDTL-------VLQDVSFTLHPGEVTALV--------GPSGSGKSTVVAL-------L----EN   62 (226)
T ss_pred             CceEEEEEEEEEeCCCCCCc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence            35799999999997532 22       899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +.+|++|+|...           .++.++|+||++.++..|++||+.++...       ....++.+..+..++..+++.
T Consensus        63 l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~-------~~~~~~~~~~~~~~~~~~l~~  135 (226)
T cd03248          63 FYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQS-------CSFECVKEAAQKAHAHSFISE  135 (226)
T ss_pred             CcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCC-------CCHHHHHHHHHHcCcHHHHHh
Confidence            999999997532           13569999999988888999999875421       111122222223333333333


Q ss_pred             c-CCcccc-cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        222 E-KGWDTV-ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 ~-~g~d~~-~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      . .|+++. ...+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++  .+.|+|++||+++.+..
T Consensus       136 l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  214 (226)
T cd03248         136 LASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER  214 (226)
T ss_pred             ccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence            1 133332 235789999999999999999999999999999999999999999988875  36899999999987753

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.2e-34  Score=252.34  Aligned_cols=176  Identities=21%  Similarity=0.217  Sum_probs=147.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+. ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~   52 (204)
T PRK13538          1 MLEARNLACERDE-RI--------LFSGLSFTLNAGELVQIE--------GPNGAGKTSLLRI-------L----AGLAR   52 (204)
T ss_pred             CeEEEEEEEEECC-EE--------EEecceEEECCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .+++++|++|++.++. .|+.||+.++....    .....+++.++++.+++.++.+++  
T Consensus        53 p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~--  126 (204)
T PRK13538         53 PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH----GPGDDEALWEALAQVGLAGFEDVP--  126 (204)
T ss_pred             CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc----CccHHHHHHHHHHHcCCHHHhhCC--
Confidence            999997532          2457999999987764 69999998753111    112346788899999997665543  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                             +.+||||||||++|||||+++|+++||||||++||+.+.+.+.+++++   .+.|+|++||+++.+..
T Consensus       127 -------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        127 -------VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS  194 (204)
T ss_pred             -------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence                   679999999999999999999999999999999999999999888765   37899999999998754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.2e-34  Score=261.24  Aligned_cols=179  Identities=24%  Similarity=0.218  Sum_probs=144.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   54 (250)
T PRK11264          3 AIEVKNLVKKFHG-QT--------VLHGIDLEVKPGEVVAII--------GPSGSGKTTLLRC-------I----NLLEQ   54 (250)
T ss_pred             cEEEeceEEEECC-ee--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        156 LFGGTVTKP-------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       156 ~~~G~i~~~-------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      |++|+|...                   .++.++|+||++.++. .|+.||+.++.............+.+.++++.+++
T Consensus        55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl  134 (250)
T PRK11264         55 PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL  134 (250)
T ss_pred             CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            999987421                   1356999999998775 69999997642100000000112456778888888


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                      ....++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .+.|+|++||+++
T Consensus       135 ~~~~~~---------~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~  205 (250)
T PRK11264        135 AGKETS---------YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS  205 (250)
T ss_pred             cchhhC---------ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            765444         3679999999999999999999999999999999999999999887764   4899999999998


Q ss_pred             hhh
Q psy11400        293 LWT  295 (298)
Q Consensus       293 ~~~  295 (298)
                      .+.
T Consensus       206 ~~~  208 (250)
T PRK11264        206 FAR  208 (250)
T ss_pred             HHH
Confidence            764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4e-34  Score=249.93  Aligned_cols=174  Identities=19%  Similarity=0.220  Sum_probs=145.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++++|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ml~~~~l~~~~~~-~~--------il~~~s~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~   52 (200)
T PRK13540          1 MLDVIELDFDYHD-QP--------LLQQISFHLPAGGLLHLK--------GSNGAGKTTLLKL-------I----AGLLN   52 (200)
T ss_pred             CEEEEEEEEEeCC-ee--------EEeeeeEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|++...          .+++++|+||++.++ ..|+++|+.++...      ......+.++++.+++.+..+++  
T Consensus        53 ~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~--  124 (200)
T PRK13540         53 PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF------SPGAVGITELCRLFSLEHLIDYP--  124 (200)
T ss_pred             CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc------CcchHHHHHHHHHcCCchhhhCC--
Confidence            999987532          145799999999875 57999999875311      11234678889998887655543  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                             ..+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+.+.+..
T Consensus       125 -------~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  192 (200)
T PRK13540        125 -------CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK  192 (200)
T ss_pred             -------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence                   568999999999999999999999999999999999999999888775   48999999999987654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-34  Score=264.21  Aligned_cols=179  Identities=20%  Similarity=0.178  Sum_probs=145.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++++|+.+..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ml~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   53 (274)
T PRK13644          1 MIRLENVSYSYPDGTP--------ALENINLVIKKGEYIGII--------GKNGSGKSTLALH-------L----NGLLR   53 (274)
T ss_pred             CEEEEEEEEEcCCCCc--------eeeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            3789999999964333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |++|+|...            .++.++|+||+|.  ++..|+.||+.++..... .......+.+.++++.+++.+..++
T Consensus        54 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~  132 (274)
T PRK13644         54 PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHR  132 (274)
T ss_pred             CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcC
Confidence            999987421            1346999999985  456799999987531100 0001113457788899999776655


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +         +..||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .|.|+|++||+++.+.
T Consensus       133 ~---------~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~  200 (274)
T PRK13644        133 S---------PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH  200 (274)
T ss_pred             C---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence            3         679999999999999999999999999999999999999999888754   4899999999998764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2.4e-34  Score=275.47  Aligned_cols=180  Identities=21%  Similarity=0.238  Sum_probs=149.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++
T Consensus         3 ~L~~~nls~~y~~-~~--------vL~~vs~~i~~Geiv~li--------GpNGaGKSTLLk~-------L----aGll~   54 (402)
T PRK09536          3 MIDVSDLSVEFGD-TT--------VLDGVDLSVREGSLVGLV--------GPNGAGKTTLLRA-------I----NGTLT   54 (402)
T ss_pred             eEEEeeEEEEECC-EE--------EEEeeEEEECCCCEEEEE--------CCCCchHHHHHHH-------H----hcCCC
Confidence            5899999999963 34        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchh-hhh--cCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKED-MIQ--KGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~-~~~--~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...           .+++|+||+|++.+ +..|++||+.++..... ...  .....+.+.++++.+++.++.+
T Consensus        55 p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~  134 (402)
T PRK09536         55 PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD  134 (402)
T ss_pred             CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc
Confidence            999998531           24579999999976 56899999987642210 000  1112456889999999987776


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ++         +.+||||||||++|||||+++|++|||||||++||+..+..+++++++   .++|+|++||+++.+..
T Consensus       135 ~~---------~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~  204 (402)
T PRK09536        135 RP---------VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAAR  204 (402)
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            64         679999999999999999999999999999999999999988887765   37899999999998743

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.3e-34  Score=258.13  Aligned_cols=177  Identities=20%  Similarity=0.240  Sum_probs=142.9

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~p   52 (232)
T cd03218           1 LRAENLSKRYGK-RK--------VVNGVSLSVKQGEIVGLL--------GPNGAGKTTTFYM-------I----VGLVKP   52 (232)
T ss_pred             CeEEEEEEEeCC-EE--------eeccceeEecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        157 FGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      ++|+|...            .++.++|+||++.++.. |++||+.++..... .........+.++++.+++.+..++. 
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~-  130 (232)
T cd03218          53 DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG-LSKKEREEKLEELLEEFHITHLRKSK-  130 (232)
T ss_pred             CCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCC-
Confidence            99997531            12469999999988764 99999986431100 00001124567788888887655443 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                              +.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+++++   .++|+|++||+++.+.
T Consensus       131 --------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~  197 (232)
T cd03218         131 --------ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL  197 (232)
T ss_pred             --------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                    679999999999999999999999999999999999999998887764   4789999999997554

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.6e-34  Score=259.50  Aligned_cols=178  Identities=21%  Similarity=0.204  Sum_probs=143.7

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||+++|++...        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~~~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   53 (242)
T cd03295           1 IEFENVTKRYGGGKK--------AVNNLNLEIAKGEFLVLI--------GPSGSGKTTTMKM-------I----NRLIEP   53 (242)
T ss_pred             CEEEEEEEEeCCcce--------EeeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence            468999999964233        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch--hhhhc
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY--ILNRE  222 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~  222 (298)
                      ++|+|...           .++.++|+||++.++. .|++||+.++...... ......+.+.++++.+++..  +.++ 
T Consensus        54 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~-  131 (242)
T cd03295          54 TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW-PKEKIRERADELLALVGLDPAEFADR-  131 (242)
T ss_pred             CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCCcHHHHhc-
Confidence            99997531           1357999999998875 6999999864211000 00112345778899999874  4444 


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                              .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|+|+|++||+++.+.
T Consensus       132 --------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~  200 (242)
T cd03295         132 --------YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAF  200 (242)
T ss_pred             --------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence                    3679999999999999999999999999999999999999998887765    2799999999998653

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2e-34  Score=258.41  Aligned_cols=179  Identities=21%  Similarity=0.258  Sum_probs=144.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~-~~--------il~~~s~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~   52 (240)
T PRK09493          1 MIEFKNVSKHFGP-TQ--------VLHNIDLNIDQGEVVVII--------GPSGSGKSTLLRC-------I----NKLEE   52 (240)
T ss_pred             CEEEEeEEEEECC-eE--------EeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |++|+|...             .++.++|+||++.++. .|+++|+.++.............+.+.++++.+++.+..++
T Consensus        53 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  132 (240)
T PRK09493         53 ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH  132 (240)
T ss_pred             CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc
Confidence            999997521             1346999999997765 69999998742100000001123456788899988766554


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      .         +..||||||||++|||||+.+|+++||||||++||+.+...+.+++++   .++|+|++||+++.+.
T Consensus       133 ~---------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  200 (240)
T PRK09493        133 Y---------PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAE  200 (240)
T ss_pred             C---------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3         679999999999999999999999999999999999999999888754   4899999999998764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-34  Score=275.48  Aligned_cols=179  Identities=21%  Similarity=0.240  Sum_probs=147.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+.
T Consensus        18 ~~l~l~~v~~~~~~-~~--------~l~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------I----aGl~   69 (377)
T PRK11607         18 PLLEIRNLTKSFDG-QH--------AVDDVSLTIYKGEIFALL--------GASGCGKSTLLRM-------L----AGFE   69 (377)
T ss_pred             ceEEEEeEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            46999999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        155 PLFGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       155 ~~~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      +|++|+|..         +.++.||||||++.+|+ .|+.||+.|+...... ......+++.++++.+++.++.++.  
T Consensus        70 ~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~--  146 (377)
T PRK11607         70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRK--  146 (377)
T ss_pred             CCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC--
Confidence            999999853         12467999999998875 6999999987431100 0011234677889999998776653  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~  295 (298)
                             +.+|||||||||+|||||+.+|++|+||||||+||+..+..+.+.+    ++.+.|+|+|||+++.+.
T Consensus       147 -------~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~  214 (377)
T PRK11607        147 -------PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAM  214 (377)
T ss_pred             -------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence                   6799999999999999999999999999999999999988776544    445899999999998653

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=2.2e-34  Score=260.92  Aligned_cols=181  Identities=20%  Similarity=0.210  Sum_probs=146.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus         4 ~~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~   55 (257)
T PRK10619          4 NKLNVIDLHKRYGE-HE--------VLKGVSLQANAGDVISII--------GSSGSGKSTFLRC-------I----NFLE   55 (257)
T ss_pred             ccEEEeeeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            56999999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400        155 PLFGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEY  209 (298)
Q Consensus       155 ~~~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~  209 (298)
                      +|++|+|...                        .++.++|+||++.++. .|++||+.++.............+++.++
T Consensus        56 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~  135 (257)
T PRK10619         56 KPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKY  135 (257)
T ss_pred             CCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999987421                        1346999999998876 59999997632100000001123457788


Q ss_pred             HHHcCCchhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEE
Q psy11400        210 LQKVQLGYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLF  285 (298)
Q Consensus       210 l~~~~l~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiI  285 (298)
                      ++.+++.+.. ++         .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++   .|+|+|
T Consensus       136 l~~~gl~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tii  206 (257)
T PRK10619        136 LAKVGIDERAQGK---------YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV  206 (257)
T ss_pred             HHHcCCChhhhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            9999987653 33         3679999999999999999999999999999999999999999888664   389999


Q ss_pred             EEecCcchhhh
Q psy11400        286 TVSHRKSLWTH  296 (298)
Q Consensus       286 iitH~l~~~~~  296 (298)
                      +|||+++.+..
T Consensus       207 ivsH~~~~~~~  217 (257)
T PRK10619        207 VVTHEMGFARH  217 (257)
T ss_pred             EEeCCHHHHHH
Confidence            99999987653

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-34  Score=257.52  Aligned_cols=179  Identities=18%  Similarity=0.224  Sum_probs=144.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~~sl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~   54 (241)
T PRK10895          3 TLTAKNLAKAYKG-RR--------VVEDVSLTVNSGEIVGLL--------GPNGAGKTTTFYM-------V----VGIVP   54 (241)
T ss_pred             eEEEeCcEEEeCC-EE--------EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5889999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...            .++.++|+||++.++. .|+.||+.+................+.++++.+++.+..++ 
T Consensus        55 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-  133 (241)
T PRK10895         55 RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS-  133 (241)
T ss_pred             CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc-
Confidence            999997531            1356999999998776 59999998753211000011123457788888888765444 


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                              .+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++   .|.|+|++||+++.+.
T Consensus       134 --------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~  201 (241)
T PRK10895        134 --------MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETL  201 (241)
T ss_pred             --------chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHH
Confidence                    3679999999999999999999999999999999999999888777653   4899999999997553

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=2.1e-34  Score=257.75  Aligned_cols=178  Identities=21%  Similarity=0.316  Sum_probs=143.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++++|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   52 (236)
T TIGR03864         1 ALEVAGLSFAYGA-RR--------ALDDVSFTVRPGEFVALL--------GPNGAGKSTLFSL-------L----TRLYV   52 (236)
T ss_pred             CEEEEeeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .++.++|+||++.+ +..|+++|+.++...... ......+.+.++++.+++.+..++   
T Consensus        53 p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~---  128 (236)
T TIGR03864        53 AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL-SRAEARERIAALLARLGLAERADD---  128 (236)
T ss_pred             CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhcC---
Confidence            999997531          12469999999977 467999999764311100 000123456788888888765544   


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .+.|+|++||+++.+.
T Consensus       129 ------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  197 (236)
T TIGR03864       129 ------KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE  197 (236)
T ss_pred             ------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence                  3679999999999999999999999999999999999999999887754    3789999999998764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-34  Score=262.03  Aligned_cols=181  Identities=19%  Similarity=0.238  Sum_probs=146.3

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|+++..+       +++|+||+|++|++++|+        |||  ||  |+++       +    +|++
T Consensus         6 ~~l~~~nl~~~~~~~~~~-------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~   59 (271)
T PRK13632          6 VMIKVENVSFSYPNSENN-------ALKNVSFEINEGEYVAIL--------GHNGSGKSTISKI-------L----TGLL   59 (271)
T ss_pred             eEEEEEeEEEEcCCCCcc-------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            368999999999643322       999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|++|+|...           .++.++|+||++  .++..|++||+.++...... ......+.+.++++.+++.++.++
T Consensus        60 ~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~  138 (271)
T PRK13632         60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKV-PPKKMKDIIDDLAKKVGMEDYLDK  138 (271)
T ss_pred             CCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhC
Confidence            9999997521           245799999998  35567999999875311000 000112346788899999776655


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~~~  295 (298)
                      .         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++.    ++|+|++||+++.+.
T Consensus       139 ~---------~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  207 (271)
T PRK13632        139 E---------PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI  207 (271)
T ss_pred             C---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh
Confidence            3         6799999999999999999999999999999999999999999887652    489999999998764

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=7.6e-34  Score=256.89  Aligned_cols=171  Identities=27%  Similarity=0.382  Sum_probs=146.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~~~~-~~--------vl~~vs~~i~~Ge~~~I~--------G~NGsGKSTLl~~-------i----~Gl~~   55 (251)
T PRK09544          4 LVSLENVSVSFGQ-RR--------VLSDVSLELKPGKILTLL--------GPNGAGKSTLVRV-------V----LGLVA   55 (251)
T ss_pred             EEEEeceEEEECC-ce--------EEEeEEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCC---CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTL---GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWI  232 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~  232 (298)
                      |++|+|....+..++|+||++.++.   .|+.+++.+..        ...++++.++++.+++.+..+++         +
T Consensus        56 p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~---------~  118 (251)
T PRK09544         56 PDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRP--------GTKKEDILPALKRVQAGHLIDAP---------M  118 (251)
T ss_pred             CCceEEEECCccCEEEeccccccccccChhHHHHHhccc--------cccHHHHHHHHHHcCChHHHhCC---------h
Confidence            9999998766668999999987653   37888775421        12345678899999998766553         6


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      .+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||+++.+.
T Consensus       119 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~  185 (251)
T PRK09544        119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM  185 (251)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            79999999999999999999999999999999999999998887754    2899999999998764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-34  Score=264.54  Aligned_cols=180  Identities=21%  Similarity=0.220  Sum_probs=144.5

Q ss_pred             cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      .++++|+++.|+.+.   .+       +++|+||+|++||+++|+        |||  ||  |+++       |    +|
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~ii--------G~NGaGKSTLl~~-------l----~G   55 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKK-------GLDNISFELEEGSFVALV--------GHTGSGKSTLMQH-------F----NA   55 (287)
T ss_pred             EEEEEEEEEEcCCCCCcccc-------ceeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence            478999999996321   22       899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        153 LWPLFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       153 l~~~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      +.+|++|+|...               .++.|+|+||+|  .++..|+.||+.++...... ......+.+.++++.+++
T Consensus        56 l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL  134 (287)
T PRK13641         56 LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGF-SEDEAKEKALKWLKKVGL  134 (287)
T ss_pred             CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC
Confidence            999999987531               124699999998  46678999999864211000 001113456788999998


Q ss_pred             c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400        216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK  291 (298)
Q Consensus       216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l  291 (298)
                      . ++.+++         +.+||||||||++|||||+.+|++|||||||++||+.....+.+.+++   .|.|||++||++
T Consensus       135 ~~~~~~~~---------~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~  205 (287)
T PRK13641        135 SEDLISKS---------PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM  205 (287)
T ss_pred             ChhHhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            6 455543         679999999999999999999999999999999999999988887764   479999999999


Q ss_pred             chhh
Q psy11400        292 SLWT  295 (298)
Q Consensus       292 ~~~~  295 (298)
                      +.+.
T Consensus       206 ~~~~  209 (287)
T PRK13641        206 DDVA  209 (287)
T ss_pred             HHHH
Confidence            8764

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=1.6e-34  Score=252.86  Aligned_cols=175  Identities=24%  Similarity=0.251  Sum_probs=142.6

Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      ++||++.|++ ..        +++|+||++++||+++|+        |||  ||  |+++       +    +|+++|++
T Consensus         1 i~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~~~   52 (206)
T TIGR03608         1 LKNISKKFGD-KI--------ILDDLNLTIEKGKMYAII--------GESGSGKSTLLNI-------I----GLLEKFDS   52 (206)
T ss_pred             CcceEEEECC-EE--------EEeceEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCC
Confidence            4689999963 33        899999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        159 GTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       159 G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |+|...               .++.++|++|++.++. .|++||+.++..... .......+++.++++.+++.+..++.
T Consensus        53 G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~  131 (206)
T TIGR03608        53 GQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQK  131 (206)
T ss_pred             eEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCC
Confidence            987421               1346999999998875 699999987421100 00111235677889999987665543


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+++.+.
T Consensus       132 ---------~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  198 (206)
T TIGR03608       132 ---------IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK  198 (206)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence                     578999999999999999999999999999999999999999988865   3799999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=259.28  Aligned_cols=184  Identities=22%  Similarity=0.194  Sum_probs=143.7

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|++
T Consensus         6 ~~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   57 (254)
T PRK14273          6 AIIETENLNLFYTD-FK--------ALNNINIKILKNSITALI--------GPSGCGKSTFLRT-------L----NRMN   57 (254)
T ss_pred             ceEEEeeeEEEeCC-ce--------eecceeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence            36899999999963 33        899999999999999999        999  99  9999       8    8988


Q ss_pred             cc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 PL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +|     ++|+|...             .++.++|+||++.++..|++||+.++.............+.+.++++.+++.
T Consensus        58 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  137 (254)
T PRK14273         58 DLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW  137 (254)
T ss_pred             cCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCc
Confidence            86     48887421             1456999999998888999999987531110000001234567788888874


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~  294 (298)
                      +.+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+
T Consensus       138 ~~l~~-----~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~  212 (254)
T PRK14273        138 NEVKD-----KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA  212 (254)
T ss_pred             hhhHH-----HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            32110     01124679999999999999999999999999999999999999999888765  368999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       213 ~  213 (254)
T PRK14273        213 G  213 (254)
T ss_pred             H
Confidence            4

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=5.3e-34  Score=250.80  Aligned_cols=175  Identities=19%  Similarity=0.161  Sum_probs=142.8

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ .         . .|+||+|++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 i~~~~l~~~~~~-~---------~-~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~gl~~~   50 (211)
T cd03298           1 VRLDKIRFSYGE-Q---------P-MHFDLTFAQGEITAIV--------GPSGSGKSTLLNL-------I----AGFETP   50 (211)
T ss_pred             CEEEeEEEEeCC-E---------e-cceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999952 2         2 3999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...         .++.++|+||++.++. .|++||+.++...... .....++++.++++.+++.+..+++    
T Consensus        51 ~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~----  125 (211)
T cd03298          51 QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAGLEKRL----  125 (211)
T ss_pred             CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHHHHhCC----
Confidence            99997532         1356999999998876 5999999875421100 0011245678899999997666553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.++..+.+++++    .++|+|++||+++.+.
T Consensus       126 -----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  193 (211)
T cd03298         126 -----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK  193 (211)
T ss_pred             -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence                 679999999999999999999999999999999999999999888764    3799999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-34  Score=257.27  Aligned_cols=179  Identities=26%  Similarity=0.261  Sum_probs=144.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+. ..        +++|+||++++||+++|+        |||  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   53 (242)
T PRK11124          2 SIQLNGINCFYGA-HQ--------ALFDITLDCPQGETLVLL--------GPSGAGKSSLLRV-------L----NLLEM   53 (242)
T ss_pred             EEEEEeeEEEECC-ee--------eEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 LFGGTVTKP-----------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~~~G~i~~~-----------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |++|+|...                 .+++++|+||++.++. .|+.||+.+..............+++.++++.+++..
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  133 (242)
T PRK11124         54 PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP  133 (242)
T ss_pred             CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence            999997531                 1346999999998875 5999999742110000000011345677888888876


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      +.++.         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .++|+|++||+++.+
T Consensus       134 ~~~~~---------~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~  204 (242)
T PRK11124        134 YADRF---------PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA  204 (242)
T ss_pred             hhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            66553         679999999999999999999999999999999999999999888764   489999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       205 ~  205 (242)
T PRK11124        205 R  205 (242)
T ss_pred             H
Confidence            4

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-34  Score=262.90  Aligned_cols=183  Identities=21%  Similarity=0.231  Sum_probs=143.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||++.|+....    ...++++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~~~~----~~~~~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~   58 (280)
T PRK13649          2 GINLQNVSYTYQAGTP----FEGRALFDVNLTIEDGSYTAFI--------GHTGSGKSTIMQL-------L----NGLHV   58 (280)
T ss_pred             eEEEEEEEEEcCCCCc----cccceeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999964320    0001899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-
Q psy11400        156 LFGGTVTKP---------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-  217 (298)
Q Consensus       156 ~~~G~i~~~---------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-  217 (298)
                      |++|+|...               .++.|+|+||++  .++..|++||+.++...... ......+.+.++++.+++.. 
T Consensus        59 p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~  137 (280)
T PRK13649         59 PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGV-SQEEAEALAREKLALVGISES  137 (280)
T ss_pred             CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCChh
Confidence            999997521               134699999997  56778999999864211000 00001234667788888863 


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      ..++         .+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++   .++|||++||+++.+
T Consensus       138 ~~~~---------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~  208 (280)
T PRK13649        138 LFEK---------NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV  208 (280)
T ss_pred             hhhC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence            4443         3679999999999999999999999999999999999999999888765   379999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       209 ~  209 (280)
T PRK13649        209 A  209 (280)
T ss_pred             H
Confidence            4

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=3.2e-34  Score=261.11  Aligned_cols=181  Identities=23%  Similarity=0.233  Sum_probs=143.3

Q ss_pred             cEEEeeeeEecCCC-------CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccc
Q psy11400         80 LRGRLGITLGLRSG-------GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGT  148 (298)
Q Consensus        80 ~i~~~~v~~~~~~~-------~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~  148 (298)
                      +++++||++.|+.+       ..       .+++|+||+|++||+++|+        |+|  ||  |+++       +  
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~-------~il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l--   57 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRA-------PVLTNVSLSIEEGETVGLL--------GRSGCGKSTLARL-------L--   57 (265)
T ss_pred             eEEEEeEEEEeccCccccccCce-------EEeeCceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H--
Confidence            47899999999632       12       2899999999999999999        999  99  9999       8  


Q ss_pred             ccccccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400        149 LRDQLWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ  211 (298)
Q Consensus       149 ~~~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~  211 (298)
                        +|+++|++|+|...              .++.|+|+||++.  ++ ..|++||+.++.............+++.++++
T Consensus        58 --~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~  135 (265)
T TIGR02769        58 --LGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLD  135 (265)
T ss_pred             --hCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              99999999997521              1346999999973  43 46999998754210000001112356778899


Q ss_pred             HcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEE
Q psy11400        212 KVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFT  286 (298)
Q Consensus       212 ~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIi  286 (298)
                      .+++. ...+++         +.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++    .++|+|+
T Consensus       136 ~~gl~~~~~~~~---------~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii  206 (265)
T TIGR02769       136 MVGLRSEDADKL---------PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF  206 (265)
T ss_pred             HcCCChhhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence            99985 444442         678999999999999999999999999999999999999888887764    3899999


Q ss_pred             EecCcchhh
Q psy11400        287 VSHRKSLWT  295 (298)
Q Consensus       287 itH~l~~~~  295 (298)
                      +||+++.+.
T Consensus       207 vsH~~~~~~  215 (265)
T TIGR02769       207 ITHDLRLVQ  215 (265)
T ss_pred             EeCCHHHHH
Confidence            999998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=7.3e-34  Score=254.91  Aligned_cols=180  Identities=17%  Similarity=0.159  Sum_probs=146.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~i~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~   53 (242)
T TIGR03411         2 ILYLEGLSVSFDG-FK--------ALNDLSLYVDPGELRVII--------GPNGAGKTTMMDV-------I----TGKTR   53 (242)
T ss_pred             eEEEEeeEEEcCC-eE--------EeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhh-------hhcCCCHHHHHHHHHHcCC
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDM-------IQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~-------~~~~~~~~~i~~~l~~~~l  215 (298)
                      |++|+|...            .+..++|+||++.++.. |++||+.++......       .......+++.++++.+++
T Consensus        54 p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  133 (242)
T TIGR03411        54 PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL  133 (242)
T ss_pred             CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC
Confidence            999987531            12459999999988764 999999875321100       0001123467788888888


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      .+..++         .+.+||||||||++|||||+.+|++++|||||++||+.+...+.+++++  .++|+|++||+++.
T Consensus       134 ~~~~~~---------~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  204 (242)
T TIGR03411       134 ADEADR---------LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF  204 (242)
T ss_pred             chhhcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            765544         3679999999999999999999999999999999999999999998875  36899999999987


Q ss_pred             hhh
Q psy11400        294 WTH  296 (298)
Q Consensus       294 ~~~  296 (298)
                      +..
T Consensus       205 ~~~  207 (242)
T TIGR03411       205 VRS  207 (242)
T ss_pred             HHH
Confidence            753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-34  Score=261.90  Aligned_cols=186  Identities=22%  Similarity=0.196  Sum_probs=147.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++... .+  ...+|+|+||+|++||+++|+        |+|  ||  |+++       +    .|++
T Consensus         3 ~~l~~~~l~~~~~~~~~-~~--~~~vl~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~   60 (280)
T PRK13633          3 EMIKCKNVSYKYESNEE-ST--EKLALDDVNLEVKKGEFLVIL--------GRNGSGKSTIAKH-------M----NALL   60 (280)
T ss_pred             ceEEEeeeEEEcCCCCC-CC--CcceeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            36899999999974210 00  001999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        155 PLFGGTVTKP------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       155 ~~~~G~i~~~------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      +|++|+|...            .++.++|+||+|.  ++..|+.+|+.++...... .....++.+.++++.+++.++.+
T Consensus        61 ~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~  139 (280)
T PRK13633         61 IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI-PPEEIRERVDESLKKVGMYEYRR  139 (280)
T ss_pred             CCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHCCCHhHhh
Confidence            9999987521            1457999999984  5556899999875321100 01112356788899999987766


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      ++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|+|+|++||+++.+..
T Consensus       140 ~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~  210 (280)
T PRK13633        140 HA---------PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE  210 (280)
T ss_pred             CC---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence            53         679999999999999999999999999999999999999999888764    38999999999987653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-34  Score=258.31  Aligned_cols=184  Identities=18%  Similarity=0.184  Sum_probs=143.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||+++|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus         5 ~~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   56 (253)
T PRK14242          5 PKMEARGLSFFYGD-FQ--------ALHDISLEFEQNQVTALI--------GPSGCGKSTFLRC-------L----NRMN   56 (253)
T ss_pred             cEEEEeeeEEEECC-ee--------eecceeEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhc
Confidence            35899999999963 33        899999999999999999        999  99  9999       7    8875


Q ss_pred             c-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 P-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +     |++|+|...             .++.++|+||++.++..|++||+.++.............+++.++++.+++.
T Consensus        57 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  136 (253)
T PRK14242         57 DLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALW  136 (253)
T ss_pred             ccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc
Confidence            3     578987421             1357999999998887899999987531100000001234577788888885


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~  294 (298)
                      +.+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|||++||+++.+
T Consensus       137 ~~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~  211 (253)
T PRK14242        137 DEVKD-----RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA  211 (253)
T ss_pred             hhhhH-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence            42211     01123679999999999999999999999999999999999999999888775  368999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       212 ~  212 (253)
T PRK14242        212 A  212 (253)
T ss_pred             H
Confidence            4

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=3.3e-34  Score=269.75  Aligned_cols=179  Identities=21%  Similarity=0.215  Sum_probs=146.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+|+++||++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    .|++
T Consensus        40 ~~i~i~nl~k~y~~-~~--------~l~~is~~i~~Gei~gLl--------GpNGaGKSTLl~~-------L----~Gl~   91 (340)
T PRK13536         40 VAIDLAGVSKSYGD-KA--------VVNGLSFTVASGECFGLL--------GPNGAGKSTIARM-------I----LGMT   91 (340)
T ss_pred             eeEEEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCC
Confidence            36999999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        155 PLFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      +|++|+|...          .++.|||+||++.++ ..|+.||+.+....... ......+.+.++++.+++.+..+++ 
T Consensus        92 ~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~L~~~~~~~-  169 (340)
T PRK13536         92 SPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-STREIEAVIPSLLEFARLESKADAR-  169 (340)
T ss_pred             CCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhCCC-
Confidence            9999998531          246799999999875 56999999753211100 0001123466788888887665543 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                              +.+||||||||++|||||+++|+++||||||+|||+.++..+++++++   .|+|||++||+++.+.
T Consensus       170 --------~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~  236 (340)
T PRK13536        170 --------VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE  236 (340)
T ss_pred             --------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence                    679999999999999999999999999999999999999999988765   4899999999999764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=7.1e-34  Score=249.76  Aligned_cols=175  Identities=23%  Similarity=0.254  Sum_probs=145.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    .|+++
T Consensus         2 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   53 (207)
T PRK13539          2 MLEGEDLACVRGG-RV--------LFSGLSFTLAAGEALVLT--------GPNGSGKTTLLRL-------I----AGLLP   53 (207)
T ss_pred             EEEEEeEEEEECC-eE--------EEeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        156 LFGGTVTKP--------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       156 ~~~G~i~~~--------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      |++|+|...        .++.++|++|++.++ ..|+++|+.+....     .....+++.++++.+++.++.+++    
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~----  124 (207)
T PRK13539         54 PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAF-----LGGEELDIAAALEAVGLAPLAHLP----  124 (207)
T ss_pred             CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHh-----cCCcHHHHHHHHHHcCCHHHHcCC----
Confidence            999998532        245699999888664 57999999764211     112345688899999997655443    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .++|+|++||+++.+..
T Consensus       125 -----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  192 (207)
T PRK13539        125 -----FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG  192 (207)
T ss_pred             -----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence                 578999999999999999999999999999999999999999888764   38999999999987653

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-34  Score=262.20  Aligned_cols=179  Identities=22%  Similarity=0.276  Sum_probs=145.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||+++|+....        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl~~   53 (275)
T PRK13639          1 ILETRDLKYSYPDGTE--------ALKGINFKAEKGEMVALL--------GPNGAGKSTLFLH-------F----NGILK   53 (275)
T ss_pred             CEEEEEEEEEeCCCCe--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999963333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...             .++.|+|+||++  .++..|+.||+.++..... .......+++.++++.+++.++.+
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~  132 (275)
T PRK13639         54 PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSKEEVEKRVKEALKAVGMEGFEN  132 (275)
T ss_pred             CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchhhc
Confidence            999998421             135699999997  4567899999986421100 000011245778899999976665


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++   .+.|||++||+++.+.
T Consensus       133 ~~---------~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~  201 (275)
T PRK13639        133 KP---------PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP  201 (275)
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence            53         679999999999999999999999999999999999999999888765   3899999999998765

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-34  Score=261.48  Aligned_cols=179  Identities=21%  Similarity=0.251  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..        +++|+||+|++||+++|+        |+|  ||  |+++       |    +|+++
T Consensus         3 ~l~~~~l~~~~~~~~~--------~l~~vsl~i~~Ge~~~i~--------G~NGsGKSTLl~~-------l----~Gl~~   55 (277)
T PRK13652          3 LIETRDLCYSYSGSKE--------ALNNINFIAPRNSRIAVI--------GPNGAGKSTLFRH-------F----NGILK   55 (277)
T ss_pred             eEEEEEEEEEeCCCCc--------eeeEeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            4789999999964344        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|...           .++.++|+||++.  ++..|+.+|+.++..... .......+.+.++++.+++.+..++.
T Consensus        56 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~  134 (277)
T PRK13652         56 PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG-LDEETVAHRVSSALHMLGLEELRDRV  134 (277)
T ss_pred             CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCC
Confidence            999998531           1346999999983  567899999986431100 00011124577889999997766553


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                               +..||||||||++|||||+.+|+++||||||++||+.+...+.+++++    .+.|+|++||+++.+.
T Consensus       135 ---------~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~  202 (277)
T PRK13652        135 ---------PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVP  202 (277)
T ss_pred             ---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence                     679999999999999999999999999999999999999999887764    3799999999998764

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=2.5e-34  Score=249.03  Aligned_cols=162  Identities=25%  Similarity=0.279  Sum_probs=132.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-------------CC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-------------PR  166 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-------------~r  166 (298)
                      +++|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|+|...             .+
T Consensus         7 il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   67 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALL--------GANGAGKSTLLLH-------L----NGLLRPQSGAVLIDGEPLDYSRKGLLERR   67 (190)
T ss_pred             eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceeEEECCEEccccccchHHHH
Confidence            899999999999999999        999  99  9999       8    99999999997521             13


Q ss_pred             CcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400        167 GKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA  244 (298)
Q Consensus       167 ~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla  244 (298)
                      +.++|+||++  .++..|++||+.++...... ......+++.++++.+++.+..+++         +.+||||||||++
T Consensus        68 ~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~  137 (190)
T TIGR01166        68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL-SEAEVERRVREALTAVGASGLRERP---------THCLSGGEKKRVA  137 (190)
T ss_pred             hhEEEEecChhhccccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCchhhhhCC---------hhhCCHHHHHHHH
Confidence            4699999998  35678999999874211000 0001124567888999987665553         6799999999999


Q ss_pred             HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      |||||+.+|+++||||||++||+.+.+.+.+++++   .++|+|++||+++.+
T Consensus       138 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~  190 (190)
T TIGR01166       138 IAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence            99999999999999999999999999999888765   379999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-34  Score=258.40  Aligned_cols=178  Identities=24%  Similarity=0.247  Sum_probs=143.9

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      |+++||++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (252)
T TIGR03005         1 VRFSDVTKRFGI-LT--------VLDGLNFSVAAGEKVALI--------GPSGSGKSTILRI-------L----MTLEPI   52 (252)
T ss_pred             CEEEEEEEEeCC-ee--------EEeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400        157 FGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQ  211 (298)
Q Consensus       157 ~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~  211 (298)
                      ++|+|...                        .++.++|+||++.++. .|+.||+.++.............+.+.++++
T Consensus        53 ~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~  132 (252)
T TIGR03005        53 DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLD  132 (252)
T ss_pred             CceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            99987421                        1456999999998764 7999999874210000000112345778899


Q ss_pred             HcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       212 ~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      .+++.+..++.         +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++    .+.|+|++
T Consensus       133 ~~gl~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv  203 (252)
T TIGR03005       133 MVGLADKADHM---------PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV  203 (252)
T ss_pred             HcCChhHhhcC---------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence            99987665543         678999999999999999999999999999999999999988887764    38999999


Q ss_pred             ecCcchhh
Q psy11400        288 SHRKSLWT  295 (298)
Q Consensus       288 tH~l~~~~  295 (298)
                      ||+++.+.
T Consensus       204 sH~~~~~~  211 (252)
T TIGR03005       204 THEMGFAR  211 (252)
T ss_pred             eCCHHHHH
Confidence            99998763

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=4.2e-34  Score=253.22  Aligned_cols=180  Identities=24%  Similarity=0.291  Sum_probs=145.0

Q ss_pred             EEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         81 RGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        81 i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ++++|+++.|+.+.  ..       +++|+||++++|++++|+        |+|  ||  |+++       |    +|++
T Consensus         2 l~~~~l~~~~~~~~~~~~-------il~~vs~~i~~G~~~~I~--------G~nGsGKStLl~~-------l----~G~~   55 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQ-------VLFDINLEINPGEIVILT--------GPSGSGKTTLLTL-------I----GGLR   55 (220)
T ss_pred             EEEEEEEEEccCCCccee-------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            68999999996431  22       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        155 PLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       155 ~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      +|++|+|...              .++.++|+||++.++. .|+.+|+.++.............+.+.++++.+++.+..
T Consensus        56 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  135 (220)
T TIGR02982        56 SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL  135 (220)
T ss_pred             CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh
Confidence            9999997531              1357999999998776 699999986431110000001124577889999997666


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++.         +.+||+|||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||+++...
T Consensus       136 ~~~---------~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~  206 (220)
T TIGR02982       136 DYY---------PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD  206 (220)
T ss_pred             hcC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence            553         578999999999999999999999999999999999999888887754    3799999999998654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=6.8e-34  Score=248.01  Aligned_cols=173  Identities=21%  Similarity=0.238  Sum_probs=143.3

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    .|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (198)
T TIGR01189         1 LAARNLACSRGE-RM--------LFEGLSFTLNAGEALQVT--------GPNGIGKTTLLRI-------L----AGLLRP   52 (198)
T ss_pred             CEEEEEEEEECC-EE--------EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999953 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|+|...          .++.++|++|++.++. .|+.+|+.+....     .......+.++++.+++.+..+++   
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~---  124 (198)
T TIGR01189        53 DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAI-----HGGAQRTIEDALAAVGLTGFEDLP---  124 (198)
T ss_pred             CccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHH-----cCCcHHHHHHHHHHcCCHHHhcCC---
Confidence            99997531          1357999999988765 6999999764211     111234678889999998766543   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++||||++.+|++++|||||++||+.+...+.+.+++   .+.|+|++||+...+.
T Consensus       125 ------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~  191 (198)
T TIGR01189       125 ------AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV  191 (198)
T ss_pred             ------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence                  678999999999999999999999999999999999999999888765   3889999999986443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.9e-33  Score=246.76  Aligned_cols=167  Identities=21%  Similarity=0.254  Sum_probs=138.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.++++|+++.|+....+       +++|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus         5 ~~l~~~~l~~~~~~~~~~-------~l~~isl~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   58 (207)
T cd03369           5 GEIEVENLSVRYAPDLPP-------VLKNVSFKVKAGEKIGIV--------GRTGAGKSTLILA-------L----FRFL   58 (207)
T ss_pred             CeEEEEEEEEEeCCCCcc-------cccCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence            458999999999743222       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      +|++|+|...           .++.|+|+||++.++.+|+++|+.+..        ....+++.++++   +    +   
T Consensus        59 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~--------~~~~~~~~~~l~---~----~---  120 (207)
T cd03369          59 EAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD--------EYSDEEIYGALR---V----S---  120 (207)
T ss_pred             CCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccC--------CCCHHHHHHHhh---c----c---
Confidence            9999998532           246799999999988889999997532        122333444443   1    1   


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                            .++..|||||+||++|||||+.+|+++||||||++||+.+.+.+.+++++.  ++|+|++||+++.+.
T Consensus       121 ------~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~  188 (207)
T cd03369         121 ------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII  188 (207)
T ss_pred             ------CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence                  246799999999999999999999999999999999999999999988763  789999999998764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=8.1e-34  Score=250.58  Aligned_cols=176  Identities=18%  Similarity=0.162  Sum_probs=145.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++++||+|++||+++|+        |+|  ||  |+++       +    +|++
T Consensus        10 ~~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~   61 (214)
T PRK13543         10 PLLAAHALAFSRNE-EP--------VFGPLDFHVDAGEALLVQ--------GDNGAGKTTLLRV-------L----AGLL   61 (214)
T ss_pred             ceEEEeeEEEecCC-ce--------eeecceEEECCCCEEEEE--------cCCCCCHHHHHHH-------H----hCCC
Confidence            46899999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc--------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        155 PLFGGTVTKP--------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       155 ~~~~G~i~~~--------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      +|++|+|...        .++.++|++|++.++.. |++||+.+.....    .....+.+.++++.+++.+..++    
T Consensus        62 ~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~----  133 (214)
T PRK13543         62 HVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH----GRRAKQMPGSALAIVGLAGYEDT----  133 (214)
T ss_pred             CCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc----CCcHHHHHHHHHHHcCChhhccC----
Confidence            9999998542        13459999999987764 9999997642110    11123456778888888765444    


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                           .+.+||||||||++||||++.+|+++||||||++||+...+.+.+.+++   .+.|+|++||+++.+.
T Consensus       134 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  201 (214)
T PRK13543        134 -----LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP  201 (214)
T ss_pred             -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence                 3678999999999999999999999999999999999999999888764   3899999999998765

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.7e-34  Score=250.38  Aligned_cols=175  Identities=19%  Similarity=0.183  Sum_probs=143.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|+   .        .++|+||++++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 ~~~~~l~~~~~---~--------~~~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   50 (213)
T TIGR01277         1 LALDKVRYEYE---H--------LPMEFDLNVADGEIVAIM--------GPSGAGKSTLLNL-------I----AGFIEP   50 (213)
T ss_pred             CeEEeeeEEeC---C--------cceeeEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence            36899999995   1        567999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...         .++.++|+||++.++. .|+.||+.++.... ........+++.++++.+++.+..+++    
T Consensus        51 ~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~----  125 (213)
T TIGR01277        51 ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG-LKLNAEQQEKVVDAAQQVGIADYLDRL----  125 (213)
T ss_pred             CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc-CCccHHHHHHHHHHHHHcCcHHHhhCC----
Confidence            99987531         2456999999998876 59999997653110 000111245677889999997766553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++    .+.|+|++||+++.+.
T Consensus       126 -----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~  193 (213)
T TIGR01277       126 -----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR  193 (213)
T ss_pred             -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                 679999999999999999999999999999999999999988887764    3789999999998754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-34  Score=258.20  Aligned_cols=185  Identities=19%  Similarity=0.180  Sum_probs=144.2

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+.++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+
T Consensus        11 ~~~l~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl   62 (260)
T PRK10744         11 PSKIQVRNLNFYYGK-FH--------ALKNINLDIAKNQVTAFI--------GPSGCGKSTLLRT-------F----NRM   62 (260)
T ss_pred             CceEEEEEEEEEeCC-eE--------EeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            357999999999963 33        899999999999999999        999  99  9999       8    888


Q ss_pred             cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      ++     |++|+|...             .+++++|+||++.++..|+++|+.++.............+++.++++.+++
T Consensus        63 ~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l  142 (260)
T PRK10744         63 YELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL  142 (260)
T ss_pred             cccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence            75     478987421             145799999999888899999998753110000000112457788888887


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      ...+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++  .+.|+|++||+++.
T Consensus       143 ~~~~~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~  217 (260)
T PRK10744        143 WNEVKD-----KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ  217 (260)
T ss_pred             ChhhHH-----HHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            432110     01123679999999999999999999999999999999999999999888875  36899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       218 ~~  219 (260)
T PRK10744        218 AA  219 (260)
T ss_pred             HH
Confidence            64

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=4.8e-34  Score=267.74  Aligned_cols=190  Identities=18%  Similarity=0.227  Sum_probs=145.7

Q ss_pred             CcEEEeeeeEecCCCCC-CC---CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400         79 NLRGRLGITLGLRSGGL-GF---DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR  150 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~-~~---~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~  150 (298)
                      ..++++|+++.|+.+.. .+   .....++++|+||+|++||+++|+        |+|  ||  |+++       +    
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lv--------G~sGsGKSTLlk~-------i----   67 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVV--------GESGCGKSTFARA-------I----   67 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----
Confidence            46899999999963210 00   000123899999999999999999        999  99  9999       8    


Q ss_pred             ccccccCCceeecc--------------CCCcEEEEcCcC--CCC-CCCHHHHHccCCcchh-hhhcCCCHHHHHHHHHH
Q psy11400        151 DQLWPLFGGTVTKP--------------PRGKLFYVPQRP--YMT-LGTLRDQVIYPHTKED-MIQKGITDADLTEYLQK  212 (298)
Q Consensus       151 ~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~i~~~l~~  212 (298)
                      .|+.+|++|+|...              .+++|+||||+|  .++ ..|+.+|+.++..... ........+.+.++++.
T Consensus        68 ~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~  147 (331)
T PRK15079         68 IGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK  147 (331)
T ss_pred             HCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            99999999987521              245799999998  355 5799999976421100 00011123456788999


Q ss_pred             cCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       213 ~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      +++. +..++         ++.+|||||||||+|||||+.+|++||+||||++||+.++..+.+++++    .+.|+|+|
T Consensus       148 vgl~~~~~~~---------~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~i  218 (331)
T PRK15079        148 VGLLPNLINR---------YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI  218 (331)
T ss_pred             cCCChHHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            9984 34443         4789999999999999999999999999999999999999998887754    38999999


Q ss_pred             ecCcchhhh
Q psy11400        288 SHRKSLWTH  296 (298)
Q Consensus       288 tH~l~~~~~  296 (298)
                      ||+++.+..
T Consensus       219 THdl~~~~~  227 (331)
T PRK15079        219 AHDLAVVKH  227 (331)
T ss_pred             eCCHHHHHH
Confidence            999998764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=4.7e-33  Score=302.87  Aligned_cols=239  Identities=16%  Similarity=0.177  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeE
Q psy11400         10 MGRMLVKLAEAIG-RLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITL   88 (298)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~   88 (298)
                      ...++..+..++. .+......+.++.++..||.+++...+.....              ..     .....+.++|++|
T Consensus       340 ~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--------------~~-----~~~~~i~~~~~~f  400 (1490)
T TIGR01271       340 TISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--------------YN-----LTTTEVEMVNVTA  400 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--------------cc-----CCCCceEEecceE
Confidence            3344444444543 46666777888999999999998653221100              00     0012477777777


Q ss_pred             ecCCCC----------C-----C----------CCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecC
Q psy11400         89 GLRSGG----------L-----G----------FDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVP  139 (298)
Q Consensus        89 ~~~~~~----------~-----~----------~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~  139 (298)
                      .|+...          .     .          ....+.++|+|+||+|++|+.++|+        |||  ||  |+++ 
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~--------G~~GsGKSTLl~~-  471 (1490)
T TIGR01271       401 SWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVA--------GSTGSGKSSLLMM-  471 (1490)
T ss_pred             ecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-
Confidence            774210          0     0          0000123899999999999999999        999  99  9999 


Q ss_pred             ccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        140 QRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       140 ~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                            +    .|+++|++|+|...  .+|+||||+|+++++|++|||.|+..        .+.++..++++.+++.+.+
T Consensus       472 ------l----~G~~~~~~G~i~~~--g~iayv~Q~~~l~~~Ti~eNI~~g~~--------~~~~~~~~~~~~~~L~~~l  531 (1490)
T TIGR01271       472 ------I----MGELEPSEGKIKHS--GRISFSPQTSWIMPGTIKDNIIFGLS--------YDEYRYTSVIKACQLEEDI  531 (1490)
T ss_pred             ------H----hCCCCCCCceEEEC--CEEEEEeCCCccCCccHHHHHHhccc--------cchHHHHHHHHHHhHHHHH
Confidence                  8    99999999999754  36999999999999999999998742        1233455666767776655


Q ss_pred             hh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH-HHh--cCcEEEEEecCcchh
Q psy11400        220 NR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-CRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       220 ~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~-l~~--~~~TiIiitH~l~~~  294 (298)
                      +. +.|.+|..+ .+.+|||||||||+||||++.+|+++||||||||||+.+++.+++. +++  .++|+|+|||+++.+
T Consensus       532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~  611 (1490)
T TIGR01271       532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHL  611 (1490)
T ss_pred             HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHH
Confidence            54 667777655 7889999999999999999999999999999999999999999874 333  389999999999876


Q ss_pred             hh
Q psy11400        295 TH  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       612 ~~  613 (1490)
T TIGR01271       612 KK  613 (1490)
T ss_pred             Hh
Confidence            54

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-34  Score=260.89  Aligned_cols=178  Identities=19%  Similarity=0.176  Sum_probs=143.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ml~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   52 (271)
T PRK13638          1 MLATSDLWFRYQD-EP--------VLKGLNLDFSLSPVTGLV--------GANGCGKSTLFMN-------L----SGLLR   52 (271)
T ss_pred             CeEEEEEEEEcCC-cc--------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...             .++.|+|+||++.  ++..++.+|+.++...... ......+++.++++.+++.++.+
T Consensus        53 p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~  131 (271)
T PRK13638         53 PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGV-PEAEITRRVDEALTLVDAQHFRH  131 (271)
T ss_pred             CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHhHhc
Confidence            999997421             1346999999985  4567899999764211000 00011235677888888876655


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++   .++|+|++||+++.+.
T Consensus       132 ~~---------~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~  200 (271)
T PRK13638        132 QP---------IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY  200 (271)
T ss_pred             CC---------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            43         679999999999999999999999999999999999999999888765   3789999999998764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-33  Score=259.12  Aligned_cols=182  Identities=21%  Similarity=0.209  Sum_probs=146.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|+....+       +++|+||+|++||+++|+        |+|  ||  |+++       +    +|++
T Consensus         4 ~~l~i~~l~~~~~~~~~~-------~l~~v~l~i~~Ge~~~I~--------G~nGaGKSTLl~~-------l----~G~~   57 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKP-------ALNDISFSIPRGSWTALI--------GHNGSGKSTISKL-------I----NGLL   57 (282)
T ss_pred             ceEEEEEEEEEcCCCCcc-------ceeeEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hccc
Confidence            468999999999643322       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCC---ceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        155 PLFG---GTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       155 ~~~~---G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      +|++   |+|...           .+++++|+||++.  ++..|+.||+.++...... ......+++.++++.+++.++
T Consensus        58 ~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~  136 (282)
T PRK13640         58 LPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIKIVRDVLADVGMLDY  136 (282)
T ss_pred             CCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCC-CHHHHHHHHHHHHHHCCChhH
Confidence            9987   787521           2457999999984  5678999999875311000 000112457788999999876


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .+++         +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|+|||++||+++.+
T Consensus       137 ~~~~---------~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~  207 (282)
T PRK13640        137 IDSE---------PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA  207 (282)
T ss_pred             hcCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            6553         679999999999999999999999999999999999999998888764    379999999999876


Q ss_pred             hh
Q psy11400        295 TH  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       208 ~~  209 (282)
T PRK13640        208 NM  209 (282)
T ss_pred             Hh
Confidence            53

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-34  Score=262.66  Aligned_cols=181  Identities=18%  Similarity=0.107  Sum_probs=143.0

Q ss_pred             CcEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         79 NLRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      +.++++|+++.|++..   .+       +++|+||+|++||+++|+        |+|  ||  |+++       +    +
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~-------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~   58 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFK-------ALNNTSLTFKKNKVTCVI--------GTTGSGKSTMIQL-------T----N   58 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccc-------eeeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence            4689999999996432   12       899999999999999999        999  99  9999       8    9


Q ss_pred             cccccCCceeecc----------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400        152 QLWPLFGGTVTKP----------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV  213 (298)
Q Consensus       152 ~l~~~~~G~i~~~----------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~  213 (298)
                      |+++|++|+|...                .++.|+|+||++.  ++..|++||+.++...... ......+.+.++++.+
T Consensus        59 Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~ll~~~  137 (289)
T PRK13645         59 GLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE-NKQEAYKKVPELLKLV  137 (289)
T ss_pred             cCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            9999999987421                1346999999983  5667999999875311000 0000123466778888


Q ss_pred             CCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400        214 QLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS  288 (298)
Q Consensus       214 ~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit  288 (298)
                      ++. .+.++         .+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++    .++|+|+||
T Consensus       138 ~L~~~~~~~---------~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiis  208 (289)
T PRK13645        138 QLPEDYVKR---------SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT  208 (289)
T ss_pred             CCChhHhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            884 44444         3679999999999999999999999999999999999999998887654    379999999


Q ss_pred             cCcchhh
Q psy11400        289 HRKSLWT  295 (298)
Q Consensus       289 H~l~~~~  295 (298)
                      |+++.+.
T Consensus       209 H~~~~~~  215 (289)
T PRK13645        209 HNMDQVL  215 (289)
T ss_pred             cCHHHHH
Confidence            9998654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-33  Score=255.79  Aligned_cols=179  Identities=22%  Similarity=0.288  Sum_probs=145.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++++|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   53 (255)
T PRK11231          2 TLRTENLTVGYGT-KR--------ILNDLSLSLPTGKITALI--------GPNGCGKSTLLKC-------F----ARLLT   53 (255)
T ss_pred             EEEEEeEEEEECC-EE--------EEeeeeeEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCC-CHHHHHccCCcch-hhhh--cCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKE-DMIQ--KGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~--~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...           .++.++|+||++.++.. |+.||+.++.... ....  .....+++.++++.+++.+..+
T Consensus        54 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  133 (255)
T PRK11231         54 PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD  133 (255)
T ss_pred             CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc
Confidence            999987532           13469999999987754 9999998753110 0000  0112345778889999876655


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +.         +.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++   .++|+|++||+++.+.
T Consensus       134 ~~---------~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~  202 (255)
T PRK11231        134 RR---------LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAS  202 (255)
T ss_pred             CC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            43         679999999999999999999999999999999999999999888764   3799999999998764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=3.5e-34  Score=261.49  Aligned_cols=176  Identities=22%  Similarity=0.193  Sum_probs=142.2

Q ss_pred             EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      .++|+++.|.+ ..        +++|+||+|++|++++|+        |||  ||  |+++       |    +|+++|+
T Consensus        26 ~~~~~~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------L----~Gl~~p~   77 (269)
T cd03294          26 SKEEILKKTGQ-TV--------GVNDVSLDVREGEIFVIM--------GLSGSGKSTLLRC-------I----NRLIEPT   77 (269)
T ss_pred             hhhhhhhhcCC-ce--------EeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCC
Confidence            56788888853 33        899999999999999999        999  99  9999       8    9999999


Q ss_pred             Cceeecc---------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        158 GGTVTKP---------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       158 ~G~i~~~---------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|+|...               .+++++|+||++.++ ..|+.||+.++...... ......+++.++++.+++.+..++
T Consensus        78 ~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~  156 (269)
T cd03294          78 SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHK  156 (269)
T ss_pred             CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhC
Confidence            9987531               124699999999877 46999999874211000 001123457788999999776655


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +         +.+||||||||++|||||+++|++|||||||++||+.+++.+.+.+++    .|+|+|++||+++.+.
T Consensus       157 ~---------~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~  225 (269)
T cd03294         157 Y---------PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL  225 (269)
T ss_pred             C---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3         679999999999999999999999999999999999999999887754    2799999999998754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0054|consensus

Probab=100.00  E-value=5e-33  Score=293.17  Aligned_cols=241  Identities=22%  Similarity=0.247  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeee
Q psy11400          8 YTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGIT   87 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~   87 (298)
                      ++...++..+..|+..+-.....+.++..+..|+.+++...+-... ...+             ......+..++++|.+
T Consensus       460 F~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~-~~~~-------------~~~~~~~~~i~i~~~s  525 (1381)
T KOG0054|consen  460 FTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD-SVER-------------SPDEAGENAIEIKNGS  525 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc-cccc-------------CCCCCCCceEEEeeee
Confidence            3455666777788888888888899999999999999986432211 0000             0011223569999999


Q ss_pred             EecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400         88 LGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT  162 (298)
Q Consensus        88 ~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~  162 (298)
                      |++... ..+       .|+||||+|++|+.+||+        |+.  ||  |+..       +    .|-.+..+|++.
T Consensus       526 fsW~~~~~~~-------tL~dIn~~i~~G~lvaVv--------G~vGsGKSSLL~A-------i----LGEm~~~sG~v~  579 (1381)
T KOG0054|consen  526 FSWDSESPEP-------TLKDINFEIKKGQLVAVV--------GPVGSGKSSLLSA-------I----LGEMPKLSGSVA  579 (1381)
T ss_pred             EecCCCCCcc-------cccceeEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcccccceEE
Confidence            998542 222       899999999999999999        999  99  7777       6    777788899887


Q ss_pred             ccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHH
Q psy11400        163 KPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEK  240 (298)
Q Consensus       163 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqk  240 (298)
                      ..  ..++||||.||++++||||||+|+.        ..++++.+++++.+.|...++. |.|-.|.++ +|-+||||||
T Consensus       580 v~--gsiaYv~Q~pWI~ngTvreNILFG~--------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK  649 (1381)
T KOG0054|consen  580 VN--GSVAYVPQQPWIQNGTVRENILFGS--------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK  649 (1381)
T ss_pred             Ec--CeEEEeccccHhhCCcHHHhhhcCc--------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence            64  4599999999999999999999985        3567788899999999876655 777777766 8999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhcC
Q psy11400        241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~~  298 (298)
                      ||+++|||++++.++++||.|.||+|..+.++|++.+-.   .++|+|+|||.++..++.|
T Consensus       650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad  710 (1381)
T KOG0054|consen  650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHAD  710 (1381)
T ss_pred             HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCC
Confidence            999999999999999999999999999999999886543   3799999999999887654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-33  Score=256.72  Aligned_cols=180  Identities=21%  Similarity=0.201  Sum_probs=145.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus        10 ~~l~i~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   61 (265)
T PRK10575         10 TTFALRNVSFRVPG-RT--------LLHPLSLTFPAGKVTGLI--------GHNGSGKSTLLKM-------L----GRHQ   61 (265)
T ss_pred             ceEEEeeEEEEECC-EE--------EEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence            36899999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hhh--hcCCCHHHHHHHHHHcCCchhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DMI--QKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~--~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      +|++|+|...           .++.++|+||++.++ ..|+.||+.++.... ...  ......+++.++++.+++.+..
T Consensus        62 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  141 (265)
T PRK10575         62 PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA  141 (265)
T ss_pred             CCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence            9999998532           135699999998665 459999998753210 000  0011234678889999987665


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++.         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++    .++|+|++||+++.+.
T Consensus       142 ~~~---------~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~  212 (265)
T PRK10575        142 HRL---------VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA  212 (265)
T ss_pred             cCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            543         678999999999999999999999999999999999999988887754    3799999999998764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=6.2e-34  Score=240.17  Aligned_cols=176  Identities=20%  Similarity=0.221  Sum_probs=147.8

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      +.+++|.|.|..  .         =-.++++|+.||++||+        |||  ||  |+++       +    +|+..|
T Consensus         2 l~L~~V~~~y~~--~---------~~~fdl~v~~ge~vAi~--------GpSGaGKSTLLnL-------I----AGF~~P   51 (231)
T COG3840           2 LALDDVRFSYGH--L---------PMRFDLTVPAGEIVAIL--------GPSGAGKSTLLNL-------I----AGFETP   51 (231)
T ss_pred             ccccceEEeeCc--c---------eEEEEEeecCCcEEEEE--------CCCCccHHHHHHH-------H----HhccCC
Confidence            678899999952  2         24589999999999999        999  99  9999       8    999999


Q ss_pred             CCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      .+|.|..         +..+-++++||+..+|. .||.+|+.++..+.-.. .....++++.++.++|+..+.++.    
T Consensus        52 ~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~~RL----  126 (231)
T COG3840          52 ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFLKRL----  126 (231)
T ss_pred             CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHhhhC----
Confidence            9999853         34567999999999985 69999999986542111 123457889999999999998885    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchhhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~~~  296 (298)
                           +.+||||||||+++||+|+++-+|++||||+|+|||..+.++..+    +.+.+.|+++|||.++.++.
T Consensus       127 -----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~  195 (231)
T COG3840         127 -----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR  195 (231)
T ss_pred             -----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH
Confidence                 679999999999999999999999999999999999888777655    45579999999999987653

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-33  Score=251.09  Aligned_cols=176  Identities=21%  Similarity=0.214  Sum_probs=143.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+.  .         ..|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~--~---------~~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   50 (232)
T PRK10771          1 MLKLTDITWLYHH--L---------PMRFDLTVERGERVAIL--------GPSGAGKSTLLNL-------I----AGFLT   50 (232)
T ss_pred             CeEEEEEEEEECC--c---------cceeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999952  2         23899999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .++.++|+||++.++. .|+.||+.++.... .......++++.++++.+++.+..+++   
T Consensus        51 ~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~---  126 (232)
T PRK10771         51 PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIEDLLARL---  126 (232)
T ss_pred             CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHHHHhCC---
Confidence            999998532         1356999999998876 59999998753210 000111245678899999998766653   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++||||++.+|+++||||||++||+.+.+.+.+++++    .++|+|++||+++.+.
T Consensus       127 ------~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~  194 (232)
T PRK10771        127 ------PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA  194 (232)
T ss_pred             ------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence                  679999999999999999999999999999999999999988887754    3789999999998764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=8e-34  Score=252.81  Aligned_cols=174  Identities=20%  Similarity=0.211  Sum_probs=139.9

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+.+|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (230)
T TIGR03410         1 LEVSNLNVYYGQ-SH--------ILRGVSLEVPKGEVTCVL--------GRNGVGKTTLLKT-------L----MGLLPV   52 (230)
T ss_pred             CEEEeEEEEeCC-eE--------EecceeeEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcC-Cchhhhhc
Q psy11400        157 FGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNRE  222 (298)
Q Consensus       157 ~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~~  222 (298)
                      ++|+|...            .++.++|+||++.++.. |+.+|+.++....    .....+...++++.++ +.+..++ 
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~-  127 (230)
T TIGR03410        53 KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL----PRRSRKIPDEIYELFPVLKEMLGR-  127 (230)
T ss_pred             CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc----CcchHHHHHHHHHHHHhHHHHhhC-
Confidence            99997531            13469999999988764 9999998653211    0111233455666665 3333333 


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                              .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||+++.+.
T Consensus       128 --------~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  196 (230)
T TIGR03410       128 --------RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAR  196 (230)
T ss_pred             --------ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence                    3679999999999999999999999999999999999999999888765    2789999999998765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-33  Score=257.47  Aligned_cols=185  Identities=20%  Similarity=0.207  Sum_probs=145.4

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +..|+++||++.|++ ..        +|+|+||+|++|++++|+        |+|  ||  |+++       +    .|+
T Consensus        17 ~~~l~~~nl~~~~~~-~~--------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl   68 (267)
T PRK14235         17 EIKMRARDVSVFYGE-KQ--------ALFDVDLDIPEKTVTAFI--------GPSGCGKSTFLRC-------L----NRM   68 (267)
T ss_pred             CceEEEEeEEEEECC-EE--------EEEEEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhh
Confidence            347999999999963 33        899999999999999999        999  99  9999       8    898


Q ss_pred             ccc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcC
Q psy11400        154 WPL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQ  214 (298)
Q Consensus       154 ~~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~  214 (298)
                      ++|     ++|+|...             .++.++|+||++.++..|+.||+.++....... ......+++.++++.++
T Consensus        69 ~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~  148 (267)
T PRK14235         69 NDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG  148 (267)
T ss_pred             cccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence            874     88987521             135699999999888789999998753111000 00111345678889999


Q ss_pred             CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400        215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS  292 (298)
Q Consensus       215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~  292 (298)
                      +.+.+..     .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++  .+.|+|++||+++
T Consensus       149 l~~~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~  223 (267)
T PRK14235        149 LWEEVKD-----RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ  223 (267)
T ss_pred             CchhhhH-----HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence            8642210     01123679999999999999999999999999999999999999999988875  3689999999998


Q ss_pred             hhh
Q psy11400        293 LWT  295 (298)
Q Consensus       293 ~~~  295 (298)
                      .+.
T Consensus       224 ~~~  226 (267)
T PRK14235        224 QAA  226 (267)
T ss_pred             HHH
Confidence            764

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.5e-34  Score=265.41  Aligned_cols=190  Identities=22%  Similarity=0.275  Sum_probs=145.2

Q ss_pred             CcEEEeeeeEecCCCCCCCC-CCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFD-SRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~-~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ..|+++|+++.|+.....+. .....+++|+||+|++||+++|+        |+|  ||  |+++       +    .|+
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~Iv--------G~sGsGKSTLl~~-------l----~gl   64 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVV--------GESGCGKSTLARL-------L----TMI   64 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----HcC
Confidence            36899999999963210000 00113899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc--------------CCCcEEEEcCcCC--CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        154 WPLFGGTVTKP--------------PRGKLFYVPQRPY--MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      .+|++|+|...              .+++|+||||+|+  +.+ .|+.+++..+.............+++.++++.+++.
T Consensus        65 ~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~  144 (327)
T PRK11308         65 ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR  144 (327)
T ss_pred             CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC
Confidence            99999987421              2457999999984  443 599998864321100000111235678899999996


Q ss_pred             h-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCc
Q psy11400        217 Y-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRK  291 (298)
Q Consensus       217 ~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l  291 (298)
                      + ..++         ++.+||||||||++|||||+.+|++||+||||++||..+...+++++++    .|.|+|+|||++
T Consensus       145 ~~~~~~---------~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl  215 (327)
T PRK11308        145 PEHYDR---------YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL  215 (327)
T ss_pred             hHHhcC---------CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3 4443         3789999999999999999999999999999999999999999887754    389999999999


Q ss_pred             chhhh
Q psy11400        292 SLWTH  296 (298)
Q Consensus       292 ~~~~~  296 (298)
                      +.+..
T Consensus       216 ~~~~~  220 (327)
T PRK11308        216 SVVEH  220 (327)
T ss_pred             HHHHH
Confidence            98763

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.1e-33  Score=262.09  Aligned_cols=178  Identities=19%  Similarity=0.206  Sum_probs=146.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|++++|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++
T Consensus         2 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Gei~~l~--------G~NGaGKTTLl~~-------l----~Gl~~   53 (301)
T TIGR03522         2 SIRVSSLTKLYGT-QN--------ALDEVSFEAQKGRIVGFL--------GPNGAGKSTTMKI-------I----TGYLP   53 (301)
T ss_pred             EEEEEEEEEEECC-EE--------EEEEeEEEEeCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .+++++|+||++.++. .|+.||+.+....... ......+++.++++.+++.+..++.  
T Consensus        54 ~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~--  130 (301)
T TIGR03522        54 PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM-KGQLLKQRVEEMIELVGLRPEQHKK--  130 (301)
T ss_pred             CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCc--
Confidence            999998531          1457999999998875 5999999763211000 0011134678889999998766553  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                             +..||||||||++|||||+++|+++||||||+|||+.+.+.+++.+++.  ++|||++||+++.+.
T Consensus       131 -------~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~  196 (301)
T TIGR03522       131 -------IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE  196 (301)
T ss_pred             -------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence                   6789999999999999999999999999999999999999999888763  799999999998654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-33  Score=255.03  Aligned_cols=178  Identities=24%  Similarity=0.290  Sum_probs=144.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~   53 (258)
T PRK13548          2 MLEARNLSVRLGG-RT--------LLDDVSLTLRPGEVVAIL--------GPNGAGKSTLLRA-------L----SGELS   53 (258)
T ss_pred             eEEEEeEEEEeCC-ee--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      |++|+|...           .++.++|+||++.+ +..|++||+.++...... ......+.+.++++.+++.+..++. 
T Consensus        54 p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-  131 (258)
T PRK13548         54 PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL-SRAEDDALVAAALAQVDLAHLAGRD-  131 (258)
T ss_pred             CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC-CcHHHHHHHHHHHHHcCCHhHhcCC-
Confidence            999997531           13569999999977 567999999875321100 0011234577889999987655543 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHh------cCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFY------HRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL  293 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~------~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~  293 (298)
                              +.+||||||||++|||||+      .+|+++||||||++||+.+...+.+++++    .+.|||++||+++.
T Consensus       132 --------~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  203 (258)
T PRK13548        132 --------YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL  203 (258)
T ss_pred             --------cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence                    6799999999999999999      59999999999999999999888877653    47899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       204 ~~  205 (258)
T PRK13548        204 AA  205 (258)
T ss_pred             HH
Confidence            64

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=5.2e-34  Score=270.05  Aligned_cols=163  Identities=21%  Similarity=0.162  Sum_probs=136.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------C---
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------P---  165 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~---  165 (298)
                      +++|+||+|++||+++|+        |+|  ||  |+++       |    .|+++|++|+|...           .   
T Consensus         8 ~l~~vs~~i~~Gei~~l~--------G~sGsGKSTLLr~-------L----~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~   68 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIM--------GLSGSGKSTTVRM-------L----NRLIEPTAGQIFIDGENIMKQSPVELREV   68 (363)
T ss_pred             eEEeeEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            899999999999999999        999  99  9999       8    99999999998531           1   


Q ss_pred             -CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400        166 -RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV  243 (298)
Q Consensus       166 -r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl  243 (298)
                       +++|+||||++.+|+ .|++||+.++...... ......+++.++++.++|..+.++.         +.+|||||||||
T Consensus        69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~-~~~~~~~~~~~~l~~vgL~~~~~~~---------p~~LSGGq~QRV  138 (363)
T TIGR01186        69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-PEQERKEKALELLKLVGLEEYEHRY---------PDELSGGMQQRV  138 (363)
T ss_pred             HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCchhhhCC---------hhhCCHHHHHHH
Confidence             568999999999886 6999999875321100 0011235678899999998776653         679999999999


Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +|||||+.+|+++|||||||+||+.+...+.+.+.+    .++|+|+|||+++.+.
T Consensus       139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~  194 (363)
T TIGR01186       139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAI  194 (363)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999999999999999999999999999999887653    3899999999998653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=254.39  Aligned_cols=183  Identities=22%  Similarity=0.277  Sum_probs=144.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         2 ~~~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   53 (246)
T PRK14269          2 IAKTTNLNLFYGK-KQ--------ALFDINMQIEQNKITALI--------GASGCGKSTFLRC-------F----NRMND   53 (246)
T ss_pred             ceeeeeeEEEECC-Ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccC
Confidence            4789999999963 33        899999999999999999        999  99  9999       8    88874


Q ss_pred             ---cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhh-cCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 ---LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQ-KGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ---~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~-~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                         |++|+|...           .++.++|+||++.++..|++||+.++........ .....+++.++++.+++.+.+.
T Consensus        54 ~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  133 (246)
T PRK14269         54 KIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK  133 (246)
T ss_pred             CCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence               689987531           2457999999998888899999987531111000 0112345678899999854321


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .     .....+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+.
T Consensus       134 ~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~  205 (246)
T PRK14269        134 D-----KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK  205 (246)
T ss_pred             H-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            1     01124679999999999999999999999999999999999999999888865  3899999999998654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-33  Score=258.74  Aligned_cols=180  Identities=23%  Similarity=0.265  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         80 LRGRLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +++++||++.|+.. ..+       +++|+||+|++||+++|+        |+|  ||  |+++       +    +|++
T Consensus         4 ~l~~~~l~~~~~~~~~~~-------~l~~v~l~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl~   57 (277)
T PRK13642          4 ILEVENLVFKYEKESDVN-------QLNGVSFSITKGEWVSII--------GQNGSGKSTTARL-------I----DGLF   57 (277)
T ss_pred             eEEEEEEEEEcCCCCcCe-------eeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence            58999999999742 222       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|++|+|...           .++.++|+||++.  ++..|+.||+.++...... ......+.+.++++.+++.++.++
T Consensus        58 ~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~  136 (277)
T PRK13642         58 EEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTR  136 (277)
T ss_pred             CCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhC
Confidence            9999998531           2456999999983  5678999999875311000 000012456788899999776655


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +         +..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .|.|+|++||+++.+.
T Consensus       137 ~---------~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~  205 (277)
T PRK13642        137 E---------PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA  205 (277)
T ss_pred             C---------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3         679999999999999999999999999999999999999999888753    3899999999998865

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-33  Score=254.16  Aligned_cols=179  Identities=20%  Similarity=0.263  Sum_probs=144.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         5 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (255)
T PRK11300          5 LLSVSGLMMRFGG-LL--------AVNNVNLEVREQEIVSLI--------GPNGAGKTTVFNC-------L----TGFYK   56 (255)
T ss_pred             eEEEeeEEEEECC-EE--------EEEeeeeEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCcC
Confidence            6899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch-------hhhh----cC---CCHHHHHH
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-------DMIQ----KG---ITDADLTE  208 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-------~~~~----~~---~~~~~i~~  208 (298)
                      |++|+|...            .+..++|+||++.++. .|+.||+.++....       ....    ..   ...+.+.+
T Consensus        57 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (255)
T PRK11300         57 PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT  136 (255)
T ss_pred             CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH
Confidence            999987531            1235899999998876 59999998752100       0000    00   11235667


Q ss_pred             HHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEE
Q psy11400        209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITL  284 (298)
Q Consensus       209 ~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~Ti  284 (298)
                      +++.+++.+..+++         +.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++    .++||
T Consensus       137 ~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti  207 (255)
T PRK11300        137 WLERVGLLEHANRQ---------AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTV  207 (255)
T ss_pred             HHHhCChhhhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEE
Confidence            78888887655543         679999999999999999999999999999999999999998887754    37899


Q ss_pred             EEEecCcchhh
Q psy11400        285 FTVSHRKSLWT  295 (298)
Q Consensus       285 IiitH~l~~~~  295 (298)
                      |++||+++.+.
T Consensus       208 i~~sH~~~~~~  218 (255)
T PRK11300        208 LLIEHDMKLVM  218 (255)
T ss_pred             EEEeCCHHHHH
Confidence            99999998764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=1.2e-33  Score=250.65  Aligned_cols=185  Identities=19%  Similarity=0.163  Sum_probs=143.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+....  +.....+++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ml~~~~l~~~~~~~~~--~~~~~~il~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~   59 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQ--GGVRLPVLKNVSLTVNAGECVALS--------GPSGAGKSTLLKS-------L----YANYL   59 (224)
T ss_pred             CEEEEeeEEEeecccC--CCcceEEEecceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999963100  000001899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--C-----------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        156 LFGGTVTKP--P-----------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       156 ~~~G~i~~~--~-----------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      |++|+|...  .                 ++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++
T Consensus        60 ~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l  138 (224)
T TIGR02324        60 PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNI  138 (224)
T ss_pred             CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC
Confidence            999987532  0                 246999999997764 599999976421100 0001123466778888888


Q ss_pred             chh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400        216 GYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK  291 (298)
Q Consensus       216 ~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l  291 (298)
                      .+. .++         .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .++|+|++||++
T Consensus       139 ~~~~~~~---------~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~  209 (224)
T TIGR02324       139 PERLWHL---------PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE  209 (224)
T ss_pred             chhhhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            653 333         3679999999999999999999999999999999999999999888765   389999999999


Q ss_pred             chhh
Q psy11400        292 SLWT  295 (298)
Q Consensus       292 ~~~~  295 (298)
                      +.+.
T Consensus       210 ~~~~  213 (224)
T TIGR02324       210 EVRE  213 (224)
T ss_pred             HHHH
Confidence            8764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=2e-33  Score=249.27  Aligned_cols=173  Identities=21%  Similarity=0.182  Sum_probs=145.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++||+++|+. ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~l~~v~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (223)
T TIGR03740         1 LETKNLSKRFGK-QT--------AVNNISLTVPKNSVYGLL--------GPNGAGKSTLLKM-------I----TGILRP   52 (223)
T ss_pred             CEEEeEEEEECC-EE--------EEeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeeccC-------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400        157 FGGTVTKPP-------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV  228 (298)
Q Consensus       157 ~~G~i~~~~-------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~  228 (298)
                      ++|+|....       .+.++|+||++.++. .|++||+.++...     ......++.++++.+++.+..++.      
T Consensus        53 ~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~------  121 (223)
T TIGR03740        53 TSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTL-----LGLPDSRIDEVLNIVDLTNTGKKK------  121 (223)
T ss_pred             CceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHH-----cCCCHHHHHHHHHHcCCcHHHhhh------
Confidence            999985321       247999999998765 6999999764211     122356778889999998766553      


Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                         +.+||||||||++||||++.+|++++|||||++||+.+.+.+.+.+++   .+.|+|++||+++.+.
T Consensus       122 ---~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~  188 (223)
T TIGR03740       122 ---AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ  188 (223)
T ss_pred             ---HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence               578999999999999999999999999999999999999999888764   3789999999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-33  Score=256.35  Aligned_cols=181  Identities=20%  Similarity=0.208  Sum_probs=145.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++....       +++|+||+|++||+++|+        |||  ||  |+++       +    +|++
T Consensus         6 ~~l~i~~l~~~~~~~~~~-------~l~~isl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------i----~Gl~   59 (269)
T PRK13648          6 SIIVFKNVSFQYQSDASF-------TLKDVSFNIPKGQWTSIV--------GHNGSGKSTIAKL-------M----IGIE   59 (269)
T ss_pred             ceEEEEEEEEEcCCCCCc-------ceeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            368999999999753222       899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|++|+|...           .++.++|+||+|.  ++..|+.+|+.++...... ......+++.++++.+++.++.++
T Consensus        60 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~  138 (269)
T PRK13648         60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADY  138 (269)
T ss_pred             CCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhC
Confidence            9999997532           1456999999984  4456899999875311000 000113456788899988765554


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                               .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .++|+|++||+++.+.
T Consensus       139 ---------~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~  207 (269)
T PRK13648        139 ---------EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM  207 (269)
T ss_pred             ---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh
Confidence                     3679999999999999999999999999999999999999998887764    3789999999998764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=254.29  Aligned_cols=183  Identities=21%  Similarity=0.218  Sum_probs=142.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+. ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~~~~-~~--------~l~~~sl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   55 (251)
T PRK14251          4 IISAKDVHLSYGN-YE--------ALHGISLDFEEKELTALI--------GPSGCGKSTFLRC-------L----NRMND   55 (251)
T ss_pred             eEEEEeeEEEECC-ee--------eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhccc
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    88886


Q ss_pred             -----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 -----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 -----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                           |++|+|...             .++.++|++|++.++..|++||+.++.............+++.++++.+++..
T Consensus        56 ~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  135 (251)
T PRK14251         56 DIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK  135 (251)
T ss_pred             cccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc
Confidence                 478987421             14569999999988888999999875311100000011245667788888742


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      ...     +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.  +.|+|+|||+++.+.
T Consensus       136 ~~~-----~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~  210 (251)
T PRK14251        136 ETK-----DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG  210 (251)
T ss_pred             chH-----HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence            110     0011236799999999999999999999999999999999999999998888753  789999999998754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-33  Score=251.35  Aligned_cols=176  Identities=14%  Similarity=0.132  Sum_probs=140.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         5 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   56 (237)
T PRK11614          5 MLSFDKVSAHYGK-IQ--------ALHEVSLHINQGEIVTLI--------GANGAGKTTLLGT-------L----CGDPR   56 (237)
T ss_pred             EEEEEeEEEeeCC-ce--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc-CCchhhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV-QLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~  221 (298)
                      |++|+|...            .++.++|+||++.++. .|+.+|+.++.....   .....+.+.++++.+ ++.+..++
T Consensus        57 p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~  133 (237)
T PRK11614         57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE---RDQFQERIKWVYELFPRLHERRIQ  133 (237)
T ss_pred             CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC---hhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999987521            1346999999998876 599999987531100   011123455566665 34433332


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+++.+.
T Consensus       134 ---------~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  201 (237)
T PRK11614        134 ---------RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL  201 (237)
T ss_pred             ---------chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence                     3678999999999999999999999999999999999999998887754   4899999999998543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.1e-34  Score=245.47  Aligned_cols=179  Identities=22%  Similarity=0.208  Sum_probs=150.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++++.+++++|++-..        +++|+||+++.|++++|.        |+|  ||  ++|+       +    ++++.
T Consensus         1 Ml~v~~l~K~y~~~v~--------AvrdVSF~ae~Gei~GlL--------G~NGAGKTT~LRm-------i----atlL~   53 (245)
T COG4555           1 MLEVTDLTKSYGSKVQ--------AVRDVSFEAEEGEITGLL--------GENGAGKTTLLRM-------I----ATLLI   53 (245)
T ss_pred             CeeeeehhhhccCHHh--------hhhheeEEeccceEEEEE--------cCCCCCchhHHHH-------H----HHhcc
Confidence            4788999999975333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+++..          .|++||.++.+.-++ ..|++|||.|.....+.. .....+++.++.+.+++.+.+++.  
T Consensus        54 P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~-~~~~kari~~l~k~l~l~~~~~rR--  130 (245)
T COG4555          54 PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS-RKEIKARIAELSKRLQLLEYLDRR--  130 (245)
T ss_pred             CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhChHHHHHHH--
Confidence            999998632          378899999665565 579999999864333221 122356788999999998888774  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                             ..+||.||||||+|||||+++|++++|||||||||..+...+.+.+++   .|+++|++||.++.++
T Consensus       131 -------v~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eve  197 (245)
T COG4555         131 -------VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVE  197 (245)
T ss_pred             -------HhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHH
Confidence                   678999999999999999999999999999999999999888887654   5999999999998776

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-33  Score=255.57  Aligned_cols=184  Identities=18%  Similarity=0.188  Sum_probs=142.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.
T Consensus        20 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   71 (268)
T PRK14248         20 HILEVKDLSIYYGE-KR--------AVNDISMDIEKHAVTALI--------GPSGCGKSTFLRS-------I----NRMN   71 (268)
T ss_pred             ceEEEEEEEEEeCC-ce--------eeeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhcc
Confidence            46999999999963 33        899999999999999999        999  99  9999       7    8875


Q ss_pred             c-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 P-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +     |++|+|...             .++.++|+||++.++..|++||+.++............++.+.++++.+++.
T Consensus        72 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  151 (268)
T PRK14248         72 DLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW  151 (268)
T ss_pred             cccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC
Confidence            4     688987421             1457999999998888899999986531100000001134466778888774


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~  294 (298)
                      ..+.     +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++.  +.|||++||+++.+
T Consensus       152 ~~~~-----~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~  226 (268)
T PRK14248        152 DEVK-----DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQA  226 (268)
T ss_pred             cchH-----HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHH
Confidence            2110     0011246799999999999999999999999999999999999999999888753  68999999999865


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       227 ~  227 (268)
T PRK14248        227 L  227 (268)
T ss_pred             H
Confidence            4

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-33  Score=253.62  Aligned_cols=178  Identities=23%  Similarity=0.234  Sum_probs=144.8

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         2 l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~~   53 (256)
T TIGR03873         2 LRLSRVSWSAGG-RL--------IVDGVDVTAPPGSLTGLL--------GPNGSGKSTLLRL-------L----AGALRP   53 (256)
T ss_pred             ceEEeEEEEECC-EE--------EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC
Confidence            678999999963 33        999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcch-hhhh--cCCCHHHHHHHHHHcCCchhhhh
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKE-DMIQ--KGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~-~~~~--~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      ++|+|...           .++.++|+||++.+ +..|++||+.++.... ....  .....+++.++++.+++.+..++
T Consensus        54 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  133 (256)
T TIGR03873        54 DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR  133 (256)
T ss_pred             CCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC
Confidence            99987531           13469999999864 4679999998753111 0000  01123467888999998766554


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      .         +..||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .+.|+|++||+++.+.
T Consensus       134 ~---------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  201 (256)
T TIGR03873       134 D---------MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA  201 (256)
T ss_pred             C---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3         679999999999999999999999999999999999999998888765   3789999999998774

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-33  Score=255.25  Aligned_cols=181  Identities=26%  Similarity=0.265  Sum_probs=144.0

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.|+++..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|++
T Consensus         5 ~~l~~~~l~~~~~~~~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~   57 (272)
T PRK15056          5 AGIVVNDVTVTWRNGHT--------ALRDASFTVPGGSIAALV--------GVNGSGKSTLFKA-------L----MGFV   57 (272)
T ss_pred             ceEEEEeEEEEecCCcE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            35899999999964444        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccC--------CCcEEEEcCcCCC---CCCCHHHHHccCCcch-hhhh-c-CCCHHHHHHHHHHcCCchhhh
Q psy11400        155 PLFGGTVTKPP--------RGKLFYVPQRPYM---TLGTLRDQVIYPHTKE-DMIQ-K-GITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       155 ~~~~G~i~~~~--------r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      +|++|+|....        +..++|+||++.+   +..++++|+.++.... .... . ....+.+.++++.+++.+..+
T Consensus        58 ~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~  137 (272)
T PRK15056         58 RLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH  137 (272)
T ss_pred             CCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc
Confidence            99999986321        2369999999864   3447888886542110 0000 0 112345677889999876655


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +         .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .|+|+|++||+++.+.
T Consensus       138 ~---------~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~  206 (272)
T PRK15056        138 R---------QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVT  206 (272)
T ss_pred             C---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            4         3678999999999999999999999999999999999999999888764   3899999999998654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-33  Score=255.81  Aligned_cols=183  Identities=19%  Similarity=0.171  Sum_probs=143.8

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +.+++++||++.|++ ..        +|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+
T Consensus        11 ~~~l~i~nl~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl   62 (269)
T PRK14259         11 NIIISLQNVTISYGT-FE--------AVKNVFCDIPRGKVTALI--------GPSGCGKSTVLRS-------L----NRM   62 (269)
T ss_pred             CceEEEEeEEEEECC-EE--------EEcceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            457999999999963 33        899999999999999999        999  99  9999       8    888


Q ss_pred             cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      ++     |++|+|...             .++.++|+||++.++..|++||+.+.......  ....++.+.++++.+++
T Consensus        63 ~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l  140 (269)
T PRK14259         63 NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY--TGDMDELVERSLRKAAV  140 (269)
T ss_pred             ccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCC--cHHHHHHHHHHHHHhCC
Confidence            76     588987521             13469999999988878999999875421100  01113456677888876


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      ...+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++  .+.|+|++||+++.
T Consensus       141 ~~~l~~-----~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~  215 (269)
T PRK14259        141 WDECKD-----KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ  215 (269)
T ss_pred             cchhhh-----hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            421110     11224679999999999999999999999999999999999999999988875  36899999999986


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       216 ~~  217 (269)
T PRK14259        216 AV  217 (269)
T ss_pred             HH
Confidence            64

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-33  Score=236.44  Aligned_cols=184  Identities=26%  Similarity=0.221  Sum_probs=148.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++++++..+++.-     ...+|++++|.|++||.++|+        |||  ||  |+-+       +    +|+-.
T Consensus         6 ii~~~~l~ktvg~~~~-----~l~IL~~V~L~v~~Ge~vaiV--------G~SGSGKSTLl~v-------l----AGLd~   61 (228)
T COG4181           6 IIEVHHLSKTVGQGEG-----ELSILKGVELVVKRGETVAIV--------GPSGSGKSTLLAV-------L----AGLDD   61 (228)
T ss_pred             eeehhhhhhhhcCCCc-----ceeEeecceEEecCCceEEEE--------cCCCCcHHhHHHH-------H----hcCCC
Confidence            5788888887765431     112999999999999999999        999  99  7777       7    99999


Q ss_pred             cCCceeec---------------cCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTK---------------PPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~---------------~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|..               -..+++|||||...+ ++.|-.||+..|...... ......+...+.++.+|+.+-+
T Consensus        62 ~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl  140 (228)
T COG4181          62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKRL  140 (228)
T ss_pred             CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCccccc
Confidence            99999853               125689999999865 678999999998643221 0112345578899999997644


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~  295 (298)
                      ..         ++.+|||||||||+|||||+..|++||.||||.+||..+-+++.+++    ++.|.|+|+||||+.++.
T Consensus       141 ~H---------yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~  211 (228)
T COG4181         141 TH---------YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA  211 (228)
T ss_pred             cc---------CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH
Confidence            33         47899999999999999999999999999999999999888877664    456999999999998876


Q ss_pred             hc
Q psy11400        296 HH  297 (298)
Q Consensus       296 ~~  297 (298)
                      ..
T Consensus       212 Rc  213 (228)
T COG4181         212 RC  213 (228)
T ss_pred             hh
Confidence            43

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=255.11  Aligned_cols=180  Identities=19%  Similarity=0.176  Sum_probs=146.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|++
T Consensus         6 ~~l~i~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~   57 (265)
T PRK10253          6 ARLRGEQLTLGYGK-YT--------VAENLTVEIPDGHFTAII--------GPNGCGKSTLLRT-------L----SRLM   57 (265)
T ss_pred             cEEEEEEEEEEECC-EE--------EeeecceEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence            46899999999963 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hhh--hcCCCHHHHHHHHHHcCCchhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DMI--QKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~--~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      +|++|+|...           .++.++|+||++.++ ..|++||+.++.... ...  ......+.+.++++.+++.+..
T Consensus        58 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  137 (265)
T PRK10253         58 TPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA  137 (265)
T ss_pred             CCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence            9999998532           134699999999876 469999998653111 000  0011234577889999997665


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++.         +.+||||||||++||||++.+|+++||||||++||+.+...+.+.+++    .+.|+|++||+++.+.
T Consensus       138 ~~~---------~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~  208 (265)
T PRK10253        138 DQS---------VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC  208 (265)
T ss_pred             cCC---------cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            543         679999999999999999999999999999999999999998887754    3789999999998653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.5e-33  Score=242.41  Aligned_cols=174  Identities=16%  Similarity=0.134  Sum_probs=143.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+. ..        ++ ++||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         1 ~l~~~~l~~~~~~-~~--------l~-~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~   51 (195)
T PRK13541          1 MLSLHQLQFNIEQ-KN--------LF-DLSITFLPSAITYIK--------GANGCGKSSLLRM-------I----AGIMQ   51 (195)
T ss_pred             CeEEEEeeEEECC-cE--------EE-EEEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            3789999999953 22        45 599999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC-------CCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        156 LFGGTVTKPP-------RGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       156 ~~~G~i~~~~-------r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                      |++|++....       ++.++|++|++.+ +..|++||+.+....     . ...+.+.++++.+++.+..+++     
T Consensus        52 ~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~-----~-~~~~~~~~~l~~~~l~~~~~~~-----  120 (195)
T PRK13541         52 PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI-----Y-NSAETLYAAIHYFKLHDLLDEK-----  120 (195)
T ss_pred             CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh-----c-ccHHHHHHHHHHcCCHhhhccC-----
Confidence            9999986422       2458999998855 568999999874311     1 1245677888998887655543     


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~  297 (298)
                          +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+++.++..
T Consensus       121 ----~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~  189 (195)
T PRK13541        121 ----CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA  189 (195)
T ss_pred             ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence                679999999999999999999999999999999999999999887753   589999999999877643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-33  Score=251.96  Aligned_cols=183  Identities=21%  Similarity=0.174  Sum_probs=141.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~   54 (250)
T PRK14240          3 KISVKDLDLFYGD-FQ--------ALKKINLDIEENQVTALI--------GPSGCGKSTFLRT-------L----NRMND   54 (250)
T ss_pred             eEEEEEEEEEECC-ce--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    88765


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      +     ++|+|...             .++.++|+||++.++..|+++|+.+..............+.+.++++.+++.+
T Consensus        55 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  134 (250)
T PRK14240         55 LIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD  134 (250)
T ss_pred             ccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch
Confidence            2     68987521             14569999999988778999999874211000000012345667788887743


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++  .+.|+|++||+++.+.
T Consensus       135 ~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~  209 (250)
T PRK14240        135 EVKD-----RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQAS  209 (250)
T ss_pred             hhHH-----HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence            2110     01123679999999999999999999999999999999999999999888765  3789999999998654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=2.4e-33  Score=255.68  Aligned_cols=190  Identities=18%  Similarity=0.231  Sum_probs=143.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+|+++||++.|+......+....++++|+||+|++|++++|+        |||  ||  |+++       +    +|++
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~--------G~NGsGKSTLl~~-------l----~Gl~   63 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAII--------GENGSGKSTLAKM-------L----AGMI   63 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEE--------cCCCCCHHHHHHH-------H----hCCC
Confidence            3689999999995210000000002999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhh
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YIL  219 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~  219 (298)
                      +|++|+|...           .++.++|+||++.  ++ ..|+.+++.++.............+++.++++.+++. ...
T Consensus        64 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  143 (267)
T PRK15112         64 EPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA  143 (267)
T ss_pred             CCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH
Confidence            9999997531           1246999999984  33 3488898865321100000011234677889999984 444


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++         .+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .+.|||++||+++.+.
T Consensus       144 ~~---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~  214 (267)
T PRK15112        144 SY---------YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMK  214 (267)
T ss_pred             hc---------CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence            33         2578999999999999999999999999999999999999988887765    3889999999998775


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       215 ~  215 (267)
T PRK15112        215 H  215 (267)
T ss_pred             H
Confidence            3

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=240.75  Aligned_cols=176  Identities=20%  Similarity=0.241  Sum_probs=143.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+..+|+.++|.. +.        +++++||++++||++++.        |||  ||  .|.+       +    .|+.+
T Consensus         4 ~L~a~~l~K~y~k-r~--------Vv~~Vsl~v~~GEiVGLL--------GPNGAGKTT~Fym-------i----~Glv~   55 (243)
T COG1137           4 TLVAENLAKSYKK-RK--------VVNDVSLEVNSGEIVGLL--------GPNGAGKTTTFYM-------I----VGLVR   55 (243)
T ss_pred             EEEehhhhHhhCC-ee--------eeeeeeEEEcCCcEEEEE--------CCCCCCceeEEEE-------E----EEEEe
Confidence            4788999999953 33        999999999999999999        999  99  8888       7    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |++|+|...            .|..|||+||+|.+|. .||.|||..-....+.. .......+++++++.+++.++.+.
T Consensus        56 ~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~  135 (243)
T COG1137          56 PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS  135 (243)
T ss_pred             cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC
Confidence            999998531            2556999999999996 59999997543211100 011223457799999999988877


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH---HHHhcCcEEEEEecCcc
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE---YCREVGITLFTVSHRKS  292 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~---~l~~~~~TiIiitH~l~  292 (298)
                      +         +.+||||||+|+.|||||+.+|++++||||++|+||.+...|.+   .+++.|..|+++-|+..
T Consensus       136 ~---------a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR  200 (243)
T COG1137         136 K---------AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR  200 (243)
T ss_pred             c---------ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence            5         67999999999999999999999999999999999976665554   55667999999999864

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=263.09  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=142.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++++ |+++.|.+  .        .+ |+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus         1 ~l~~-~l~k~~~~--~--------~~-~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----aGl~~   49 (352)
T PRK11144          1 MLEL-NFKQQLGD--L--------CL-TVNLTLPAQGITAIF--------GRSGAGKTSLINA-------I----SGLTR   49 (352)
T ss_pred             CeEE-EEEEEeCC--E--------EE-EEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3667 89999952  2        33 899999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|...               .+++++|+||++.+|+ .|++||+.++..       ....+++.++++.+++.++.
T Consensus        50 p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~  122 (352)
T PRK11144         50 PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLL  122 (352)
T ss_pred             CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhh
Confidence            999987521               1457999999998875 699999988642       12345688899999998766


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++.         +.+||||||||++|||||+.+|+++||||||++||+..+..+.+.+++    .++|+|+|||+++.+.
T Consensus       123 ~~~---------~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~  193 (352)
T PRK11144        123 DRY---------PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEIL  193 (352)
T ss_pred             hCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Confidence            653         679999999999999999999999999999999999999988887764    3799999999998654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-33  Score=251.25  Aligned_cols=184  Identities=19%  Similarity=0.164  Sum_probs=142.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~~~~-~~--------il~~~s~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   55 (251)
T PRK14249          4 KIKIRGVNFFYHK-HQ--------VLKNINMDFPERQITAII--------GPSGCGKSTLLRA-------L----NRMND   55 (251)
T ss_pred             eEEEEEEEEEECC-ee--------EecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccC
Confidence            5889999999963 33        899999999999999999        999  99  9999       8    89988


Q ss_pred             cC-----Cceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 LF-----GGTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~~-----~G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |+     +|+|..             ..++.++|+||++.+++.|++||+.++............++.+.++++.+++.+
T Consensus        56 ~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  135 (251)
T PRK14249         56 IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD  135 (251)
T ss_pred             ccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch
Confidence            86     588642             124579999999988888999999875321000000011234566677777653


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++  .++|+|++||+++.+.
T Consensus       136 ~l~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~  210 (251)
T PRK14249        136 EVKD-----NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAA  210 (251)
T ss_pred             hhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            2211     01224679999999999999999999999999999999999999998888765  3789999999998765


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       211 ~  211 (251)
T PRK14249        211 R  211 (251)
T ss_pred             h
Confidence            3

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=254.28  Aligned_cols=183  Identities=20%  Similarity=0.168  Sum_probs=142.7

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +|+|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus        11 ~~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~   62 (258)
T PRK14268         11 PQIKVENLNLWYGE-KQ--------ALKNVSMQIPKNSVTALI--------GPSGCGKSTFIRC-------L----NRMN   62 (258)
T ss_pred             eeEEEeeeEEEeCC-ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            46999999999953 33        899999999999999999        999  99  9999       8    8888


Q ss_pred             cc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 PL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +|     ++|+|...             .++.++|+||++.++..|++||+.++...... ......+.+.++++.+++.
T Consensus        63 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~  141 (258)
T PRK14268         63 DLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGA-NKKDLDGVVENALRSAALW  141 (258)
T ss_pred             CcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCC
Confidence            74     78987421             14569999999988779999999864211000 0001123567788888874


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~  294 (298)
                      .....     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+
T Consensus       142 ~~~~~-----~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~  216 (258)
T PRK14268        142 DETSD-----RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA  216 (258)
T ss_pred             cchhh-----hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH
Confidence            22110     01123679999999999999999999999999999999999999999888765  378999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       217 ~  217 (258)
T PRK14268        217 A  217 (258)
T ss_pred             H
Confidence            4

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-33  Score=254.70  Aligned_cols=185  Identities=17%  Similarity=0.157  Sum_probs=144.5

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ..+++++|+++.|++ ..        +|+|+||++++||+++|+        |+|  ||  |+++       +    +|+
T Consensus        18 ~~~l~~~nl~~~~~~-~~--------il~~vsl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl   69 (267)
T PRK14237         18 EIALSTKDLHVYYGK-KE--------AIKGIDMQFEKNKITALI--------GPSGSGKSTYLRS-------L----NRM   69 (267)
T ss_pred             CeEEEEeeEEEEECC-ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhc
Confidence            357999999999953 33        899999999999999999        999  99  9999       8    888


Q ss_pred             cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      ++     |++|+|...             .++.|+|+||++.++..|++||+.++............++++.++++.+++
T Consensus        70 ~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l  149 (267)
T PRK14237         70 NDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL  149 (267)
T ss_pred             cCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence            86     478987421             145699999999888789999998753210000000123456777888888


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      .+.+..     .....+.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++  .+.|+|++||+++.
T Consensus       150 ~~~i~~-----~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  224 (267)
T PRK14237        150 WDQVKD-----DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ  224 (267)
T ss_pred             Cchhhh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            532211     11124679999999999999999999999999999999999999999888765  36899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       225 ~~  226 (267)
T PRK14237        225 AA  226 (267)
T ss_pred             HH
Confidence            63

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-33  Score=252.16  Aligned_cols=183  Identities=19%  Similarity=0.193  Sum_probs=141.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc-
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW-  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~-  154 (298)
                      +++++||++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    .|+. 
T Consensus         5 ~l~~~~l~~~~~~-~~--------~l~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (252)
T PRK14239          5 ILQVSDLSVYYNK-KK--------ALNSVSLDFYPNEITALI--------GPSGSGKSTLLRS-------I----NRMND   56 (252)
T ss_pred             eEEEEeeEEEECC-ee--------eeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence            6899999999963 33        899999999999999999        999  99  9999       7    8874 


Q ss_pred             -cc---CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        155 -PL---FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       155 -~~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                       +|   ++|+|...             .++.++|+||++.++..|++||+.++............++++.++++.+++..
T Consensus        57 ~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  136 (252)
T PRK14239         57 LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD  136 (252)
T ss_pred             cCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch
Confidence             35   48887421             14569999999988889999999864211000000111345667788888743


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++  .++|+|++||+++.+.
T Consensus       137 ~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  211 (252)
T PRK14239        137 EVKD-----RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS  211 (252)
T ss_pred             hHHH-----HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHH
Confidence            2110     01124679999999999999999999999999999999999999999988875  3689999999998654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=252.16  Aligned_cols=183  Identities=18%  Similarity=0.205  Sum_probs=141.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--  153 (298)
                      +++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+  
T Consensus         3 ~l~~~~~~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~~   54 (250)
T PRK14245          3 KIDARDVNFWYGD-FH--------ALKGISMEIEEKSVVAFI--------GPSGCGKSTFLRL-------F----NRMND   54 (250)
T ss_pred             EEEEEEEEEEECC-Ee--------EEeeeeEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hhhhc
Confidence            5899999999963 33        899999999999999999        999  99  9999       7    775  


Q ss_pred             -ccc--CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        154 -WPL--FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       154 -~~~--~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                       .+|  ++|+|...             .++.++|+||++.++..|+.||+.++.............+.+.++++.+++.+
T Consensus        55 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  134 (250)
T PRK14245         55 LIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWD  134 (250)
T ss_pred             ccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc
Confidence             354  48887421             13469999999988878999999864211000000012345678888888854


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++  .++|||++||+++.+.
T Consensus       135 ~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~  209 (250)
T PRK14245        135 EVKD-----KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAA  209 (250)
T ss_pred             chhh-----hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence            2211     01123679999999999999999999999999999999999999999988875  3789999999998764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-33  Score=267.66  Aligned_cols=163  Identities=21%  Similarity=0.185  Sum_probs=135.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------------
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------------  164 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------------  164 (298)
                      +++|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|+|...               
T Consensus        43 ~L~~isl~i~~Gei~~Lv--------G~NGsGKSTLLr~-------I----~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~  103 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIM--------GLSGSGKSTMVRL-------L----NRLIEPTRGQVLIDGVDIAKISDAELREV  103 (400)
T ss_pred             EEEeEEEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----HcCCCCCCCEEEECCEECCcCCHHHHHHH
Confidence            799999999999999999        999  99  9999       8    99999999998531               


Q ss_pred             CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400        165 PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV  243 (298)
Q Consensus       165 ~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl  243 (298)
                      .+++++|+||++.+|. .|++||+.++...... ......+++.++++.+++.++.++.         +.+||||||||+
T Consensus       104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~-~~~~~~~~~~e~L~~~gL~~~~~~~---------~~~LSgGq~QRv  173 (400)
T PRK10070        104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSY---------PDELSGGMRQRV  173 (400)
T ss_pred             HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhcC---------cccCCHHHHHHH
Confidence            1247999999998875 6999999875321100 0011235677889999998766553         679999999999


Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +|||||+.+|++|||||||++||+.++..+.+.+++    .++|+|++||+++.+.
T Consensus       174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~  229 (400)
T PRK10070        174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM  229 (400)
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence            999999999999999999999999999998887754    4899999999998764

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=251.23  Aligned_cols=184  Identities=19%  Similarity=0.181  Sum_probs=142.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|++
T Consensus         3 ~~l~~~nl~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   54 (252)
T PRK14256          3 NKVKLEQLNVHFGK-NH--------AVKDVSMDFPENSVTAII--------GPSGCGKSTVLRS-------I----NRMH   54 (252)
T ss_pred             cEEEEEEEEEEeCC-ee--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhcc
Confidence            46899999999963 33        899999999999999999        999  99  9999       8    8887


Q ss_pred             c--c---CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        155 P--L---FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       155 ~--~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      +  |   ++|+|...             .++.++|+||++.++. .|++||+.++............++.+.++++.+++
T Consensus        55 ~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l  134 (252)
T PRK14256         55 DLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVAL  134 (252)
T ss_pred             cCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence            5  3   58886421             1456999999998876 69999997643110000001113456778888888


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~  293 (298)
                      ......     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.  ++|+|++||+++.
T Consensus       135 ~~~~~~-----~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~  209 (252)
T PRK14256        135 WDEVKD-----RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ  209 (252)
T ss_pred             chhhhH-----HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence            542211     011236799999999999999999999999999999999999999998887753  6899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       210 ~~  211 (252)
T PRK14256        210 AA  211 (252)
T ss_pred             HH
Confidence            64

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=255.41  Aligned_cols=184  Identities=20%  Similarity=0.193  Sum_probs=140.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|++
T Consensus        23 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~I~--------G~nGsGKSTLl~~-------i----~Gl~   74 (271)
T PRK14238         23 VVFDTQNLNLWYGE-DH--------ALKNINLDIHENEVTAII--------GPSGCGKSTYIKT-------L----NRMV   74 (271)
T ss_pred             eEEEEeeeEEEECC-cc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhc
Confidence            47999999999963 33        899999999999999999        999  99  9999       8    8887


Q ss_pred             c-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 P-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +     |++|+|...             .++.++|+||++.++..|++||+.++.............+.+.++++.+++.
T Consensus        75 ~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  154 (271)
T PRK14238         75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW  154 (271)
T ss_pred             cCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc
Confidence            6     688987421             1456999999998888899999986421100000000123345666666543


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~  294 (298)
                      +.+.     +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++.  ++|+|++||+++.+
T Consensus       155 ~~l~-----~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i  229 (271)
T PRK14238        155 DELK-----DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA  229 (271)
T ss_pred             chHH-----HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH
Confidence            2111     0112246799999999999999999999999999999999999999999887653  78999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       230 ~  230 (271)
T PRK14238        230 A  230 (271)
T ss_pred             H
Confidence            4

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=3.2e-33  Score=250.62  Aligned_cols=179  Identities=19%  Similarity=0.151  Sum_probs=140.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW--  154 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~--  154 (298)
                      ++++|+++.|++ ..        +++|+||+|++||+++|+        |||  ||  |+++       +    +|+.  
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~~   52 (243)
T TIGR01978         1 LKIKDLHVSVED-KE--------ILKGVNLTVKKGEIHAIM--------GPNGSGKSTLSKT-------I----AGHPSY   52 (243)
T ss_pred             CeEeeEEEEECC-EE--------EEeccceEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    8884  


Q ss_pred             ccCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhh------hhcCCCHHHHHHHHHHcCC
Q psy11400        155 PLFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDM------IQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~------~~~~~~~~~i~~~l~~~~l  215 (298)
                      +|++|+|...            .+..++|+||++.++. .|+.+|+.+.......      .......+++.++++.+++
T Consensus        53 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  132 (243)
T TIGR01978        53 EVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM  132 (243)
T ss_pred             CCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC
Confidence            7899998531            1234899999998775 5999998764211000      0000012456788888888


Q ss_pred             c-hhhhhcCCcccccccCC-CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11400        216 G-YILNREKGWDTVADWID-VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR  290 (298)
Q Consensus       216 ~-~~~~~~~g~d~~~~~~~-~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~  290 (298)
                      . ...+++         +. .||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++   .++|+|++||+
T Consensus       133 ~~~~~~~~---------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~  203 (243)
T TIGR01978       133 DEEFLNRS---------VNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY  203 (243)
T ss_pred             chhhcccc---------cccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence            6 343332         44 5999999999999999999999999999999999999999988765   37899999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      ++.+..
T Consensus       204 ~~~~~~  209 (243)
T TIGR01978       204 QRLLNY  209 (243)
T ss_pred             HHHHHh
Confidence            997753

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-33  Score=251.32  Aligned_cols=183  Identities=19%  Similarity=0.167  Sum_probs=143.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~   54 (250)
T PRK14247          3 KIEIRDLKVSFGQ-VE--------VLDGVNLEIPDNTITALM--------GPSGSGKSTLLRV-------F----NRLIE   54 (250)
T ss_pred             eEEEEeeEEEECC-ee--------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            4889999999963 33        899999999999999999        999  99  9999       8    89887


Q ss_pred             c-----CCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |     ++|+|...           .++.|+|+||++.++ ..|+.||+.++....... ......+.+.++++.+++.+
T Consensus        55 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  134 (250)
T PRK14247         55 LYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD  134 (250)
T ss_pred             CCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc
Confidence            4     68987421           245799999999754 579999998753211000 00111345778889998854


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+.
T Consensus       135 ~~~~-----~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~  209 (250)
T PRK14247        135 EVKD-----RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA  209 (250)
T ss_pred             chhh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            2210     01123679999999999999999999999999999999999999999988875  3789999999998764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=6.1e-33  Score=252.07  Aligned_cols=179  Identities=17%  Similarity=0.183  Sum_probs=143.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       |    +|+++
T Consensus         4 ~l~~~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~   55 (262)
T PRK09984          4 IIRVEKLAKTFNQ-HQ--------ALHAVDLNIHHGEMVALL--------GPSGSGKSTLLRH-------L----SGLIT   55 (262)
T ss_pred             EEEEeeEEEEeCC-eE--------EEecceEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            6899999999963 33        899999999999999999        999  99  9999       8    99998


Q ss_pred             cC---Cceeecc----------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-h------hhcCCCHHHHHH
Q psy11400        156 LF---GGTVTKP----------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-M------IQKGITDADLTE  208 (298)
Q Consensus       156 ~~---~G~i~~~----------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-~------~~~~~~~~~i~~  208 (298)
                      |+   +|+|...                .++.++|+||++.++. .|+.+|+.++..... .      ........++.+
T Consensus        56 p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (262)
T PRK09984         56 GDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ  135 (262)
T ss_pred             CCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHH
Confidence            76   4876421                1346999999998766 699999987531100 0      000112346788


Q ss_pred             HHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEE
Q psy11400        209 YLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITL  284 (298)
Q Consensus       209 ~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~Ti  284 (298)
                      +++.+++.+..++.         +.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++    .|+|+
T Consensus       136 ~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv  206 (262)
T PRK09984        136 ALTRVGMVHFAHQR---------VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV  206 (262)
T ss_pred             HHHHcCCHHHHhCC---------ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            99999997665553         678999999999999999999999999999999999999988888764    37999


Q ss_pred             EEEecCcchhh
Q psy11400        285 FTVSHRKSLWT  295 (298)
Q Consensus       285 IiitH~l~~~~  295 (298)
                      |++||+++.+.
T Consensus       207 ii~tH~~~~~~  217 (262)
T PRK09984        207 VVTLHQVDYAL  217 (262)
T ss_pred             EEEeCCHHHHH
Confidence            99999998653

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.2e-33  Score=254.92  Aligned_cols=184  Identities=19%  Similarity=0.206  Sum_probs=145.4

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ...++++|+++.|++ ..        +|+|+||+|++|++++|+        |+|  ||  |+++       +    +|+
T Consensus        37 ~~~l~i~~l~~~~~~-~~--------il~~is~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl   88 (285)
T PRK14254         37 ETVIEARDLNVFYGD-EQ--------ALDDVSMDIPENQVTAMI--------GPSGCGKSTFLRC-------I----NRM   88 (285)
T ss_pred             CceEEEEEEEEEECC-Ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            457999999999963 33        899999999999999999        999  99  9999       8    898


Q ss_pred             cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      ++     |++|+|...             .++.++|+||++.++..|+.||+.++......  .....+++.++++.+++
T Consensus        89 ~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l  166 (285)
T PRK14254         89 NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY--DGDIDERVEESLRRAAL  166 (285)
T ss_pred             CCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC--cHHHHHHHHHHHHHcCC
Confidence            86     588987421             14579999999988878999999864211000  01123467788888888


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~  293 (298)
                      ...+..     .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++.  +.|+|++||+++.
T Consensus       167 ~~~i~~-----~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~  241 (285)
T PRK14254        167 WDEVKD-----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ  241 (285)
T ss_pred             CchhHH-----HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            532110     011236799999999999999999999999999999999999999999888763  5899999999987


Q ss_pred             hhh
Q psy11400        294 WTH  296 (298)
Q Consensus       294 ~~~  296 (298)
                      +..
T Consensus       242 i~~  244 (285)
T PRK14254        242 AAR  244 (285)
T ss_pred             HHh
Confidence            653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.7e-33  Score=271.22  Aligned_cols=191  Identities=27%  Similarity=0.294  Sum_probs=152.5

Q ss_pred             CCcEEEeeeeEecCCCCCCCCC--CcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDS--RWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~--~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      +..++++|+++.|...+.-++.  ...++++||||++++||+++||        |+|  ||  |.|+       +    .
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglV--------GeSGsGKSTlar~-------i----~  338 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLV--------GESGSGKSTLARI-------L----A  338 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence            3467899999999742200001  1224899999999999999999        999  99  9999       8    9


Q ss_pred             cccccCCceeecc-------------CCCcEEEEcCcCCC---CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        152 QLWPLFGGTVTKP-------------PRGKLFYVPQRPYM---TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       152 ~l~~~~~G~i~~~-------------~r~~i~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      |+.+|++|.|...             .++++-+|||+|+.   +..||.+++..+.............+++.++++.++|
T Consensus       339 gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL  418 (539)
T COG1123         339 GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL  418 (539)
T ss_pred             CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCC
Confidence            9999999998531             24679999999974   3479999998775422111111223568889999999


Q ss_pred             ch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        216 GY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       216 ~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      .. ++++         ++++||||||||+||||||+.+|+++|+|||||+||+.+...+.+++++    .|.|.|+||||
T Consensus       419 ~~~~l~r---------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD  489 (539)
T COG1123         419 PPEFLDR---------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD  489 (539)
T ss_pred             CHHHHhc---------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence            75 5555         4789999999999999999999999999999999999999998888764    59999999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      ++.+++
T Consensus       490 l~vV~~  495 (539)
T COG1123         490 LAVVRY  495 (539)
T ss_pred             HHHHHh
Confidence            998875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=4.7e-33  Score=247.46  Aligned_cols=177  Identities=19%  Similarity=0.196  Sum_probs=139.3

Q ss_pred             cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+.|+||++.|+...  .+       +++|+||+|++||+++|+        |||  ||  |+++       +    .|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLlk~-------l----~G~   56 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYAR-------ILNDVSLHVESGQVMAIL--------GSSGSGKTTLLDA-------I----SGR   56 (226)
T ss_pred             cceeecceeeeecCccccc-------cccCceEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCc
Confidence            367999999997542  22       999999999999999999        999  99  9999       8    899


Q ss_pred             cc---cCCceeecc--------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchh--hhhcCCCHHHHHH-HHHHcCCchh
Q psy11400        154 WP---LFGGTVTKP--------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKED--MIQKGITDADLTE-YLQKVQLGYI  218 (298)
Q Consensus       154 ~~---~~~G~i~~~--------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~~i~~-~l~~~~l~~~  218 (298)
                      ++   |++|+|...        .++.++|+||++.++.. |++||+.++.....  ..........+.+ .++.+++.+.
T Consensus        57 ~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  136 (226)
T cd03234          57 VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI  136 (226)
T ss_pred             cCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhh
Confidence            88   899987531        35679999999988765 99999986421100  0000001122334 6777776654


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCc
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRK  291 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l  291 (298)
                      .++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .+.|+|++||++
T Consensus       137 ~~~---------~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~  203 (226)
T cd03234         137 GGN---------LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP  203 (226)
T ss_pred             hcc---------cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            443         3679999999999999999999999999999999999999999888764   378999999998

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=5.7e-33  Score=251.72  Aligned_cols=179  Identities=21%  Similarity=0.237  Sum_probs=141.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         6 ~l~~~~l~~~~~~-~~--------il~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   57 (258)
T PRK11701          6 LLSVRGLTKLYGP-RK--------GCRDVSFDLYPGEVLGIV--------GESGSGKTTLLNA-------L----SARLA   57 (258)
T ss_pred             eEEEeeeEEEcCC-ce--------eeeeeeEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6899999999964 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC--------------------CCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400        156 LFGGTVTKPP--------------------RGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK  212 (298)
Q Consensus       156 ~~~G~i~~~~--------------------r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~  212 (298)
                      |++|+|....                    ++.++|+||++.  ++ ..|+.+|+.++...............+.++++.
T Consensus        58 p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  137 (258)
T PRK11701         58 PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLER  137 (258)
T ss_pred             CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            9999874211                    235999999984  33 358888886532100000001113456778888


Q ss_pred             cCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        213 VQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       213 ~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      +++.+ ..++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .|.|+|++
T Consensus       138 ~~l~~~~~~~---------~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~i  208 (258)
T PRK11701        138 VEIDAARIDD---------LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV  208 (258)
T ss_pred             cCCChhHHhC---------CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence            88863 4443         3689999999999999999999999999999999999999998887654    38899999


Q ss_pred             ecCcchhh
Q psy11400        288 SHRKSLWT  295 (298)
Q Consensus       288 tH~l~~~~  295 (298)
                      ||+++.+.
T Consensus       209 sH~~~~~~  216 (258)
T PRK11701        209 THDLAVAR  216 (258)
T ss_pred             eCCHHHHH
Confidence            99998775

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=7.8e-33  Score=236.60  Aligned_cols=143  Identities=23%  Similarity=0.340  Sum_probs=125.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+.....       +++|+||++++||+++|+        |||  ||  |+++       +    +|+.+|
T Consensus         1 i~~~~l~~~~~~~~~~-------~l~~~~~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~   54 (173)
T cd03246           1 LEVENVSFRYPGAEPP-------VLRNVSFSIEPGESLAII--------GPSGSGKSTLARL-------I----LGLLRP   54 (173)
T ss_pred             CEEEEEEEEcCCCCCc-------ceeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccCC
Confidence            4689999999743322       899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|+|...           .+++++|++|++.++..|++||+                                      
T Consensus        55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l--------------------------------------   96 (173)
T cd03246          55 TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------------------   96 (173)
T ss_pred             CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC--------------------------------------
Confidence            99997532           14579999999987777888876                                      


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                               ||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .++|+|++||+++.+..
T Consensus        97 ---------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~  161 (173)
T cd03246          97 ---------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS  161 (173)
T ss_pred             ---------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence                     899999999999999999999999999999999999999888764   37899999999987653

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-33  Score=250.81  Aligned_cols=183  Identities=21%  Similarity=0.181  Sum_probs=142.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.+
T Consensus         4 ~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   55 (251)
T PRK14270          4 KMESKNLNLWYGE-KQ--------ALNDINLPIYENKITALI--------GPSGCGKSTFLRC-------L----NRMND   55 (251)
T ss_pred             EEEEEEeEEEECC-ee--------eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhccC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    88876


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |     ++|+|...             .++.++|+||++.++..|++||+.++.............+++.++++.+++.+
T Consensus        56 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  135 (251)
T PRK14270         56 LISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD  135 (251)
T ss_pred             cccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch
Confidence            5     78987521             14569999999988889999999865311100000011245667888888743


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.  +.|+|++||+++.+.
T Consensus       136 ~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~  210 (251)
T PRK14270        136 EVKD-----DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQAS  210 (251)
T ss_pred             hhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHH
Confidence            2110     011236799999999999999999999999999999999999999998887753  689999999998754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-33  Score=252.41  Aligned_cols=184  Identities=19%  Similarity=0.163  Sum_probs=142.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|+. ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.
T Consensus        11 ~~l~i~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~   62 (259)
T PRK14274         11 EVYQINGMNLWYGQ-HH--------ALKNINLSIPENEVTAII--------GPSGCGKSTFIKT-------L----NLMI   62 (259)
T ss_pred             ceEEEeeEEEEECC-ee--------eEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhc
Confidence            46999999999963 33        899999999999999999        999  99  9999       8    8887


Q ss_pred             c--c---CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 P--L---FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~--~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +  |   ++|+|...             .++.++|+||++.++..|++||+.+..............+++.++++.+++.
T Consensus        63 ~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  142 (259)
T PRK14274         63 QMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALW  142 (259)
T ss_pred             cCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence            6  3   58887421             1356999999998887899999986421100000001123466778888875


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~  294 (298)
                      +....     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.  ++|+|++||+++.+
T Consensus       143 ~~~~~-----~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~  217 (259)
T PRK14274        143 DEVKD-----RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA  217 (259)
T ss_pred             hhhhh-----hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence            32110     011246799999999999999999999999999999999999999998887763  78999999999875


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       218 ~  218 (259)
T PRK14274        218 A  218 (259)
T ss_pred             H
Confidence            4

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-33  Score=249.81  Aligned_cols=184  Identities=21%  Similarity=0.199  Sum_probs=142.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   54 (249)
T PRK14253          3 KFNIENLDLFYGE-NQ--------ALKSINLPIPARQVTALI--------GPSGCGKSTLLRC-------L----NRMND   54 (249)
T ss_pred             eEEEeccEEEECC-ee--------eeecceEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhcc
Confidence            4889999999963 33        899999999999999999        999  99  9999       8    88887


Q ss_pred             c-----CCceeecc------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        156 L-----FGGTVTKP------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       156 ~-----~~G~i~~~------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      |     ++|++...            .++.++|+||++.++..|+.||+.+..............+++.++++.+++.+.
T Consensus        55 ~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (249)
T PRK14253         55 LIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE  134 (249)
T ss_pred             cccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh
Confidence            5     58886421            135699999999888899999998753111000000112345667777877532


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      +..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++.  +.|+|++||+++.+..
T Consensus       135 ~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  209 (249)
T PRK14253        135 VKD-----RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARR  209 (249)
T ss_pred             hhH-----HhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH
Confidence            210     011236799999999999999999999999999999999999999998887753  6899999999987653

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=8.7e-33  Score=237.25  Aligned_cols=146  Identities=22%  Similarity=0.256  Sum_probs=127.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+....+       +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~~~~~~~~~~~~~~~-------~l~~i~~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~   54 (178)
T cd03247           1 LSINNVSFSYPEQEQQ-------VLKNLSLELKQGEKIALL--------GRSGSGKSTLLQL-------L----TGDLKP   54 (178)
T ss_pred             CEEEEEEEEeCCCCcc-------ceEEEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCCC
Confidence            4689999999653222       899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...          .++.++|+||++.++..|++||+                                       
T Consensus        55 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i---------------------------------------   95 (178)
T cd03247          55 QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL---------------------------------------   95 (178)
T ss_pred             CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh---------------------------------------
Confidence            99998532          14569999999988777888876                                       


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                           +.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+++  .+.|+|++||+++.+..
T Consensus        96 -----~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  162 (178)
T cd03247          96 -----GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH  162 (178)
T ss_pred             -----cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence                 147999999999999999999999999999999999999999988875  37899999999987753

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-33  Score=250.13  Aligned_cols=183  Identities=20%  Similarity=0.149  Sum_probs=142.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~~   54 (250)
T PRK14262          3 IIEIENFSAYYGE-KK--------AVKNVTMKIFKNQITAII--------GPSGCGKTTLLRS-------I----NRMND   54 (250)
T ss_pred             eEEEEeeEEEeCC-ce--------eEeeeeEeecCCCEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    88887


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |     ++|+|...             .++.++|+||++.++..|++||+.++............++.+.++++.+++..
T Consensus        55 ~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  134 (250)
T PRK14262         55 HIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD  134 (250)
T ss_pred             CCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc
Confidence            3     78987521             14579999999988889999999864211000000012334667788888754


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+.
T Consensus       135 ~~~~-----~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~  209 (250)
T PRK14262        135 EVKS-----ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI  209 (250)
T ss_pred             hhHH-----HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            2211     01124679999999999999999999999999999999999999999888765  3789999999998653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-33  Score=261.15  Aligned_cols=186  Identities=19%  Similarity=0.163  Sum_probs=140.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|+....     +.++|+|+||+|++||+++|+        |+|  ||  |+++       +    .|+++
T Consensus         3 ~L~v~~l~~~~~~~~~-----~~~~l~~vsl~i~~Ge~~~lv--------G~sGsGKSTL~~~-------l----~Gll~   58 (326)
T PRK11022          3 LLNVDKLSVHFGDESA-----PFRAVDRISYSVKQGEVVGIV--------GESGSGKSVSSLA-------I----MGLID   58 (326)
T ss_pred             eEEEeCeEEEECCCCc-----cEEEEeeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCC
Confidence            4899999999964320     012999999999999999999        999  99  8898       7    88886


Q ss_pred             ----cCCceeecc---------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400        156 ----LFGGTVTKP---------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV  213 (298)
Q Consensus       156 ----~~~G~i~~~---------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~  213 (298)
                          +++|+|...               .++.|+||||+|.  +. ..|+.+++..+.............+++.++++.+
T Consensus        59 ~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~  138 (326)
T PRK11022         59 YPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV  138 (326)
T ss_pred             CCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence                378887421               1246999999984  33 3588777654321100000111235678899999


Q ss_pred             CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400        214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH  289 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH  289 (298)
                      ++.+....      ...++.+|||||||||+|||||+.+|++||+||||++||+.++..+++++++    .|.|+|+|||
T Consensus       139 gL~~~~~~------l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTH  212 (326)
T PRK11022        139 GIPDPASR------LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH  212 (326)
T ss_pred             CCCChHHH------HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            99642211      1124789999999999999999999999999999999999999998887654    4899999999


Q ss_pred             Ccchhh
Q psy11400        290 RKSLWT  295 (298)
Q Consensus       290 ~l~~~~  295 (298)
                      +++.+.
T Consensus       213 dl~~~~  218 (326)
T PRK11022        213 DLALVA  218 (326)
T ss_pred             CHHHHH
Confidence            999875

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.3e-33  Score=249.07  Aligned_cols=177  Identities=25%  Similarity=0.240  Sum_probs=144.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|++++|++ ..        +++|+||++.+||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~i~~l~~~~~~-~~--------il~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~~   52 (237)
T TIGR00968         1 IEIANISKRFGS-FQ--------ALDDVNLEVPTGSLVALL--------GPSGSGKSTLLRI-------I----AGLEQP   52 (237)
T ss_pred             CEEEEEEEEECC-ee--------eeeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|++...         .++.++|+||++.++. .|+.||+.+....... ......+.+.++++.+++.++.++.    
T Consensus        53 ~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~----  127 (237)
T TIGR00968        53 DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH-PKAKIKARVEELLELVQLEGLGDRY----  127 (237)
T ss_pred             CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCC----
Confidence            99997531         2457999999998876 5999999864321100 0011234567888988887665543    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~  295 (298)
                           +.+||+||+||++|||||+++|+++||||||++||+.+++.+.+.+++   . ++|+|++||+++.+.
T Consensus       128 -----~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~  195 (237)
T TIGR00968       128 -----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAM  195 (237)
T ss_pred             -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                 578999999999999999999999999999999999999999888765   2 799999999998753

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.5e-33  Score=259.91  Aligned_cols=163  Identities=23%  Similarity=0.300  Sum_probs=134.8

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc----------CCCcE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----------PRGKL  169 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----------~r~~i  169 (298)
                      +|+|+||+|++|++++|+        |||  ||  |+++       +    .|+++|++|+|...          .++++
T Consensus         8 ~l~~vs~~i~~Ge~~~l~--------G~NGaGKSTLl~~-------l----~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i   68 (302)
T TIGR01188         8 AVDGVNFKVREGEVFGFL--------GPNGAGKTTTIRM-------L----TTLLRPTSGTARVAGYDVVREPRKVRRSI   68 (302)
T ss_pred             EEeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceEEEECCEEcccCHHHHHhhc
Confidence            899999999999999999        999  99  9999       8    99999999998532          14569


Q ss_pred             EEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400        170 FYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       170 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa  248 (298)
                      +|+||++.++. .|++||+.+....... ......+++.++++.+++.+..+++         +.+||||||||++||||
T Consensus        69 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~a  138 (302)
T TIGR01188        69 GIVPQYASVDEDLTGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRP---------VGTYSGGMRRRLDIAAS  138 (302)
T ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCc---------hhhCCHHHHHHHHHHHH
Confidence            99999998875 5999999764211100 0011134578889999997665543         67999999999999999


Q ss_pred             HhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        249 FYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      |+++|++|||||||+|||+.+...+.+++++   .|+|+|++||+++.+.
T Consensus       139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~  188 (302)
T TIGR01188       139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEAD  188 (302)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence            9999999999999999999999999888765   3799999999998765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-33  Score=255.16  Aligned_cols=185  Identities=19%  Similarity=0.173  Sum_probs=142.8

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ...++++||++.|+. ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    .|+
T Consensus        37 ~~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------L----~Gl   88 (286)
T PRK14275         37 KPHVVAKNFSIYYGE-FE--------AVKKVNADILSKYVTAII--------GPSGCGKSTFLRA-------I----NRM   88 (286)
T ss_pred             ceEEEEeeeEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            346899999999953 33        899999999999999999        999  99  9999       8    887


Q ss_pred             cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      .+     |++|+|...             .++.++|+||++.++..|+.||+.++.............+.+.++++.+++
T Consensus        89 ~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l  168 (286)
T PRK14275         89 NDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL  168 (286)
T ss_pred             cccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCC
Confidence            54     488987421             145799999999888789999998753110000000112456677888877


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~  293 (298)
                      ...+.     +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++.  ++|||++||+++.
T Consensus       169 ~~~l~-----~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~  243 (286)
T PRK14275        169 WDEVS-----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ  243 (286)
T ss_pred             ccchh-----hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            42110     0111246799999999999999999999999999999999999999999888753  6899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       244 ~~  245 (286)
T PRK14275        244 AS  245 (286)
T ss_pred             HH
Confidence            64

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=4.4e-33  Score=248.70  Aligned_cols=177  Identities=21%  Similarity=0.211  Sum_probs=145.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      +.++|++++|+. ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------il~~i~~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~g~~~~   52 (232)
T cd03300           1 IELENVSKFYGG-FV--------ALDGVSLDIKEGEFFTLL--------GPSGCGKTTLLRL-------I----AGFETP   52 (232)
T ss_pred             CEEEeEEEEeCC-ee--------eeccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|...         .++.++|+||++.++. .|+.+|+.+...... .......+++.++++.+++.++.++.    
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~----  127 (232)
T cd03300          53 TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK-LPKAEIKERVAEALDLVQLEGYANRK----  127 (232)
T ss_pred             CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhcCC----
Confidence            99987532         2457999999998875 599999976421100 00011234677888999998766553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||+|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .++|+|++||+++.+.
T Consensus       128 -----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~  195 (232)
T cd03300         128 -----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEAL  195 (232)
T ss_pred             -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence                 579999999999999999999999999999999999999999888764    2799999999998754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=250.92  Aligned_cols=183  Identities=21%  Similarity=0.196  Sum_probs=142.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+. ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~   55 (253)
T PRK14267          4 AIETVNLRVYYGS-NH--------VIKGVDLKIPQNGVFALM--------GPSGCGKSTLLRT-------F----NRLLE   55 (253)
T ss_pred             eEEEEeEEEEeCC-ee--------eeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99988


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCC
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQL  215 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l  215 (298)
                      |     ++|+|...             .+++++|+||++.++. .|+.||+.++....... ......+.+.++++.+++
T Consensus        56 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  135 (253)
T PRK14267         56 LNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAAL  135 (253)
T ss_pred             cccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCC
Confidence            7     48987421             1356999999998876 59999998643111000 000112456778888887


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      ...+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.
T Consensus       136 ~~~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  210 (253)
T PRK14267        136 WDEVKD-----RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ  210 (253)
T ss_pred             ccchhh-----hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence            532110     01224679999999999999999999999999999999999999999888765  36899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       211 ~~  212 (253)
T PRK14267        211 AA  212 (253)
T ss_pred             HH
Confidence            64

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-33  Score=251.12  Aligned_cols=183  Identities=20%  Similarity=0.168  Sum_probs=141.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|++ ..        +|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~i~~v~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----aGl~~   55 (258)
T PRK14241          4 RIDVKDLNIYYGS-FH--------AVEDVNLNIEPRSVTAFI--------GPSGCGKSTVLRT-------L----NRMHE   55 (258)
T ss_pred             cEEEeeEEEEECC-Ee--------eeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    88886


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      |     ++|+|...             .++.++|+||++.++. .|++||+.++............++.+.++++.+++.
T Consensus        56 ~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  135 (258)
T PRK14241         56 VIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLW  135 (258)
T ss_pred             cccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence            4     68987531             1356999999998775 699999976431100000011134567788888874


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~  294 (298)
                      ..+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+
T Consensus       136 ~~~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~  210 (258)
T PRK14241        136 NEVKD-----RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQA  210 (258)
T ss_pred             hhhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            32110     01123679999999999999999999999999999999999999999888765  368999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       211 ~  211 (258)
T PRK14241        211 A  211 (258)
T ss_pred             H
Confidence            4

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=7.9e-33  Score=243.95  Aligned_cols=170  Identities=25%  Similarity=0.241  Sum_probs=138.3

Q ss_pred             EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      .+ ||+++|++ .         .+ |+||+|++ |+++|+        |+|  ||  |+++       +    +|+++|+
T Consensus         3 ~~-~l~~~~~~-~---------~~-~vsl~i~~-e~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~~   50 (214)
T cd03297           3 CV-DIEKRLPD-F---------TL-KIDFDLNE-EVTGIF--------GASGAGKSTLLRC-------I----AGLEKPD   50 (214)
T ss_pred             ee-eeeEecCC-e---------ee-CceEEEcc-eeEEEE--------CCCCCCHHHHHHH-------H----hCCCCCC
Confidence            44 89999963 2         34 99999999 999999        999  99  9999       8    9999999


Q ss_pred             Cceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        158 GGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       158 ~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|+|...               .++.++|+||++.++. .|+++|+.++....   ......+++.++++.+++.+..++
T Consensus        51 ~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~  127 (214)
T cd03297          51 GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNR  127 (214)
T ss_pred             CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhc
Confidence            9987421               1346999999998875 69999998653110   001123467788999998765554


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +         +.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++    .++|+|++||+++.+.
T Consensus       128 ~---------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  196 (214)
T cd03297         128 Y---------PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE  196 (214)
T ss_pred             C---------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence            3         679999999999999999999999999999999999999999887764    2789999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-33  Score=249.48  Aligned_cols=182  Identities=22%  Similarity=0.231  Sum_probs=141.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc-
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP-  155 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~-  155 (298)
                      -+++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+.+ 
T Consensus         6 ~~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------i----~G~~~~   57 (251)
T PRK14244          6 ASVKNLNLWYGS-KQ--------ILFDINLDIYKREVTAFI--------GPSGCGKSTFLRC-------F----NRMNDF   57 (251)
T ss_pred             EEeeeEEEEECC-ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhccc
Confidence            368999999953 33        899999999999999999        999  99  9999       8    88875 


Q ss_pred             ----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCch
Q psy11400        156 ----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~  217 (298)
                          |++|+|...             .++.++|+||++.++..|+.+|+.++....... .....++.+.++++.+++.+
T Consensus        58 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  137 (251)
T PRK14244         58 VPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE  137 (251)
T ss_pred             CCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence                468987521             245799999999888789999998642110000 00011345677889988864


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      ....     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+.
T Consensus       138 ~~~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~  212 (251)
T PRK14244        138 ELGD-----RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAK  212 (251)
T ss_pred             hhhh-----HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence            2110     01123678999999999999999999999999999999999999999888765  3799999999998765

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=251.54  Aligned_cols=185  Identities=21%  Similarity=0.230  Sum_probs=143.9

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ..+++++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+
T Consensus        23 ~~~l~~~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----aGl   74 (272)
T PRK14236         23 QTALEVRNLNLFYGD-KQ--------ALFDISMRIPKNRVTAFI--------GPSGCGKSTLLRC-------F----NRM   74 (272)
T ss_pred             CcEEEEEEEEEEECC-ee--------EeeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhc
Confidence            457999999999953 33        899999999999999999        999  99  9999       8    898


Q ss_pred             ccc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WPL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      ++|     ++|+|...             .++.++|+||++.++..|++||+.+..............+.+.++++.+++
T Consensus        75 ~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l  154 (272)
T PRK14236         75 NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAAL  154 (272)
T ss_pred             CCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC
Confidence            873     78987421             245799999999888789999998642111000000112456777888887


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      .+.+..     .....+.+||||||||++|||||+.+|+++||||||++||+.++..+.+++++  .+.|+|++||+++.
T Consensus       155 ~~~~~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~  229 (272)
T PRK14236        155 WDEVKD-----RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ  229 (272)
T ss_pred             ChhHHH-----HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence            532111     01124679999999999999999999999999999999999999999888765  26899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       230 ~~  231 (272)
T PRK14236        230 AA  231 (272)
T ss_pred             HH
Confidence            54

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-33  Score=250.91  Aligned_cols=183  Identities=19%  Similarity=0.157  Sum_probs=142.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||+++|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         7 ~l~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLlk~-------l----~Gl~~   58 (259)
T PRK14260          7 AIKVKDLSFYYNT-SK--------AIEGISMDIYRNKVTAII--------GPSGCGKSTFIKT-------L----NRISE   58 (259)
T ss_pred             eEEEEEEEEEECC-eE--------eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhcC
Confidence            5899999999953 33        899999999999999999        999  99  9999       8    88887


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |     ++|+|...             .+..++|+||++.++..|++||+.++............++.+.++++.+++.+
T Consensus        59 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  138 (259)
T PRK14260         59 LEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQ  138 (259)
T ss_pred             cccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc
Confidence            4     47886521             13469999999988889999999764211000000011234667788888753


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+.
T Consensus       139 ~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~  213 (259)
T PRK14260        139 EVKD-----KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQAT  213 (259)
T ss_pred             hhhh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            2211     11124679999999999999999999999999999999999999999988765  2689999999998765

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=7e-32  Score=247.93  Aligned_cols=179  Identities=18%  Similarity=0.235  Sum_probs=144.8

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ...|+++|+++.   +..        +++|+||+|++|++++|+        |+|  ||  |+++       |    +|+
T Consensus        37 ~~~l~i~nls~~---~~~--------vL~~vs~~i~~Ge~~~li--------G~NGsGKSTLl~~-------I----~Gl   86 (282)
T cd03291          37 DNNLFFSNLCLV---GAP--------VLKNINLKIEKGEMLAIT--------GSTGSGKTSLLML-------I----LGE   86 (282)
T ss_pred             CCeEEEEEEEEe---ccc--------ceeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            456999999985   233        899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-c
Q psy11400        154 WPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-W  231 (298)
Q Consensus       154 ~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~  231 (298)
                      ++|++|+|....  .|+|+||+++++..|++||+.++..        ....++.++++.+++.+.++. +.++++..+ .
T Consensus        87 ~~p~~G~I~i~g--~i~yv~q~~~l~~~tv~enl~~~~~--------~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~  156 (282)
T cd03291          87 LEPSEGKIKHSG--RISFSSQFSWIMPGTIKENIIFGVS--------YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG  156 (282)
T ss_pred             CCCCCcEEEECC--EEEEEeCcccccccCHHHHhhcccc--------cCHHHHHHHHHHhCCHHHHHhccccccceecCC
Confidence            999999997543  6999999999888899999987531        112234556666777665544 344444333 5


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~  296 (298)
                      +.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+ ++  .+.|+|++||+++.+..
T Consensus       157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~  224 (282)
T cd03291         157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKK  224 (282)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHh
Confidence            6799999999999999999999999999999999999998887643 32  37899999999987653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=9.8e-33  Score=272.25  Aligned_cols=180  Identities=19%  Similarity=0.199  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|.+ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         4 ~i~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~G~~~   55 (501)
T PRK10762          4 LLQLKGIDKAFPG-VK--------ALSGAALNVYPGRVMALV--------GENGAGKSTMMKV-------L----TGIYT   55 (501)
T ss_pred             eEEEeeeEEEeCC-eE--------EeeeeeEEEcCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhh---hhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDM---IQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|...            .++.++|+||++.++. .|++||+.++......   .......+++.++++.+++.+..
T Consensus        56 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  135 (501)
T PRK10762         56 RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS  135 (501)
T ss_pred             CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc
Confidence            999998532            1356999999987764 6999999876421100   00001124577889999987655


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      +++         +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++   .+.|+|+|||+++.+..
T Consensus       136 ~~~---------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~  206 (501)
T PRK10762        136 DKL---------VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE  206 (501)
T ss_pred             cCc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            443         679999999999999999999999999999999999999999877654   48899999999987653

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.2e-32  Score=246.40  Aligned_cols=176  Identities=23%  Similarity=0.306  Sum_probs=144.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      |+++|+++.|+.  .        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.+|
T Consensus         1 l~~~~l~~~~~~--~--------~l~~is~~i~~Ge~~~i~--------G~nG~GKStLl~~-------l----~G~~~p   51 (235)
T cd03299           1 LKVENLSKDWKE--F--------KLKNVSLEVERGDYFVIL--------GPTGSGKSVLLET-------I----AGFIKP   51 (235)
T ss_pred             CeeEeEEEEeCC--c--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCcCC
Confidence            468899999952  3        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|++...         .++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.++.++.    
T Consensus        52 ~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~----  126 (235)
T cd03299          52 DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRK----  126 (235)
T ss_pred             CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcC----
Confidence            99987532         2457999999998774 799999986431110 00011234567889999997766553    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                           +.+||||||||++||||++.+|++++|||||++||+.+.+.+.+.+++    .++|+|++||++..+.
T Consensus       127 -----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~  194 (235)
T cd03299         127 -----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAW  194 (235)
T ss_pred             -----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence                 678999999999999999999999999999999999999999887764    2899999999998754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=247.97  Aligned_cols=184  Identities=20%  Similarity=0.189  Sum_probs=140.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++||+++|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.
T Consensus         4 ~~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~   55 (252)
T PRK14255          4 KIITSSDVHLFYGK-FE--------ALKGIDLDFNQNEITALI--------GPSGCGKSTYLRT-------L----NRMN   55 (252)
T ss_pred             ceEEEEeEEEEECC-ee--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence            36899999999963 33        899999999999999999        999  99  9999       8    8876


Q ss_pred             c--c---CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 P--L---FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~--~---~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +  |   ++|+|...             .++.++|+||++.++..|+++|+.++............++++.++++.+++.
T Consensus        56 ~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  135 (252)
T PRK14255         56 DLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW  135 (252)
T ss_pred             ccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc
Confidence            4  4   47886421             1357999999998877899999986421100000001123455667777664


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~  294 (298)
                      ..+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++.  +.|+|+|||+++.+
T Consensus       136 ~~i~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~  210 (252)
T PRK14255        136 DEVKD-----HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA  210 (252)
T ss_pred             cchhh-----HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence            21110     111246799999999999999999999999999999999999999998887653  68999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       211 ~  211 (252)
T PRK14255        211 S  211 (252)
T ss_pred             H
Confidence            4

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.4e-32  Score=250.83  Aligned_cols=180  Identities=22%  Similarity=0.246  Sum_probs=142.0

Q ss_pred             cEEEeeeeEecCC--------CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccc
Q psy11400         80 LRGRLGITLGLRS--------GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLG  147 (298)
Q Consensus        80 ~i~~~~v~~~~~~--------~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~  147 (298)
                      +|+++||++.|+.        +..        +++|+||+|++|++++|+        |+|  ||  |+++       + 
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l-   58 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQT--------VLNNVSLSLKSGETVALL--------GRSGCGKSTLARL-------L-   58 (268)
T ss_pred             eEEEeceEEEecCCccccccCcee--------eEeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H-
Confidence            4889999999973        223        999999999999999999        999  99  9999       8 


Q ss_pred             cccccccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400        148 TLRDQLWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYL  210 (298)
Q Consensus       148 ~~~~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l  210 (298)
                         +|+++|++|+|...              .++.++|+||++.  ++ ..|+.+|+.++...............+.+++
T Consensus        59 ---~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l  135 (268)
T PRK10419         59 ---VGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEML  135 (268)
T ss_pred             ---hCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence               99999999997521              1357999999983  43 4699999865321000000111234577888


Q ss_pred             HHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEE
Q psy11400        211 QKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLF  285 (298)
Q Consensus       211 ~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiI  285 (298)
                      +.+++. ...++         .+..||||||||++|||||+.+|++|||||||++||+.++..+.+.+++    .+.|+|
T Consensus       136 ~~~gl~~~~~~~---------~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii  206 (268)
T PRK10419        136 RAVDLDDSVLDK---------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL  206 (268)
T ss_pred             HHcCCChhHhhC---------CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence            888886 34444         3678999999999999999999999999999999999999888887654    378999


Q ss_pred             EEecCcchhh
Q psy11400        286 TVSHRKSLWT  295 (298)
Q Consensus       286 iitH~l~~~~  295 (298)
                      ++||+++.+.
T Consensus       207 ivsH~~~~i~  216 (268)
T PRK10419        207 FITHDLRLVE  216 (268)
T ss_pred             EEECCHHHHH
Confidence            9999998765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1e-32  Score=258.71  Aligned_cols=186  Identities=19%  Similarity=0.238  Sum_probs=142.1

Q ss_pred             CcEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         79 NLRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      ..++++|+++.|+.+  ...       +++|+||+|++||+++|+        |+|  ||  |+++       +    .|
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~-------~l~~vsl~i~~Ge~~~iv--------G~sGsGKSTL~~~-------l----~G   64 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVT-------AVNDLNFSLRAGETLGIV--------GESGSGKSQTAFA-------L----MG   64 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEE-------EEeeeEEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----Hc
Confidence            468999999999632  222       899999999999999999        999  99  9999       8    89


Q ss_pred             ccccC---Cceeecc---------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400        153 LWPLF---GGTVTKP---------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ  211 (298)
Q Consensus       153 l~~~~---~G~i~~~---------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~  211 (298)
                      +++|.   +|+|...               .++.|+||||+|.  ++ ..|+.+|+..+.............+++.++++
T Consensus        65 l~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~  144 (330)
T PRK09473         65 LLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD  144 (330)
T ss_pred             CCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            98885   8987421               1247999999983  43 46888888653211000000111245677888


Q ss_pred             HcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       212 ~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      .+++.+..+      ....++.+|||||+||++|||||+.+|++||+||||++||+.++..+.+++++    .+.|+|+|
T Consensus       145 ~vgL~~~~~------~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i  218 (330)
T PRK09473        145 AVKMPEARK------RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI  218 (330)
T ss_pred             HcCCCChHH------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            888854211      12235789999999999999999999999999999999999999988887654    38999999


Q ss_pred             ecCcchhhh
Q psy11400        288 SHRKSLWTH  296 (298)
Q Consensus       288 tH~l~~~~~  296 (298)
                      ||+++.+..
T Consensus       219 THdl~~~~~  227 (330)
T PRK09473        219 THDLGVVAG  227 (330)
T ss_pred             ECCHHHHHH
Confidence            999998753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-32  Score=249.18  Aligned_cols=182  Identities=21%  Similarity=0.207  Sum_probs=141.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||+++|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus        10 ~l~i~~v~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   61 (264)
T PRK14243         10 VLRTENLNVYYGS-FL--------AVKNVWLDIPKNQITAFI--------GPSGCGKSTILRC-------F----NRLND   61 (264)
T ss_pred             EEEEeeeEEEECC-EE--------EeecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhhc
Confidence            6899999999953 33        899999999999999999        999  99  9999       7    88765


Q ss_pred             -----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 -----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 -----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                           |++|+|...             .+++++|+||++.++..|+.+|+.++......  .....+++.++++.+++.+
T Consensus        62 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~  139 (264)
T PRK14243         62 LIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY--KGDMDELVERSLRQAALWD  139 (264)
T ss_pred             ccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCc--chHHHHHHHHHHHHhCchh
Confidence                 378887421             14569999999988778999999875421100  0111344566777777743


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++.  +.|||++||+++.+.
T Consensus       140 ~l~~-----~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~  214 (264)
T PRK14243        140 EVKD-----KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA  214 (264)
T ss_pred             hHHH-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            2211     011246799999999999999999999999999999999999999999887652  689999999998765


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       215 ~  215 (264)
T PRK14243        215 R  215 (264)
T ss_pred             H
Confidence            3

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.3e-32  Score=270.21  Aligned_cols=174  Identities=17%  Similarity=0.223  Sum_probs=146.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus        11 ~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~li--------G~NGsGKSTLl~~-------l----~Gl~~   62 (510)
T PRK15439         11 LLCARSISKQYSG-VE--------VLKGIDFTLHAGEVHALL--------GGNGAGKSTLMKI-------I----AGIVP   62 (510)
T ss_pred             eEEEEeEEEEeCC-ce--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6999999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|+|....            +..++|+||++.++. .|+.||+.++...     .....+++.++++.+++.+..+++
T Consensus        63 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~  137 (510)
T PRK15439         63 PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-----RQASMQKMKQLLAALGCQLDLDSS  137 (510)
T ss_pred             CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-----chHHHHHHHHHHHHcCCCccccCC
Confidence            9999985321            246999999998765 5999999886421     111235678889999997655543


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               +.+|||||||||+|||||+.+|++|||||||++||+.....+.+++++   .|+|||++||+++.+.
T Consensus       138 ---------~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~  204 (510)
T PRK15439        138 ---------AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIR  204 (510)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                     679999999999999999999999999999999999999999888764   4899999999998764

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-32  Score=259.45  Aligned_cols=169  Identities=24%  Similarity=0.300  Sum_probs=139.4

Q ss_pred             eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400         85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT  160 (298)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~  160 (298)
                      |+++.|++  .        .+ |+||+|++|++++|+        |||  ||  |+++       +    +|+++|++|+
T Consensus         4 ~l~~~~~~--~--------~~-~isl~i~~Gei~~l~--------G~nGsGKSTLl~~-------i----aGl~~p~~G~   53 (354)
T TIGR02142         4 RFSKRLGD--F--------SL-DADFTLPGQGVTAIF--------GRSGSGKTTLIRL-------I----AGLTRPDEGE   53 (354)
T ss_pred             EEEEEECC--E--------EE-EEEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceE
Confidence            78888852  2        35 999999999999999        999  99  9999       8    9999999999


Q ss_pred             eec---------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        161 VTK---------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       161 i~~---------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |..               ..++.++|+||++.+|. .|++||+.++....   ......+++.++++.+++.++.+++  
T Consensus        54 I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--  128 (354)
T TIGR02142        54 IVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRL--  128 (354)
T ss_pred             EEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCC--
Confidence            742               12456999999998875 59999998764211   0111234578889999998766653  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                             +.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+++    .++|+|++||+++.+.
T Consensus       129 -------~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~  196 (354)
T TIGR02142       129 -------PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVL  196 (354)
T ss_pred             -------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence                   679999999999999999999999999999999999999988887764    3799999999998764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-32  Score=247.34  Aligned_cols=183  Identities=20%  Similarity=0.224  Sum_probs=141.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+++
T Consensus         6 ~i~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   57 (253)
T PRK14261          6 ILSTKNLNLWYGE-KH--------ALYDITISIPKNRVTALI--------GPSGCGKSTLLRC-------F----NRMND   57 (253)
T ss_pred             eEEEeeeEEEECC-ee--------eeeeeEEEECCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence            6899999999963 33        899999999999999999        999  99  9999       7    88764


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      +     ++|+|...             .++.++|+||++.++..|++||+.+.............++.+.++++.+++.+
T Consensus        58 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  137 (253)
T PRK14261         58 LIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD  137 (253)
T ss_pred             CCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch
Confidence            2     47876421             13569999999988878999999875321100000111345667788887743


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+++++  .++|+|++||+++.+.
T Consensus       138 ~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~  212 (253)
T PRK14261        138 EVKD-----RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAA  212 (253)
T ss_pred             hhHH-----HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHH
Confidence            2211     01124679999999999999999999999999999999999999999888765  2689999999998764

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=251.22  Aligned_cols=184  Identities=21%  Similarity=0.238  Sum_probs=142.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..+.++||++.|+. ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    .|++
T Consensus        20 ~~l~i~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl~   71 (276)
T PRK14271         20 PAMAAVNLTLGFAG-KT--------VLDQVSMGFPARAVTSLM--------GPTGSGKTTFLRT-------L----NRMN   71 (276)
T ss_pred             cEEEEeeEEEEECC-EE--------EeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hccC
Confidence            46899999999963 34        899999999999999999        999  99  9999       8    8988


Q ss_pred             cc-----CCceeecc------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        155 PL-----FGGTVTKP------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       155 ~~-----~~G~i~~~------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      +|     ++|+|...            .++.++|+||++.+|..|+++|+.++...............+.++++.+++..
T Consensus        72 ~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  151 (276)
T PRK14271         72 DKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD  151 (276)
T ss_pred             CcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc
Confidence            75     68987531            14579999999988889999999865311000000001123456778888754


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      ....     .....+.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++.  ++|||++||+++.+.
T Consensus       152 ~~~~-----~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~  226 (276)
T PRK14271        152 AVKD-----RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA  226 (276)
T ss_pred             hhhh-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3210     011246799999999999999999999999999999999999999998887753  689999999998754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-32  Score=271.72  Aligned_cols=179  Identities=17%  Similarity=0.215  Sum_probs=145.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         5 ~l~~~nl~~~~~~-~~--------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (506)
T PRK13549          5 LLEMKNITKTFGG-VK--------ALDNVSLKVRAGEIVSLC--------GENGAGKSTLMKV-------L----SGVYP   56 (506)
T ss_pred             eEEEeeeEEEeCC-eE--------eecceeEEEeCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6899999999953 33        899999999999999999        999  99  9999       8    99998


Q ss_pred             c--CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch--hhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        156 L--FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE--DMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       156 ~--~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      |  ++|+|...            .++.++||||++.++. .|++||+.++....  .........+++.++++.+++.+.
T Consensus        57 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  136 (506)
T PRK13549         57 HGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN  136 (506)
T ss_pred             CCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC
Confidence            6  79997531            1356999999997765 69999998764211  000000112457788999998765


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      .+++         +.+||||||||++|||||+.+|++|||||||++||+.....+.+++++   .|+|+|+|||+++.+.
T Consensus       137 ~~~~---------~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~  207 (506)
T PRK13549        137 PATP---------VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVK  207 (506)
T ss_pred             cccc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence            5443         679999999999999999999999999999999999999998887754   4789999999998765

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=248.60  Aligned_cols=186  Identities=19%  Similarity=0.234  Sum_probs=143.7

Q ss_pred             cCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         77 RNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        77 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      ....|+++|+++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|
T Consensus        13 ~~~~l~~~~l~~~~~~-~~--------vl~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G   64 (265)
T PRK14252         13 TQQKSEVNKLNFYYGG-YQ--------ALKNINMMVHEKQVTALI--------GPSGCGKSTFLRC-------F----NR   64 (265)
T ss_pred             CCceEEEEEEEEEECC-ee--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence            3467999999999963 33        899999999999999999        999  99  9999       8    88


Q ss_pred             cccc-----CCceeecc---------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400        153 LWPL-----FGGTVTKP---------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK  212 (298)
Q Consensus       153 l~~~-----~~G~i~~~---------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~  212 (298)
                      +.+|     ++|+|...               .++.++|+||++.++..|++||+.++............++++.++++.
T Consensus        65 l~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~  144 (265)
T PRK14252         65 MHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRN  144 (265)
T ss_pred             ccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHH
Confidence            8764     68887431               145699999999888889999998653110000001123456777777


Q ss_pred             cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecC
Q psy11400        213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHR  290 (298)
Q Consensus       213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~  290 (298)
                      +++...+.     +.....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++  .+.|+|+|||+
T Consensus       145 ~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~  219 (265)
T PRK14252        145 AALWDEVK-----DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN  219 (265)
T ss_pred             cCCchhhh-----HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence            77642111     011123679999999999999999999999999999999999999999888775  26899999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      ++.+.
T Consensus       220 ~~~~~  224 (265)
T PRK14252        220 MQQAA  224 (265)
T ss_pred             HHHHH
Confidence            98764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=2.2e-32  Score=246.96  Aligned_cols=179  Identities=22%  Similarity=0.248  Sum_probs=140.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   54 (253)
T TIGR02323         3 LLQVSGLSKSYGG-GK--------GCRDVSFDLYPGEVLGIV--------GESGSGKSTLLGC-------L----AGRLA   54 (253)
T ss_pred             eEEEeeeEEEeCC-ce--------EeecceEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC--------------------CCcEEEEcCcCC--C-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400        156 LFGGTVTKPP--------------------RGKLFYVPQRPY--M-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK  212 (298)
Q Consensus       156 ~~~G~i~~~~--------------------r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~  212 (298)
                      |++|+|....                    ++.++|++|++.  + +..|+.+|+.+..............+.+.++++.
T Consensus        55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  134 (253)
T TIGR02323        55 PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEE  134 (253)
T ss_pred             CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            9999875321                    135999999985  2 2358888875321000000001123567788899


Q ss_pred             cCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       213 ~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      +++. ...++         .+..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++    .+.|+|+|
T Consensus       135 l~l~~~~~~~---------~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~v  205 (253)
T TIGR02323       135 VEIDPTRIDD---------LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV  205 (253)
T ss_pred             cCCChhhhhc---------CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            8886 34444         3679999999999999999999999999999999999999998887654    37999999


Q ss_pred             ecCcchhh
Q psy11400        288 SHRKSLWT  295 (298)
Q Consensus       288 tH~l~~~~  295 (298)
                      ||+++.+.
T Consensus       206 sH~~~~~~  213 (253)
T TIGR02323       206 THDLGVAR  213 (253)
T ss_pred             eCCHHHHH
Confidence            99998765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-32  Score=256.82  Aligned_cols=185  Identities=15%  Similarity=0.147  Sum_probs=141.3

Q ss_pred             cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .++++|++++|+.+  ..       .+++|+||+|++||+++|+        |+|  ||  |+++       +    .|+
T Consensus         3 ~L~v~~l~~~y~~~~~~~-------~~l~~vsl~i~~Ge~~~iv--------G~sGsGKSTLl~~-------i----~Gl   56 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWV-------KAVDRVSMTLTEGEIRGLV--------GESGSGKSLIAKA-------I----CGV   56 (330)
T ss_pred             eEEEeeeEEEEeCCCCCE-------EEEeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----Hcc
Confidence            58999999999632  22       2899999999999999999        999  99  9998       7    787


Q ss_pred             cc----cCCceeecc---------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcch---hh-hhc-CCCHHHH
Q psy11400        154 WP----LFGGTVTKP---------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKE---DM-IQK-GITDADL  206 (298)
Q Consensus       154 ~~----~~~G~i~~~---------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~---~~-~~~-~~~~~~i  206 (298)
                      .+    +++|+|...               .++.|+||||+|.  +. ..|+.+|+..+....   .. ... ....+++
T Consensus        57 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~  136 (330)
T PRK15093         57 TKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRA  136 (330)
T ss_pred             CCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence            75    578887421               1246999999996  33 368999986421100   00 000 0113467


Q ss_pred             HHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCc
Q psy11400        207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGI  282 (298)
Q Consensus       207 ~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~  282 (298)
                      .++++.++|.+..+.      ....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++    .|.
T Consensus       137 ~~~L~~~gL~~~~~~------~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~  210 (330)
T PRK15093        137 IELLHRVGIKDHKDA------MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT  210 (330)
T ss_pred             HHHHHHCCCCChHHH------HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence            889999999642211      1124789999999999999999999999999999999999999999888765    389


Q ss_pred             EEEEEecCcchhhh
Q psy11400        283 TLFTVSHRKSLWTH  296 (298)
Q Consensus       283 TiIiitH~l~~~~~  296 (298)
                      |+|+|||+++.+..
T Consensus       211 tii~itHdl~~v~~  224 (330)
T PRK15093        211 TILLISHDLQMLSQ  224 (330)
T ss_pred             EEEEEECCHHHHHH
Confidence            99999999998753

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-32  Score=270.31  Aligned_cols=179  Identities=18%  Similarity=0.175  Sum_probs=145.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    .|+++
T Consensus         4 ~l~~~~l~~~~~~-~~--------il~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   55 (501)
T PRK11288          4 YLSFDGIGKTFPG-VK--------ALDDISFDCRAGQVHALM--------GENGAGKSTLLKI-------L----SGNYQ   55 (501)
T ss_pred             eEEEeeeEEEECC-EE--------EEeeeeEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch--hhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE--DMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...            .+++|+|+||++.++. .|+.+|+.++....  .........+++.++++.+++.+..+
T Consensus        56 p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  135 (501)
T PRK11288         56 PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD  135 (501)
T ss_pred             CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC
Confidence            999998531            1457999999997765 59999998753211  00000011346778899998865443


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+++++   .|+|+|+|||+++.+.
T Consensus       136 ~---------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~  204 (501)
T PRK11288        136 T---------PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIF  204 (501)
T ss_pred             C---------chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            3         3679999999999999999999999999999999999999999887764   4899999999998764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-32  Score=249.32  Aligned_cols=179  Identities=18%  Similarity=0.165  Sum_probs=143.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++++|.+ ..        +|+|+||+|++|++++|+        |+|  ||  |+++       |    +|+++
T Consensus         1 ml~~~nl~~~~~~-~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----aG~~~   52 (272)
T PRK13547          1 MLTADHLHVARRH-RA--------ILRDLSLRIEPGRVTALL--------GRNGAGKSTLLKA-------L----AGDLT   52 (272)
T ss_pred             CeEEEEEEEEECC-Ee--------EEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999953 33        899999999999999999        999  99  9999       8    99998


Q ss_pred             cC--------Cceeecc-----------CCCcEEEEcCcCC-CCCCCHHHHHccCCcchhh---hhcCCCHHHHHHHHHH
Q psy11400        156 LF--------GGTVTKP-----------PRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDM---IQKGITDADLTEYLQK  212 (298)
Q Consensus       156 ~~--------~G~i~~~-----------~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~~~---~~~~~~~~~i~~~l~~  212 (298)
                      |+        +|+|...           .++.++|+||++. ++..|++||+.++......   .......+.+.++++.
T Consensus        53 p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  132 (272)
T PRK13547         53 GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL  132 (272)
T ss_pred             CcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH
Confidence            87        8987531           1345899999986 4678999999875321100   0000123456788889


Q ss_pred             cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHh----
Q psy11400        213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCRE----  279 (298)
Q Consensus       213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~----  279 (298)
                      +++.+..+++         +.+||||||||++|||||+         .+|++|||||||++||+.+.+.+.+++++    
T Consensus       133 ~~l~~~~~~~---------~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  203 (272)
T PRK13547        133 AGATALVGRD---------VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD  203 (272)
T ss_pred             cCcHhhhcCC---------cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence            9987665543         6799999999999999999         59999999999999999999999888764    


Q ss_pred             cCcEEEEEecCcchhh
Q psy11400        280 VGITLFTVSHRKSLWT  295 (298)
Q Consensus       280 ~~~TiIiitH~l~~~~  295 (298)
                      .++|+|+|||+++.+.
T Consensus       204 ~~~tviiisH~~~~~~  219 (272)
T PRK13547        204 WNLGVLAIVHDPNLAA  219 (272)
T ss_pred             cCCEEEEEECCHHHHH
Confidence            2799999999998764

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=3.1e-32  Score=245.67  Aligned_cols=184  Identities=18%  Similarity=0.152  Sum_probs=142.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||++.|++ ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~v~~~~~~-~~--------~l~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   54 (250)
T PRK14266          3 RIEVENLNTYFDD-AH--------ILKNVNLDIPKNSVTALI--------GPSGCGKSTFIRT-------L----NRMND   54 (250)
T ss_pred             EEEEEeEEEEeCC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hhhhc
Confidence            3789999999963 33        899999999999999999        999  99  9999       7    77653


Q ss_pred             -----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 -----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 -----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                           |++|+|...             .+++++|+||++.+|..|+.||+.++.............+.+.++++.+++.+
T Consensus        55 ~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  134 (250)
T PRK14266         55 LIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD  134 (250)
T ss_pred             cCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCch
Confidence                 378887421             14579999999988888999999875311100000012345677888888854


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+...     ....+.+||||||||++|||||+.+|++++|||||++||+.+...+.+.+++  .+.|+|++||+++.+.
T Consensus       135 ~l~~~-----~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~  209 (250)
T PRK14266        135 EVKDK-----LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQAT  209 (250)
T ss_pred             hHHHH-----HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHH
Confidence            32210     1123679999999999999999999999999999999999999999888765  3789999999998664


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       210 ~  210 (250)
T PRK14266        210 R  210 (250)
T ss_pred             h
Confidence            3

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.9e-32  Score=247.64  Aligned_cols=183  Identities=17%  Similarity=0.139  Sum_probs=142.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|+. ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         7 ~l~~~nl~~~~~~-~~--------il~~is~~i~~Ge~~~I~--------G~nGsGKSTLl~~-------l----~Gl~~   58 (261)
T PRK14258          7 AIKVNNLSFYYDT-QK--------ILEGVSMEIYQSKVTAII--------GPSGCGKSTFLKC-------L----NRMNE   58 (261)
T ss_pred             eEEEeeEEEEeCC-ee--------EeeceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccC
Confidence            6899999999953 33        899999999999999999        999  99  9999       8    89988


Q ss_pred             cC-----Cceeec-------------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 LF-----GGTVTK-------------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~~-----~G~i~~-------------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |+     +|++..             ..++.++|+||++.++..|+.||+.+..............+.+.++++.+++.+
T Consensus        59 ~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  138 (261)
T PRK14258         59 LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD  138 (261)
T ss_pred             CCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc
Confidence            75     676531             114569999999988779999999764210000000011245677888888754


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL  293 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~  293 (298)
                      .+..     .....+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++    .+.|+|++||+++.
T Consensus       139 ~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~  213 (261)
T PRK14258        139 EIKH-----KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ  213 (261)
T ss_pred             hhhh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            3211     01123679999999999999999999999999999999999999998887764    38999999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       214 i~  215 (261)
T PRK14258        214 VS  215 (261)
T ss_pred             HH
Confidence            64

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.8e-32  Score=269.51  Aligned_cols=179  Identities=17%  Similarity=0.096  Sum_probs=145.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +++|+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus         5 ~l~~~~l~~~~~~-~~--------il~~vs~~i~~Ge~~~li--------G~nGsGKSTLl~~-------i----~Gl~~   56 (510)
T PRK09700          5 YISMAGIGKSFGP-VH--------ALKSVNLTVYPGEIHALL--------GENGAGKSTLMKV-------L----SGIHE   56 (510)
T ss_pred             eEEEeeeEEEcCC-eE--------EeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCcC
Confidence            6899999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-hhh-----cCCCHHHHHHHHHHcCCc
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-MIQ-----KGITDADLTEYLQKVQLG  216 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-~~~-----~~~~~~~i~~~l~~~~l~  216 (298)
                      |++|+|...            .+++++||||++.++. .|++||+.++..... ...     .....+++.++++.+++.
T Consensus        57 p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  136 (510)
T PRK09700         57 PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK  136 (510)
T ss_pred             CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC
Confidence            999998531            1246999999997765 599999987532100 000     001124577889999987


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      +..+++         +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++   .|+|||+|||+++.
T Consensus       137 ~~~~~~---------~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~  207 (510)
T PRK09700        137 VDLDEK---------VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE  207 (510)
T ss_pred             CCcccc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            655443         679999999999999999999999999999999999999999887764   48999999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       208 ~~  209 (510)
T PRK09700        208 IR  209 (510)
T ss_pred             HH
Confidence            65

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.98  E-value=4.3e-32  Score=270.84  Aligned_cols=180  Identities=19%  Similarity=0.244  Sum_probs=145.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         6 ~l~i~~l~~~y~~~~~--------il~~vs~~i~~Ge~~~ii--------G~NGsGKSTLlk~-------i----~G~~~   58 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQ--------ILKDISLSFFPGAKIGVL--------GLNGAGKSTLLRI-------M----AGVDK   58 (556)
T ss_pred             EEEEeeEEEEeCCCCe--------eeeCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6899999999962344        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcch-h------h----hhcC-----------------------
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-D------M----IQKG-----------------------  200 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-~------~----~~~~-----------------------  200 (298)
                      |++|+|......+|+||||+|.+++ .|+.||+.++.... .      .    ....                       
T Consensus        59 p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (556)
T PRK11819         59 EFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA  138 (556)
T ss_pred             CCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence            9999997655668999999998765 59999998753100 0      0    0000                       


Q ss_pred             -CCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        201 -ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       201 -~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                       ...+++.++++.+++.. .++         .+.+|||||||||+|||||+.+|++|||||||++||+.....+.+.+++
T Consensus       139 ~~~~~~~~~~l~~~gl~~-~~~---------~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        139 WDLDSQLEIAMDALRCPP-WDA---------KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             cchHHHHHHHHHhCCCCc-ccC---------chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence             00234555666666632 222         4679999999999999999999999999999999999999999999998


Q ss_pred             cCcEEEEEecCcchhhh
Q psy11400        280 VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       280 ~~~TiIiitH~l~~~~~  296 (298)
                      .+.|+|+|||+++.+..
T Consensus       209 ~~~tviiisHd~~~~~~  225 (556)
T PRK11819        209 YPGTVVAVTHDRYFLDN  225 (556)
T ss_pred             CCCeEEEEeCCHHHHHh
Confidence            77899999999987653

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.9e-32  Score=247.30  Aligned_cols=185  Identities=22%  Similarity=0.260  Sum_probs=143.4

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +.++.++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+
T Consensus         8 ~~~i~~~~~~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----aG~   59 (257)
T PRK14246          8 EDVFNISRLYLYIND-KA--------ILKDITIKIPNNSIFGIM--------GPSGSGKSTLLKV-------L----NRL   59 (257)
T ss_pred             hhheeeeeEEEecCC-ce--------eEeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            347999999999953 33        899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeec-----------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WPLFGGTVTK-----------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~~~~G~i~~-----------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      ++|++|+|..                 ..++.++|+||++.++. .|+.+|+.++...............+.++++.+++
T Consensus        60 ~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l  139 (257)
T PRK14246         60 IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL  139 (257)
T ss_pred             CCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence            9998865421                 01457999999998876 59999998753110000000012346778888888


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      ...+.     +.....+..||+|||||++|||||+.+|+++||||||++||+.+++.+.+.+.+  .++|+|++||+++.
T Consensus       140 ~~~~~-----~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~  214 (257)
T PRK14246        140 WKEVY-----DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQ  214 (257)
T ss_pred             Cccch-----hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHH
Confidence            54220     111224678999999999999999999999999999999999999999988765  36899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       215 ~~  216 (257)
T PRK14246        215 VA  216 (257)
T ss_pred             HH
Confidence            63

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.98  E-value=1.5e-32  Score=261.35  Aligned_cols=163  Identities=21%  Similarity=0.208  Sum_probs=135.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC--------------
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP--------------  165 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~--------------  165 (298)
                      +++|+||+|++||+++|+        |+|  ||  |+++       |    .|+++|++|+|....              
T Consensus        39 ~l~~vsf~i~~Gei~~I~--------G~nGsGKSTLlr~-------L----~Gl~~p~~G~I~idG~~~~~~i~~~~~~~   99 (382)
T TIGR03415        39 GVANASLDIEEGEICVLM--------GLSGSGKSSLLRA-------V----NGLNPVSRGSVLVKDGDGSIDVANCDAAT   99 (382)
T ss_pred             EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCCCCCcEEEECCEecccccccCCHHH
Confidence            899999999999999999        999  99  9999       8    999999999875321              


Q ss_pred             -----CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400        166 -----RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE  239 (298)
Q Consensus       166 -----r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq  239 (298)
                           +++|+||||++.+++ .|++||+.++..... .......+++.++++.+++.++.+++         +.+|||||
T Consensus       100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g-~~~~~~~~~a~e~le~vgL~~~~~~~---------~~~LSgGq  169 (382)
T TIGR03415       100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQG-MPEAERRKRVDEQLELVGLAQWADKK---------PGELSGGM  169 (382)
T ss_pred             HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHH
Confidence                 147999999998876 799999987632110 00111234678899999998766553         67899999


Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      |||++|||||+.+|++||||||||+||+.+...+++.+.+    .++|+|+|||+++.+.
T Consensus       170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~  229 (382)
T TIGR03415       170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEAL  229 (382)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            9999999999999999999999999999999998887654    3899999999999764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.8e-32  Score=246.06  Aligned_cols=183  Identities=17%  Similarity=0.163  Sum_probs=138.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~G~~~   55 (252)
T PRK14272          4 LLSAQDVNIYYGD-KQ--------AVKNVNLDVQRGTVNALI--------GPSGCGKTTFLRA-------I----NRMHD   55 (252)
T ss_pred             EEEEeeeEEEECC-EE--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            5889999999963 33        899999999999999999        999  99  9999       8    99887


Q ss_pred             cC-----Cceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        156 LF-----GGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       156 ~~-----~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      |.     +|+|...             .++.++|+||++.++. .|+.||+.++.............+.+.+.++.+++.
T Consensus        56 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  135 (252)
T PRK14272         56 LTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW  135 (252)
T ss_pred             CCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcc
Confidence            64     7887421             1346999999998876 599999976421100000000112344555666653


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchh
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLW  294 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~  294 (298)
                      ..+..     ....++.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++  .++|+|++||+++.+
T Consensus       136 ~~l~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~  210 (252)
T PRK14272        136 DEVKD-----RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQA  210 (252)
T ss_pred             hhhhh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence            21110     01124679999999999999999999999999999999999999999988775  369999999999876


Q ss_pred             h
Q psy11400        295 T  295 (298)
Q Consensus       295 ~  295 (298)
                      .
T Consensus       211 ~  211 (252)
T PRK14272        211 A  211 (252)
T ss_pred             H
Confidence            5

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.98  E-value=2.7e-32  Score=275.52  Aligned_cols=190  Identities=21%  Similarity=0.256  Sum_probs=146.0

Q ss_pred             CcEEEeeeeEecCCCCCCCCC--CcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDS--RWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~--~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      .+++++||++.|+.+...+..  ....+++|+||+|++||+++|+        |+|  ||  |+++       +    .|
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lv--------G~nGsGKSTLlk~-------i----~G  372 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLV--------GESGSGKSTTGRA-------L----LR  372 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hc
Confidence            468999999999621000000  0012899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        153 LWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       153 l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      +.+|++|+|...              .+++|+||||+++  ++ ..|+.+|+.++.............+++.++++.+++
T Consensus       373 l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL  452 (623)
T PRK10261        373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL  452 (623)
T ss_pred             CCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence            999999998531              1457999999984  54 469999997642110000000113467788999999


Q ss_pred             c-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        216 G-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       216 ~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      . +..++         ++.+|||||||||+|||||+.+|++|||||||++||+.+...+++++++    .|.|+|+|||+
T Consensus       453 ~~~~~~~---------~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd  523 (623)
T PRK10261        453 LPEHAWR---------YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD  523 (623)
T ss_pred             CHHHhhC---------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5 45554         3689999999999999999999999999999999999999999888753    48999999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      ++.+..
T Consensus       524 l~~v~~  529 (623)
T PRK10261        524 MAVVER  529 (623)
T ss_pred             HHHHHH
Confidence            998754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=5.5e-32  Score=247.68  Aligned_cols=183  Identities=20%  Similarity=0.273  Sum_probs=142.7

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ..+++++|+++.|++ ..        +|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+
T Consensus        18 ~~~l~~~nl~~~~~~-~~--------~l~~vs~~i~~Ge~~~Ii--------G~nGsGKSTLl~~-------l----~Gl   69 (274)
T PRK14265         18 HSVFEVEGVKVFYGG-FL--------ALVDVHLKIPAKKIIAFI--------GPSGCGKSTLLRC-------F----NRM   69 (274)
T ss_pred             CceEEEeeEEEEeCC-eE--------EEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            347999999999963 33        899999999999999999        999  99  9999       7    888


Q ss_pred             ccc-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WPL-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      +++     ++|+|...             .++.|+|+||++.++..|+.+|+.++......  ....++.+.++++.+++
T Consensus        70 ~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~l~~~~l  147 (274)
T PRK14265         70 NDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY--KGNLDELVEDSLRRAAI  147 (274)
T ss_pred             cccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCc--hHHHHHHHHHHHHHccc
Confidence            753     58886421             14579999999988878999999875311100  00113445667777777


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL  293 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~  293 (298)
                      ...+..     .....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++.  +.|||++||+++.
T Consensus       148 ~~~l~~-----~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~  222 (274)
T PRK14265        148 WEEVKD-----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ  222 (274)
T ss_pred             chhhHH-----HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            432211     111246799999999999999999999999999999999999999999988753  6899999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       223 ~~  224 (274)
T PRK14265        223 AS  224 (274)
T ss_pred             HH
Confidence            65

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.98  E-value=6.3e-32  Score=244.48  Aligned_cols=175  Identities=21%  Similarity=0.165  Sum_probs=140.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|  +..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+.+
T Consensus         4 ~l~~~~l~~~~--~~~--------il~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   54 (254)
T PRK10418          4 QIELRNIALQA--AQP--------LVHGVSLTLQRGRVLALV--------GGSGSGKSLTCAA-------A----LGILP   54 (254)
T ss_pred             EEEEeCeEEEe--ccc--------eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            58999999999  334        899999999999999999        999  99  9999       8    99998


Q ss_pred             c----CCceeecc---------CCCcEEEEcCcCC-CC--CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-
Q psy11400        156 L----FGGTVTKP---------PRGKLFYVPQRPY-MT--LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-  218 (298)
Q Consensus       156 ~----~~G~i~~~---------~r~~i~~v~Q~~~-l~--~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-  218 (298)
                      |    ++|+|...         .++.++|+||++. .+  ..|+.+|+.+.....   .....++++.++++.+++.+. 
T Consensus        55 ~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~  131 (254)
T PRK10418         55 AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPADDATLTAALEAVGLENAA  131 (254)
T ss_pred             CCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCChHHHHHHHHHHHcCCCChh
Confidence            8    89987532         1346999999984 23  258888875421100   011234567889999998752 


Q ss_pred             --hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400        219 --LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS  292 (298)
Q Consensus       219 --~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~  292 (298)
                        +++         .+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++    .|.|+|++||+++
T Consensus       132 ~~~~~---------~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~  202 (254)
T PRK10418        132 RVLKL---------YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG  202 (254)
T ss_pred             hhhhc---------CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence              333         3679999999999999999999999999999999999999988887754    3799999999998


Q ss_pred             hhh
Q psy11400        293 LWT  295 (298)
Q Consensus       293 ~~~  295 (298)
                      .+.
T Consensus       203 ~~~  205 (254)
T PRK10418        203 VVA  205 (254)
T ss_pred             HHH
Confidence            764

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=1.1e-32  Score=249.77  Aligned_cols=163  Identities=23%  Similarity=0.233  Sum_probs=136.1

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------------
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------------  164 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------------  164 (298)
                      -++|+||+|++||+..|+        |-|  ||  |+|+       +    .++.+|+.|+|...               
T Consensus        43 Gv~~~sl~v~~GeIfViM--------GLSGSGKSTLvR~-------~----NrLiept~G~ilv~g~di~~~~~~~Lr~~  103 (386)
T COG4175          43 GVNDASLDVEEGEIFVIM--------GLSGSGKSTLVRL-------L----NRLIEPTRGEILVDGKDIAKLSAAELREL  103 (386)
T ss_pred             eeccceeeecCCeEEEEE--------ecCCCCHHHHHHH-------H----hccCCCCCceEEECCcchhcCCHHHHHHH
Confidence            478999999999999999        999  99  9999       8    99999999998531               


Q ss_pred             CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400        165 PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV  243 (298)
Q Consensus       165 ~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl  243 (298)
                      .++++++|||+.-| ++.||.||..|+....... +....+++.++++.+||..+.++         ++++|||||||||
T Consensus       104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~-~~er~~~a~~~l~~VgL~~~~~~---------yp~eLSGGMqQRV  173 (386)
T COG4175         104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-KAEREERALEALELVGLEGYADK---------YPNELSGGMQQRV  173 (386)
T ss_pred             HhhhhhhhhhhhccccchhHhhhhhcceeecCCC-HHHHHHHHHHHHHHcCchhhhhc---------CcccccchHHHHH
Confidence            35789999999876 4679999999997543211 12234667889999999888766         3789999999999


Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      .|||||+.+|+||++|||+|||||-.+..+    .++-++.++|||+||||++.+-
T Consensus       174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAl  229 (386)
T COG4175         174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEAL  229 (386)
T ss_pred             HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence            999999999999999999999999655554    4455567999999999998653

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=7.7e-32  Score=250.32  Aligned_cols=185  Identities=19%  Similarity=0.207  Sum_probs=144.4

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +.++.++||++.|++ ..        +|+++||+|++|++++|+        |+|  ||  |+++       +    +|+
T Consensus        43 ~~~l~i~nl~~~~~~-~~--------iL~~is~~i~~Ge~~~Iv--------G~nGsGKSTLl~~-------L----~Gl   94 (305)
T PRK14264         43 DAKLSVEDLDVYYGD-DH--------ALKGVSMDIPEKSVTALI--------GPSGCGKSTFLRC-------L----NRM   94 (305)
T ss_pred             CceEEEEEEEEEeCC-ee--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcc
Confidence            347999999999964 33        899999999999999999        999  99  9999       8    888


Q ss_pred             cc-----cCCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhh---------hhc---CCCH
Q psy11400        154 WP-----LFGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDM---------IQK---GITD  203 (298)
Q Consensus       154 ~~-----~~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~---------~~~---~~~~  203 (298)
                      ++     |++|+|...             .++.++|+||++.++..|++||+.++......         ...   ...+
T Consensus        95 ~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (305)
T PRK14264         95 NDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED  174 (305)
T ss_pred             ccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHH
Confidence            75     578987521             13579999999988888999999875321000         000   0113


Q ss_pred             HHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--C
Q psy11400        204 ADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G  281 (298)
Q Consensus       204 ~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~  281 (298)
                      +.+.++++.+++.+.+..     .....+.+||||||||++|||||+++|++|||||||++||+.+...+.+++++.  +
T Consensus       175 ~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~  249 (305)
T PRK14264        175 ELVERSLRQAALWDEVND-----RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE  249 (305)
T ss_pred             HHHHHHHHHcCCchhhhH-----HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence            456778888887432211     011246799999999999999999999999999999999999999999888753  6


Q ss_pred             cEEEEEecCcchhh
Q psy11400        282 ITLFTVSHRKSLWT  295 (298)
Q Consensus       282 ~TiIiitH~l~~~~  295 (298)
                      .|+|++||+++.+.
T Consensus       250 ~tiiivtH~~~~i~  263 (305)
T PRK14264        250 YTVVVVTHNMQQAA  263 (305)
T ss_pred             CEEEEEEcCHHHHH
Confidence            89999999998764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=7.7e-33  Score=230.85  Aligned_cols=162  Identities=29%  Similarity=0.409  Sum_probs=137.1

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~  168 (298)
                      +|+++||++.+||.++|+        |||  ||  |+|.       +    +.+.+|++|.+...           .|++
T Consensus        18 il~~isl~v~~Ge~iait--------GPSG~GKStllk~-------v----a~Lisp~~G~l~f~Ge~vs~~~pea~Rq~   78 (223)
T COG4619          18 ILNNISLSVRAGEFIAIT--------GPSGCGKSTLLKI-------V----ASLISPTSGTLLFEGEDVSTLKPEAYRQQ   78 (223)
T ss_pred             eecceeeeecCCceEEEe--------CCCCccHHHHHHH-------H----HhccCCCCceEEEcCccccccChHHHHHH
Confidence            999999999999999999        999  99  8898       7    88999999998531           3778


Q ss_pred             EEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400        169 LFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMAR  247 (298)
Q Consensus       169 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR  247 (298)
                      |+|+.|.|.+|.+||.||+.||....   ....+.+...+.++.+++.+ ++.+         ...+||||||||++|+|
T Consensus        79 VsY~~Q~paLfg~tVeDNlifP~~~r---~rr~dr~aa~~llar~~l~~~~L~k---------~it~lSGGE~QriAliR  146 (223)
T COG4619          79 VSYCAQTPALFGDTVEDNLIFPWQIR---NRRPDRAAALDLLARFALPDSILTK---------NITELSGGEKQRIALIR  146 (223)
T ss_pred             HHHHHcCccccccchhhccccchHHh---ccCCChHHHHHHHHHcCCchhhhcc---------hhhhccchHHHHHHHHH
Confidence            99999999999999999999997432   12345677888999999975 3443         36799999999999999


Q ss_pred             HHhcCCCEEEEeccccCCCHHHHHHHHH----HHHhcCcEEEEEecCcch-hhh
Q psy11400        248 LFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSHRKSL-WTH  296 (298)
Q Consensus       248 aL~~~P~iliLDEPTs~LD~~~~~~i~~----~l~~~~~TiIiitH~l~~-~~~  296 (298)
                      -|.--|+||+||||||+||+.+.+.+-+    +.++.+..++.|||+.+. ++|
T Consensus       147 ~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh  200 (223)
T COG4619         147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH  200 (223)
T ss_pred             HhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh
Confidence            9999999999999999999977665544    455668999999999986 443

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=7.7e-32  Score=267.59  Aligned_cols=179  Identities=21%  Similarity=0.212  Sum_probs=146.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         1 ml~i~~ls~~~~~-~~--------il~~vsl~i~~Ge~~~li--------G~NGsGKSTLl~~-------l----~Gl~~   52 (530)
T PRK15064          1 MLSTANITMQFGA-KP--------LFENISVKFGGGNRYGLI--------GANGCGKSTFMKI-------L----GGDLE   52 (530)
T ss_pred             CEEEEEEEEEeCC-cE--------eEeCCEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            3789999999953 34        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcch-h------hhh--c----------------------CCCH
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE-D------MIQ--K----------------------GITD  203 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-~------~~~--~----------------------~~~~  203 (298)
                      |++|+|....+..|+|+||++.++. .|++||+.++.... .      ...  .                      ....
T Consensus        53 p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (530)
T PRK15064         53 PSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAE  132 (530)
T ss_pred             CCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHH
Confidence            9999998765667999999987664 59999998653100 0      000  0                      0112


Q ss_pred             HHHHHHHHHcCCchhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCc
Q psy11400        204 ADLTEYLQKVQLGYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI  282 (298)
Q Consensus       204 ~~i~~~l~~~~l~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~  282 (298)
                      .++.++++.+++.+.. ++         .+.+||||||||++|||||+.+|++|||||||++||+.....+.+++++.+.
T Consensus       133 ~~~~~~l~~~gl~~~~~~~---------~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~  203 (530)
T PRK15064        133 ARAGELLLGVGIPEEQHYG---------LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS  203 (530)
T ss_pred             HHHHHHHHhCCCChhHhcC---------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence            4567788888886533 22         2579999999999999999999999999999999999999999999988799


Q ss_pred             EEEEEecCcchhh
Q psy11400        283 TLFTVSHRKSLWT  295 (298)
Q Consensus       283 TiIiitH~l~~~~  295 (298)
                      |||+|||+++.+.
T Consensus       204 tiiivsHd~~~~~  216 (530)
T PRK15064        204 TMIIISHDRHFLN  216 (530)
T ss_pred             eEEEEeCCHHHHH
Confidence            9999999998765

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.98  E-value=4.3e-32  Score=274.02  Aligned_cols=183  Identities=19%  Similarity=0.260  Sum_probs=144.4

Q ss_pred             CCcEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         78 NNLRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      +.+++++|+++.|+.+  ..+       +++|+||+|++||+++|+        |+|  ||  |+++       +    .
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~-------~l~~is~~v~~Ge~~~lv--------G~nGsGKSTLl~~-------l----~   63 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIA-------AVRNLSFSLQRGETLAIV--------GESGSGKSVTALA-------L----M   63 (623)
T ss_pred             CceEEEeceEEEecCCCCcee-------EEEeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----H
Confidence            3479999999999632  222       999999999999999999        999  99  9999       8    9


Q ss_pred             cccccCCceeecc-------------------------CCCcEEEEcCcC--CCCC-CCHHHHHccCCcchhhhhcCCCH
Q psy11400        152 QLWPLFGGTVTKP-------------------------PRGKLFYVPQRP--YMTL-GTLRDQVIYPHTKEDMIQKGITD  203 (298)
Q Consensus       152 ~l~~~~~G~i~~~-------------------------~r~~i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~  203 (298)
                      |+++|++|+|...                         .+++|+||+|+|  .++. .|+.||+.++.............
T Consensus        64 Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~  143 (623)
T PRK10261         64 RLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM  143 (623)
T ss_pred             cCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999986421                         124699999998  4544 69999998753110000001123


Q ss_pred             HHHHHHHHHcCCch---hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-
Q psy11400        204 ADLTEYLQKVQLGY---ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-  279 (298)
Q Consensus       204 ~~i~~~l~~~~l~~---~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-  279 (298)
                      +++.++++.+++.+   ..++         .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ 
T Consensus       144 ~~~~~~l~~~gL~~~~~~~~~---------~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l  214 (623)
T PRK10261        144 VEAKRMLDQVRIPEAQTILSR---------YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL  214 (623)
T ss_pred             HHHHHHHHHCCCCChhhHHhC---------CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence            56778899999853   2333         3789999999999999999999999999999999999999988887764 


Q ss_pred             ---cCcEEEEEecCcchhh
Q psy11400        280 ---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       280 ---~~~TiIiitH~l~~~~  295 (298)
                         .|+|||+|||+++.+.
T Consensus       215 ~~~~g~tvi~itHdl~~~~  233 (623)
T PRK10261        215 QKEMSMGVIFITHDMGVVA  233 (623)
T ss_pred             HHhcCCEEEEEcCCHHHHH
Confidence               3899999999998764

>PTZ00243 ABC transporter; Provisional

Probab=99.97  E-value=3.8e-31  Score=288.52  Aligned_cols=166  Identities=25%  Similarity=0.288  Sum_probs=140.6

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCC
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYM  178 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l  178 (298)
                      ++|+|+||+|++|++++|+        |||  ||  |+++       +    .|+++|++|+|..  +++|+|+||+|++
T Consensus       674 ~iL~~isl~i~~G~~~~Ii--------G~nGsGKSTLL~~-------i----~G~~~~~~G~i~~--~~~i~yv~Q~~~l  732 (1560)
T PTZ00243        674 VLLRDVSVSVPRGKLTVVL--------GATGSGKSTLLQS-------L----LSQFEISEGRVWA--ERSIAYVPQQAWI  732 (1560)
T ss_pred             eeEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCCCCcEEEE--CCeEEEEeCCCcc
Confidence            3899999999999999999        999  99  9999       8    9999999999874  4679999999999


Q ss_pred             CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400        179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFA  256 (298)
Q Consensus       179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~il  256 (298)
                      +++|++|||.++..        .+.++..++++.+++.+.++. ++|+++..+ .+.+|||||||||+|||||+.+|+++
T Consensus       733 ~~~Tv~enI~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~il  804 (1560)
T PTZ00243        733 MNATVRGNILFFDE--------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY  804 (1560)
T ss_pred             CCCcHHHHHHcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999998641        223456667777777766655 677877654 78899999999999999999999999


Q ss_pred             EEeccccCCCHHHHHHHHHHH-H-h-cCcEEEEEecCcchhhhc
Q psy11400        257 ILDECTSAVSVDVEGSMYEYC-R-E-VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       257 iLDEPTs~LD~~~~~~i~~~l-~-~-~~~TiIiitH~l~~~~~~  297 (298)
                      |||||||+||+.+.+.+.+.+ . . .|+|+|++||+++.+.+.
T Consensus       805 lLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a  848 (1560)
T PTZ00243        805 LLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA  848 (1560)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence            999999999999888777632 2 1 489999999999887643

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=5.3e-32  Score=268.15  Aligned_cols=181  Identities=19%  Similarity=0.183  Sum_probs=144.8

Q ss_pred             CcEEEeeeeEecCC---CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         79 NLRGRLGITLGLRS---GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        79 ~~i~~~~v~~~~~~---~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      .+++++|+++.|++   +..+       +++|+||+|++|++++|+        |||  ||  |+++       +    .
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~-------il~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~  331 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVK-------AVDNVSLEVKEGEIFGIV--------GTSGAGKTTLSKI-------I----A  331 (520)
T ss_pred             ceEEEeccEEEeccCCCCCce-------EEeeEEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence            36999999999953   2222       899999999999999999        999  99  9999       8    9


Q ss_pred             cccccCCceeecc------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400        152 QLWPLFGGTVTKP------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQK  212 (298)
Q Consensus       152 ~l~~~~~G~i~~~------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~  212 (298)
                      |+.+|++|+|...                  .+++|+|+||++.++. .|+.||+.++....  .......+++.++++.
T Consensus       332 Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~l~~  409 (520)
T TIGR03269       332 GVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE--LPDELARMKAVITLKM  409 (520)
T ss_pred             CCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Confidence            9999999998641                  1245999999987665 69999997642100  0001113457788999


Q ss_pred             cCCch-----hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcE
Q psy11400        213 VQLGY-----ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGIT  283 (298)
Q Consensus       213 ~~l~~-----~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~T  283 (298)
                      +++..     +.++         ++.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++    .|.|
T Consensus       410 ~~l~~~~~~~~~~~---------~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  480 (520)
T TIGR03269       410 VGFDEEKAEEILDK---------YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQT  480 (520)
T ss_pred             CCCCCccchhhhhC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcE
Confidence            99863     3333         3689999999999999999999999999999999999999999888753    4899


Q ss_pred             EEEEecCcchhhh
Q psy11400        284 LFTVSHRKSLWTH  296 (298)
Q Consensus       284 iIiitH~l~~~~~  296 (298)
                      ||+|||+++.+..
T Consensus       481 vi~vsHd~~~~~~  493 (520)
T TIGR03269       481 FIIVSHDMDFVLD  493 (520)
T ss_pred             EEEEeCCHHHHHH
Confidence            9999999987653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.97  E-value=1.4e-31  Score=228.39  Aligned_cols=143  Identities=29%  Similarity=0.460  Sum_probs=123.9

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++....       +++|+||++++|++++|+        |||  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~~~~~-------~l~~i~~~i~~G~~~~l~--------G~nGsGKstLl~~-------i----~G~~~~   54 (171)
T cd03228           1 IEFKNVSFSYPGRPKP-------VLKDVSLTIKPGEKVAIV--------GPSGSGKSTLLKL-------L----LRLYDP   54 (171)
T ss_pred             CEEEEEEEEcCCCCcc-------cccceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCCCC
Confidence            4689999999653222       899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|++...           .++.++|+||++.++..|+.||+                                      
T Consensus        55 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l--------------------------------------   96 (171)
T cd03228          55 TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI--------------------------------------   96 (171)
T ss_pred             CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh--------------------------------------
Confidence            99987531           13569999999977777777775                                      


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                               ||+|||||++||||++.+|+++||||||++||+.+...+.+++++.  ++|+|++||+++.+..
T Consensus        97 ---------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  160 (171)
T cd03228          97 ---------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD  160 (171)
T ss_pred             ---------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence                     8999999999999999999999999999999999999999888653  6899999999987643

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.3e-32  Score=265.87  Aligned_cols=177  Identities=15%  Similarity=0.146  Sum_probs=141.5

Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      ++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+.+|++
T Consensus         1 ~~nl~~~~~~-~~--------il~~vs~~i~~Ge~~~li--------G~nGsGKSTLl~~-------l----~Gl~~p~~   52 (491)
T PRK10982          1 MSNISKSFPG-VK--------ALDNVNLKVRPHSIHALM--------GENGAGKSTLLKC-------L----FGIYQKDS   52 (491)
T ss_pred             CCceEEEeCC-EE--------eeeeeeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCCCCc
Confidence            4689999953 33        899999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeecc------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hh-hhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        159 GTVTKP------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DM-IQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       159 G~i~~~------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~-~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      |+|...            .++.++|+||++.++ ..|++||+.++.... .. .......+++.++++.+++....++  
T Consensus        53 G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--  130 (491)
T PRK10982         53 GSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRA--  130 (491)
T ss_pred             eEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccC--
Confidence            998531            135699999999765 469999998753210 00 0000112456778888888655444  


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                             .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++   .|+|+|+|||+++.+..
T Consensus       131 -------~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~  199 (491)
T PRK10982        131 -------KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ  199 (491)
T ss_pred             -------chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence                   3679999999999999999999999999999999999999999887765   48999999999987653

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.97  E-value=1.2e-31  Score=229.15  Aligned_cols=141  Identities=26%  Similarity=0.327  Sum_probs=123.3

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+. ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~~~~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~   52 (173)
T cd03230           1 IEVRNLSKRYGK-KT--------ALDDISLTVEKGEIYGLL--------GPNGAGKTTLIKI-------I----LGLLKP   52 (173)
T ss_pred             CEEEEEEEEECC-ee--------eeeeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc----------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        157 FGGTVTKP----------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       157 ~~G~i~~~----------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      ++|++...          .++.++|+||++.++.. |+.||+.                                     
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------   95 (173)
T cd03230          53 DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-------------------------------------   95 (173)
T ss_pred             CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------
Confidence            99987531          24579999999977654 8888762                                     


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               ||||||||++|||||+.+|++++|||||++||+.+...+.+.+++   .|.|+|++||+.+.+.
T Consensus        96 ---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~  159 (173)
T cd03230          96 ---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE  159 (173)
T ss_pred             ---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence                     899999999999999999999999999999999999999888765   3789999999998765

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.1e-31  Score=264.53  Aligned_cols=175  Identities=22%  Similarity=0.229  Sum_probs=148.7

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    .|+.
T Consensus       318 ~~l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------i----~G~~  369 (530)
T PRK15064        318 NALEVENLTKGFDN-GP--------LFKNLNLLLEAGERLAII--------GENGVGKTTLLRT-------L----VGEL  369 (530)
T ss_pred             ceEEEEeeEEeeCC-ce--------eecCcEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            47999999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcCCcccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKGWDTVAD  230 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~  230 (298)
                      +|++|+|....+.+++|+||++.  ++ ..|+.+|+.+...      .....+++.++++.+++. +..+++        
T Consensus       370 ~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~--------  435 (530)
T PRK15064        370 EPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ------EGDDEQAVRGTLGRLLFSQDDIKKS--------  435 (530)
T ss_pred             CCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc------CCccHHHHHHHHHHcCCChhHhcCc--------
Confidence            99999998766778999999974  43 3699999864210      112345678899999984 444443        


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                       +.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++.+.|||+|||+++.+..
T Consensus       436 -~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~  500 (530)
T PRK15064        436 -VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSS  500 (530)
T ss_pred             -ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence             68999999999999999999999999999999999999999999998877899999999987653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=1e-31  Score=264.95  Aligned_cols=179  Identities=17%  Similarity=0.194  Sum_probs=142.8

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+.+|
T Consensus         2 l~i~~l~~~~~~-~~--------il~~isl~i~~Ge~~~li--------G~nGsGKSTLl~~-------i----~G~~~~   53 (500)
T TIGR02633         2 LEMKGIVKTFGG-VK--------ALDGIDLEVRPGECVGLC--------GENGAGKSTLMKI-------L----SGVYPH   53 (500)
T ss_pred             EEEEeEEEEeCC-eE--------eecceEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            789999999953 33        899999999999999999        999  99  9999       8    898886


Q ss_pred             --CCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh---hhhcCCCHHHHHHHHHHcCCchh
Q psy11400        157 --FGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED---MIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       157 --~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                        ++|+|...            .++.++||||++.++. .|+.||+.++.....   ........+++.++++.+++.+.
T Consensus        54 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  133 (500)
T TIGR02633        54 GTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD  133 (500)
T ss_pred             CCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC
Confidence              79997532            1356999999997664 699999987642110   00000112456788888888643


Q ss_pred             h-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        219 L-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      . ++         .+.+|||||||||+|||||+.+|+++||||||++||+.+...+.+.+++   .|+|||+|||+++.+
T Consensus       134 ~~~~---------~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~  204 (500)
T TIGR02633       134 NVTR---------PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV  204 (500)
T ss_pred             cccC---------chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence            2 22         2678999999999999999999999999999999999999999888664   489999999999876


Q ss_pred             hh
Q psy11400        295 TH  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       205 ~~  206 (500)
T TIGR02633       205 KA  206 (500)
T ss_pred             HH
Confidence            53

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=1.7e-31  Score=266.35  Aligned_cols=189  Identities=20%  Similarity=0.234  Sum_probs=145.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+++..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+.+
T Consensus         4 ~i~~~nls~~~~~~~~--------il~~is~~i~~Ge~~~li--------G~NGsGKSTLl~~-------i----~G~~~   56 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKE--------ILKDISLSFFPGAKIGVL--------GLNGAGKSTLLRI-------M----AGVDK   56 (552)
T ss_pred             EEEEeeEEEecCCCCe--------eecCceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6899999999963334        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcchh-----h------hhcCCC--------HHHHHHHHHHcCC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED-----M------IQKGIT--------DADLTEYLQKVQL  215 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-----~------~~~~~~--------~~~i~~~l~~~~l  215 (298)
                      |++|+|....+..|+||||+|.++. .|+.||+.++.....     .      ......        ..++.+.++.++.
T Consensus        57 p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (552)
T TIGR03719        57 EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA  136 (552)
T ss_pred             CCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence            9999997665668999999998764 699999987532100     0      000001        1223444444443


Q ss_pred             chh-------hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400        216 GYI-------LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS  288 (298)
Q Consensus       216 ~~~-------~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit  288 (298)
                      .+.       ++. -|++.....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++.+.|+|+||
T Consensus       137 ~~~~~~~~~~l~~-~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiis  215 (552)
T TIGR03719       137 WDLDRKLEIAMDA-LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVT  215 (552)
T ss_pred             chhHHHHHHHHhh-CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEe
Confidence            211       111 122212235689999999999999999999999999999999999999999999988778999999


Q ss_pred             cCcchhhh
Q psy11400        289 HRKSLWTH  296 (298)
Q Consensus       289 H~l~~~~~  296 (298)
                      |+++.+..
T Consensus       216 Hd~~~~~~  223 (552)
T TIGR03719       216 HDRYFLDN  223 (552)
T ss_pred             CCHHHHHh
Confidence            99987653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=6.1e-32  Score=267.71  Aligned_cols=177  Identities=21%  Similarity=0.182  Sum_probs=141.7

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW--  154 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~--  154 (298)
                      ++++|+++.|++ ..        +++|+||++++|++++|+        |||  ||  |+++       +    +|+.  
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~ii--------G~nGsGKSTLl~~-------l----~Gl~~~   52 (520)
T TIGR03269         1 IEVKNLTKKFDG-KE--------VLKNISFTIEEGEVLGIL--------GRSGAGKSVLMHV-------L----RGMDQY   52 (520)
T ss_pred             CEEEEEEEEECC-eE--------eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhcccC
Confidence            468999999953 33        899999999999999999        999  99  9999       8    8886  


Q ss_pred             ccCCceeecc--------------------------------------------CCCcEEEEcCc-CCCCC-CCHHHHHc
Q psy11400        155 PLFGGTVTKP--------------------------------------------PRGKLFYVPQR-PYMTL-GTLRDQVI  188 (298)
Q Consensus       155 ~~~~G~i~~~--------------------------------------------~r~~i~~v~Q~-~~l~~-~tv~eni~  188 (298)
                      +|++|+|...                                            .++.++|+||+ +.++. .|+++|+.
T Consensus        53 ~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~  132 (520)
T TIGR03269        53 EPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL  132 (520)
T ss_pred             CCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHH
Confidence            6889987532                                            13459999998 45554 69999998


Q ss_pred             cCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHH
Q psy11400        189 YPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD  268 (298)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~  268 (298)
                      ++...... ......+++.++++.+++.++.+++         +.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus       133 ~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~  202 (520)
T TIGR03269       133 EALEEIGY-EGKEAVGRAVDLIEMVQLSHRITHI---------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQ  202 (520)
T ss_pred             HHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhcC---------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHH
Confidence            75311000 0001134678889999997766553         6799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        269 VEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       269 ~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +...+.+++++    .|+|||+|||+++.+.
T Consensus       203 ~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  233 (520)
T TIGR03269       203 TAKLVHNALEEAVKASGISMVLTSHWPEVIE  233 (520)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            99998776653    4899999999998765

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.2e-32  Score=232.18  Aligned_cols=180  Identities=21%  Similarity=0.206  Sum_probs=146.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++.+++++.+|+.....       +++|+|++|.+||.+.++        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~~sl~y~g~~~~-------~le~vsL~ia~ge~vv~l--------GpSGcGKTTLLnl-------~----AGf~~   56 (259)
T COG4525           3 MLNVSHLSLSYEGKPRS-------ALEDVSLTIASGELVVVL--------GPSGCGKTTLLNL-------I----AGFVT   56 (259)
T ss_pred             eeehhheEEecCCcchh-------hhhccceeecCCCEEEEE--------cCCCccHHHHHHH-------H----hcCcC
Confidence            35678899999754332       899999999999999999        999  99  9998       8    99999


Q ss_pred             cCCceeeccCC------CcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400        156 LFGGTVTKPPR------GKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV  228 (298)
Q Consensus       156 ~~~G~i~~~~r------~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~  228 (298)
                      |..|+|....|      ..=|.|||++.+ +..++.||+.|+...... .+....+.+.+.+..+|+.++-++       
T Consensus        57 P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi-~k~~R~~~a~q~l~~VgL~~~~~~-------  128 (259)
T COG4525          57 PSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI-EKAQRREIAHQMLALVGLEGAEHK-------  128 (259)
T ss_pred             cccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhCccccccc-------
Confidence            99999875432      346899999976 467999999998643221 112223556788888999765443       


Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~  295 (298)
                        ++.+||||||||+.|||||..+|++|+||||+++||.-+++.+.+++    ++.|+.+++|||+++.+-
T Consensus       129 --~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl  197 (259)
T COG4525         129 --YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL  197 (259)
T ss_pred             --ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence              36799999999999999999999999999999999999888887765    446999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.97  E-value=7.7e-32  Score=240.56  Aligned_cols=163  Identities=23%  Similarity=0.210  Sum_probs=130.8

Q ss_pred             eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------CCCcEEEEcC
Q psy11400        105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------PRGKLFYVPQ  174 (298)
Q Consensus       105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------~r~~i~~v~Q  174 (298)
                      ++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|++|+|...      .....+|+||
T Consensus         1 l~~is~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q   61 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLI--------GHSGCGKSTLLNL-------I----SGLAQPTSGGVILEGKQITEPGPDRMVVFQ   61 (230)
T ss_pred             CCceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCceEEECCEECCCCChhheEEec
Confidence            47899999999999999        999  99  9999       8    99999999998632      1123689999


Q ss_pred             cCCCCC-CCHHHHHccCCcc-hhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400        175 RPYMTL-GTLRDQVIYPHTK-EDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR  252 (298)
Q Consensus       175 ~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~  252 (298)
                      ++.++. .|+.||+.++... ..........+.+.++++.+++.+..+++         +.+||||||||++|||||+.+
T Consensus        62 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~  132 (230)
T TIGR01184        62 NYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR---------PGQLSGGMKQRVAIARALSIR  132 (230)
T ss_pred             CcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCC---------hhhCCHHHHHHHHHHHHHHcC
Confidence            998776 6999999764210 00000001123567889999987665543         678999999999999999999


Q ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        253 PQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       253 P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      |+++||||||++||+.+...+.+.+++    .++|+|+|||+++.+.
T Consensus       133 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  179 (230)
T TIGR01184       133 PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL  179 (230)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999999999999999999999887754    3789999999998754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=7e-32  Score=246.42  Aligned_cols=186  Identities=21%  Similarity=0.225  Sum_probs=137.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|++..|+...-     ..++++|+||+|++||+++|+        |.|  ||  +.+.       +    .|+.+.
T Consensus         2 L~v~nL~v~f~~~~g-----~v~av~~vs~~i~~GE~lgiV--------GESGsGKS~~~~a-------i----m~llp~   57 (316)
T COG0444           2 LEVKNLSVSFPTDAG-----VVKAVDGVSFELKKGEILGIV--------GESGSGKSVLAKA-------I----MGLLPK   57 (316)
T ss_pred             ceEeeeEEEEecCCc-----cEEEEeceeEEEcCCcEEEEE--------cCCCCCHHHHHHH-------H----HhccCC
Confidence            678999998864320     112999999999999999999        999  99  5555       4    555541


Q ss_pred             -----CCceeec---------------cCCCcEEEEcCcCC--C-CCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHH
Q psy11400        157 -----FGGTVTK---------------PPRGKLFYVPQRPY--M-TLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQK  212 (298)
Q Consensus       157 -----~~G~i~~---------------~~r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~  212 (298)
                           .+|+|..               -+.+.|+++||+|.  | +..||.+++.-........ ......+++.++|+.
T Consensus        58 ~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~  137 (316)
T COG0444          58 PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLEL  137 (316)
T ss_pred             CCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence                 3455431               12457999999995  3 2358888876432111000 011123568889999


Q ss_pred             cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400        213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS  288 (298)
Q Consensus       213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit  288 (298)
                      +++.+-..+      ...++.+|||||+|||.||.||+.+|++||.||||+|||..++.+|.+++++    .|.|+|+||
T Consensus       138 Vgi~~~~~~------~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT  211 (316)
T COG0444         138 VGIPDPERR------LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT  211 (316)
T ss_pred             cCCCCHHHH------HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            999753222      1125899999999999999999999999999999999999999999888764    599999999


Q ss_pred             cCcchhhh
Q psy11400        289 HRKSLWTH  296 (298)
Q Consensus       289 H~l~~~~~  296 (298)
                      ||+.++..
T Consensus       212 HDl~vva~  219 (316)
T COG0444         212 HDLGVVAE  219 (316)
T ss_pred             CCHHHHHH
Confidence            99998764

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.97  E-value=6.8e-32  Score=241.81  Aligned_cols=163  Identities=20%  Similarity=0.206  Sum_probs=130.1

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc----------CCCcE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----------PRGKL  169 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----------~r~~i  169 (298)
                      +|+|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|++|+|...          .++++
T Consensus        36 il~~vs~~i~~Ge~~~i~--------G~NGsGKSTLl~~-------i----~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i   96 (236)
T cd03267          36 ALKGISFTIEKGEIVGFI--------GPNGAGKTTTLKI-------L----SGLLQPTSGEVRVAGLVPWKRRKKFLRRI   96 (236)
T ss_pred             eeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcCCCceEEEECCEEccccchhhcccE
Confidence            999999999999999999        999  99  9999       8    99999999997531          24579


Q ss_pred             EEEc-CcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400        170 FYVP-QRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMAR  247 (298)
Q Consensus       170 ~~v~-Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR  247 (298)
                      +|+| |++.++ ..|++||+.+....... ......+.+.++++.+++.+..++         .+.+||||||||++|||
T Consensus        97 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~la~  166 (236)
T cd03267          97 GVVFGQKTQLWWDLPVIDSFYLLAAIYDL-PPARFKKRLDELSELLDLEELLDT---------PVRQLSLGQRMRAEIAA  166 (236)
T ss_pred             EEEcCCccccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHHHHHHHH
Confidence            9998 556564 57999998754211000 000112346677888888765544         25789999999999999


Q ss_pred             HHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        248 LFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       248 aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ||+.+|+++||||||++||+.+.+.+.+++++    .++|+|++||+++.+.
T Consensus       167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~  218 (236)
T cd03267         167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIE  218 (236)
T ss_pred             HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence            99999999999999999999999999988765    2789999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.97  E-value=2.2e-31  Score=228.59  Aligned_cols=143  Identities=23%  Similarity=0.215  Sum_probs=124.3

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|+. ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 i~~~~l~~~~~~-~~--------~l~~i~~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~~   52 (178)
T cd03229           1 LELKNVSKRYGQ-KT--------VLNDVSLNIEAGEIVALL--------GPSGSGKSTLLRC-------I----AGLEEP   52 (178)
T ss_pred             CEEEEEEEEECC-eE--------EEeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        157 FGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       157 ~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      ++|+|...             .++.++|+||++.++. .|++||+.+.                                
T Consensus        53 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------  100 (178)
T cd03229          53 DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------  100 (178)
T ss_pred             CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------
Confidence            99987421             1357999999998764 5888887541                                


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~  295 (298)
                                  ||||||||++|||||+.+|+++||||||++||+.++..+.+++++   . +.|+|++||+++.+.
T Consensus       101 ------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  165 (178)
T cd03229         101 ------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA  165 (178)
T ss_pred             ------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                        899999999999999999999999999999999999999887764   2 689999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=1.4e-31  Score=265.67  Aligned_cols=181  Identities=23%  Similarity=0.316  Sum_probs=141.8

Q ss_pred             cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +++++|+++.|+++  ...       +++|+||+|++||+++|+        |||  ||  |+++       +    +|+
T Consensus         5 ~l~~~~l~~~~~~~~~~~~-------~l~~isl~i~~Ge~~~ii--------G~nGsGKSTLl~~-------i----~G~   58 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRT-------VVNDVSLQIEAGETLALV--------GESGSGKSVTALS-------I----LRL   58 (529)
T ss_pred             eEEEeceEEEecCCCCcee-------eeeceEEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hcC
Confidence            68999999999642  122       999999999999999999        999  99  9999       8    899


Q ss_pred             ccc-----CCceeecc--------------C-CCcEEEEcCcCC--CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400        154 WPL-----FGGTVTKP--------------P-RGKLFYVPQRPY--MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYL  210 (298)
Q Consensus       154 ~~~-----~~G~i~~~--------------~-r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l  210 (298)
                      ++|     ++|+|...              . +++++|+||++.  ++ ..++.+|+.++.............+++.+++
T Consensus        59 ~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (529)
T PRK15134         59 LPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCL  138 (529)
T ss_pred             CCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            886     68987421              1 246999999985  33 3588998864311000000111235678899


Q ss_pred             HHcCCchh---hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcE
Q psy11400        211 QKVQLGYI---LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGIT  283 (298)
Q Consensus       211 ~~~~l~~~---~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~T  283 (298)
                      +.+++.+.   .++         .+.+|||||||||+|||||+.+|++|||||||++||+.....+.+++++    .++|
T Consensus       139 ~~~gl~~~~~~~~~---------~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  209 (529)
T PRK15134        139 DRVGIRQAAKRLTD---------YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMG  209 (529)
T ss_pred             HHCCCCChHHHHhh---------CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCe
Confidence            99999653   333         3689999999999999999999999999999999999999999888765    3899


Q ss_pred             EEEEecCcchhh
Q psy11400        284 LFTVSHRKSLWT  295 (298)
Q Consensus       284 iIiitH~l~~~~  295 (298)
                      ||+|||+++.+.
T Consensus       210 vi~vtHd~~~~~  221 (529)
T PRK15134        210 LLFITHNLSIVR  221 (529)
T ss_pred             EEEEcCcHHHHH
Confidence            999999998765

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.4e-31  Score=240.87  Aligned_cols=181  Identities=22%  Similarity=0.147  Sum_probs=144.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+.++++++.|.+ ..        +++|+||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         8 ~~~~~~~~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   59 (261)
T PRK14263          8 VMDCKLDKIFYGN-FM--------AVRDSHVPIRKNEITGFI--------GPSGCGKSTVLRS-------L----NRMND   59 (261)
T ss_pred             eEEEEeEEEEeCC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----Hcccc
Confidence            4788999999953 33        899999999999999999        999  99  9999       8    88887


Q ss_pred             c-----CCceeecc-------------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        156 L-----FGGTVTKP-------------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       156 ~-----~~G~i~~~-------------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      |     ++|+|...             .++.++|+||++.++..|+.||+.++..... . .....+.+.++++.+++.+
T Consensus        60 p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~  137 (261)
T PRK14263         60 LVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWD  137 (261)
T ss_pred             cccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCch
Confidence            6     68987421             1356999999999888999999987532110 0 0112346788899988854


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+...     ....+.+|||||+||++|||||+++|+++||||||++||+.++..+.+++++  .+.|+|++||+++.+.
T Consensus       138 ~i~~~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~  212 (261)
T PRK14263        138 EVKDK-----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAI  212 (261)
T ss_pred             hhhhh-----hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence            33210     1124678999999999999999999999999999999999999999998876  3689999999998654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-31  Score=264.75  Aligned_cols=183  Identities=17%  Similarity=0.182  Sum_probs=143.2

Q ss_pred             CcEEEeeeeEecCC-CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         79 NLRGRLGITLGLRS-GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        79 ~~i~~~~v~~~~~~-~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+++++|+++.|+. +..+       +++|+||+|++|++++|+        |+|  ||  |+++       +    .|+
T Consensus       258 ~~l~~~~l~~~~~~~~~~~-------vl~~vsl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------i----~Gl  311 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIK-------RVDDVSFSLRRGEILGIA--------GLVGAGRTELVQC-------L----FGA  311 (506)
T ss_pred             ceEEEecCccccccccccc-------cccceeeEEcCCcEEEEe--------CCCCCCHHHHHHH-------H----hCC
Confidence            36899999999953 1222       899999999999999999        999  99  9999       8    999


Q ss_pred             cc-cCCceeecc------------CCCcEEEEcCcC---CCC-CCCHHHHHccCCcchh-h---hhcCCCHHHHHHHHHH
Q psy11400        154 WP-LFGGTVTKP------------PRGKLFYVPQRP---YMT-LGTLRDQVIYPHTKED-M---IQKGITDADLTEYLQK  212 (298)
Q Consensus       154 ~~-~~~G~i~~~------------~r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~-~---~~~~~~~~~i~~~l~~  212 (298)
                      .+ |++|+|...            .+..++|+||++   .++ ..|+.||+.++..... .   .......+++.++++.
T Consensus       312 ~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  391 (506)
T PRK13549        312 YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR  391 (506)
T ss_pred             CCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHh
Confidence            88 589998631            134599999996   344 4699999987531100 0   0000112457788899


Q ss_pred             cCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEe
Q psy11400        213 VQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVS  288 (298)
Q Consensus       213 ~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiit  288 (298)
                      +++. +..++         .+.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+++++   .|+|||++|
T Consensus       392 ~~l~~~~~~~---------~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s  462 (506)
T PRK13549        392 LKVKTASPEL---------AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS  462 (506)
T ss_pred             cCccCCCccc---------ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence            9885 34444         3679999999999999999999999999999999999999988887653   489999999


Q ss_pred             cCcchhhh
Q psy11400        289 HRKSLWTH  296 (298)
Q Consensus       289 H~l~~~~~  296 (298)
                      |+++.+..
T Consensus       463 Hd~~~~~~  470 (506)
T PRK13549        463 SELPEVLG  470 (506)
T ss_pred             CCHHHHHH
Confidence            99987653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=1.2e-31  Score=266.05  Aligned_cols=182  Identities=19%  Similarity=0.177  Sum_probs=143.1

Q ss_pred             CcEEEeeeeEecCCC---------CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccc
Q psy11400         79 NLRGRLGITLGLRSG---------GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMT  145 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~---------~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~  145 (298)
                      .+++++|+++.|+.+         ...       +|+|+||+|++|++++|+        |||  ||  |+++       
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~-------il~~isl~i~~Ge~~~i~--------G~nGsGKSTLlk~-------  331 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNV-------VVKNISFTLRPGETLGLV--------GESGSGKSTTGLA-------  331 (529)
T ss_pred             CcccccCcEEEeecCccccccccccce-------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------
Confidence            368999999999521         122       899999999999999999        999  99  9999       


Q ss_pred             cccccccccccCCceeecc--------------CCCcEEEEcCcCC--CC-CCCHHHHHccCCcchh-hhhcCCCHHHHH
Q psy11400        146 LGTLRDQLWPLFGGTVTKP--------------PRGKLFYVPQRPY--MT-LGTLRDQVIYPHTKED-MIQKGITDADLT  207 (298)
Q Consensus       146 l~~~~~~l~~~~~G~i~~~--------------~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~~~-~~~~~~~~~~i~  207 (298)
                      +    .|+++ ++|+|...              .+++++|+||++.  ++ ..|+.||+.++..... ........+++.
T Consensus       332 l----~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~  406 (529)
T PRK15134        332 L----LRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI  406 (529)
T ss_pred             H----hCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence            8    88885 88987531              1346999999983  44 4699999987521100 000011234577


Q ss_pred             HHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCc
Q psy11400        208 EYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGI  282 (298)
Q Consensus       208 ~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~  282 (298)
                      ++++.+++. +..+++         +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++    .|+
T Consensus       407 ~~l~~~~l~~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  477 (529)
T PRK15134        407 AVMEEVGLDPETRHRY---------PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQL  477 (529)
T ss_pred             HHHHHcCCCHHHHhcC---------CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCC
Confidence            889999986 345543         679999999999999999999999999999999999999999888764    379


Q ss_pred             EEEEEecCcchhhh
Q psy11400        283 TLFTVSHRKSLWTH  296 (298)
Q Consensus       283 TiIiitH~l~~~~~  296 (298)
                      |||+|||+++.+..
T Consensus       478 tvi~vsHd~~~~~~  491 (529)
T PRK15134        478 AYLFISHDLHVVRA  491 (529)
T ss_pred             EEEEEeCCHHHHHH
Confidence            99999999987753

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.97  E-value=2.9e-31  Score=239.37  Aligned_cols=159  Identities=25%  Similarity=0.228  Sum_probs=130.4

Q ss_pred             ceeeeeEEEe-----CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcC
Q psy11400        104 SFFDYMFGVR-----GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQ  174 (298)
Q Consensus       104 ~l~~isl~i~-----~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q  174 (298)
                      .+.|++|+++     +||+++|+        |+|  ||  |+++       +    +|+.+|++|+|..... .|+|+||
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~--------G~NGsGKSTLlk~-------L----~G~~~p~~G~i~~~g~-~i~~~~q   68 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGIL--------GPNGIGKTTFIKM-------L----AGVLKPDEGDIEIELD-TVSYKPQ   68 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCcCCCCeEEECCc-eEEEecc
Confidence            6788888886     79999999        999  99  9999       8    9999999999976443 7999999


Q ss_pred             cCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC
Q psy11400        175 RPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP  253 (298)
Q Consensus       175 ~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P  253 (298)
                      ++.. +..|+.||+.+....     .........++++.+++.+..+++         +.+||||||||++|||||+.+|
T Consensus        69 ~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~l~l~~~~~~~---------~~~LSgGe~qrv~iaraL~~~p  134 (246)
T cd03237          69 YIKADYEGTVRDLLSSITKD-----FYTHPYFKTEIAKPLQIEQILDRE---------VPELSGGELQRVAIAACLSKDA  134 (246)
T ss_pred             cccCCCCCCHHHHHHHHhhh-----ccccHHHHHHHHHHcCCHHHhhCC---------hhhCCHHHHHHHHHHHHHhcCC
Confidence            9874 578999998653210     011123456788888887665543         6789999999999999999999


Q ss_pred             CEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        254 QFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       254 ~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +++||||||++||+.+...+.+.+++    .++|+|+|||+++.+..
T Consensus       135 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~  181 (246)
T cd03237         135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY  181 (246)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            99999999999999999988887765    37999999999987653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=2e-31  Score=262.18  Aligned_cols=170  Identities=19%  Similarity=0.139  Sum_probs=141.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++|+++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~li--------G~nGsGKSTLl~~-------l----~G~~~   54 (490)
T PRK10938          3 SLQISQGTFRLSD-TK--------TLQLPSLTLNAGDSWAFV--------GANGSGKSALARA-------L----AGELP   54 (490)
T ss_pred             eEEEEeEEEEcCC-ee--------ecccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hccCC
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC-----------CCcEEEEcCcCCC--C-------CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        156 LFGGTVTKPP-----------RGKLFYVPQRPYM--T-------LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      |++|+|....           ++.++|+||++.+  +       ..|+++++.++.         ...+++.++++.+++
T Consensus        55 p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~l  125 (490)
T PRK10938         55 LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---------KDPARCEQLAQQFGI  125 (490)
T ss_pred             CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccch---------hHHHHHHHHHHHcCC
Confidence            9999985311           2359999998743  1       347777765421         124567889999999


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                      .+..+++         +.+||||||||++|||||+.+|+++||||||++||+.....+.+++++   .|+|+|+|||+++
T Consensus       126 ~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~  196 (490)
T PRK10938        126 TALLDRR---------FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD  196 (490)
T ss_pred             HhhhhCC---------cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            7766553         679999999999999999999999999999999999999999888765   3789999999998


Q ss_pred             hhh
Q psy11400        293 LWT  295 (298)
Q Consensus       293 ~~~  295 (298)
                      .+.
T Consensus       197 ~~~  199 (490)
T PRK10938        197 EIP  199 (490)
T ss_pred             HHH
Confidence            764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-31  Score=263.55  Aligned_cols=179  Identities=17%  Similarity=0.177  Sum_probs=142.0

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|   ..        +++|+||+|++|++++|+        |||  ||  |+++       +    +|++
T Consensus       264 ~~l~~~~l~~~~---~~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------i----~Gl~  313 (510)
T PRK09700        264 TVFEVRNVTSRD---RK--------KVRDISFSVCRGEILGFA--------GLVGSGRTELMNC-------L----FGVD  313 (510)
T ss_pred             cEEEEeCccccC---CC--------cccceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            368999999865   22        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccC------------CCcEEEEcCcC---CCC-CCCHHHHHccCCcch--hh------hhcCCCHHHHHHHH
Q psy11400        155 PLFGGTVTKPP------------RGKLFYVPQRP---YMT-LGTLRDQVIYPHTKE--DM------IQKGITDADLTEYL  210 (298)
Q Consensus       155 ~~~~G~i~~~~------------r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~~--~~------~~~~~~~~~i~~~l  210 (298)
                      +|++|+|....            +++++|+||++   .++ ..|++||+.++....  ..      .......+++.+++
T Consensus       314 ~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  393 (510)
T PRK09700        314 KRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR  393 (510)
T ss_pred             cCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHH
Confidence            99999985321            34699999984   344 469999998753210  00      00001123567888


Q ss_pred             HHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400        211 QKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT  286 (298)
Q Consensus       211 ~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi  286 (298)
                      +.+++. +..++         .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++   .|.|||+
T Consensus       394 ~~~~l~~~~~~~---------~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~  464 (510)
T PRK09700        394 ELLALKCHSVNQ---------NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM  464 (510)
T ss_pred             HhcCCCCCCccC---------ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            888885 44444         3679999999999999999999999999999999999999999888764   4899999


Q ss_pred             EecCcchhhh
Q psy11400        287 VSHRKSLWTH  296 (298)
Q Consensus       287 itH~l~~~~~  296 (298)
                      |||+++.+..
T Consensus       465 vsHd~~~~~~  474 (510)
T PRK09700        465 VSSELPEIIT  474 (510)
T ss_pred             EcCCHHHHHh
Confidence            9999987653

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.97  E-value=6.3e-31  Score=237.26  Aligned_cols=179  Identities=18%  Similarity=0.211  Sum_probs=139.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--  153 (298)
                      +++++|+++.|++ ..        +|+|+||+|++||+++|+        |+|  ||  |+++       +    +|+  
T Consensus         7 ~l~~~~l~~~~~~-~~--------~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------i----~Gl~~   58 (252)
T CHL00131          7 ILEIKNLHASVNE-NE--------ILKGLNLSINKGEIHAIM--------GPNGSGKSTLSKV-------I----AGHPA   58 (252)
T ss_pred             eEEEEeEEEEeCC-EE--------eeecceeEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCCc
Confidence            5899999999963 33        899999999999999999        999  99  9999       8    887  


Q ss_pred             cccCCceeecc----------CCC--cEEEEcCcCCCCC-CCHHHHHccCCcchhhh-h-cCCC----HHHHHHHHHHcC
Q psy11400        154 WPLFGGTVTKP----------PRG--KLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-Q-KGIT----DADLTEYLQKVQ  214 (298)
Q Consensus       154 ~~~~~G~i~~~----------~r~--~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~-~~~~----~~~i~~~l~~~~  214 (298)
                      ++|++|+|...          .+.  .++|+||++.++. .|+.+|+.+........ . ....    .+.+.++++.++
T Consensus        59 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  138 (252)
T CHL00131         59 YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG  138 (252)
T ss_pred             CcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence            67899987531          112  4889999998775 48899886532110000 0 0011    234677888888


Q ss_pred             Cc-hhhhhcCCcccccccCC-CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400        215 LG-YILNREKGWDTVADWID-VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH  289 (298)
Q Consensus       215 l~-~~~~~~~g~d~~~~~~~-~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH  289 (298)
                      +. ...+++         +. .||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++   .++|+|++||
T Consensus       139 l~~~~~~~~---------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH  209 (252)
T CHL00131        139 MDPSFLSRN---------VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH  209 (252)
T ss_pred             Cchhhhccc---------cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            86 344432         44 5999999999999999999999999999999999999999888765   3899999999


Q ss_pred             Ccchhh
Q psy11400        290 RKSLWT  295 (298)
Q Consensus       290 ~l~~~~  295 (298)
                      +++.+.
T Consensus       210 ~~~~~~  215 (252)
T CHL00131        210 YQRLLD  215 (252)
T ss_pred             CHHHHH
Confidence            998765

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.97  E-value=3.2e-31  Score=230.76  Aligned_cols=148  Identities=25%  Similarity=0.268  Sum_probs=126.6

Q ss_pred             cEEEeeeeEecCCC----CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         80 LRGRLGITLGLRSG----GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        80 ~i~~~~v~~~~~~~----~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      .++++||++.|+..    ..+       +++|+||++++|++++|+        |||  ||  |+++       +    +
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~-------~l~~~~~~i~~Ge~~~l~--------G~nGsGKStLl~~-------i----~   56 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQ-------LLKNVSGKAKPGELTAIM--------GPSGAGKSTLLNA-------L----A   56 (194)
T ss_pred             EEEEEeeEEEEecCCCccccc-------ceecceEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----h
Confidence            37899999999742    122       999999999999999999        999  99  9999       8    9


Q ss_pred             ccc--ccCCceeecc--------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        152 QLW--PLFGGTVTKP--------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       152 ~l~--~~~~G~i~~~--------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++  +|++|+|...        .++.++|+||++.++. .|++||+.++.             .+              
T Consensus        57 Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-------------~~--------------  109 (194)
T cd03213          57 GRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA-------------KL--------------  109 (194)
T ss_pred             CCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH-------------Hh--------------
Confidence            999  9999998532        3567999999998765 59999986521             00              


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                                  ..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   .++|+|++||+++
T Consensus       110 ------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         110 ------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             ------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence                        05999999999999999999999999999999999999999888765   3789999999986

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=9.6e-32  Score=223.27  Aligned_cols=178  Identities=26%  Similarity=0.281  Sum_probs=142.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++|+.+.|...+         +|.||+|+-+.||.+.+.        |||  ||  |+|.       +    .-+.-
T Consensus         2 sirv~~in~~yg~~q---------~lfdi~l~~~~getlvll--------gpsgagkssllr~-------l----nlle~   53 (242)
T COG4161           2 SIQLNGINCFYGAHQ---------ALFDITLDCPEGETLVLL--------GPSGAGKSSLLRV-------L----NLLEM   53 (242)
T ss_pred             ceEEcccccccccch---------heeeeeecCCCCCEEEEE--------CCCCCchHHHHHH-------H----HHHhC
Confidence            488999999996433         899999999999999999        999  99  8877       5    44555


Q ss_pred             cCCceeec-----------------cCCCcEEEEcCcCCCCC-CCHHHHHccC-CcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        156 LFGGTVTK-----------------PPRGKLFYVPQRPYMTL-GTLRDQVIYP-HTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       156 ~~~G~i~~-----------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~-~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      |.+|+...                 ..|+++|+|||+..+++ .|+.||+.-. ...... .+.....+..++++.+.+.
T Consensus        54 p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl-~~~qa~~~a~ellkrlrl~  132 (242)
T COG4161          54 PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGL-SKDQALARAEKLLKRLRLK  132 (242)
T ss_pred             CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCC-CHHHHHHHHHHHHHHhccc
Confidence            78887531                 23678999999988864 7999998743 211111 1111234567888888888


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      ++.++         |+-.|||||+|||+|||||+.+|++|++||||++|||+...++.+.+++   -|+|-+++||..+.
T Consensus       133 ~~adr---------~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v  203 (242)
T COG4161         133 PYADR---------YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV  203 (242)
T ss_pred             ccccc---------CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence            77766         5789999999999999999999999999999999999998888888776   48999999999887


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      ++
T Consensus       204 a~  205 (242)
T COG4161         204 AR  205 (242)
T ss_pred             HH
Confidence            65

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.1e-30  Score=230.00  Aligned_cols=179  Identities=23%  Similarity=0.281  Sum_probs=146.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+++++++++|.  ...       +++|+||++++||+++|+        |||  ||  ++++       +    .|+|+
T Consensus         4 lL~v~~l~k~FG--Gl~-------Al~~Vsl~v~~Gei~~LI--------GPNGAGKTTlfNl-------i----tG~~~   55 (250)
T COG0411           4 LLEVRGLSKRFG--GLT-------AVNDVSLEVRPGEIVGLI--------GPNGAGKTTLFNL-------I----TGFYK   55 (250)
T ss_pred             eeeeccceeecC--CEE-------EEeceeEEEcCCeEEEEE--------CCCCCCceeeeee-------e----ccccc
Confidence            478999999994  332       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcch----hhhh-------cCCCHHHHHHHHH
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKE----DMIQ-------KGITDADLTEYLQ  211 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~----~~~~-------~~~~~~~i~~~l~  211 (298)
                      |++|+|...            .+..|+--||.+.+|. .|+.||+..+....    ....       .....+++.++|+
T Consensus        56 P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le  135 (250)
T COG0411          56 PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE  135 (250)
T ss_pred             CCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHH
Confidence            999998632            2456889999998875 69999998763211    0000       0112356788899


Q ss_pred             HcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        212 KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       212 ~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      .++|.+..+++         ..+||+|||+|+.|||||+.+|++|+||||.+||.+.....+.+.+++    .|.|+++|
T Consensus       136 ~vgL~~~a~~~---------A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI  206 (250)
T COG0411         136 FVGLGELADRP---------AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI  206 (250)
T ss_pred             HcCCchhhcch---------hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            99998887765         569999999999999999999999999999999999888887777654    36999999


Q ss_pred             ecCcchhh
Q psy11400        288 SHRKSLWT  295 (298)
Q Consensus       288 tH~l~~~~  295 (298)
                      .||++++.
T Consensus       207 EHdM~~Vm  214 (250)
T COG0411         207 EHDMKLVM  214 (250)
T ss_pred             EeccHHHh
Confidence            99999765

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.4e-31  Score=261.19  Aligned_cols=182  Identities=20%  Similarity=0.194  Sum_probs=142.0

Q ss_pred             cEEEeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         80 LRGRLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +++++|+++.|+.+ ...       +++|+||+|++||+++|+        |||  ||  |+++       +    +|+.
T Consensus       257 ~l~~~~l~~~~~~~~~~~-------~l~~is~~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~G~~  310 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRK-------RVDDVSFSLRRGEILGVA--------GLVGAGRTELVQA-------L----FGAY  310 (500)
T ss_pred             eEEEeCCccccccccccc-------ccccceeEEeCCcEEEEe--------CCCCCCHHHHHHH-------H----hCCC
Confidence            68999999988422 222       899999999999999999        999  99  9999       8    9998


Q ss_pred             cc-CCceeecc------------CCCcEEEEcCcC---CCC-CCCHHHHHccCCcchh-h---hhcCCCHHHHHHHHHHc
Q psy11400        155 PL-FGGTVTKP------------PRGKLFYVPQRP---YMT-LGTLRDQVIYPHTKED-M---IQKGITDADLTEYLQKV  213 (298)
Q Consensus       155 ~~-~~G~i~~~------------~r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~-~---~~~~~~~~~i~~~l~~~  213 (298)
                      +| ++|+|...            .+++++|+||++   .++ ..|+++|+.++..... .   .......+++.++++.+
T Consensus       311 ~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  390 (500)
T TIGR02633       311 PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL  390 (500)
T ss_pred             CCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc
Confidence            85 89998531            135699999996   344 4699999987531100 0   00001124577888988


Q ss_pred             CCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400        214 QLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH  289 (298)
Q Consensus       214 ~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH  289 (298)
                      ++.+ ..++         ++.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++   .|.|||++||
T Consensus       391 ~l~~~~~~~---------~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH  461 (500)
T TIGR02633       391 KVKTASPFL---------PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSS  461 (500)
T ss_pred             CccCCCccC---------ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence            8853 3333         3679999999999999999999999999999999999999988876654   4899999999


Q ss_pred             Ccchhhh
Q psy11400        290 RKSLWTH  296 (298)
Q Consensus       290 ~l~~~~~  296 (298)
                      +++.+..
T Consensus       462 d~~~~~~  468 (500)
T TIGR02633       462 ELAEVLG  468 (500)
T ss_pred             CHHHHHH
Confidence            9987753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.97  E-value=6.7e-31  Score=226.40  Aligned_cols=142  Identities=26%  Similarity=0.324  Sum_probs=123.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|             +++++||++++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~~-------------~l~~vs~~i~~G~~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   51 (182)
T cd03215           4 VLEVRGLSVKG-------------AVRDVSFEVRAGEIVGIA--------GLVGNGQTELAEA-------L----FGLRP   51 (182)
T ss_pred             EEEEeccEEEe-------------eecceEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            58999999987             589999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcC---CC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRP---YM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~---~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|++...            .+++++|+||++   .+ +..|++||+.++.       .                    
T Consensus        52 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-------~--------------------  104 (182)
T cd03215          52 PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-------L--------------------  104 (182)
T ss_pred             CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh-------h--------------------
Confidence            999987531            145799999985   34 4569999987531       0                    


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                                     ||||||||++||||++.+|+++||||||++||+.+++.+.+.+++   .+.|+|++||+++.+.
T Consensus       105 ---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~  168 (182)
T cd03215         105 ---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL  168 (182)
T ss_pred             ---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence                           899999999999999999999999999999999999999888765   3799999999997664

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=1.4e-30  Score=259.84  Aligned_cols=178  Identities=20%  Similarity=0.193  Sum_probs=146.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    .|+.
T Consensus       321 ~~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLl~~-------l----~G~~  372 (552)
T TIGR03719       321 KVIEAENLSKGFGD-KL--------LIDDLSFKLPPGGIVGVI--------GPNGAGKSTLFRM-------I----TGQE  372 (552)
T ss_pred             eEEEEeeEEEEECC-ee--------eeccceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence            46999999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCC-CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCccccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPY-MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADW  231 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~  231 (298)
                      +|++|+|......+|+|+||++. ++ ..|+.||+.++.....   .........++++.+++.. ..++         .
T Consensus       373 ~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~---------~  440 (552)
T TIGR03719       373 QPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKREVPSRAYVGRFNFKGSDQQK---------K  440 (552)
T ss_pred             CCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcchHHHHHHHHhCCCChhHhcC---------c
Confidence            99999997643346999999973 44 4699999987542110   0111234567888888853 3343         3


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +.+|||||||||+|||||+.+|+++||||||++||+.+...+.+++++.+.|+|+|||+++.+..
T Consensus       441 ~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~  505 (552)
T TIGR03719       441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDR  505 (552)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            67999999999999999999999999999999999999999999999876699999999987653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.97  E-value=1.4e-30  Score=234.24  Aligned_cols=180  Identities=19%  Similarity=0.206  Sum_probs=133.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--  153 (298)
                      +++++|+++.|++ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+  
T Consensus         1 ~i~~~nl~~~~~~-~~--------~l~~isl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   52 (248)
T PRK09580          1 MLSIKDLHVSVED-KA--------ILRGLNLEVRPGEVHAIM--------GPNGSGKSTLSAT-------L----AGRED   52 (248)
T ss_pred             CeEEEEEEEEeCC-ee--------eeecceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCcc
Confidence            3789999999963 33        899999999999999999        999  99  9999       8    888  


Q ss_pred             cccCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCc-chhh-hhcCCC----HHHHHHHHHHcC
Q psy11400        154 WPLFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHT-KEDM-IQKGIT----DADLTEYLQKVQ  214 (298)
Q Consensus       154 ~~~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~-~~~~~~----~~~i~~~l~~~~  214 (298)
                      ++|++|+|...            .+..++|++|++.++.. +..+++.+... .... ......    .+.+.++++.++
T Consensus        53 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  132 (248)
T PRK09580         53 YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK  132 (248)
T ss_pred             CCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC
Confidence            46899987531            12459999999876543 54444322110 0000 000011    234566777777


Q ss_pred             Cc-hhhhhcCCcccccccC-CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400        215 LG-YILNREKGWDTVADWI-DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH  289 (298)
Q Consensus       215 l~-~~~~~~~g~d~~~~~~-~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH  289 (298)
                      +. ++.+++         + .+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++   .++|+|++||
T Consensus       133 l~~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH  203 (248)
T PRK09580        133 MPEDLLTRS---------VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH  203 (248)
T ss_pred             CChhhcccC---------CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            74 233221         3 37999999999999999999999999999999999999998887654   4789999999


Q ss_pred             Ccchhhh
Q psy11400        290 RKSLWTH  296 (298)
Q Consensus       290 ~l~~~~~  296 (298)
                      +++.+..
T Consensus       204 ~~~~~~~  210 (248)
T PRK09580        204 YQRILDY  210 (248)
T ss_pred             CHHHHHh
Confidence            9887654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.97  E-value=4.5e-31  Score=235.45  Aligned_cols=163  Identities=22%  Similarity=0.225  Sum_probs=129.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc----CCceeecc--------C-C
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL----FGGTVTKP--------P-R  166 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~----~~G~i~~~--------~-r  166 (298)
                      +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|    ++|+|...        . +
T Consensus         1 ~l~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~   61 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALV--------GESGSGKSLTCLA-------I----LGLLPPGLTQTSGEILLDGRPLLPLSIRG   61 (230)
T ss_pred             CccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCccCccccEEEECCEechhhhhhh
Confidence            578999999999999999        999  99  9999       8    999998    89998532        1 3


Q ss_pred             CcEEEEcCcCC--CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc---hhhhhcCCcccccccCCCCChhHH
Q psy11400        167 GKLFYVPQRPY--MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG---YILNREKGWDTVADWIDVLSGGEK  240 (298)
Q Consensus       167 ~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~---~~~~~~~g~d~~~~~~~~LSgGqk  240 (298)
                      +.++|+||++.  ++. .|+.+|+.+....... ......+++.++++.+++.   +..++         .+.+||||||
T Consensus        62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~G~~  131 (230)
T TIGR02770        62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEEVLKK---------YPFQLSGGML  131 (230)
T ss_pred             heeEEEecCchhhcCcccCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHcCCCchHHHHhC---------ChhhcCHHHH
Confidence            47999999984  333 5899988653210000 0011234578889999986   33333         3679999999


Q ss_pred             HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      |||+|||||+++|+++||||||++||+.+...+.+.+++    .++|+|++||+++.+.
T Consensus       132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  190 (230)
T TIGR02770       132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVA  190 (230)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999999999999999999999999999999988887764    3789999999998764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.97  E-value=1.2e-30  Score=228.46  Aligned_cols=158  Identities=18%  Similarity=0.174  Sum_probs=125.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+.++||+|.|+.++.     ...+++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++
T Consensus         3 ~~~~~~~~~~~~~~~~-----~~~il~~~s~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~   58 (202)
T cd03233           3 TLSWRNISFTTGKGRS-----KIPILKDFSGVVKPGEMVLVL--------GRPGSGCSTLLKA-------L----ANRTE   58 (202)
T ss_pred             eEEEEccEEEeccCCC-----CceeeeeEEEEECCCcEEEEE--------CCCCCCHHHHHHH-------h----cccCC
Confidence            3689999999986421     012999999999999999999        999  99  9999       8    99998


Q ss_pred             ---cCCceeec----------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 ---LFGGTVTK----------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ---~~~G~i~~----------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                         |++|+|..          ..++.++|+||++.++. .|++||+.+...        ..                .+ 
T Consensus        59 ~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~--------~~----------------~~-  113 (202)
T cd03233          59 GNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR--------CK----------------GN-  113 (202)
T ss_pred             CCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh--------hc----------------cc-
Confidence               88998752          12457999999997765 699999976421        00                11 


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEe-cCcchh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVS-HRKSLW  294 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiit-H~l~~~  294 (298)
                              .++..||+|||||++|||||+++|+++||||||++||+.+++.+.+.+++   . +.|+|+++ |+.+.+
T Consensus       114 --------~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~  183 (202)
T cd03233         114 --------EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI  183 (202)
T ss_pred             --------cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH
Confidence                    13568999999999999999999999999999999999999999888765   2 56766655 554443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.97  E-value=9.8e-31  Score=227.30  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=125.3

Q ss_pred             cEEEeeeeEecCCC--CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSG--GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~--~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .++++|+++.|+++  ..+       +++|+||++++|++++|+        |+|  ||  |+++       +    +|+
T Consensus         3 ~l~~~~l~~~~~~~~~~~~-------~l~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~   56 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQ-------LLNNISGYVKPGTLTALM--------GESGAGKTTLLDV-------L----AGR   56 (192)
T ss_pred             EEEEeeeEEEecCCCCceE-------eEEccEEEEeCCcEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            47899999999642  122       899999999999999999        999  99  9999       7    887


Q ss_pred             c--ccCCceeecc-------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        154 W--PLFGGTVTKP-------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       154 ~--~~~~G~i~~~-------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      .  +|++|++...       .++.++|++|++.++. .|+++|+.++.                 .++            
T Consensus        57 ~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-----------------~~~------------  107 (192)
T cd03232          57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSA-----------------LLR------------  107 (192)
T ss_pred             CcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHH-----------------HHh------------
Confidence            5  4789998532       2457999999997765 59999987531                 000            


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                                +||||||||++||||++.+|+++||||||++||+.+...+.+.+++   .++|+|++||+++
T Consensus       108 ----------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         108 ----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             ----------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence                      5999999999999999999999999999999999999999888765   3799999999987

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.97  E-value=4e-31  Score=235.13  Aligned_cols=176  Identities=22%  Similarity=0.202  Sum_probs=133.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      +.++|+++.|.+ ..        +++|+||+|++|++++|+        |+|  ||  |+++       +    +|+++|
T Consensus        23 l~~~~~~~~~~~-~~--------il~~vs~~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G~~~p   74 (224)
T cd03220          23 LGILGRKGEVGE-FW--------ALKDVSFEVPRGERIGLI--------GRNGAGKSTLLRL-------L----AGIYPP   74 (224)
T ss_pred             hhhhhhhhhcCC-eE--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            567778877743 33        999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCC
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL  235 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~L  235 (298)
                      ++|+|..... .+.+..+...+ +..|++||+.++...... ......+++.++++.+++.+..+++         +.+|
T Consensus        75 ~~G~i~~~g~-~~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~L  143 (224)
T cd03220          75 DSGTVTVRGR-VSSLLGLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLP---------VKTY  143 (224)
T ss_pred             CceEEEECCE-EchhhcccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCC---------hhhC
Confidence            9999875432 12222222323 457999999764211000 0011123566778888887655543         5789


Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      |||||||++|||||+++|+++||||||++||+.++..+.+.+++   .++|+|++||+++.+.
T Consensus       144 SgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~  206 (224)
T cd03220         144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIK  206 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999988887764   3789999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=1.7e-30  Score=259.31  Aligned_cols=178  Identities=20%  Similarity=0.188  Sum_probs=146.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +|+|+||+|++|++++|+        |+|  ||  |+++       +    .|+.
T Consensus       323 ~~l~~~~l~~~~~~-~~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLl~~-------i----~G~~  374 (556)
T PRK11819        323 KVIEAENLSKSFGD-RL--------LIDDLSFSLPPGGIVGII--------GPNGAGKSTLFKM-------I----TGQE  374 (556)
T ss_pred             eEEEEEeEEEEECC-ee--------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            47999999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcC-CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCccccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRP-YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADW  231 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~  231 (298)
                      +|++|+|......+|||+||++ .++ ..|+++|+.++.....   ..........+++.+++.. ..++         .
T Consensus       375 ~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~---------~  442 (556)
T PRK11819        375 QPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNREIPSRAYVGRFNFKGGDQQK---------K  442 (556)
T ss_pred             CCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccccHHHHHHHHHhCCCChhHhcC---------c
Confidence            9999999764334699999997 454 4699999987532110   0112334567888888853 3343         3


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +.+||||||||++|||||+.+|++|||||||++||+.+...+.+++++...|+|+|||+++.+..
T Consensus       443 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~  507 (556)
T PRK11819        443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDR  507 (556)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            67999999999999999999999999999999999999999999998875699999999987643

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-30  Score=227.94  Aligned_cols=177  Identities=21%  Similarity=0.260  Sum_probs=141.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++..|..  ..       +|+++||++++||+++++        |+|  ||  +++.       +    .|+.+
T Consensus         3 mL~v~~l~~~YG~--~~-------~L~gvsl~v~~Geiv~ll--------G~NGaGKTTlLkt-------i----~Gl~~   54 (237)
T COG0410           3 MLEVENLSAGYGK--IQ-------ALRGVSLEVERGEIVALL--------GRNGAGKTTLLKT-------I----MGLVR   54 (237)
T ss_pred             ceeEEeEeecccc--ee-------EEeeeeeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6899999999953  32       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcC-Cchhhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~  221 (298)
                      +.+|+|...            .+..|+||||.-.+|. .||.||+..+......  .......++++.+.+. |.+..++
T Consensus        55 ~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~  132 (237)
T COG0410          55 PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQ  132 (237)
T ss_pred             CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcC
Confidence            999998631            2567999999998775 6999999976432110  0111122666666664 3333333


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                               +..+|||||||.++|||||+.+|++|+|||||.||-|...+.|.+.+++    .+.||++|.++...+.
T Consensus       133 ---------~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al  201 (237)
T COG0410         133 ---------RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL  201 (237)
T ss_pred             ---------cccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence                     4679999999999999999999999999999999999988888877654    3779999999877554

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=6.1e-31  Score=255.74  Aligned_cols=186  Identities=23%  Similarity=0.250  Sum_probs=141.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|....     .+..+++|+||+|.+||+++|+        |.|  ||  +.+.       +    .|+.+
T Consensus         5 lL~V~nL~v~~~~~~-----~~~~~v~~vsf~v~~GE~lgIv--------GESGsGKSt~a~~-------i----~gll~   60 (539)
T COG1123           5 LLEVENLTVEFATDG-----GRVPAVRDVSFEVEPGEILGIV--------GESGSGKSTLALA-------L----MGLLP   60 (539)
T ss_pred             eEEEeceEEEEecCC-----cceeeeecceEEecCCcEEEEE--------cCCCCCHHHHHHH-------H----hccCC
Confidence            689999999996432     1123999999999999999999        999  99  6665       5    66666


Q ss_pred             cC----Cceeecc---------------CCCcEEEEcCcCC--CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400        156 LF----GGTVTKP---------------PRGKLFYVPQRPY--MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV  213 (298)
Q Consensus       156 ~~----~G~i~~~---------------~r~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~  213 (298)
                      +.    +|+|...               ..+.|+|+||+|.  +-+ .|+.++|.-..............+++.++++.+
T Consensus        61 ~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V  140 (539)
T COG1123          61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV  140 (539)
T ss_pred             CCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc
Confidence            55    6887321               2367999999995  323 588888863221110000112345678899999


Q ss_pred             CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEec
Q psy11400        214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSH  289 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH  289 (298)
                      ++.+-..+       ..++++||||||||+.||+||+.+|++||+||||++||+.++.+|++++++    .|+++|+|||
T Consensus       141 gl~~~~~~-------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH  213 (539)
T COG1123         141 GLPDPERR-------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH  213 (539)
T ss_pred             CCCChhhh-------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC
Confidence            99754322       225899999999999999999999999999999999999999999988764    5999999999


Q ss_pred             Ccchhhh
Q psy11400        290 RKSLWTH  296 (298)
Q Consensus       290 ~l~~~~~  296 (298)
                      |+..+..
T Consensus       214 Dl~Vva~  220 (539)
T COG1123         214 DLGVVAE  220 (539)
T ss_pred             CHHHHHH
Confidence            9998764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.3e-31  Score=225.79  Aligned_cols=179  Identities=21%  Similarity=0.195  Sum_probs=140.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+.+.|... .        +|+++||+-++|+.+.|+        |.|  ||  ++++       +    .-+..
T Consensus         6 ~l~v~dlHK~~G~~-e--------VLKGvSL~A~~GdVisII--------GsSGSGKSTfLRC-------i----N~LE~   57 (256)
T COG4598           6 ALEVEDLHKRYGEH-E--------VLKGVSLQANAGDVISII--------GSSGSGKSTFLRC-------I----NFLEK   57 (256)
T ss_pred             ceehhHHHhhcccc-h--------hhcceeeecCCCCEEEEe--------cCCCCchhHHHHH-------H----HhhcC
Confidence            58899999999532 2        899999999999999999        999  99  8888       6    66777


Q ss_pred             cCCceeec------------------------cCCCcEEEEcCcCCCCC-CCHHHHHccCC-cchhhhhcCCCHHHHHHH
Q psy11400        156 LFGGTVTK------------------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPH-TKEDMIQKGITDADLTEY  209 (298)
Q Consensus       156 ~~~G~i~~------------------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~i~~~  209 (298)
                      |..|.|..                        ..|.+.++|||+..++. +|+.||+.-.. ..... .+....++...+
T Consensus        58 P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~-~k~ea~e~Ae~~  136 (256)
T COG4598          58 PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV-SKAEAIERAEKY  136 (256)
T ss_pred             CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC-CHHHHHHHHHHH
Confidence            88888631                        12567999999999874 79999987431 11100 111123556777


Q ss_pred             HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEE
Q psy11400        210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFT  286 (298)
Q Consensus       210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIi  286 (298)
                      |..+|+.+-.+.         ++..|||||+||++|||||+.+|+++++|||||+|||+...++++.++   +.|+|+++
T Consensus       137 L~kVGi~ek~~~---------YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~  207 (256)
T COG4598         137 LAKVGIAEKADA---------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVV  207 (256)
T ss_pred             HHHhCchhhhhc---------CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEE
Confidence            888888654443         478999999999999999999999999999999999987776655443   45999999


Q ss_pred             EecCcchhhh
Q psy11400        287 VSHRKSLWTH  296 (298)
Q Consensus       287 itH~l~~~~~  296 (298)
                      |||.+..++.
T Consensus       208 VTHEM~FAR~  217 (256)
T COG4598         208 VTHEMGFARD  217 (256)
T ss_pred             EeeehhHHHh
Confidence            9999987764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.97  E-value=2.3e-30  Score=259.38  Aligned_cols=172  Identities=23%  Similarity=0.196  Sum_probs=145.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|.+  .        .|+++||+|++||+++|+        |||  ||  |+++       |    +|+.
T Consensus       339 ~~l~~~~ls~~~~~--~--------~l~~~s~~i~~Geiv~l~--------G~NGsGKSTLlk~-------L----~Gl~  389 (590)
T PRK13409        339 TLVEYPDLTKKLGD--F--------SLEVEGGEIYEGEVIGIV--------GPNGIGKTTFAKL-------L----AGVL  389 (590)
T ss_pred             eEEEEcceEEEECC--E--------EEEecceEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            36899999999942  3        689999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+|...  .+++|+||++.+ +..|+++|+.++...     .. ....+.++++.+++.+..+++         +.
T Consensus       390 ~p~~G~I~~~--~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~-~~~~~~~~L~~l~l~~~~~~~---------~~  452 (590)
T PRK13409        390 KPDEGEVDPE--LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG-SSYYKSEIIKPLQLERLLDKN---------VK  452 (590)
T ss_pred             CCCceEEEEe--eeEEEecccccCCCCCcHHHHHHHHhhh-----cC-hHHHHHHHHHHCCCHHHHhCC---------cc
Confidence            9999998754  469999999865 467999999864210     11 233567889999998766654         78


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +|||||||||+|||||+.+|++|||||||++||+.+...+.+++++    .++|+|+|||++..+..
T Consensus       453 ~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~  519 (590)
T PRK13409        453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY  519 (590)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999999999998888765    38999999999987653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.97  E-value=1.9e-30  Score=234.18  Aligned_cols=161  Identities=22%  Similarity=0.243  Sum_probs=129.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~  168 (298)
                      +|+|+||+|++|++++|+        |+|  ||  |+++       +    +|+.++ +|+|...           .++.
T Consensus        11 ~l~~vsl~i~~Gei~~l~--------G~nGsGKSTLl~~-------l----~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~   70 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGLLPG-SGSIQFAGQPLEAWSAAELARH   70 (248)
T ss_pred             eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC-CeEEEECCEecCcCCHHHHhhh
Confidence            799999999999999999        999  99  9999       8    888864 8987531           1245


Q ss_pred             EEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400        169 LFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMAR  247 (298)
Q Consensus       169 i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR  247 (298)
                      ++|+||++.+ +..|+++|+.+.....  .......+++.++++.+++.+..+++         +..||||||||++|||
T Consensus        71 i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~  139 (248)
T PRK03695         71 RAYLSQQQTPPFAMPVFQYLTLHQPDK--TRTEAVASALNEVAEALGLDDKLGRS---------VNQLSGGEWQRVRLAA  139 (248)
T ss_pred             eEEecccCccCCCccHHHHHHhcCccC--CCcHHHHHHHHHHHHHcCCHhHhcCC---------cccCCHHHHHHHHHHH
Confidence            9999999864 4679999998753210  00111134678889999987655443         6799999999999999


Q ss_pred             HHhc-------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        248 LFYH-------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       248 aL~~-------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ||+.       +|+++||||||++||+.....+.+++++   .++|+|++||+++.+.
T Consensus       140 al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~  197 (248)
T PRK03695        140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL  197 (248)
T ss_pred             HHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            9997       6799999999999999999999888764   3799999999998654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=242.91  Aligned_cols=190  Identities=24%  Similarity=0.297  Sum_probs=145.7

Q ss_pred             CcEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         79 NLRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      ..++.++|.+.||-..  ........++++++||++++||.++||        |.|  ||  +-..       |    .+
T Consensus       275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV--------GESGSGKsTlG~a-------l----lr  335 (534)
T COG4172         275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV--------GESGSGKSTLGLA-------L----LR  335 (534)
T ss_pred             ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE--------ecCCCCcchHHHH-------H----Hh
Confidence            4689999999997432  111123346999999999999999999        999  99  4444       3    33


Q ss_pred             ccccCCceee--------------ccCCCcEEEEcCcCC--C-CCCCHHHHHccCCcchh-hhhcCCCHHHHHHHHHHcC
Q psy11400        153 LWPLFGGTVT--------------KPPRGKLFYVPQRPY--M-TLGTLRDQVIYPHTKED-MIQKGITDADLTEYLQKVQ  214 (298)
Q Consensus       153 l~~~~~G~i~--------------~~~r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~-~~~~~~~~~~i~~~l~~~~  214 (298)
                      +.++ +|.|.              .+.|+++-.||||||  + +..||.+.|.-+....+ .......++++.++++.+|
T Consensus       336 L~~s-~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVG  414 (534)
T COG4172         336 LIPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG  414 (534)
T ss_pred             hcCc-CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcC
Confidence            4333 36653              245788999999998  3 34799998887654332 1112223567889999999


Q ss_pred             CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      ++.-        +..++++++|||||||+|||||++.+|++++||||||+||...+.++.+++++    .+.+.++||||
T Consensus       415 LDp~--------~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD  486 (534)
T COG4172         415 LDPA--------TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD  486 (534)
T ss_pred             CChh--------HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence            9742        22335899999999999999999999999999999999999999999988765    48999999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      +..++.
T Consensus       487 L~VvrA  492 (534)
T COG4172         487 LAVVRA  492 (534)
T ss_pred             HHHHHH
Confidence            998874

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=5e-31  Score=231.61  Aligned_cols=178  Identities=22%  Similarity=0.221  Sum_probs=144.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++++++|+++|.+ ..        +++|+||++++|++++++        |+|  ||  .+|+       +    .|+.+
T Consensus         2 ~L~ie~vtK~Fg~-k~--------av~~isf~v~~G~i~Gll--------G~NGAGKTTtfRm-------I----Lglle   53 (300)
T COG4152           2 ALEIEGVTKSFGD-KK--------AVDNISFEVPPGEIFGLL--------GPNGAGKTTTFRM-------I----LGLLE   53 (300)
T ss_pred             ceEEecchhccCc-ee--------eecceeeeecCCeEEEee--------cCCCCCccchHHH-------H----hccCC
Confidence            4789999999953 33        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        156 LFGGTVTKP-------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       156 ~~~G~i~~~-------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                      |++|+|+..       .+.+|||+|.+--++ ..|+.|.+.|......+. ......++..+|+++++.....+      
T Consensus        54 ~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~-~~e~~~~~~~wLer~~i~~~~~~------  126 (300)
T COG4152          54 PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP-KAEIQKKLQAWLERLEIVGKKTK------  126 (300)
T ss_pred             ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhccccccccc------
Confidence            999998643       246799999998876 479999999854322111 01123457778888888654433      


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWT  295 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~  295 (298)
                         ++.+||.|++|++.+..+++|+|+++|||||+|||||.+.+.+.+.+.   +.|.|||++||+++-+.
T Consensus       127 ---kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vE  194 (300)
T COG4152         127 ---KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVE  194 (300)
T ss_pred             ---hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHH
Confidence               478999999999999999999999999999999999988877776644   46999999999998654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.97  E-value=7.4e-31  Score=225.75  Aligned_cols=153  Identities=25%  Similarity=0.320  Sum_probs=118.2

Q ss_pred             EEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC
Q psy11400         82 GRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF  157 (298)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~  157 (298)
                      +++||++.|+. ..        +++|+||++++|++++|+        |+|  ||  |+++       +    .|+++|+
T Consensus         1 ~~~~l~~~~~~-~~--------~l~~~~~~i~~G~~~~l~--------G~nGsGKStLl~~-------i----~G~~~~~   52 (180)
T cd03214           1 EVENLSVGYGG-RT--------VLDDLSLSIEAGEIVGIL--------GPNGAGKSTLLKT-------L----AGLLKPS   52 (180)
T ss_pred             CeeEEEEEECC-ee--------eEeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCC
Confidence            37899999964 33        899999999999999999        999  99  9999       8    9999999


Q ss_pred             CceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCCh
Q psy11400        158 GGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG  237 (298)
Q Consensus       158 ~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSg  237 (298)
                      +|+|..... .+   .+.   .....+..+.|                +.++++.+++.+..++         .+.+|||
T Consensus        53 ~G~v~~~g~-~~---~~~---~~~~~~~~i~~----------------~~q~l~~~gl~~~~~~---------~~~~LS~  100 (180)
T cd03214          53 SGEILLDGK-DL---ASL---SPKELARKIAY----------------VPQALELLGLAHLADR---------PFNELSG  100 (180)
T ss_pred             CcEEEECCE-EC---CcC---CHHHHHHHHhH----------------HHHHHHHcCCHhHhcC---------CcccCCH
Confidence            999864321 01   000   00011111111                1116777888765544         2678999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchh
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLW  294 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~  294 (298)
                      |||||++|||||+.+|+++||||||++||+.+.+.+.+.+++   . +.|+|++||+++.+
T Consensus       101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~  161 (180)
T cd03214         101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA  161 (180)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            999999999999999999999999999999999999887764   2 78999999999875

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.97  E-value=4.6e-30  Score=224.49  Aligned_cols=146  Identities=21%  Similarity=0.230  Sum_probs=120.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--c
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--W  154 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--~  154 (298)
                      ++++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+  .
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~is~~i~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~   52 (200)
T cd03217           1 LEIKDLHVSVGG-KE--------ILKGVNLTIKKGEVHALM--------GPNGSGKSTLAKT-------I----MGHPKY   52 (200)
T ss_pred             CeEEEEEEEeCC-EE--------eeeccceEECCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCcC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    888  4


Q ss_pred             ccCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        155 PLFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|++|+|...            .+..++|+||++.++.+ ++++++                                +.
T Consensus        53 ~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~  100 (200)
T cd03217          53 EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY  100 (200)
T ss_pred             CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH--------------------------------hh
Confidence            7899987531            12359999999876543 443333                                01


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               ...+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .++|+|++||+++.+.
T Consensus       101 ---------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~  168 (200)
T cd03217         101 ---------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD  168 (200)
T ss_pred             ---------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence                     0247999999999999999999999999999999999999999888765   3789999999998765

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PLN03073 ABC transporter F family; Provisional

Probab=99.97  E-value=5.9e-30  Score=261.01  Aligned_cols=178  Identities=20%  Similarity=0.268  Sum_probs=143.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.|+++..        +++|+||+|++|++++|+        |||  ||  |+++       +    .|+.
T Consensus       507 ~~L~~~~ls~~y~~~~~--------il~~vsl~i~~Ge~i~Lv--------G~NGsGKSTLLk~-------L----~Gll  559 (718)
T PLN03073        507 PIISFSDASFGYPGGPL--------LFKNLNFGIDLDSRIAMV--------GPNGIGKSTILKL-------I----SGEL  559 (718)
T ss_pred             ceEEEEeeEEEeCCCCe--------eEeccEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            46999999999964444        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+|....+.+|+|++|++. ...++.++.......  . ......+++.++++.+++.. ..+++         +.
T Consensus       560 ~p~~G~I~~~~~~~igyv~Q~~~-~~l~~~~~~~~~~~~--~-~~~~~~~~i~~~L~~~gl~~~~~~~~---------~~  626 (718)
T PLN03073        560 QPSSGTVFRSAKVRMAVFSQHHV-DGLDLSSNPLLYMMR--C-FPGVPEQKLRAHLGSFGVTGNLALQP---------MY  626 (718)
T ss_pred             CCCCceEEECCceeEEEEecccc-ccCCcchhHHHHHHH--h-cCCCCHHHHHHHHHHCCCChHHhcCC---------cc
Confidence            99999998766668999999873 222444443211000  0 01234567888999999963 44443         67


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+|||++..+..
T Consensus       627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~  689 (718)
T PLN03073        627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG  689 (718)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            999999999999999999999999999999999999999999888755699999999987653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.97  E-value=8.8e-30  Score=257.81  Aligned_cols=177  Identities=20%  Similarity=0.196  Sum_probs=145.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.|++ ..        +++|+||+|++|++++|+        |||  ||  |+++       +    .|+.
T Consensus       318 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------l----~G~~  369 (635)
T PRK11147        318 IVFEMENVNYQIDG-KQ--------LVKDFSAQVQRGDKIALI--------GPNGCGKTTLLKL-------M----LGQL  369 (635)
T ss_pred             ceEEEeeeEEEECC-eE--------EEcCcEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            46899999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcC-CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcCCccccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRP-YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKGWDTVADW  231 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~  231 (298)
                      +|++|+|.....-.|+|++|++ .++ ..|+.+|+.++....   .......++.++++.+++. +..++         .
T Consensus       370 ~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~---------~  437 (635)
T PRK11147        370 QADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNGRPRHVLGYLQDFLFHPKRAMT---------P  437 (635)
T ss_pred             CCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccc---cccchHHHHHHHHHhcCCCHHHHhC---------h
Confidence            9999999764334699999986 344 469999998643210   0011134577788888885 34444         3


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++.+.|||+|||+.+.+.
T Consensus       438 ~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~  501 (635)
T PRK11147        438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD  501 (635)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            6799999999999999999999999999999999999999999999987779999999998764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.3e-30  Score=254.30  Aligned_cols=165  Identities=18%  Similarity=0.205  Sum_probs=131.6

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC------------CC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP------------RG  167 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~------------r~  167 (298)
                      +++|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|+|....            ++
T Consensus       268 ~l~~isl~i~~Ge~~~ii--------G~NGsGKSTLlk~-------l----~G~~~p~~G~i~~~g~~~~~~~~~~~~~~  328 (501)
T PRK11288        268 LREPISFSVRAGEIVGLF--------GLVGAGRSELMKL-------L----YGATRRTAGQVYLDGKPIDIRSPRDAIRA  328 (501)
T ss_pred             cccceeEEEeCCcEEEEE--------cCCCCCHHHHHHH-------H----cCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence            899999999999999999        999  99  9999       8    999999999986321            25


Q ss_pred             cEEEEcCcCC---CC-CCCHHHHHccCCcchh---h--hhcCCCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCCh
Q psy11400        168 KLFYVPQRPY---MT-LGTLRDQVIYPHTKED---M--IQKGITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSG  237 (298)
Q Consensus       168 ~i~~v~Q~~~---l~-~~tv~eni~~~~~~~~---~--~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSg  237 (298)
                      .++|+||++.   ++ ..|+.||+.++.....   .  .......+.+.++++.+++. +..++         .+.+|||
T Consensus       329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSg  399 (501)
T PRK11288        329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQ---------LIMNLSG  399 (501)
T ss_pred             CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccC---------ccccCCH
Confidence            6999999973   44 5799999986432110   0  00001124567888888883 44444         3679999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ||||||+|||||+.+|++|||||||++||+.+...+.+++++   .|.|||+|||+++.+..
T Consensus       400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~  461 (501)
T PRK11288        400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLG  461 (501)
T ss_pred             HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHh
Confidence            999999999999999999999999999999999999887644   48999999999987753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=3.5e-30  Score=254.09  Aligned_cols=165  Identities=22%  Similarity=0.302  Sum_probs=131.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------------CCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------------PRG  167 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------------~r~  167 (298)
                      +++|+||+|++||+++|+        |||  ||  |+++       +    .|+.+|++|+|...            .++
T Consensus       267 ~l~~vsl~i~~Ge~~~li--------G~NGsGKSTLl~~-------l----~G~~~p~~G~I~~~g~~i~~~~~~~~~~~  327 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVS--------GLMGAGRTELMKV-------L----YGALPRTSGYVTLDGHEVVTRSPQDGLAN  327 (501)
T ss_pred             CcccceEEEcCCcEEEEe--------cCCCCCHHHHHHH-------H----hCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence            799999999999999999        999  99  9999       8    99999999998532            134


Q ss_pred             cEEEEcCcC---CCC-CCCHHHHHccCCcch--h---hhhcCCCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCCh
Q psy11400        168 KLFYVPQRP---YMT-LGTLRDQVIYPHTKE--D---MIQKGITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSG  237 (298)
Q Consensus       168 ~i~~v~Q~~---~l~-~~tv~eni~~~~~~~--~---~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSg  237 (298)
                      +++|+||++   .++ ..|+.+|+.++....  .   ........+++.++++.+++. +..++         .+.+|||
T Consensus       328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSg  398 (501)
T PRK10762        328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ---------AIGLLSG  398 (501)
T ss_pred             CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC---------chhhCCH
Confidence            699999997   344 469999998753100  0   000001134577888888884 44444         3679999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ||||||+|||||+.+|++|||||||++||+.+.+.+.+++++   .|.|+|++||+++.+..
T Consensus       399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~  460 (501)
T PRK10762        399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLG  460 (501)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence            999999999999999999999999999999999998888765   47899999999987653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-29  Score=256.98  Aligned_cols=179  Identities=17%  Similarity=0.162  Sum_probs=141.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|.++||+++|.. ..        +|+|+||+|++|++++|+        |||  ||  |+++       |    +|+.+
T Consensus         1 ~i~i~nls~~~g~-~~--------~l~~vs~~i~~Ge~v~Lv--------G~NGsGKSTLLki-------L----~G~~~   52 (638)
T PRK10636          1 MIVFSSLQIRRGV-RV--------LLDNATATINPGQKVGLV--------GKNGCGKSTLLAL-------L----KNEIS   52 (638)
T ss_pred             CEEEEEEEEEeCC-ce--------eecCcEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            4789999999953 34        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcc-----------------------hhhhh---cCCCHHHHHHH
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTK-----------------------EDMIQ---KGITDADLTEY  209 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-----------------------~~~~~---~~~~~~~i~~~  209 (298)
                      |++|+|.......++|++|++..+..++.+.+......                       .....   ......++.++
T Consensus        53 pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (638)
T PRK10636         53 ADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL  132 (638)
T ss_pred             CCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            99999987655569999997644445665554321000                       00000   00113456777


Q ss_pred             HHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400        210 LQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS  288 (298)
Q Consensus       210 l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit  288 (298)
                      ++.+++. +..++         .+.+|||||||||+|||||+.+|++|||||||++||+.+..++.+++++.+.|||+||
T Consensus       133 L~~lgl~~~~~~~---------~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivs  203 (638)
T PRK10636        133 LHGLGFSNEQLER---------PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILIS  203 (638)
T ss_pred             HHhCCCCchhhcC---------chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Confidence            8888875 34444         3679999999999999999999999999999999999999999999998888999999


Q ss_pred             cCcchhh
Q psy11400        289 HRKSLWT  295 (298)
Q Consensus       289 H~l~~~~  295 (298)
                      |+...+.
T Consensus       204 Hd~~~l~  210 (638)
T PRK10636        204 HDRDFLD  210 (638)
T ss_pred             CCHHHHH
Confidence            9998764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.96  E-value=7.1e-30  Score=226.88  Aligned_cols=158  Identities=25%  Similarity=0.294  Sum_probs=127.0

Q ss_pred             EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC------CCcEEEEcCcCCC-
Q psy11400        110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP------RGKLFYVPQRPYM-  178 (298)
Q Consensus       110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~------r~~i~~v~Q~~~l-  178 (298)
                      |+|++|++++|+        |+|  ||  |+++       +    +|+++|++|+|....      +++++|+||++.+ 
T Consensus         1 l~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~   61 (223)
T TIGR03771         1 LSADKGELLGLL--------GPNGAGKTTLLRA-------I----LGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA   61 (223)
T ss_pred             CccCCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCceEEECCccchHhhCcEEEeccccccc
Confidence            578999999999        999  99  9999       8    999999999986432      4579999999865 


Q ss_pred             --CCCCHHHHHccCCcch-hhhh-c-CCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC
Q psy11400        179 --TLGTLRDQVIYPHTKE-DMIQ-K-GITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP  253 (298)
Q Consensus       179 --~~~tv~eni~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P  253 (298)
                        +..|+.+|+.++.... .... . ....+++.++++.+++.+..+.         .+.+||||||||++|||||+++|
T Consensus        62 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~~~p  132 (223)
T TIGR03771        62 WDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR---------PVGELSGGQRQRVLVARALATRP  132 (223)
T ss_pred             CCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcC---------ChhhCCHHHHHHHHHHHHHhcCC
Confidence              3469999997753210 0000 0 1123457788999998765544         36789999999999999999999


Q ss_pred             CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        254 QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       254 ~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +++||||||++||+.+.+.+.+.+++   .++|+|++||+++.+.
T Consensus       133 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~  177 (223)
T TIGR03771       133 SVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM  177 (223)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            99999999999999999999888764   4789999999998654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.3e-29  Score=256.62  Aligned_cols=173  Identities=20%  Similarity=0.244  Sum_probs=143.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    .|+.
T Consensus       311 ~~l~~~~l~~~y~~-~~--------il~~isl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------l----~G~~  362 (638)
T PRK10636        311 PLLKMEKVSAGYGD-RI--------ILDSIKLNLVPGSRIGLL--------GRNGAGKSTLIKL-------L----AGEL  362 (638)
T ss_pred             ceEEEEeeEEEeCC-ee--------eeccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            46999999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcC--CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRP--YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVAD  230 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~  230 (298)
                      +|++|+|......++||++|++  .+. ..|+.+++....       .......+.++++.+++.. ..+++        
T Consensus       363 ~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~l~~~~~~~~--------  427 (638)
T PRK10636        363 APVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLA-------PQELEQKLRDYLGGFGFQGDKVTEE--------  427 (638)
T ss_pred             CCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhC-------chhhHHHHHHHHHHcCCChhHhcCc--------
Confidence            9999999765445799999985  233 347777763211       1123456788899998853 44443        


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                       +.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+++++.+.|||+|||++..+.
T Consensus       428 -~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~  491 (638)
T PRK10636        428 -TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLR  491 (638)
T ss_pred             -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence             6799999999999999999999999999999999999999999999887779999999998765

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=7.5e-30  Score=279.24  Aligned_cols=181  Identities=19%  Similarity=0.165  Sum_probs=149.3

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|+.++..       +++|+||++++||+++|+        |+|  ||  |+++       +    .|+.
T Consensus       927 ~~L~I~nLsK~y~~~~k~-------aL~~lsl~I~~Gei~aLL--------G~NGAGKSTLLki-------L----aGLl  980 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRP-------AVDRLNITFYENQITAFL--------GHNGAGKTTTLSI-------L----TGLL  980 (2272)
T ss_pred             ceEEEEeEEEEecCCCce-------EEEeeEEEEcCCcEEEEE--------CCCCChHHHHHHH-------H----hcCC
Confidence            368999999999633322       999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        155 PLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      +|++|++...          .++.+||+||++.++. .|++||+.++...... ......+++.++++.+++.+..+++ 
T Consensus       981 ~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~-~~~~~~~~v~~lL~~vgL~~~~~~~- 1058 (2272)
T TIGR01257       981 PPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDTGLHHKRNEE- 1058 (2272)
T ss_pred             CCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCC-
Confidence            9999998531          2467999999998775 6999999875321100 0011235678899999998766553 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                              +.+|||||||||+|||||+.+|+++||||||||||+.+++.+++++++  .|+|||++||+++.+.
T Consensus      1059 --------~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~ 1124 (2272)
T TIGR01257      1059 --------AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124 (2272)
T ss_pred             --------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence                    679999999999999999999999999999999999999999998876  3899999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1e-29  Score=245.59  Aligned_cols=179  Identities=20%  Similarity=0.219  Sum_probs=145.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|++++|+.- .        +|+|+||++++||+++++        |.|  ||  |+|+       |    .|.|+
T Consensus         8 ll~~~~i~K~FggV-~--------AL~~v~l~v~~GEV~aL~--------GeNGAGKSTLmKi-------L----sGv~~   59 (500)
T COG1129           8 LLELRGISKSFGGV-K--------ALDGVSLTVRPGEVHALL--------GENGAGKSTLMKI-------L----SGVYP   59 (500)
T ss_pred             eeeeecceEEcCCc-e--------eeccceeEEeCceEEEEe--------cCCCCCHHHHHHH-------H----hCccc
Confidence            58899999999742 3        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchh---hhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKED---MIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~---~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|...            ....|+.|+|+..+. +.||.|||.++..+..   ...+....++..++++.+++....
T Consensus        60 p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~  139 (500)
T COG1129          60 PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP  139 (500)
T ss_pred             CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCCh
Confidence            999998632            134699999999875 6799999988764321   111112245667788888875212


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~  295 (298)
                      +.         ...+||.||||.|+||||+..+++++|||||||+|+....+.+++.++   +.|.++|+||||++.+.
T Consensus       140 ~~---------~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~  209 (500)
T COG1129         140 DT---------LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF  209 (500)
T ss_pred             hh---------hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence            22         367999999999999999999999999999999999988777777655   46999999999998764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=1.6e-29  Score=230.31  Aligned_cols=185  Identities=13%  Similarity=0.061  Sum_probs=139.1

Q ss_pred             cEEEeeeeEecCCCC----------CCC-CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcc
Q psy11400         80 LRGRLGITLGLRSGG----------LGF-DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYM  144 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~----------~~~-~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~  144 (298)
                      .++++||++.|...+          .++ ......+++|+||+|++|++++|+        |+|  ||  |+++      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~li--------G~NGsGKSTLlk~------   69 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLV--------GINGSGKSTLSNI------   69 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH------
Confidence            467777777664311          001 112234899999999999999999        999  99  9999      


Q ss_pred             ccccccccccccCCceeeccCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        145 TLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       145 ~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                       +    +|+++|++|+|....  .+++++|++.++ ..|+.+|+.++...... ......+.+.++++.+++.+..+++ 
T Consensus        70 -L----~Gl~~p~~G~I~~~g--~~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-  140 (264)
T PRK13546         70 -I----GGSLSPTVGKVDRNG--EVSVIAISAGLSGQLTGIENIEFKMLCMGF-KRKEIKAMTPKIIEFSELGEFIYQP-  140 (264)
T ss_pred             -H----hCCcCCCceEEEECC--EEeEEecccCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC-
Confidence             8    999999999987543  477888888665 46999999764211000 0000112345567777777655543 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                              +.+|||||+||++||||++.+|++|||||||++||+.+...+.+.+.+   .++|+|++||+++.+.
T Consensus       141 --------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~  207 (264)
T PRK13546        141 --------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR  207 (264)
T ss_pred             --------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence                    679999999999999999999999999999999999998888887654   4899999999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=1.2e-29  Score=249.52  Aligned_cols=180  Identities=14%  Similarity=0.144  Sum_probs=139.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|++ ..        +++|+||+|++||+++|+        |||  ||  |+++       +    +|+.
T Consensus       259 ~~l~~~~l~~~~~~-~~--------il~~vsl~i~~Ge~~~i~--------G~NGsGKSTLl~~-------l----~G~~  310 (490)
T PRK10938        259 PRIVLNNGVVSYND-RP--------ILHNLSWQVNPGEHWQIV--------GPNGAGKSTLLSL-------I----TGDH  310 (490)
T ss_pred             ceEEEeceEEEECC-ee--------EEeeceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence            46999999999953 33        899999999999999999        999  99  9999       8    8887


Q ss_pred             cc-CCceeecc------------CCCcEEEEcCcCCCC-C--CCHHHHHccCCcch-hhhh--cCCCHHHHHHHHHHcCC
Q psy11400        155 PL-FGGTVTKP------------PRGKLFYVPQRPYMT-L--GTLRDQVIYPHTKE-DMIQ--KGITDADLTEYLQKVQL  215 (298)
Q Consensus       155 ~~-~~G~i~~~------------~r~~i~~v~Q~~~l~-~--~tv~eni~~~~~~~-~~~~--~~~~~~~i~~~l~~~~l  215 (298)
                      ++ ++|+|...            .+++|+|++|++.++ .  .++.+++.++.... ....  .....+++.++++.+++
T Consensus       311 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  390 (490)
T PRK10938        311 PQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI  390 (490)
T ss_pred             CcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC
Confidence            75 68887531            134699999998643 2  36777665432100 0000  00113457788999998


Q ss_pred             ch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC-cEEEEEecC
Q psy11400        216 GY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG-ITLFTVSHR  290 (298)
Q Consensus       216 ~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~-~TiIiitH~  290 (298)
                      .+ ..+++         +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++   .+ .|||+|||+
T Consensus       391 ~~~~~~~~---------~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd  461 (490)
T PRK10938        391 DKRTADAP---------FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH  461 (490)
T ss_pred             chhhccCc---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            75 55543         679999999999999999999999999999999999999999888765   24 579999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      ++.+.
T Consensus       462 ~~~~~  466 (490)
T PRK10938        462 AEDAP  466 (490)
T ss_pred             hhhhh
Confidence            98775

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.96  E-value=1.8e-29  Score=209.90  Aligned_cols=127  Identities=25%  Similarity=0.265  Sum_probs=116.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++++||++++||+++|+        |+|  ||  |+++       +    .|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------~l~~~~~~~~~Ge~~~i~--------G~nGsGKStLl~~-------l----~G~~~~   52 (144)
T cd03221           1 IELENLSKTYGG-KL--------LLKDISLTINPGDRIGLV--------GRNGAGKSTLLKL-------I----AGELEP   52 (144)
T ss_pred             CEEEEEEEEECC-ce--------EEEeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCCC
Confidence            468899999964 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS  236 (298)
                      ++|+|....+..++|+||                                                            ||
T Consensus        53 ~~G~i~~~~~~~i~~~~~------------------------------------------------------------lS   72 (144)
T cd03221          53 DEGIVTWGSTVKIGYFEQ------------------------------------------------------------LS   72 (144)
T ss_pred             CceEEEECCeEEEEEEcc------------------------------------------------------------CC
Confidence            999998766567888888                                                            89


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      +||+||++|||||+.+|+++||||||++||+.+...+.+.+++.+.|+|++||+++.+.
T Consensus        73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~  131 (144)
T cd03221          73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD  131 (144)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence            99999999999999999999999999999999999999999888899999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.96  E-value=1.4e-29  Score=256.80  Aligned_cols=182  Identities=21%  Similarity=0.200  Sum_probs=147.7

Q ss_pred             cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +++++|+++.|+.+.  .+       +++|+||++++||+++|+        |+|  ||  |+++       +    +|+
T Consensus         4 ~l~~~nl~~~y~~~~~~~~-------il~~vs~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~Gl   57 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVE-------VLKGISLDIYAGEMVAIV--------GASGSGKSTLMNI-------L----GCL   57 (648)
T ss_pred             EEEEeeEEEEeCCCCCCee-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence            689999999996421  22       899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch
Q psy11400        154 WPLFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY  217 (298)
Q Consensus       154 ~~~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~  217 (298)
                      ++|++|++...               .++.++|+||++.+++ .|+.||+.++...... .....++++.++++.+++.+
T Consensus        58 ~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~lgl~~  136 (648)
T PRK10535         58 DKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL-ERKQRLLRAQELLQRLGLED  136 (648)
T ss_pred             CCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCChh
Confidence            99999987421               1357999999998875 5999999864211000 00112345778889999877


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      ..+++         +.+||+||+||++|||||+++|+++||||||++||+.+.+.+.+++++   .++|+|++||+++.+
T Consensus       137 ~~~~~---------~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~  207 (648)
T PRK10535        137 RVEYQ---------PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA  207 (648)
T ss_pred             hhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence            66553         679999999999999999999999999999999999999999888764   479999999999877


Q ss_pred             hhc
Q psy11400        295 THH  297 (298)
Q Consensus       295 ~~~  297 (298)
                      ...
T Consensus       208 ~~~  210 (648)
T PRK10535        208 AQA  210 (648)
T ss_pred             HhC
Confidence            543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-29  Score=246.20  Aligned_cols=180  Identities=16%  Similarity=0.124  Sum_probs=139.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|++|.|+.+...      .+|+|+||+|++|++++|+        |+|  ||  |+++       +    +|+.
T Consensus        20 ~mL~lknL~~~~~~~~~~------~IL~nVSfsI~~GEivgIi--------GpNGSGKSTLLki-------L----aGLl   74 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEYH------YALNNISFEVPEGEIVGII--------GLNGSGKSTLSNL-------I----AGVT   74 (549)
T ss_pred             ceeEEEEEEEecCCCccc------eEEeeeEEEEeCCCEEEEE--------cCCCCCHHHHHHH-------H----hCCC
Confidence            468999999999754321      1899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+|......  .++++.+.++ ..|++||+.+....... ......+.+.++++.+++.++.+++         +.
T Consensus        75 ~P~sGeI~I~G~~--~~i~~~~~l~~~lTV~EnL~l~~~~~~~-~~~e~~e~i~elLe~lgL~~~ld~~---------~~  142 (549)
T PRK13545         75 MPNKGTVDIKGSA--ALIAISSGLNGQLTGIENIELKGLMMGL-TKEKIKEIIPEIIEFADIGKFIYQP---------VK  142 (549)
T ss_pred             CCCceEEEECCEe--eeEEeccccCCCCcHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHcCChhHhhCC---------cc
Confidence            9999998754321  2333444443 46999999764211000 0001123456788888887766553         67


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +||||||||++|||||+.+|++|||||||++||+.+...+.+.+++   .|+|+|++||+++.+.
T Consensus       143 ~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~  207 (549)
T PRK13545        143 TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK  207 (549)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            9999999999999999999999999999999999999988888754   4899999999998764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=2e-29  Score=213.77  Aligned_cols=139  Identities=22%  Similarity=0.224  Sum_probs=108.2

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|+++.|++ ..        +++|+||++++||+++|+        |+|  ||  |+++       +    +|+++|
T Consensus         1 l~~~~l~~~~~~-~~--------vl~~i~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------i----~G~~~~   52 (163)
T cd03216           1 LELRGITKRFGG-VK--------ALDGVSLSVRRGEVHALL--------GENGAGKSTLMKI-------L----SGLYKP   52 (163)
T ss_pred             CEEEEEEEEECC-eE--------EEeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCC
Confidence            468999999963 33        899999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS  236 (298)
                      ++|+|..... .+.   .                          .+..   +... -.+.              ...+||
T Consensus        53 ~~G~v~~~g~-~~~---~--------------------------~~~~---~~~~-~~i~--------------~~~qLS   84 (163)
T cd03216          53 DSGEILVDGK-EVS---F--------------------------ASPR---DARR-AGIA--------------MVYQLS   84 (163)
T ss_pred             CCeEEEECCE-ECC---c--------------------------CCHH---HHHh-cCeE--------------EEEecC
Confidence            9998754221 000   0                          0000   0000 0000              012399


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ||||||++||||++.+|+++||||||++||+.+.+.+.+.+++   .+.|+|++||+++.+.
T Consensus        85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~  146 (163)
T cd03216          85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF  146 (163)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            9999999999999999999999999999999999999988765   3789999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=1.5e-29  Score=276.90  Aligned_cols=182  Identities=17%  Similarity=0.130  Sum_probs=148.5

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +.+++++|+++.|+++...       +++|+||+|++||+++|+        |+|  ||  |+++       +    .|+
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~-------aL~~ISf~I~~GEi~gLL--------G~NGAGKTTLlkm-------L----~Gl 1988 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSP-------AVDRLCVGVRPGECFGLL--------GVNGAGKTTTFKM-------L----TGD 1988 (2272)
T ss_pred             CceEEEEEEEEEECCCCce-------EEEeeEEEEcCCcEEEEE--------CCCCCcHHHHHHH-------H----hCC
Confidence            3579999999999643222       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        154 WPLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       154 ~~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      .+|++|+|...          .+++|||+||++.++. .|++||+.+....... .....++.+.++++.+++.+..+++
T Consensus      1989 l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~-~~~~~~~~v~~lLe~lgL~~~~dk~ 2067 (2272)
T TIGR01257      1989 TTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV-PAEEIEKVANWSIQSLGLSLYADRL 2067 (2272)
T ss_pred             CCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHHHhcCC
Confidence            99999998531          2457999999987764 6999999763211100 0001124566789999998776653


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               +.+|||||||||+||+||+.+|++++|||||+|||+..++.+++.+++   .|+|||++||+++.+.
T Consensus      2068 ---------~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257      2068 ---------AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred             ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence                     679999999999999999999999999999999999999999987764   4899999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.5e-29  Score=248.94  Aligned_cols=179  Identities=16%  Similarity=0.131  Sum_probs=136.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|+++|+++.+   ..        +++|+||+|++||+++|+        |+|  ||  |+++       +    .|+.
T Consensus       249 ~~i~~~~l~~~~---~~--------~l~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~  298 (491)
T PRK10982        249 VILEVRNLTSLR---QP--------SIRDVSFDLHKGEILGIA--------GLVGAKRTDIVET-------L----FGIR  298 (491)
T ss_pred             cEEEEeCccccc---Cc--------ccceeeEEEeCCcEEEEe--------cCCCCCHHHHHHH-------H----cCCC
Confidence            368999999874   23        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccC------------CCcEEEEcCcCC---CC-CCCHHHHHccCCcc-----hhhhhcCCCHHHHHHHHHHc
Q psy11400        155 PLFGGTVTKPP------------RGKLFYVPQRPY---MT-LGTLRDQVIYPHTK-----EDMIQKGITDADLTEYLQKV  213 (298)
Q Consensus       155 ~~~~G~i~~~~------------r~~i~~v~Q~~~---l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~i~~~l~~~  213 (298)
                      +|++|+|....            ++.++|+||++.   ++ ..|+.+|+.+....     ..........+.+.++++.+
T Consensus       299 ~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  378 (491)
T PRK10982        299 EKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM  378 (491)
T ss_pred             cCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence            99999986321            234999999863   34 35777774332100     00000001124566778888


Q ss_pred             CCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEec
Q psy11400        214 QLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSH  289 (298)
Q Consensus       214 ~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH  289 (298)
                      ++. +..++         ++.+|||||||||+||||++.+|++|||||||+|||+.+...+++++++   .+.|||++||
T Consensus       379 ~l~~~~~~~---------~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsH  449 (491)
T PRK10982        379 RVKTPGHRT---------QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISS  449 (491)
T ss_pred             CccCCCccc---------ccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECC
Confidence            774 23333         4789999999999999999999999999999999999999999887743   5899999999


Q ss_pred             Ccchhhh
Q psy11400        290 RKSLWTH  296 (298)
Q Consensus       290 ~l~~~~~  296 (298)
                      +++.+..
T Consensus       450 d~~~~~~  456 (491)
T PRK10982        450 EMPELLG  456 (491)
T ss_pred             ChHHHHh
Confidence            9987753

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=2.2e-29  Score=249.06  Aligned_cols=176  Identities=22%  Similarity=0.249  Sum_probs=137.3

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|++.      .        +++|+||+|++|++++|+        |||  ||  |+++       +    .|+.
T Consensus       267 ~~l~~~~l~~------~--------~l~~isl~i~~Ge~~~l~--------G~NGsGKSTLl~~-------i----~Gl~  313 (510)
T PRK15439        267 PVLTVEDLTG------E--------GFRNISLEVRAGEILGLA--------GVVGAGRTELAET-------L----YGLR  313 (510)
T ss_pred             ceEEEeCCCC------C--------CccceeEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence            3688888872      1        689999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccC------------CCcEEEEcCcC---CCC-CCCHHHHHccCCcc-hhh-hhcCCCHHHHHHHHHHcCCc
Q psy11400        155 PLFGGTVTKPP------------RGKLFYVPQRP---YMT-LGTLRDQVIYPHTK-EDM-IQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~~~~G~i~~~~------------r~~i~~v~Q~~---~l~-~~tv~eni~~~~~~-~~~-~~~~~~~~~i~~~l~~~~l~  216 (298)
                      +|++|+|....            +.+|+|+||++   .++ ..|+.+|+...... ... .......+.+.++++.+++.
T Consensus       314 ~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  393 (510)
T PRK15439        314 PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK  393 (510)
T ss_pred             CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence            99999985321            24699999985   244 45999998532100 000 00011124567888888885


Q ss_pred             -hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        217 -YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       217 -~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                       +..++         ++.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++   .|.|||+|||+++
T Consensus       394 ~~~~~~---------~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~  464 (510)
T PRK15439        394 FNHAEQ---------AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE  464 (510)
T ss_pred             CCCccC---------ccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence             44444         3679999999999999999999999999999999999999998888765   4899999999998


Q ss_pred             hhhh
Q psy11400        293 LWTH  296 (298)
Q Consensus       293 ~~~~  296 (298)
                      .+..
T Consensus       465 ~i~~  468 (510)
T PRK15439        465 EIEQ  468 (510)
T ss_pred             HHHH
Confidence            7753

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.96  E-value=2e-29  Score=228.62  Aligned_cols=168  Identities=22%  Similarity=0.196  Sum_probs=133.9

Q ss_pred             eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400         85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT  160 (298)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~  160 (298)
                      ||+++|+....        +++|+|+ +++|++++|+        |||  ||  |+++       +    +|+++|++|+
T Consensus         5 ~~~~~y~~~~~--------~l~~i~~-i~~Ge~~~Iv--------G~nGsGKSTLlk~-------l----~Gl~~p~~G~   56 (255)
T cd03236           5 EPVHRYGPNSF--------KLHRLPV-PREGQVLGLV--------GPNGIGKSTALKI-------L----AGKLKPNLGK   56 (255)
T ss_pred             CcceeecCcch--------hhhcCCC-CCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCcCCCCce
Confidence            68888964434        8999995 9999999999        999  99  9999       8    9999999999


Q ss_pred             ee-----------cc-----------CC--CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        161 VT-----------KP-----------PR--GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       161 i~-----------~~-----------~r--~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      |.           ..           .+  ..++|++|.+.++..++.+++.+...      .....+.+.++++.+++.
T Consensus        57 I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~  130 (255)
T cd03236          57 FDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLK------KKDERGKLDELVDQLELR  130 (255)
T ss_pred             EeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhc------hhHHHHHHHHHHHHcCCc
Confidence            84           10           01  13789999877665566666654321      111235678889999987


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      +..++         .+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++   .++|+|++||+++.
T Consensus       131 ~~~~~---------~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~  201 (255)
T cd03236         131 HVLDR---------NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV  201 (255)
T ss_pred             hhhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            65544         2678999999999999999999999999999999999998888877764   37999999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       202 ~~  203 (255)
T cd03236         202 LD  203 (255)
T ss_pred             HH
Confidence            65

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=2.4e-29  Score=225.37  Aligned_cols=163  Identities=23%  Similarity=0.291  Sum_probs=131.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCC-cccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSR-WGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~-~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .++++|+++.|+.+.. ++.. ..++++||||+|++||+++||        |+|  ||  +-|+       +    .|+.
T Consensus         4 ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glV--------GESG~GKSTlgr~-------i----~~L~   63 (268)
T COG4608           4 LLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLV--------GESGCGKSTLGRL-------I----LGLE   63 (268)
T ss_pred             eEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEE--------ecCCCCHHHHHHH-------H----HcCc
Confidence            5889999999975421 1111 234999999999999999999        999  99  8888       7    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+|...... +.-+         +                .....+++.+.++.+|+.. ++.+         .++
T Consensus        64 ~pt~G~i~f~g~~-i~~~---------~----------------~~~~~~~v~elL~~Vgl~~~~~~r---------yPh  108 (268)
T COG4608          64 EPTSGEILFEGKD-ITKL---------S----------------KEERRERVLELLEKVGLPEEFLYR---------YPH  108 (268)
T ss_pred             CCCCceEEEcCcc-hhhc---------c----------------hhHHHHHHHHHHHHhCCCHHHhhc---------CCc
Confidence            9999998654322 0000         0                1123466889999999864 5555         478


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhhc
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~~  297 (298)
                      +|||||+||++|||||+.+|+++++|||||+||...+.++.+++++    .|.|.++||||++.+++.
T Consensus       109 elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i  176 (268)
T COG4608         109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI  176 (268)
T ss_pred             ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence            9999999999999999999999999999999999999998888764    599999999999999874

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=2.8e-29  Score=238.97  Aligned_cols=180  Identities=22%  Similarity=0.218  Sum_probs=148.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++++++.|| +-.        +.+||||+|++||+.||+        |.|  ||  |+++       |    .|+|+
T Consensus         4 ~l~~~~itK~f~-~~~--------And~V~l~v~~GeIHaLL--------GENGAGKSTLm~i-------L----~G~~~   55 (501)
T COG3845           4 ALEMRGITKRFP-GVV--------ANDDVSLSVKKGEIHALL--------GENGAGKSTLMKI-------L----FGLYQ   55 (501)
T ss_pred             eEEEeccEEEcC-CEE--------ecCceeeeecCCcEEEEe--------ccCCCCHHHHHHH-------H----hCccc
Confidence            588999999998 334        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...            .+..||+|+|++.+++ .|+.|||..+.....  ........+++.++.+.+|+.--.+
T Consensus        56 P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~  135 (501)
T COG3845          56 PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD  135 (501)
T ss_pred             CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc
Confidence            999998532            2457999999998864 699999998764211  1111123467888888888853222


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~  296 (298)
                      .         ...+||-||||||.|.+||+++|++||||||||-|-|...+.+++.++   +.|+|||+|||++..++.
T Consensus       136 ~---------~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~  205 (501)
T COG3845         136 A---------KVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA  205 (501)
T ss_pred             c---------eeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence            2         367999999999999999999999999999999999998888877665   469999999999998775

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.3e-29  Score=226.46  Aligned_cols=156  Identities=24%  Similarity=0.304  Sum_probs=135.3

Q ss_pred             eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---------------cC
Q psy11400        105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---------------PP  165 (298)
Q Consensus       105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---------------~~  165 (298)
                      --+++|..+.-.++||.        |+|  ||  |+++       +    +|+..|++|.|..               +.
T Consensus        14 ~l~a~~~~p~~GvTAlF--------G~SGsGKTslin~-------I----aGL~rPdeG~I~lngr~L~Ds~k~i~lp~~   74 (352)
T COG4148          14 ALDANFTLPARGITALF--------GPSGSGKTSLINM-------I----AGLTRPDEGRIELNGRVLVDAEKGIFLPPE   74 (352)
T ss_pred             EEEEeccCCCCceEEEe--------cCCCCChhhHHHH-------H----hccCCccccEEEECCEEeecccCCcccChh
Confidence            34789999888999999        999  99  9999       8    9999999999852               12


Q ss_pred             CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400        166 RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA  244 (298)
Q Consensus       166 r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla  244 (298)
                      +++|||||||..+|+ .||+.|+.|+..       .....+.++++..+|+++++++.         +.+|||||||||+
T Consensus        75 ~RriGYVFQDARLFpH~tVrgNL~YG~~-------~~~~~~fd~iv~lLGI~hLL~R~---------P~~LSGGEkQRVA  138 (352)
T COG4148          75 KRRIGYVFQDARLFPHYTVRGNLRYGMW-------KSMRAQFDQLVALLGIEHLLDRY---------PGTLSGGEKQRVA  138 (352)
T ss_pred             hheeeeEeeccccccceEEecchhhhhc-------ccchHhHHHHHHHhCcHHHHhhC---------CCccCcchhhHHH
Confidence            678999999998875 799999999863       23456788899999999999884         7899999999999


Q ss_pred             HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      |+|||+.+|++|+||||.|+||..-+.+++.++++    .++.|+.|||.++.+.
T Consensus       139 IGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~  193 (352)
T COG4148         139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL  193 (352)
T ss_pred             HHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence            99999999999999999999999888888776653    5899999999987654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.96  E-value=6.1e-29  Score=244.64  Aligned_cols=178  Identities=21%  Similarity=0.216  Sum_probs=142.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|.++|++++|+ ++.        +++|+||++.+|++++||        |+|  ||  |+++       |    +|...
T Consensus         3 ~i~~~~ls~~~g-~~~--------l~~~~~l~~~~G~riGLv--------G~NGaGKSTLLki-------l----aG~~~   54 (530)
T COG0488           3 MITLENLSLAYG-DRP--------LLENVSLTLNPGERIGLV--------GRNGAGKSTLLKI-------L----AGELE   54 (530)
T ss_pred             eEEEeeeEEeeC-Cce--------eecCCcceeCCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCc
Confidence            589999999994 444        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhh-------c-C---------------------CCHHH
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQ-------K-G---------------------ITDAD  205 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~-------~-~---------------------~~~~~  205 (298)
                      |++|+|..+..-+++|++|++.+.. .|+.+.+..+........       . .                     ..+.+
T Consensus        55 ~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~  134 (530)
T COG0488          55 PDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR  134 (530)
T ss_pred             CCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence            9999998877678999999998875 499999876642110000       0 0                     00123


Q ss_pred             HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEE
Q psy11400        206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF  285 (298)
Q Consensus       206 i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiI  285 (298)
                      +..++..+++...          .....+||||||.||+||+||+.+|++|+|||||++||.++..++-+++++...|+|
T Consensus       135 ~~~~L~gLg~~~~----------~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtvi  204 (530)
T COG0488         135 AEEALLGLGFPDE----------DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVI  204 (530)
T ss_pred             HHHHHhcCCCCcc----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEE
Confidence            3344444444322          224689999999999999999999999999999999999999999999987644999


Q ss_pred             EEecCcchhh
Q psy11400        286 TVSHRKSLWT  295 (298)
Q Consensus       286 iitH~l~~~~  295 (298)
                      +||||..+..
T Consensus       205 iVSHDR~FLd  214 (530)
T COG0488         205 VVSHDRYFLD  214 (530)
T ss_pred             EEeCCHHHHH
Confidence            9999987654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.2e-29  Score=213.72  Aligned_cols=181  Identities=23%  Similarity=0.222  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+.+|+|+... ++.        +++++||++++||+++|+        |||  ||  |+|.       |    .|-..
T Consensus         1 mi~a~nls~~~~-Gr~--------ll~~vsl~~~pGev~ail--------GPNGAGKSTlLk~-------L----sGel~   52 (259)
T COG4559           1 MIRAENLSYSLA-GRR--------LLDGVSLDLRPGEVLAIL--------GPNGAGKSTLLKA-------L----SGELS   52 (259)
T ss_pred             CeeeeeeEEEee-cce--------eccCcceeccCCcEEEEE--------CCCCccHHHHHHH-------h----hCccC
Confidence            478899999874 444        899999999999999999        999  99  9999       8    88889


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCH-HHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITD-ADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~-~~i~~~l~~~~l~~~~~~~  222 (298)
                      |++|++...           ..++-+.+||+..+ |+.|++|-+.++..+.........+ .-+.+++..+++..+..+.
T Consensus        53 p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~  132 (259)
T COG4559          53 PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD  132 (259)
T ss_pred             CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc
Confidence            999998632           13567899999876 7889999999886543211111112 2367889999998887763


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhc------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYH------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                               ..+|||||||||.+||+|.+      ++++|+||||||+||..-+..++++.++   .|..|+.|-||+++
T Consensus       133 ---------y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL  203 (259)
T COG4559         133 ---------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL  203 (259)
T ss_pred             ---------hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence                     56899999999999999974      4569999999999999888888777665   48999999999998


Q ss_pred             hhhc
Q psy11400        294 WTHH  297 (298)
Q Consensus       294 ~~~~  297 (298)
                      ...|
T Consensus       204 AA~Y  207 (259)
T COG4559         204 AAQY  207 (259)
T ss_pred             HHHh
Confidence            7654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.96  E-value=8e-29  Score=230.67  Aligned_cols=190  Identities=19%  Similarity=0.247  Sum_probs=138.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc------eeecCccCcccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK------LFYVPQRPYMTLGTLR  150 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK------L~~~~~~~~~~l~~~~  150 (298)
                      ..+.++|+++.|....     .+..+++++||+|++||.+|+|        |.|  ||      +++++..+.       
T Consensus         5 ~lL~v~nLsV~f~~~~-----~~~~aVk~isf~i~~GEtlAlV--------GESGSGKSvTa~sim~LLp~~~-------   64 (534)
T COG4172           5 PLLSIRNLSVAFHQEG-----GTVEAVKGISFDIEAGETLALV--------GESGSGKSVTALSILGLLPSPA-------   64 (534)
T ss_pred             cceeeeccEEEEecCC-----cceEeeccceeeecCCCEEEEE--------ecCCCCccHHHHHHHHhcCCCc-------
Confidence            3588999998884321     0113999999999999999999        999  99      344421110       


Q ss_pred             ccccccCCceeecc---------------CCCcEEEEcCcCCC--CC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400        151 DQLWPLFGGTVTKP---------------PRGKLFYVPQRPYM--TL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQK  212 (298)
Q Consensus       151 ~~l~~~~~G~i~~~---------------~r~~i~~v~Q~~~l--~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~  212 (298)
                       ..  .-+|+|...               ...+|+++||+|.-  -+ .|+..++.-+.............+++.++|+.
T Consensus        65 -~~--~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~  141 (534)
T COG4172          65 -AA--HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLEL  141 (534)
T ss_pred             -cc--CccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence             01  124554311               13479999999963  22 48877776443221111222345678899999


Q ss_pred             cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400        213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS  288 (298)
Q Consensus       213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit  288 (298)
                      +|+.+-..+.      ..++++|||||||||.||.||+.+|++||.||||.|||...+.+|++++++    .|+++++||
T Consensus       142 VgI~~p~~rl------~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT  215 (534)
T COG4172         142 VGIPEPEKRL------DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT  215 (534)
T ss_pred             cCCCchhhhh------hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe
Confidence            9997644332      236899999999999999999999999999999999999999999988875    599999999


Q ss_pred             cCcchhhhc
Q psy11400        289 HRKSLWTHH  297 (298)
Q Consensus       289 H~l~~~~~~  297 (298)
                      ||++.++.+
T Consensus       216 HDL~iVr~~  224 (534)
T COG4172         216 HDLGIVRKF  224 (534)
T ss_pred             ccHHHHHHh
Confidence            999998764

>PLN03211 ABC transporter G-25; Provisional

Probab=99.96  E-value=4.4e-29  Score=252.96  Aligned_cols=166  Identities=22%  Similarity=0.175  Sum_probs=131.5

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC--Cceeecc-------CCCcE
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF--GGTVTKP-------PRGKL  169 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~--~G~i~~~-------~r~~i  169 (298)
                      .+|+|+|+++++||+++|+        |||  ||  |+++       |    +|..+|.  +|+|...       .++++
T Consensus        82 ~iL~~vs~~i~~Ge~~aI~--------GpnGaGKSTLL~i-------L----aG~~~~~~~sG~I~inG~~~~~~~~~~i  142 (659)
T PLN03211         82 TILNGVTGMASPGEILAVL--------GPSGSGKSTLLNA-------L----AGRIQGNNFTGTILANNRKPTKQILKRT  142 (659)
T ss_pred             eeeeCCEEEEECCEEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCceeEEEEECCEECchhhccce
Confidence            3999999999999999999        999  99  9999       8    8888774  7887532       24569


Q ss_pred             EEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400        170 FYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA  244 (298)
Q Consensus       170 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla  244 (298)
                      +||+|++.++. .|++||+.+......  ....+    .+.++++++.+++.+..+..-|    ......||||||||++
T Consensus       143 ~yv~Q~~~l~~~lTV~E~l~~~a~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg----~~~~~~LSgGerqRv~  216 (659)
T PLN03211        143 GFVTQDDILYPHLTVRETLVFCSLLRL--PKSLTKQEKILVAESVISELGLTKCENTIIG----NSFIRGISGGERKRVS  216 (659)
T ss_pred             EEECcccccCCcCCHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHHHcCChhhcCceeC----CCCCCCcChhhhhHHH
Confidence            99999998875 699999987431100  00111    2446788899998764432100    1135789999999999


Q ss_pred             HHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        245 MARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       245 iARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      |||+|+.+|++++|||||+|||+.+...+.+.+++   .|+|||+++|+++.
T Consensus       217 ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~  268 (659)
T PLN03211        217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS  268 (659)
T ss_pred             HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            99999999999999999999999999999888765   48999999999973

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.1e-29  Score=219.50  Aligned_cols=180  Identities=23%  Similarity=0.238  Sum_probs=143.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|+++||++.|. ++.        +|+|+|++|++||.++|+        |||  ||  |+++       +    .+.+
T Consensus        30 ~li~l~~v~v~r~-gk~--------iL~~isW~V~~ge~W~I~--------G~NGsGKTTLL~l-------l----~~~~   81 (257)
T COG1119          30 PLIELKNVSVRRN-GKK--------ILGDLSWQVNPGEHWAIV--------GPNGAGKTTLLSL-------L----TGEH   81 (257)
T ss_pred             ceEEecceEEEEC-CEe--------eccccceeecCCCcEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence            4699999999995 444        999999999999999999        999  99  9999       8    8888


Q ss_pred             ccCCceeec------------cCCCcEEEEcCcC---CCCCCCHHHHHccCCcchhhhhc-CCC---HHHHHHHHHHcCC
Q psy11400        155 PLFGGTVTK------------PPRGKLFYVPQRP---YMTLGTLRDQVIYPHTKEDMIQK-GIT---DADLTEYLQKVQL  215 (298)
Q Consensus       155 ~~~~G~i~~------------~~r~~i~~v~Q~~---~l~~~tv~eni~~~~~~~~~~~~-~~~---~~~i~~~l~~~~l  215 (298)
                      +|.+|.+..            ..|++||+|.-.-   +....+++|-++-+......... ..+   .+++..+++.+++
T Consensus        82 ~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~  161 (257)
T COG1119          82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA  161 (257)
T ss_pred             CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcch
Confidence            888887642            3478899997432   33456788877644321111111 223   3467788999999


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-----CcEEEEEecC
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-----GITLFTVSHR  290 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-----~~TiIiitH~  290 (298)
                      .++.+++         ..+||-|||||+-|||||+++|++|||||||+|||...++.+.+.+.+.     +.++|+|||.
T Consensus       162 ~~la~r~---------~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh  232 (257)
T COG1119         162 KHLADRP---------FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH  232 (257)
T ss_pred             hhhccCc---------hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence            8887775         5799999999999999999999999999999999999999888887762     6789999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      .+.+.
T Consensus       233 ~eEi~  237 (257)
T COG1119         233 AEEIP  237 (257)
T ss_pred             hhhcc
Confidence            87653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=3e-28  Score=246.63  Aligned_cols=177  Identities=19%  Similarity=0.188  Sum_probs=138.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~i~~ls~~~~~-~~--------il~~is~~i~~Ge~v~Lv--------G~NGsGKSTLLri-------i----aG~~~   54 (635)
T PRK11147          3 LISIHGAWLSFSD-AP--------LLDNAELHIEDNERVCLV--------GRNGAGKSTLMKI-------L----NGEVL   54 (635)
T ss_pred             EEEEeeEEEEeCC-ce--------eEeCcEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCCC
Confidence            5899999999963 34        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCc--------------------chhh----------hh---cCC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHT--------------------KEDM----------IQ---KGI  201 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~--------------------~~~~----------~~---~~~  201 (298)
                      |++|+|.......++|++|.+.. ..+++.+++..+..                    ..+.          ..   ...
T Consensus        55 p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  134 (635)
T PRK11147         55 LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ  134 (635)
T ss_pred             CCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCccc
Confidence            99999986544458999998643 23566665431110                    0000          00   001


Q ss_pred             CHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcC
Q psy11400        202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVG  281 (298)
Q Consensus       202 ~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~  281 (298)
                      ...++.++++.+++..  ++         .+.+|||||||||+|||||+.+|++|||||||++||+.+..++.+++++.+
T Consensus       135 ~~~~~~~~l~~lgl~~--~~---------~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~  203 (635)
T PRK11147        135 LENRINEVLAQLGLDP--DA---------ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ  203 (635)
T ss_pred             HHHHHHHHHHhCCCCC--CC---------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC
Confidence            1345566677766641  22         367999999999999999999999999999999999999999999999877


Q ss_pred             cEEEEEecCcchhh
Q psy11400        282 ITLFTVSHRKSLWT  295 (298)
Q Consensus       282 ~TiIiitH~l~~~~  295 (298)
                      .|||+|||+...+.
T Consensus       204 ~tvlivsHd~~~l~  217 (635)
T PRK11147        204 GSIIFISHDRSFIR  217 (635)
T ss_pred             CEEEEEeCCHHHHH
Confidence            89999999998764

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=3.7e-28  Score=199.62  Aligned_cols=177  Identities=17%  Similarity=0.186  Sum_probs=138.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      ++.++||+...+. .-        .|.|+||+|.+||++.++        |||  ||  |+..       +    .|...
T Consensus         2 ~l~l~nvsl~l~g-~c--------LLa~~n~Tia~GeivtlM--------GPSGcGKSTLls~-------~----~G~La   53 (213)
T COG4136           2 MLCLKNVSLRLPG-SC--------LLANVNFTIAKGEIVTLM--------GPSGCGKSTLLSW-------M----IGALA   53 (213)
T ss_pred             ceeeeeeeecCCC-ce--------EEEeeeEEecCCcEEEEE--------CCCCccHHHHHHH-------H----Hhhcc
Confidence            5789999988863 33        799999999999999999        999  99  6655       4    33322


Q ss_pred             c---CCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 L---FGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~---~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      +   .+|++..         ..++++|++||++++|+ .+|.+|+.|.....-.  .......+..++++.++..+..+.
T Consensus        54 ~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~K--G~aRr~~a~aAL~~~gL~g~f~~d  131 (213)
T COG4136          54 GQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLK--GNARRNAANAALERSGLDGAFHQD  131 (213)
T ss_pred             cCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcccc--cHHHHhhHHHHHHHhccchhhhcC
Confidence            1   3466532         23678999999999886 6999999986532211  122345577889999998877663


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH----HHHhcCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~----~l~~~~~TiIiitH~l~~~~  295 (298)
                               +.+||||||-||++-|+|+..|+.++||||+|.||...+.++.+    .++..|..+|.||||..-+.
T Consensus       132 ---------P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         132 ---------PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             ---------hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence                     67999999999999999999999999999999999976665554    45567999999999987543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.95  E-value=4.9e-28  Score=262.04  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=142.9

Q ss_pred             cEEEeeeeEecCC--CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRS--GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~--~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .++++||++.|+.  +..       .+|+|+|+++++|++++|+        |||  ||  |+++       |    +|+
T Consensus       759 ~l~~~nl~~~~~~~~~~~-------~iL~~vs~~i~~Ge~~aI~--------G~sGaGKSTLL~~-------L----ag~  812 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKR-------VILNNVDGWVKPGTLTALM--------GASGAGKTTLLNV-------L----AER  812 (1394)
T ss_pred             eEEEEeeEEEecCCCCCc-------EeeeCCEEEEECCEEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            4789999999852  122       2999999999999999999        999  99  9999       7    887


Q ss_pred             cc---cCCceeecc-------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchh--hhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        154 WP---LFGGTVTKP-------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       154 ~~---~~~G~i~~~-------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~--~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      .+   +++|+|...       .++.++||+|++.+ +..|++||+.+......  ........+.++++++.+++.+..+
T Consensus       813 ~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d  892 (1394)
T TIGR00956       813 VTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD  892 (1394)
T ss_pred             CCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC
Confidence            76   678987532       35679999999764 56799999987431110  0000011345788999999976654


Q ss_pred             hcCCcccccc-cCCCCChhHHHHHHHHHHHhcCCC-EEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        221 REKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQ-FAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       221 ~~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~-iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      ..      .+ .+..||||||||++|||||+.+|+ +|+|||||||||+.+...+.+.+++   .|+|||+++|+++..
T Consensus       893 ~~------v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~  965 (1394)
T TIGR00956       893 AV------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI  965 (1394)
T ss_pred             Ce------eCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Confidence            42      22 234899999999999999999997 9999999999999999999888765   489999999999853

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.95  E-value=7.7e-28  Score=212.54  Aligned_cols=157  Identities=14%  Similarity=-0.012  Sum_probs=120.4

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee-ccCCCcEEEEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT-KPPRGKLFYVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~-~~~r~~i~~v~Q~~~l  178 (298)
                      +++|+||+|++|++++|+        |||  ||  |+++       +    +|+++|++|++. ... . ...+.+++.+
T Consensus         2 vl~~vs~~i~~Ge~~~l~--------G~NGsGKSTLlk~-------i----~Gl~~~~sG~i~~~~~-~-~~~~~~~~~l   60 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGIL--------AAPGSGKTTLTRL-------L----CGLDAPDEGDFIGLRG-D-ALPLGANSFI   60 (213)
T ss_pred             eeeeeeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCccCCCCCEEEecC-c-eecccccccc
Confidence            799999999999999999        999  99  9999       8    999999999986 322 1 1234456666


Q ss_pred             CC-CCHHHHHccCCcchhhhhcCCCHHHHH-HHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400        179 TL-GTLRDQVIYPHTKEDMIQKGITDADLT-EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA  256 (298)
Q Consensus       179 ~~-~tv~eni~~~~~~~~~~~~~~~~~~i~-~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il  256 (298)
                      ++ .|++||+.+.....     .....++. .+.+..++....++         .+..||+|||||++|||||+.+|+++
T Consensus        61 ~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~---------~~~~lS~G~~qrv~la~al~~~p~ll  126 (213)
T PRK15177         61 LPGLTGEENARMMASLY-----GLDGDEFSHFCYQLTQLEQCYTD---------RVSEYSVTMKTHLAFAINLLLPCRLY  126 (213)
T ss_pred             CCcCcHHHHHHHHHHHc-----CCCHHHHHHHHHHHhChhHHhhc---------hHhhcCHHHHHHHHHHHHHhcCCCEE
Confidence            65 59999998743211     12222222 22344555544333         36789999999999999999999999


Q ss_pred             EEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        257 ILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       257 iLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      ||||||+++|+.+...+.+.+.+  .+.|+|++||+++.+.
T Consensus       127 llDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~  167 (213)
T PRK15177        127 IADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIK  167 (213)
T ss_pred             EECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHH
Confidence            99999999999999888886643  3679999999998764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.95  E-value=4.4e-28  Score=242.94  Aligned_cols=165  Identities=24%  Similarity=0.244  Sum_probs=134.2

Q ss_pred             eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400         85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT  160 (298)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~  160 (298)
                      ++++.|.....        +|++++ .+++|++++|+        |||  ||  |+++       |    +|+++|+.|+
T Consensus        78 ~~~~~yg~~~~--------~L~~l~-~i~~Gev~gLv--------G~NGaGKSTLlki-------L----~G~l~p~~G~  129 (590)
T PRK13409         78 EPVHRYGVNGF--------KLYGLP-IPKEGKVTGIL--------GPNGIGKTTAVKI-------L----SGELIPNLGD  129 (590)
T ss_pred             CceEEecCCce--------eEecCC-cCCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCccCCCcc
Confidence            47788853334        899999 99999999999        999  99  9999       8    9999999999


Q ss_pred             ee-----------cc-------------CCCcEEEEcC----cCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHH
Q psy11400        161 VT-----------KP-------------PRGKLFYVPQ----RPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK  212 (298)
Q Consensus       161 i~-----------~~-------------~r~~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~  212 (298)
                      |.           ..             .+.++++.+|    .|.++.+|+.|++.+.          ...+++.++++.
T Consensus       130 i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~  199 (590)
T PRK13409        130 YEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVER  199 (590)
T ss_pred             ccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHH
Confidence            85           10             1123555555    4445667999998641          123567889999


Q ss_pred             cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11400        213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHR  290 (298)
Q Consensus       213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~  290 (298)
                      +++.+..+++         +.+||||||||++||+||+.+|+++|||||||+||+.....+.+.+++.  ++|+|+|||+
T Consensus       200 l~l~~~~~~~---------~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd  270 (590)
T PRK13409        200 LGLENILDRD---------ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHD  270 (590)
T ss_pred             cCCchhhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            9997766553         6799999999999999999999999999999999999999998887764  8999999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      ++.+..
T Consensus       271 ~~~l~~  276 (590)
T PRK13409        271 LAVLDY  276 (590)
T ss_pred             HHHHHH
Confidence            987654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2e-28  Score=209.18  Aligned_cols=181  Identities=19%  Similarity=0.195  Sum_probs=148.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||++.|. .+.        +++++|++|++|.+++++        |||  ||  |+.+       .    +++.+
T Consensus         1 MI~i~nv~K~y~-~~~--------vl~~isl~i~~g~iTs~I--------GPNGAGKSTLLS~-------~----sRL~~   52 (252)
T COG4604           1 MITIENVSKSYG-TKV--------VLDDVSLDIPKGGITSII--------GPNGAGKSTLLSM-------M----SRLLK   52 (252)
T ss_pred             CeeehhhhHhhC-CEE--------eeccceeeecCCceeEEE--------CCCCccHHHHHHH-------H----HHhcc
Confidence            478999999995 344        999999999999999999        999  99  8888       7    88999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcC-CCHHHHHHHHHHcCCchhhhhc
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKG-ITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~-~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      .++|+|+..           ..++++.+-|+..+- ..||+|-+.|+..++...+.. .+...+.++++.++|.++.++.
T Consensus        53 ~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry  132 (252)
T COG4604          53 KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY  132 (252)
T ss_pred             ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh
Confidence            999998642           245688888988664 569999999987544222222 2345688999999998888773


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecCcchhhhc
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~l~~~~~~  297 (298)
                               ..+||||||||.-||..++++.++++||||.++||..-...+++.++    +.|+|+++|-||.+.+..|
T Consensus       133 ---------Ld~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y  202 (252)
T COG4604         133 ---------LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY  202 (252)
T ss_pred             ---------HHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence                     56899999999999999999999999999999999876666666554    4699999999999988765

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.95  E-value=7.4e-28  Score=225.52  Aligned_cols=145  Identities=26%  Similarity=0.311  Sum_probs=117.2

Q ss_pred             CCC--cc--eeecCccCccccccccccccccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchh
Q psy11400        130 PPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED  195 (298)
Q Consensus       130 G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~  195 (298)
                      |||  ||  |+++       +    +|+++|++|+|...         .+++++|+||++.+|. .|+++|+.++.....
T Consensus         3 G~nGsGKSTLl~~-------i----aGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~   71 (325)
T TIGR01187         3 GPSGCGKTTLLRL-------L----AGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK   71 (325)
T ss_pred             CCCCCCHHHHHHH-------H----HCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC
Confidence            999  99  9999       8    99999999998531         2457999999998775 599999988642110


Q ss_pred             hhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH
Q psy11400        196 MIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE  275 (298)
Q Consensus       196 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~  275 (298)
                      . ......+++.++++.+++.++.++.         +.+||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus        72 ~-~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~  141 (325)
T TIGR01187        72 V-PRAEIKPRVLEALRLVQLEEFADRK---------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL  141 (325)
T ss_pred             C-CHHHHHHHHHHHHHHcCCcchhcCC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH
Confidence            0 0001134677889999998766653         67999999999999999999999999999999999999999888


Q ss_pred             HHHh----cCcEEEEEecCcchhh
Q psy11400        276 YCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       276 ~l~~----~~~TiIiitH~l~~~~  295 (298)
                      .+++    .++|+|+|||+++.+.
T Consensus       142 ~l~~l~~~~g~tiiivTHd~~e~~  165 (325)
T TIGR01187       142 ELKTIQEQLGITFVFVTHDQEEAM  165 (325)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHH
Confidence            7754    3899999999998654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.94  E-value=2e-27  Score=239.90  Aligned_cols=164  Identities=23%  Similarity=0.199  Sum_probs=130.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC---Cceeecc--------CCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF---GGTVTKP--------PRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~---~G~i~~~--------~r~~  168 (298)
                      +|+|+|+++++||.++|+        |||  ||  |+++       |    +|..++.   +|+|...        .++.
T Consensus        40 iL~~vs~~i~~Ge~~aI~--------G~sGsGKSTLL~~-------L----~g~~~~~~~~~G~i~~~g~~~~~~~~~~~  100 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVM--------GSSGAGKTTLMNA-------L----AFRSPKGVKGSGSVLLNGMPIDAKEMRAI  100 (617)
T ss_pred             cccCCEEEEeCCeEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCcceeEEEECCEECCHHHHhhh
Confidence            999999999999999999        999  99  9999       7    7777664   6877532        2457


Q ss_pred             EEEEcCcCCCCC-CCHHHHHccCCcchhh--hhcCCCHHHHHHHHHHcCCchhhhhcCCcccccc---cCCCCChhHHHH
Q psy11400        169 LFYVPQRPYMTL-GTLRDQVIYPHTKEDM--IQKGITDADLTEYLQKVQLGYILNREKGWDTVAD---WIDVLSGGEKQR  242 (298)
Q Consensus       169 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~---~~~~LSgGqkQR  242 (298)
                      ++||+|++.+++ .||+||+.|+......  .......++++++++.+++.+..+.      ..+   +...||||||||
T Consensus       101 i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t------~vg~~~~~~~LSgGqrkR  174 (617)
T TIGR00955       101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT------RIGVPGRVKGLSGGERKR  174 (617)
T ss_pred             ceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcC------ccCCCCCCCCcCcchhhH
Confidence            999999998774 6999999875421100  0001123467888999998765433      332   235799999999


Q ss_pred             HHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        243 VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       243 laiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                      ++|||+|+.+|++++|||||||||+.+...+.+.+++   .|+|+|+++|+++
T Consensus       175 vsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~  227 (617)
T TIGR00955       175 LAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS  227 (617)
T ss_pred             HHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            9999999999999999999999999999999888765   3899999999986

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=5.8e-27  Score=201.27  Aligned_cols=125  Identities=21%  Similarity=0.152  Sum_probs=107.8

Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      .|+++.|.+ ..        ++++ +|++++||+++|+        |||  ||  |+++       +    +|+++|++|
T Consensus         4 ~~l~~~~~~-~~--------~l~~-~~~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~p~~G   54 (177)
T cd03222           4 PDCVKRYGV-FF--------LLVE-LGVVKEGEVIGIV--------GPNGTGKTTAVKI-------L----AGQLIPNGD   54 (177)
T ss_pred             CCeEEEECC-EE--------EEcc-CcEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCCCCCc
Confidence            578888853 33        7888 4999999999999        999  99  9999       8    999999999


Q ss_pred             eeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400        160 TVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE  239 (298)
Q Consensus       160 ~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq  239 (298)
                      +|.... ..++|+||++.                                                         |||||
T Consensus        55 ~i~~~g-~~i~~~~q~~~---------------------------------------------------------LSgGq   76 (177)
T cd03222          55 NDEWDG-ITPVYKPQYID---------------------------------------------------------LSGGE   76 (177)
T ss_pred             EEEECC-EEEEEEcccCC---------------------------------------------------------CCHHH
Confidence            997543 34888887541                                                         89999


Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT  295 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~  295 (298)
                      |||++|||||+.+|++++|||||++||+.+.+.+.+.+++   . +.|+|++||+++.+.
T Consensus        77 ~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~  136 (177)
T cd03222          77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD  136 (177)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            9999999999999999999999999999999988887754   2 489999999998765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.94  E-value=7e-26  Score=223.03  Aligned_cols=175  Identities=22%  Similarity=0.274  Sum_probs=148.7

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +..++++|+++.|+++..        +++++||.|.+|++++|+        |||  ||  |+++       |    .|.
T Consensus       319 ~~vl~~~~~~~~y~~~~~--------l~~~~s~~i~~g~riaii--------G~NG~GKSTLlk~-------l----~g~  371 (530)
T COG0488         319 KLVLEFENVSKGYDGGRL--------LLKDLSFRIDRGDRIAIV--------GPNGAGKSTLLKL-------L----AGE  371 (530)
T ss_pred             CeeEEEeccccccCCCce--------eecCceEEecCCCEEEEE--------CCCCCCHHHHHHH-------H----hhh
Confidence            356899999999965544        899999999999999999        999  99  9999       7    888


Q ss_pred             cccCCceeeccCCCcEEEEcCcCC-C-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccc
Q psy11400        154 WPLFGGTVTKPPRGKLFYVPQRPY-M-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVAD  230 (298)
Q Consensus       154 ~~~~~G~i~~~~r~~i~~v~Q~~~-l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~  230 (298)
                      ..|.+|+|.....-++||.+|+.. + ...|+.|++.-..       ....+..+...|..+++.. ...+         
T Consensus       372 ~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~-------~~~~e~~~r~~L~~f~F~~~~~~~---------  435 (530)
T COG0488         372 LGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGF-------PDGDEQEVRAYLGRFGFTGEDQEK---------  435 (530)
T ss_pred             cccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhC-------ccccHHHHHHHHHHcCCChHHHhC---------
Confidence            888899998766678999999973 3 3458888886432       1222677899999999864 2223         


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      .+..||||||-|+.+|+.++.+|.+|||||||+.||.++.+.+.+.+.+..-|||+||||..++.
T Consensus       436 ~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~  500 (530)
T COG0488         436 PVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLD  500 (530)
T ss_pred             chhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            36799999999999999999999999999999999999999999999999889999999998765

>PLN03140 ABC transporter G family member; Provisional

Probab=99.94  E-value=8.8e-27  Score=252.28  Aligned_cols=189  Identities=17%  Similarity=0.122  Sum_probs=141.7

Q ss_pred             cEEEeeeeEecCCCCC--CCC--CCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc
Q psy11400         80 LRGRLGITLGLRSGGL--GFD--SRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD  151 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~--~~~--~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~  151 (298)
                      .+.++||++..+....  ..+  .....+|+|+|+++++|++++|+        |||  ||  |+++       |    +
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~--------G~sGaGKTTLL~~-------L----a  927 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALM--------GVSGAGKTTLMDV-------L----A  927 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEE--------CCCCCCHHHHHHH-------H----c
Confidence            5899999998742110  000  01124999999999999999999        999  99  9999       7    7


Q ss_pred             cccc--cCCceeecc--------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCc
Q psy11400        152 QLWP--LFGGTVTKP--------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLG  216 (298)
Q Consensus       152 ~l~~--~~~G~i~~~--------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~  216 (298)
                      |..+  +.+|+|...        .++.+|||+|++.++ ..|++||+.++.....  ....+    .+.++++++.++|.
T Consensus       928 G~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~--~~~~~~~~~~~~v~~vl~~lgL~ 1005 (1470)
T PLN03140        928 GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRL--PKEVSKEEKMMFVDEVMELVELD 1005 (1470)
T ss_pred             CCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHHHCCCh
Confidence            7654  257877532        235699999998765 4699999987531100  01111    23578899999998


Q ss_pred             hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       217 ~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      +..+..-|.    ..+..|||||||||+|||+|+.+|++|+|||||||||+.+...+.+.+++   .|+|||+++|+++.
T Consensus      1006 ~~~~~~vg~----~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140       1006 NLKDAIVGL----PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred             hHhCCccCC----CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence            765543211    01368999999999999999999999999999999999999999888765   48999999999984

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=5.2e-26  Score=191.13  Aligned_cols=126  Identities=27%  Similarity=0.379  Sum_probs=106.3

Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      ++|+++.|++ ..        +++++||++++|++++|+        |+|  ||  |+++       +    .|+++|++
T Consensus         2 ~~~~~~~~~~-~~--------~l~~~~~~i~~g~~~~i~--------G~nGsGKStll~~-------l----~g~~~~~~   53 (157)
T cd00267           2 IENLSFRYGG-RT--------ALDNVSLTLKAGEIVALV--------GPNGSGKSTLLRA-------I----AGLLKPTS   53 (157)
T ss_pred             eEEEEEEeCC-ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCc
Confidence            6789999964 33        899999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeeccCC-----------CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        159 GTVTKPPR-----------GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       159 G~i~~~~r-----------~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                      |++.....           +.++|+||                                                     
T Consensus        54 G~i~~~~~~~~~~~~~~~~~~i~~~~q-----------------------------------------------------   80 (157)
T cd00267          54 GEILIDGKDIAKLPLEELRRRIGYVPQ-----------------------------------------------------   80 (157)
T ss_pred             cEEEECCEEcccCCHHHHHhceEEEee-----------------------------------------------------
Confidence            98764321           11222222                                                     


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                             ||+||+||++||||++.+|++++|||||++||..+...+.+.+++   .++|+|++||+++.+..
T Consensus        81 -------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~  145 (157)
T cd00267          81 -------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL  145 (157)
T ss_pred             -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence                   999999999999999999999999999999999999998887764   25899999999987654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.93  E-value=4.9e-26  Score=195.39  Aligned_cols=129  Identities=24%  Similarity=0.350  Sum_probs=102.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------CCCcEEEEc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------PRGKLFYVP  173 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------~r~~i~~v~  173 (298)
                      +++|+||++++|++++|+        |||  ||  |+++       +    .    +++|++...      .+..++|++
T Consensus        10 ~l~~isl~i~~G~~~~l~--------G~nG~GKSTLl~~-------i----l----~~~G~v~~~~~~~~~~~~~~~~~~   66 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVT--------GVSGSGKSTLVNE-------G----L----YASGKARLISFLPKFSRNKLIFID   66 (176)
T ss_pred             eecceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----h----hcCCcEEECCcccccccccEEEEh
Confidence            899999999999999999        999  99  8887       4    2    246665421      112244443


Q ss_pred             CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400        174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR  252 (298)
Q Consensus       174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~  252 (298)
                      |                                .++++.+++.+. .++         ++.+||||||||++||||++.+
T Consensus        67 q--------------------------------~~~l~~~~L~~~~~~~---------~~~~LSgGq~qrl~laral~~~  105 (176)
T cd03238          67 Q--------------------------------LQFLIDVGLGYLTLGQ---------KLSTLSGGELQRVKLASELFSE  105 (176)
T ss_pred             H--------------------------------HHHHHHcCCCccccCC---------CcCcCCHHHHHHHHHHHHHhhC
Confidence            3                                345677777542 222         4679999999999999999999


Q ss_pred             --CCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        253 --PQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       253 --P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                        |+++||||||++||+...+.+.+.+++   .|+|||++||+++.+..
T Consensus       106 ~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~  154 (176)
T cd03238         106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS  154 (176)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence              999999999999999999998887765   48999999999987653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03073 ABC transporter F family; Provisional

Probab=99.93  E-value=1.9e-25  Score=227.98  Aligned_cols=176  Identities=17%  Similarity=0.165  Sum_probs=123.0

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|+++|+++.|+ +..        +|+|+||+|++|++++|+        |+|  ||  |+++       +    +|..
T Consensus       176 ~~I~i~nls~~y~-~~~--------ll~~isl~i~~Ge~~gLv--------G~NGsGKSTLLr~-------l----~g~~  227 (718)
T PLN03073        176 KDIHMENFSISVG-GRD--------LIVDASVTLAFGRHYGLV--------GRNGTGKTTFLRY-------M----AMHA  227 (718)
T ss_pred             eeEEEceEEEEeC-CCE--------EEECCEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCC
Confidence            4699999999995 334        899999999999999999        999  99  9999       7    5542


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCc-------------chh----------------hh--hcC---
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT-------------KED----------------MI--QKG---  200 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-------------~~~----------------~~--~~~---  200 (298)
                       + .|   .+....|+|++|++.....|+.+.+.-...             ...                ..  ...   
T Consensus       228 -~-~g---~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~  302 (718)
T PLN03073        228 -I-DG---IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVS  302 (718)
T ss_pred             -C-CC---CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHH
Confidence             1 12   122334778888753333344322110000             000                00  000   


Q ss_pred             ----------------CCHHHHHHHHHHcCCc-hhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400        201 ----------------ITDADLTEYLQKVQLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS  263 (298)
Q Consensus       201 ----------------~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs  263 (298)
                                      ..++++.+++..+++. +..++         .+.+||||||||++|||||+.+|++|||||||+
T Consensus       303 ~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~---------~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~  373 (718)
T PLN03073        303 QRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK---------ATKTFSGGWRMRIALARALFIEPDLLLLDEPTN  373 (718)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC---------chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence                            0112333444444443 12222         367999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        264 AVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       264 ~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +||+....++.+++++.+.|+|+|||+...+..
T Consensus       374 ~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~  406 (718)
T PLN03073        374 HLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT  406 (718)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            999999999999999989999999999987653

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.1e-25  Score=189.32  Aligned_cols=175  Identities=25%  Similarity=0.362  Sum_probs=136.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+++.++|..|... .        -.+|+||.+.|||.++|+        |+|  ||  |+++       +    .+-.+
T Consensus         6 LL~V~~lsk~Yg~~-~--------gc~~vsF~l~PGeVLgiV--------GESGSGKtTLL~~-------i----s~rl~   57 (258)
T COG4107           6 LLSVSGLSKLYGPG-K--------GCRDVSFDLYPGEVLGIV--------GESGSGKTTLLKC-------I----SGRLT   57 (258)
T ss_pred             ceeehhhhhhhCCC-c--------CccccceeecCCcEEEEE--------ecCCCcHHhHHHH-------H----hcccC
Confidence            58899999999533 3        689999999999999999        999  99  8888       7    77788


Q ss_pred             cCCceeecc--------------------CCCcEEEEcCcCC--C----CC-CCHHHHHc-cCCcchhhhhcCCCHHHHH
Q psy11400        156 LFGGTVTKP--------------------PRGKLFYVPQRPY--M----TL-GTLRDQVI-YPHTKEDMIQKGITDADLT  207 (298)
Q Consensus       156 ~~~G~i~~~--------------------~r~~i~~v~Q~~~--l----~~-~tv~eni~-~~~~~~~~~~~~~~~~~i~  207 (298)
                      |+.|++...                    .|...|||.|+|.  +    .. +.+-|-+. .+...     .+.-.+...
T Consensus        58 p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-----YG~iR~~a~  132 (258)
T COG4107          58 PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-----YGNIRAEAQ  132 (258)
T ss_pred             CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-----hhhHHHHHH
Confidence            999997521                    1446899999994  1    11 23333322 11111     122245677


Q ss_pred             HHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcE
Q psy11400        208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGIT  283 (298)
Q Consensus       208 ~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~T  283 (298)
                      ++++.+.++        .+..++.+.++|||||||+.|||-|+..|+++++||||.|||...+..+.++++    +.+.+
T Consensus       133 ~WL~~VEI~--------~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la  204 (258)
T COG4107         133 DWLEEVEID--------LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLA  204 (258)
T ss_pred             HHHHhcccC--------cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCce
Confidence            889988885        234455688999999999999999999999999999999999999999988776    46899


Q ss_pred             EEEEecCcchhh
Q psy11400        284 LFTVSHRKSLWT  295 (298)
Q Consensus       284 iIiitH~l~~~~  295 (298)
                      ++++||++..++
T Consensus       205 ~viVTHDl~Var  216 (258)
T COG4107         205 VVIVTHDLAVAR  216 (258)
T ss_pred             EEEEechhHHHH
Confidence            999999998765

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=4.6e-25  Score=188.35  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=143.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||+++|. +-.        +++|+||++.+||.-+|+        |||  ||  ++.+       +    .|--+
T Consensus         5 iL~~~~vsVsF~-GF~--------Aln~ls~~v~~Gelr~lI--------GpNGAGKTT~mD~-------I----tGKtr   56 (249)
T COG4674           5 ILYLDGVSVSFG-GFK--------ALNDLSFSVDPGELRVLI--------GPNGAGKTTLMDV-------I----TGKTR   56 (249)
T ss_pred             eEEEeceEEEEc-cee--------eeeeeEEEecCCeEEEEE--------CCCCCCceeeeee-------e----cccCC
Confidence            578999999994 323        999999999999999999        999  99  8888       7    88888


Q ss_pred             cCCceeecc-------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhh-------hcCCCHHHHHHHHHHcC
Q psy11400        156 LFGGTVTKP-------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMI-------QKGITDADLTEYLQKVQ  214 (298)
Q Consensus       156 ~~~G~i~~~-------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-------~~~~~~~~i~~~l~~~~  214 (298)
                      |+.|++...             .|..||-=||.|..|. .||+||+-.........       ......++++++|...+
T Consensus        57 p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~ig  136 (249)
T COG4674          57 PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIG  136 (249)
T ss_pred             CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcc
Confidence            999987531             2456899999998875 59999997643211100       11223457999999999


Q ss_pred             CchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy11400        215 LGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKS  292 (298)
Q Consensus       215 l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~  292 (298)
                      |.+..++.         ...||.||||++.|+..++++|++|+||||++|+..+.....-++++.  ..++|++|.||+.
T Consensus       137 L~~~~~~~---------A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~  207 (249)
T COG4674         137 LGDERDRL---------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMG  207 (249)
T ss_pred             cchhhhhh---------hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHH
Confidence            98777664         468999999999999999999999999999999965555555555554  3789999999999


Q ss_pred             hhhh
Q psy11400        293 LWTH  296 (298)
Q Consensus       293 ~~~~  296 (298)
                      .++.
T Consensus       208 Fvr~  211 (249)
T COG4674         208 FVRE  211 (249)
T ss_pred             HHHH
Confidence            8764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.5e-25  Score=188.03  Aligned_cols=159  Identities=24%  Similarity=0.255  Sum_probs=131.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC----------CCcE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP----------RGKL  169 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~----------r~~i  169 (298)
                      ++.++||++.+||.+-|.        |||  ||  |+|+       +    +|+..|.+|+|....          ++.+
T Consensus        17 lf~~L~f~l~~Ge~~~i~--------G~NG~GKTtLLRi-------l----aGLl~p~~G~v~~~~~~i~~~~~~~~~~l   77 (209)
T COG4133          17 LFSDLSFTLNAGEALQIT--------GPNGAGKTTLLRI-------L----AGLLRPDAGEVYWQGEPIQNVRESYHQAL   77 (209)
T ss_pred             eecceeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HcccCCCCCeEEecCCCCccchhhHHHHH
Confidence            899999999999999999        999  99  9999       8    999999999986321          1345


Q ss_pred             EEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400        170 FYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       170 ~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa  248 (298)
                      -|+--++-+ ...|++||+.|-....    ...+.+.+.++++.++|..+.+.|         ..+||-|||+||+|||.
T Consensus        78 ~yLGH~~giK~eLTa~ENL~F~~~~~----~~~~~~~i~~Al~~vgL~g~~dlp---------~~~LSAGQqRRvAlArL  144 (209)
T COG4133          78 LYLGHQPGIKTELTALENLHFWQRFH----GSGNAATIWEALAQVGLAGLEDLP---------VGQLSAGQQRRVALARL  144 (209)
T ss_pred             HHhhccccccchhhHHHHHHHHHHHh----CCCchhhHHHHHHHcCcccccccc---------hhhcchhHHHHHHHHHH
Confidence            566555545 4569999998743211    123567899999999998877765         67999999999999999


Q ss_pred             HhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        249 FYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      .+..++++||||||++||.+....+-.++..   .|-.||.+||...-+
T Consensus       145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence            9999999999999999999999888777654   477899999987543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.92  E-value=6.4e-25  Score=237.96  Aligned_cols=167  Identities=15%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc----ccCCceeecc----------
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW----PLFGGTVTKP----------  164 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~----~~~~G~i~~~----------  164 (298)
                      .+|+|+|+.+++||+++|+        |||  ||  |+++       |    +|..    +|.+|+|...          
T Consensus        75 ~iL~~vs~~i~~Ge~~aIl--------G~nGsGKSTLLk~-------L----aG~~~~~~~~~~G~I~~~G~~~~~~~~~  135 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVL--------GRPGSGCSTLLKT-------I----ASNTDGFHIGVEGVITYDGITPEEIKKH  135 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCCCceeEEEECCEehHHHHhh
Confidence            4999999999999999999        999  99  9999       7    6654    5688988531          


Q ss_pred             CCCcEEEEcCcCCCC-CCCHHHHHccCCcchh--hhhcCCCH----HH-HHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400        165 PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKED--MIQKGITD----AD-LTEYLQKVQLGYILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       165 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~--~~~~~~~~----~~-i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS  236 (298)
                      .++.++||+|++.++ ..|++|++.++.....  ........    ++ .+.+++.++|.+..+..-|    ......||
T Consensus       136 ~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg----~~~~~~LS  211 (1394)
T TIGR00956       136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG----NDFVRGVS  211 (1394)
T ss_pred             cCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC----CCcCCCCC
Confidence            245699999998765 4699999987532100  00001111    12 3457888999765543211    12457899


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS  292 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~  292 (298)
                      |||||||+||+||+.+|++++|||||+|||+.+...+.+.+++    .|+|+|+++|+++
T Consensus       212 GGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~  271 (1394)
T TIGR00956       212 GGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS  271 (1394)
T ss_pred             cccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence            9999999999999999999999999999999999988887764    3899999999974

>KOG0061|consensus

Probab=99.91  E-value=2.2e-24  Score=216.89  Aligned_cols=186  Identities=20%  Similarity=0.151  Sum_probs=142.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+.++|++...+....    ....+|+|||.++++||.+||+        |||  ||  |+++       +    +|-.+
T Consensus        25 ~~~~~~~~~~~~~~~~----~~k~iL~~vsg~~~~Gel~Aim--------G~SGsGKtTLL~~-------L----agr~~   81 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSK----KTKTILKGVSGTAKPGELLAIM--------GPSGSGKTTLLNA-------L----AGRLN   81 (613)
T ss_pred             eeEEEEEEEEecCCCC----ccceeeeCcEEEEecCeEEEEE--------CCCCCCHHHHHHH-------H----hcccc
Confidence            5789999988764420    1123999999999999999999        999  99  8888       6    55543


Q ss_pred             ---cCCceeecc--------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhh--hhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 ---LFGGTVTKP--------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDM--IQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ---~~~G~i~~~--------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                         ..+|+|...        .++..|||.|+..++ ..||+|++.|.....-.  ......+++++++++.+++.+..+.
T Consensus        82 ~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t  161 (613)
T KOG0061|consen   82 GGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADT  161 (613)
T ss_pred             CCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccc
Confidence               356777543        256799999998765 56999999875321100  0111235678999999999865544


Q ss_pred             cCCcccccc--cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        222 EKGWDTVAD--WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       222 ~~g~d~~~~--~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                            ..+  ....+|||||+||+||.-++++|.+|+|||||||||..+..++.+.+++   .|+|||++=|+++.-
T Consensus       162 ------~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~  233 (613)
T KOG0061|consen  162 ------LIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSE  233 (613)
T ss_pred             ------eecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHH
Confidence                  222  1257999999999999999999999999999999999988888877764   499999999999753

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.91  E-value=6.6e-24  Score=189.13  Aligned_cols=81  Identities=28%  Similarity=0.397  Sum_probs=68.1

Q ss_pred             HHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---c
Q psy11400        207 TEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---V  280 (298)
Q Consensus       207 ~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~  280 (298)
                      .+.++.+++.+. .++         .+.+||||||||++|||||+.+|  +++||||||++||+.+...+.+.+++   .
T Consensus       118 ~~~l~~~~l~~~~~~~---------~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~  188 (226)
T cd03270         118 LGFLVDVGLGYLTLSR---------SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL  188 (226)
T ss_pred             HHHHHHCCCCcccccC---------ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC
Confidence            567788887642 333         47899999999999999999998  59999999999999999988887754   4


Q ss_pred             CcEEEEEecCcchhhh
Q psy11400        281 GITLFTVSHRKSLWTH  296 (298)
Q Consensus       281 ~~TiIiitH~l~~~~~  296 (298)
                      |.|+|+|||+++.+..
T Consensus       189 g~tii~itH~~~~~~~  204 (226)
T cd03270         189 GNTVLVVEHDEDTIRA  204 (226)
T ss_pred             CCEEEEEEeCHHHHHh
Confidence            8999999999987653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.91  E-value=3e-24  Score=181.81  Aligned_cols=190  Identities=19%  Similarity=0.207  Sum_probs=140.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|....--++.....+++.+||++++|+.+|++        |.|  ||  |.++       +    +|+.+
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiI--------G~NGSGKSTLakM-------l----aGmi~   64 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAII--------GENGSGKSTLAKM-------L----AGMIE   64 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEE--------ccCCCcHhHHHHH-------H----hcccC
Confidence            356778877664221111222334899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCC-CC--CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhh
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYM-TL--GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILN  220 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~  220 (298)
                      |++|+|...           ..++|-++||+|.- ++  ..+-..+-.|.............+++.+-++.+|+-. ..+
T Consensus        65 PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan  144 (267)
T COG4167          65 PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN  144 (267)
T ss_pred             CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc
Confidence            999998532           24679999999963 32  2333333344322111112223467888899999842 222


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~~  296 (298)
                      -         ++..||.|||||||+||||+.+|+++|.||+.++||...+.++.++.    .+.|.+.|.|+.++..++|
T Consensus       145 ~---------~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKH  215 (267)
T COG4167         145 Y---------YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKH  215 (267)
T ss_pred             c---------chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhh
Confidence            1         46789999999999999999999999999999999999888877653    3469999999999999887


Q ss_pred             c
Q psy11400        297 H  297 (298)
Q Consensus       297 ~  297 (298)
                      .
T Consensus       216 i  216 (267)
T COG4167         216 I  216 (267)
T ss_pred             h
Confidence            4

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=4.6e-25  Score=184.71  Aligned_cols=179  Identities=22%  Similarity=0.248  Sum_probs=133.5

Q ss_pred             cEEEeeeeEecC----CC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400         80 LRGRLGITLGLR----SG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR  150 (298)
Q Consensus        80 ~i~~~~v~~~~~----~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~  150 (298)
                      .+.++|++++|-    ++ ..+       +++|+||+++.||++.+-        |||  ||  ++|+       +    
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~Lp-------V~~~vslsV~aGECvvL~--------G~SG~GKStllr~-------L----   57 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLP-------VLRNVSLSVNAGECVVLH--------GPSGSGKSTLLRS-------L----   57 (235)
T ss_pred             eeeeecchhheEeeecCCEEee-------eeeceeEEecCccEEEee--------CCCCCcHHHHHHH-------H----
Confidence            367777777662    22 123       999999999999999999        999  99  9998       7    


Q ss_pred             ccccccCCceeecc-------------------CCCcEEEEcCcCC-CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400        151 DQLWPLFGGTVTKP-------------------PRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL  210 (298)
Q Consensus       151 ~~l~~~~~G~i~~~-------------------~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l  210 (298)
                      -+-|.|++|+|...                   .++.||||+|--. ++.-+-.|-+.-|...... .......+...++
T Consensus        58 YaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv-~~~~a~~~a~~Ll  136 (235)
T COG4778          58 YANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV-PREVARAKAADLL  136 (235)
T ss_pred             HhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCC-CHHHHHHHHHHHH
Confidence            77788999997420                   2467999999653 3333445555444321110 0111234567778


Q ss_pred             HHcCCchhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400        211 QKVQLGYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT  286 (298)
Q Consensus       211 ~~~~l~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi  286 (298)
                      .++++.+-+ ..+         +.++||||||||.|||.|+.+-+||+|||||++||......+.+++.+   .|..+|=
T Consensus       137 ~rLnlperLW~La---------PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvG  207 (235)
T COG4778         137 TRLNLPERLWSLA---------PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVG  207 (235)
T ss_pred             HHcCCCHHHhcCC---------CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEE
Confidence            888886532 332         689999999999999999999999999999999999999988888765   5999999


Q ss_pred             EecCcchh
Q psy11400        287 VSHRKSLW  294 (298)
Q Consensus       287 itH~l~~~  294 (298)
                      |=||.+.-
T Consensus       208 IFHDeevr  215 (235)
T COG4778         208 IFHDEEVR  215 (235)
T ss_pred             eeccHHHH
Confidence            99997653

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=1.6e-24  Score=187.63  Aligned_cols=165  Identities=19%  Similarity=0.249  Sum_probs=124.2

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~  168 (298)
                      +|+++|++|.+|+++.|+        |.|  ||  |++.       +    +|-.+|++|+|...           ....
T Consensus        21 ~l~~~sL~I~~g~FvtVi--------GsNGAGKSTlln~-------i----aG~l~~t~G~I~Idg~dVtk~~~~~RA~~   81 (263)
T COG1101          21 ALNGLSLEIAEGDFVTVI--------GSNGAGKSTLLNA-------I----AGDLKPTSGQILIDGVDVTKKSVAKRANL   81 (263)
T ss_pred             HHhcCceeecCCceEEEE--------cCCCccHHHHHHH-------h----hCccccCCceEEECceecccCCHHHHhhH
Confidence            999999999999999999        999  99  9999       8    99999999998532           1245


Q ss_pred             EEEEcCcCC---CCCCCHHHHHccCCcchhh--hhcCCC---HHHHHHHHHHcCCchhhhhcCCcccc-cccCCCCChhH
Q psy11400        169 LFYVPQRPY---MTLGTLRDQVIYPHTKEDM--IQKGIT---DADLTEYLQKVQLGYILNREKGWDTV-ADWIDVLSGGE  239 (298)
Q Consensus       169 i~~v~Q~~~---l~~~tv~eni~~~~~~~~~--~~~~~~---~~~i~~~l~~~~l~~~~~~~~g~d~~-~~~~~~LSgGq  239 (298)
                      ++-|+|+|.   ....|+.||+.......+.  ......   .+...+-++.+++.        ++.. ..+..-|||||
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg--------LenrL~~~iglLSGGQ  153 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG--------LENRLSDRIGLLSGGQ  153 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccc--------hhhhhcChhhhccchH
Confidence            888999996   3467999999864321100  000011   12233344444432        2221 22467899999


Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH----HHhcCcEEEEEecCcchhh
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY----CREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~----l~~~~~TiIiitH~l~~~~  295 (298)
                      ||-++++.|.++.|++|+|||-|++|||.+...++++    ..+.+.|.++|||.+.-+-
T Consensus       154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al  213 (263)
T COG1101         154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL  213 (263)
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHH
Confidence            9999999999999999999999999999998888765    3446899999999987543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.90  E-value=1.2e-24  Score=178.11  Aligned_cols=121  Identities=33%  Similarity=0.514  Sum_probs=100.3

Q ss_pred             eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCcE
Q psy11400        105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGKL  169 (298)
Q Consensus       105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~i  169 (298)
                      |+|+||+|++|++++|+        |+|  ||  |+++       +    .|+++|++|.|...           .++.+
T Consensus         1 L~~v~~~i~~g~~~~i~--------G~nGsGKStLl~~-------l----~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i   61 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIV--------GPNGSGKSTLLKA-------L----AGLLPPDSGSILINGKDISDIDIEELRRRI   61 (137)
T ss_dssp             EEEEEEEEETTSEEEEE--------ESTTSSHHHHHHH-------H----TTSSHESEEEEEETTEEGTTSHHHHHHHTE
T ss_pred             CCceEEEEcCCCEEEEE--------ccCCCccccceee-------e----cccccccccccccccccccccccccccccc
Confidence            68999999999999999        999  99  9999       8    99999999998532           25679


Q ss_pred             EEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400        170 FYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       170 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa  248 (298)
                      +|++|++.++.. |+.+|.              .++++.++++.+++.++.+..     .......||+|||||++||||
T Consensus        62 ~~~~~~~~~~~~~tv~~~~--------------~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~LS~Ge~~rl~la~a  122 (137)
T PF00005_consen   62 GYVPQDPQLFPGLTVRENE--------------SDERIEEVLKKLGLEDLLDRK-----IGQRASSLSGGEKQRLALARA  122 (137)
T ss_dssp             EEEESSHCHHTTSBHHHHH--------------HHHHHHHHHHHTTHGGGTGSB-----GTSCGGGSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccc--------------ccccccccccccccccccccc-----cccccchhhHHHHHHHHHHHH
Confidence            999999877654 799981              235678888988887654432     112347999999999999999


Q ss_pred             HhcCCCEEEEecccc
Q psy11400        249 FYHRPQFAILDECTS  263 (298)
Q Consensus       249 L~~~P~iliLDEPTs  263 (298)
                      |+++|+++||||||+
T Consensus       123 l~~~~~llllDEPt~  137 (137)
T PF00005_consen  123 LLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHTTSSEEEEESTTT
T ss_pred             HHcCCCEEEEeCCCC
Confidence            999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=6.9e-24  Score=187.14  Aligned_cols=163  Identities=18%  Similarity=0.180  Sum_probs=127.8

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCC-
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPY-  177 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~-  177 (298)
                      .+|+||||++++||.++|+        |+|  ||  |+++       |    +|+++|++|++...  .+|+++..-.. 
T Consensus        41 ~aL~disf~i~~Ge~vGii--------G~NGaGKSTLlkl-------i----aGi~~Pt~G~v~v~--G~v~~li~lg~G   99 (249)
T COG1134          41 WALKDISFEIYKGERVGII--------GHNGAGKSTLLKL-------I----AGIYKPTSGKVKVT--GKVAPLIELGAG   99 (249)
T ss_pred             EEecCceEEEeCCCEEEEE--------CCCCCcHHHHHHH-------H----hCccCCCCceEEEc--ceEehhhhcccC
Confidence            4999999999999999999        999  99  9999       8    99999999998753  34555444332 


Q ss_pred             -CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400        178 -MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA  256 (298)
Q Consensus       178 -l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il  256 (298)
                       -+..|-+|||.+-....... ....++..++..+..+|.++++.|         ..++|.||+-|+++|-|...+|++|
T Consensus       100 f~pelTGreNi~l~~~~~G~~-~~ei~~~~~eIieFaELG~fi~~P---------vktYSSGM~aRLaFsia~~~~pdIL  169 (249)
T COG1134         100 FDPELTGRENIYLRGLILGLT-RKEIDEKVDEIIEFAELGDFIDQP---------VKTYSSGMYARLAFSVATHVEPDIL  169 (249)
T ss_pred             CCcccchHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHHHHHhhCc---------hhhccHHHHHHHHHhhhhhcCCCEE
Confidence             23458999997532111100 112245667778888899998886         7899999999999999999999999


Q ss_pred             EEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400        257 ILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       257 iLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~  296 (298)
                      |+||..+..|+.-.++-.+.+.   +.+.|+|+|||+++.++.
T Consensus       170 llDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~  212 (249)
T COG1134         170 LLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQ  212 (249)
T ss_pred             EEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            9999999999976655444433   237999999999998874

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.1e-23  Score=182.32  Aligned_cols=183  Identities=22%  Similarity=0.213  Sum_probs=141.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--  153 (298)
                      +++++|++....+.+.        +|+++||+|++||+.+|+        |||  ||  |.+.       |    +|.  
T Consensus         3 ~L~I~dLhv~v~~~ke--------ILkgvnL~v~~GEvhaiM--------GPNGsGKSTLa~~-------i----~G~p~   55 (251)
T COG0396           3 MLEIKDLHVEVEGKKE--------ILKGVNLTVKEGEVHAIM--------GPNGSGKSTLAYT-------I----MGHPK   55 (251)
T ss_pred             eeEEeeeEEEecCchh--------hhcCcceeEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5889999998853223        999999999999999999        999  99  8877       5    553  


Q ss_pred             cccCCceeecc------------CCCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhh--cCCCHHHHHHHHHHcCCch-
Q psy11400        154 WPLFGGTVTKP------------PRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQ--KGITDADLTEYLQKVQLGY-  217 (298)
Q Consensus       154 ~~~~~G~i~~~------------~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~-  217 (298)
                      |.+++|+|...            .|..|...+|.|.-++| ++.+.+...........  ......+++++++.+++++ 
T Consensus        56 Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~  135 (251)
T COG0396          56 YEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE  135 (251)
T ss_pred             ceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH
Confidence            46788887531            35679999999986666 88888765432110000  0122467888999999986 


Q ss_pred             hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHH---HHhcCcEEEEEecCcchh
Q psy11400        218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY---CREVGITLFTVSHRKSLW  294 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~---l~~~~~TiIiitH~l~~~  294 (298)
                      +++|.-        ...+|||||+|..|+.+++.+|++.|||||-||||....+.+.+-   +++.+.++++|||...+.
T Consensus       136 ~l~R~v--------N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll  207 (251)
T COG0396         136 FLERYV--------NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL  207 (251)
T ss_pred             Hhhccc--------CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence            666631        246999999999999999999999999999999999887776654   455699999999998876


Q ss_pred             hhc
Q psy11400        295 THH  297 (298)
Q Consensus       295 ~~~  297 (298)
                      .|.
T Consensus       208 ~~i  210 (251)
T COG0396         208 DYI  210 (251)
T ss_pred             hhc
Confidence            653

>PLN03140 ABC transporter G family member; Provisional

Probab=99.90  E-value=5.8e-24  Score=230.46  Aligned_cols=165  Identities=16%  Similarity=0.210  Sum_probs=127.5

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC---Cceeecc--------CCC
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF---GGTVTKP--------PRG  167 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~---~G~i~~~--------~r~  167 (298)
                      .+|+|+|+.|++|++++|+        |||  ||  |+++       |    +|..+|+   +|+|...        .++
T Consensus       179 ~IL~~vs~~i~~Ge~~~ll--------GpnGSGKSTLLk~-------L----aG~l~~~~~~~G~I~~nG~~~~~~~~~~  239 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLL--------GPPSSGKTTLLLA-------L----AGKLDPSLKVSGEITYNGYRLNEFVPRK  239 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEE--------cCCCCCHHHHHHH-------H----hCCCCCCCcceeEEEECCEechhhcccc
Confidence            4999999999999999999        999  99  9999       8    8888887   8988532        256


Q ss_pred             cEEEEcCcCCCC-CCCHHHHHccCCcchh----------hhhcC-----CCH------------------HHHHHHHHHc
Q psy11400        168 KLFYVPQRPYMT-LGTLRDQVIYPHTKED----------MIQKG-----ITD------------------ADLTEYLQKV  213 (298)
Q Consensus       168 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~----------~~~~~-----~~~------------------~~i~~~l~~~  213 (298)
                      .++||+|++.++ ..|++|++.|+.....          .....     ..+                  ..++.+++.+
T Consensus       240 ~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l  319 (1470)
T PLN03140        240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL  319 (1470)
T ss_pred             eeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc
Confidence            799999998665 5799999987532110          00000     000                  1135577778


Q ss_pred             CCchhhhhcCCccccc--ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEE
Q psy11400        214 QLGYILNREKGWDTVA--DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTV  287 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~--~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIii  287 (298)
                      ||.+..+      +.+  .....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.+++    .|+|+|++
T Consensus       320 GL~~~~~------t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis  393 (1470)
T PLN03140        320 GLDICKD------TIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS  393 (1470)
T ss_pred             CCccccC------ceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            8765432      222  24578999999999999999999999999999999999999998887765    38899999


Q ss_pred             ecCcc
Q psy11400        288 SHRKS  292 (298)
Q Consensus       288 tH~l~  292 (298)
                      +|+++
T Consensus       394 ~Hqp~  398 (1470)
T PLN03140        394 LLQPA  398 (1470)
T ss_pred             ecCCC
Confidence            99974

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.89  E-value=2.9e-23  Score=181.34  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=105.1

Q ss_pred             eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc---------eee--------cc
Q psy11400        106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG---------TVT--------KP  164 (298)
Q Consensus       106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G---------~i~--------~~  164 (298)
                      ++++|++++| +++|+        |||  ||  |+++       +    .++.++..|         ++.        ..
T Consensus        14 ~~~~l~~~~g-~~~i~--------G~nGsGKStll~a-------l----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (197)
T cd03278          14 DKTTIPFPPG-LTAIV--------GPNGSGKSNIIDA-------I----RWVLGEQSAKSLRGEKMSDVIFAGSETRKPA   73 (197)
T ss_pred             CCeeeecCCC-cEEEE--------CCCCCCHHHHHHH-------H----HHHhccccchhhcccCHHHHhccCCCCCCCC
Confidence            6789999999 99999        999  99  8888       5    555433322         221        11


Q ss_pred             CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHH
Q psy11400        165 PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVA  244 (298)
Q Consensus       165 ~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRla  244 (298)
                      .+.+|+||||+|..+         |+..         ..+++.++++.   .+..+         .++.+||||||||++
T Consensus        74 ~~~~v~~vfq~~~~~---------~~~~---------~~~~~~~~l~~---~~~~~---------~~~~~LS~G~kqrl~  123 (197)
T cd03278          74 NFAEVTLTFDNSDGR---------YSII---------SQGDVSEIIEA---PGKKV---------QRLSLLSGGEKALTA  123 (197)
T ss_pred             ceEEEEEEEEcCCCc---------eeEE---------ehhhHHHHHhC---CCccc---------cchhhcCHHHHHHHH
Confidence            246799999999655         2210         12345566655   22222         246789999999999


Q ss_pred             HHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        245 MARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       245 iARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      |||+++    .+|++++|||||++||+.....+.+.+++.  +.|+|+|||+++.+..
T Consensus       124 la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~  181 (197)
T cd03278         124 LALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA  181 (197)
T ss_pred             HHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence            999997    467999999999999999999999888763  7899999999987654

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0059|consensus

Probab=99.88  E-value=3.6e-23  Score=216.04  Aligned_cols=180  Identities=18%  Similarity=0.160  Sum_probs=147.7

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..+..+|+++.|+....        +++++||.|++||+.++.        |+|  ||  ++++       +    .|..
T Consensus       563 ~~~~~~~L~k~y~~~~~--------Av~~ls~~V~~gecfgLL--------G~NGAGKtT~f~m-------l----tG~~  615 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG--------AVRGLSFAVPPGECFGLL--------GVNGAGKTTTFKM-------L----TGET  615 (885)
T ss_pred             ceEEEcceeeeecchhh--------hhcceEEEecCCceEEEe--------cCCCCCchhhHHH-------H----hCCc
Confidence            46889999999965433        899999999999999999        999  99  9998       8    9999


Q ss_pred             ccCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        155 PLFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +|++|++...            .++.+||+||...++. .|.+|.+.+-....+.... .-.+.+++.++.+++.+..++
T Consensus       616 ~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~-di~~~v~~ll~~~~L~~~~~~  694 (885)
T KOG0059|consen  616 KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRS-DIGSAIEKLLRLVGLGPYANK  694 (885)
T ss_pred             cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChh-HHHHHHHHHHHHcCChhhhcc
Confidence            9999997531            3567999999987764 6999998754322111001 113457888999999887776


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      +         .+.+|||+|+|+++|.|++.+|++++|||||+|+||..++.+++.+++   .++.+|++||.++...
T Consensus       695 ~---------~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E  762 (885)
T KOG0059|consen  695 Q---------VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAE  762 (885)
T ss_pred             c---------hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence            4         679999999999999999999999999999999999999999988764   3559999999998764

>KOG0927|consensus

Probab=99.87  E-value=1.6e-22  Score=194.17  Aligned_cols=177  Identities=19%  Similarity=0.170  Sum_probs=145.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..+.+.||+|.|+++..        ++++++|.|..++++++|        |||  ||  |+++       +    .|..
T Consensus       388 pvi~~~nv~F~y~~~~~--------iy~~l~fgid~~srvAlV--------GPNG~GKsTLlKl-------~----~gdl  440 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDNPM--------IYKKLNFGIDLDSRVALV--------GPNGAGKSTLLKL-------I----TGDL  440 (614)
T ss_pred             CeEEEeccccCCCCcch--------hhhhhhcccCcccceeEe--------cCCCCchhhhHHH-------H----hhcc
Confidence            46899999999975543        899999999999999999        999  99  8899       7    8888


Q ss_pred             ccCCceeeccCCCcEEEEcCcCC---CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPY---MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVAD  230 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~  230 (298)
                      .|..|.+......++++.-|+..   ....+..+++.-...      .....+++..++..+|+... ...         
T Consensus       441 ~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~------~~~~~e~~r~ilgrfgLtgd~q~~---------  505 (614)
T KOG0927|consen  441 QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFP------DEKELEEMRSILGRFGLTGDAQVV---------  505 (614)
T ss_pred             ccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcc------ccchHHHHHHHHHHhCCCcccccc---------
Confidence            99999998766667777777652   234466666542211      12346778899999999742 222         


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhhc
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~~  297 (298)
                      ...+||+|||.||.+||+++..|.+|+|||||++||.++...+.+.+.+..-++|+|||+.-++.+.
T Consensus       506 p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qV  572 (614)
T KOG0927|consen  506 PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV  572 (614)
T ss_pred             chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHH
Confidence            3679999999999999999999999999999999999999999999999888999999999888763

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=2.6e-22  Score=179.25  Aligned_cols=158  Identities=22%  Similarity=0.209  Sum_probs=115.6

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec----cCC------CcE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK----PPR------GKL  169 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~----~~r------~~i  169 (298)
                      +++|+||+|++|++++++        |+|  ||  ++|+       |    .|+..|++|++..    |.+      +++
T Consensus        39 AVqdisf~IP~G~ivgfl--------GaNGAGKSTtLKm-------L----TGll~p~~G~v~V~G~~Pf~~~~~~~~~~   99 (325)
T COG4586          39 AVQDISFEIPKGEIVGFL--------GANGAGKSTTLKM-------L----TGLLLPTSGKVRVNGKDPFRRREEYLRSI   99 (325)
T ss_pred             hhheeeeecCCCcEEEEE--------cCCCCcchhhHHH-------H----hCccccCCCeEEecCcCcchhHHHHHHHH
Confidence            899999999999999999        999  99  9999       8    9999999999863    222      235


Q ss_pred             EEEc-CcCCCC-CCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH
Q psy11400        170 FYVP-QRPYMT-LGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV  243 (298)
Q Consensus       170 ~~v~-Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl  243 (298)
                      ++|+ |..-+. ...+.|-+....    .+ ..+.    .++.....+.++++.+++.|         ...||-|||.|+
T Consensus       100 ~~v~gqk~ql~Wdlp~~ds~~v~~----~I-y~Ipd~~F~~r~~~l~eiLdl~~~lk~~---------vr~LSlGqRmra  165 (325)
T COG4586         100 GLVMGQKLQLWWDLPALDSLEVLK----LI-YEIPDDEFAERLDFLTEILDLEGFLKWP---------VRKLSLGQRMRA  165 (325)
T ss_pred             HHHhhhhheeeeechhhhhHHHHH----HH-HhCCHHHHHHHHHHHHHHhcchhhhhhh---------hhhccchHHHHH
Confidence            5443 222111 111111111000    00 1122    24455566666776666543         679999999999


Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .||.||+|+|++|+|||||-|||..++..+.+.+++    .++||+..||+++-+
T Consensus       166 eLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di  220 (325)
T COG4586         166 ELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI  220 (325)
T ss_pred             HHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhH
Confidence            999999999999999999999999999988888765    589999999998744

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.86  E-value=1.1e-21  Score=178.18  Aligned_cols=84  Identities=31%  Similarity=0.402  Sum_probs=70.1

Q ss_pred             HHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC---CCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        204 ADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR---PQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       204 ~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~---P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      .+..++++.++|.++ +++         ...+|||||+||++|||+|+.+   |+++||||||++||+.....+.+.+++
T Consensus       147 ~~~~~~L~~vgL~~l~l~~---------~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~  217 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQ---------PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR  217 (261)
T ss_pred             HHHHHHHHHcCCchhhhcC---------ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            345667778888653 333         3679999999999999999996   799999999999999999988887764


Q ss_pred             ---cCcEEEEEecCcchhhh
Q psy11400        280 ---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       280 ---~~~TiIiitH~l~~~~~  296 (298)
                         .|.|+|+|||+++.+..
T Consensus       218 l~~~g~tvIiitH~~~~i~~  237 (261)
T cd03271         218 LVDKGNTVVVIEHNLDVIKC  237 (261)
T ss_pred             HHhCCCEEEEEeCCHHHHHh
Confidence               48999999999987654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0066|consensus

Probab=99.85  E-value=1.8e-21  Score=183.10  Aligned_cols=174  Identities=24%  Similarity=0.233  Sum_probs=143.3

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..+-+.||+|.||...+        ++++++|.|.-...++||        |||  ||  |+++       |    .|-+
T Consensus       585 PvLGlH~VtFgy~gqkp--------LFkkldFGiDmdSRiaIV--------GPNGVGKSTlLkL-------L----~Gkl  637 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQKP--------LFKKLDFGIDMDSRIAIV--------GPNGVGKSTLLKL-------L----IGKL  637 (807)
T ss_pred             CeeecccccccCCCCCc--------hhhcccccccccceeEEE--------CCCCccHHHHHHH-------H----hcCC
Confidence            46789999999986555        899999999999999999        999  99  8888       6    7777


Q ss_pred             ccCCceeeccCCCcEEEEcCcCC--C-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPY--M-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW  231 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~  231 (298)
                      .|..|+.....|-+||+.-|+..  + ...|-.|.+.-.        .....++.+..|-.+||......-        .
T Consensus       638 ~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~--------FNlpyq~ARK~LG~fGL~sHAHTi--------k  701 (807)
T KOG0066|consen  638 DPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK--------FNLPYQEARKQLGTFGLASHAHTI--------K  701 (807)
T ss_pred             CCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh--------cCCChHHHHHHhhhhhhhhccceE--------e
Confidence            89999998887888999999863  2 123666655432        134456677888888885433221        2


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      ...||||||-||++|-.-+..|++|||||||++||.++...+-+.+.+.+-.||+|||+..++.
T Consensus       702 ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~  765 (807)
T KOG0066|consen  702 IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIV  765 (807)
T ss_pred             eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceee
Confidence            5689999999999999999999999999999999999999999999998889999999987764

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.83  E-value=6.9e-20  Score=170.75  Aligned_cols=228  Identities=15%  Similarity=0.119  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeee
Q psy11400          7 YYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGI   86 (298)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v   86 (298)
                      -.++.-.+..+..|+.+++.....+.++..+..+|.++-......+   +            +.. ...+.-..++++||
T Consensus       265 a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~---~------------~~~-q~~p~~~~lelrnv  328 (546)
T COG4615         265 AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD---F------------PRP-QAFPDWKTLELRNV  328 (546)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc---C------------CCC-CcCCcccceeeeee
Confidence            3445566677888999999999999999999999987654211100   0            000 01111246999999


Q ss_pred             eEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400         87 TLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT  162 (298)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~  162 (298)
                      .|+|+....        -+..||++|++||.+-|+        |.|  ||  +.++       +    .|++.|++|+|.
T Consensus       329 rfay~~~~F--------hvgPiNl~ikrGelvFli--------G~NGsGKST~~~L-------L----tGL~~PqsG~I~  381 (546)
T COG4615         329 RFAYQDNAF--------HVGPINLTIKRGELVFLI--------GGNGSGKSTLAML-------L----TGLYQPQSGEIL  381 (546)
T ss_pred             eeccCcccc--------eecceeeEEecCcEEEEE--------CCCCCcHHHHHHH-------H----hcccCCCCCcee
Confidence            999986554        578899999999999999        999  99  8888       7    999999999986


Q ss_pred             ccC-----------CCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400        163 KPP-----------RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW  231 (298)
Q Consensus       163 ~~~-----------r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~  231 (298)
                      .+.           |+-++-||-|-++|.     .+.-+.       ...+.+.+...++.+.+.+.....+|--    -
T Consensus       382 ldg~pV~~e~ledYR~LfSavFsDyhLF~-----~ll~~e-------~~as~q~i~~~LqrLel~~ktsl~d~~f----s  445 (546)
T COG4615         382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFD-----QLLGPE-------GKASPQLIEKWLQRLELAHKTSLNDGRF----S  445 (546)
T ss_pred             ECCccCCCCCHHHHHHHHHHHhhhHhhhH-----hhhCCc-------cCCChHHHHHHHHHHHHhhhhcccCCcc----c
Confidence            321           233444454444432     121111       1256678888899888876543322100    1


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH----HHHhcCcEEEEEecCcch
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE----YCREVGITLFTVSHRKSL  293 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~----~l~~~~~TiIiitH~l~~  293 (298)
                      .-.||-|||+|+++.-|++-+-+|++|||=.+--||.-++.++.    .+++.|+||+.||||-..
T Consensus       446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y  511 (546)
T COG4615         446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY  511 (546)
T ss_pred             ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence            34799999999999999999999999999999999999988875    467789999999998653

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3.1e-20  Score=180.01  Aligned_cols=165  Identities=22%  Similarity=0.301  Sum_probs=125.6

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc------------CCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP------------PRG  167 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~------------~r~  167 (298)
                      .++|+||++++||+++|.        |--  |+  +++.       +    .|+-++.+|+|...            .+.
T Consensus       274 ~~~dvSf~vr~GEIlGia--------GLvGaGRTEl~~~-------l----fG~~~~~~G~i~l~G~~v~~~sp~~Ai~~  334 (500)
T COG1129         274 KVRDVSFTVRAGEILGIA--------GLVGAGRTELARA-------L----FGARPASSGEILLDGKPVRIRSPRDAIKA  334 (500)
T ss_pred             ceeCceeEEeCCcEEEEe--------ccccCCHHHHHHH-------H----hCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence            489999999999999999        988  88  8888       7    88888889998632            134


Q ss_pred             cEEEEcCcCC----CCCCCHHHHHccCCcchh----hhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400        168 KLFYVPQRPY----MTLGTLRDQVIYPHTKED----MIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE  239 (298)
Q Consensus       168 ~i~~v~Q~~~----l~~~tv~eni~~~~~~~~----~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq  239 (298)
                      .|+|||.|--    +...+|++|+.++.....    ........+.+.++.+.+++...        .......+||||.
T Consensus       335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~--------s~~~~v~~LSGGN  406 (500)
T COG1129         335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP--------SPEQPIGTLSGGN  406 (500)
T ss_pred             CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccC--------CccchhhcCCchh
Confidence            6999998753    346799999988721110    11111123345566666666321        1112467999999


Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ||||.|||.|..+|++|||||||-|+|.-++.+|++++++   .|++||+||-++..+-
T Consensus       407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll  465 (500)
T COG1129         407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELL  465 (500)
T ss_pred             hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            9999999999999999999999999999999999998775   5999999999887543

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=4.8e-20  Score=165.30  Aligned_cols=66  Identities=27%  Similarity=0.413  Sum_probs=57.9

Q ss_pred             cCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      .+..||||||||++|||||+.    +|+++||||||++||+...+.+.+.+++.  +.|+|+++|+.+....
T Consensus       155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~  226 (243)
T cd03272         155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV  226 (243)
T ss_pred             cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence            567999999999999999973    58999999999999999999999888763  7889999999876544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=1.7e-20  Score=169.53  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=110.8

Q ss_pred             CcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC-Cceeec--------------cCCCcEEEEcCc
Q psy11400        115 ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF-GGTVTK--------------PPRGKLFYVPQR  175 (298)
Q Consensus       115 g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~-~G~i~~--------------~~r~~i~~v~Q~  175 (298)
                      ..+++|+        |||  ||  |+++       +    .++..+. .|++..              ....++++++|+
T Consensus        25 ~~~~~Iv--------G~NGsGKStll~A-------i----~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~   85 (251)
T cd03273          25 PQFNAIT--------GLNGSGKSNILDA-------I----CFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDN   85 (251)
T ss_pred             CCeEEEE--------CCCCCCHHHHHHH-------H----HHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEc
Confidence            5689999        999  99  8887       5    4444433 222210              112379999998


Q ss_pred             CCC----------CCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCc--hhh--------hh-cCCcccccccCC
Q psy11400        176 PYM----------TLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLG--YIL--------NR-EKGWDTVADWID  233 (298)
Q Consensus       176 ~~l----------~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~--~~~--------~~-~~g~d~~~~~~~  233 (298)
                      +..          +..|+.+++..+....... ......+++.++++.+++.  ...        .. ....+.....+.
T Consensus        86 ~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~  165 (251)
T cd03273          86 SDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLT  165 (251)
T ss_pred             CCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccccc
Confidence            631          1347777776543211101 1223457888999999985  100        00 000011123577


Q ss_pred             CCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      +||+|||||++|||||+    .+|++++|||||++||+.....+.+.+++  .|.|+|+|||+.+....
T Consensus       166 ~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~  234 (251)
T cd03273         166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN  234 (251)
T ss_pred             ccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence            99999999999999998    57899999999999999999999998876  48899999999876654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.82  E-value=2.7e-20  Score=164.34  Aligned_cols=163  Identities=15%  Similarity=0.059  Sum_probs=106.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEe-CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc-cc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVR-GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD-QL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~-~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~-~l  153 (298)
                      .|+++|+. .|...            .+++|+.. +|++++|+        |+|  ||  |+++       +    . .+
T Consensus         5 ~i~l~nf~-~y~~~------------~~i~~~~~~~~~~~~i~--------G~NGsGKSTll~~-------i----~~~l   52 (213)
T cd03279           5 KLELKNFG-PFREE------------QVIDFTGLDNNGLFLIC--------GPTGAGKSTILDA-------I----TYAL   52 (213)
T ss_pred             EEEEECCc-CcCCc------------eEEeCCCCCccCEEEEE--------CCCCCCHHHHHHH-------h----eeeE
Confidence            47888877 55321            34667644 58999999        999  99  8887       4    2 22


Q ss_pred             cccCCceee----------ccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHH--HHHcCCchhhhh
Q psy11400        154 WPLFGGTVT----------KPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEY--LQKVQLGYILNR  221 (298)
Q Consensus       154 ~~~~~G~i~----------~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~--l~~~~l~~~~~~  221 (298)
                      +-+..+...          ......|++++|++....    .+..++         ..+.+...+.  ++..++.+++++
T Consensus        53 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~----~~~r~~---------gl~~~~~~~~~~l~~g~l~~~l~~  119 (213)
T cd03279          53 YGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY----RVERSR---------GLDYDQFTRIVLLPQGEFDRFLAR  119 (213)
T ss_pred             ecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE----EEEEec---------CCCHHHHHHhhhhhhcchHHHhcC
Confidence            222222111          112346899999873111    111111         2222333222  233334444433


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhc----------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEe
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYH----------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVS  288 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~----------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiit  288 (298)
                               .+.+||+|||||++|||||+.          +|+++||||||++||+.....+.+.+++   .+.|+|+||
T Consensus       120 ---------~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~it  190 (213)
T cd03279         120 ---------PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVIS  190 (213)
T ss_pred             ---------CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence                     367999999999999999985          5789999999999999999888877654   378999999


Q ss_pred             cCcchhhh
Q psy11400        289 HRKSLWTH  296 (298)
Q Consensus       289 H~l~~~~~  296 (298)
                      |+++.+..
T Consensus       191 H~~~~~~~  198 (213)
T cd03279         191 HVEELKER  198 (213)
T ss_pred             CchHHHHh
Confidence            99987654

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0062|consensus

Probab=99.80  E-value=9e-20  Score=174.55  Aligned_cols=175  Identities=20%  Similarity=0.183  Sum_probs=142.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..+++.+|+|.|..+...       .+.++++.++.-..++++        |+|  ||  ++++       +    .+-.
T Consensus       361 p~l~i~~V~f~y~p~~y~-------~~~~~~~d~e~~sRi~~v--------g~ng~gkst~lKi-------~----~~~l  414 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEYQ-------WRKQLGLDRESDSRISRV--------GENGDGKSTLLKI-------L----KGDL  414 (582)
T ss_pred             CeeEEEeeeccCCCcchh-------hhhccCCccchhhhhhee--------ccCchhHHHHHHH-------H----hccC
Confidence            468999999999666533       799999999999999999        999  99  6687       6    6655


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCC-CCC--HHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMT-LGT--LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVAD  230 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~-~~t--v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~  230 (298)
                      .|..|.+....|.+|+|-+|.-.-+ ...  ..|...       ...++..++++++.|..+|++. +...+        
T Consensus       415 ~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~-------~~~pG~~~ee~r~hl~~~Gl~g~la~~s--------  479 (582)
T KOG0062|consen  415 TPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFME-------KSFPGKTEEEIRRHLGSFGLSGELALQS--------  479 (582)
T ss_pred             CcccceeeecccceecchhHhhhhHHHHHhHHHHHHH-------HhCCCCCHHHHHHHHHhcCCCchhhhcc--------
Confidence            6788888888889999999976322 111  112111       1123457889999999999974 33332        


Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                       ...||||||-||+||.+...+|.+|+|||||+.||.++...+.+.++..+-.||+|||+.+++.
T Consensus       480 -i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~  543 (582)
T KOG0062|consen  480 -IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFIS  543 (582)
T ss_pred             -ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence             4689999999999999999999999999999999999999999999998889999999998775

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.79  E-value=3.1e-19  Score=156.70  Aligned_cols=144  Identities=20%  Similarity=0.135  Sum_probs=102.8

Q ss_pred             eeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee--------ccCCCcEEEEcCc
Q psy11400        108 YMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT--------KPPRGKLFYVPQR  175 (298)
Q Consensus       108 isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~--------~~~r~~i~~v~Q~  175 (298)
                      .++++.+| +++|+        |||  ||  |+..       +.-...|..++..|.+.        ...+..|++++|+
T Consensus        16 ~~l~~~~g-~~~i~--------G~NGsGKTTLl~a-------i~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~   79 (204)
T cd03240          16 SEIEFFSP-LTLIV--------GQNGAGKTTIIEA-------LKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFEN   79 (204)
T ss_pred             eEEecCCC-eEEEE--------CCCCCCHHHHHHH-------HHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEe
Confidence            34555667 99999        999  99  7777       42122466666666431        1224579999999


Q ss_pred             CC-----CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHH------H
Q psy11400        176 PY-----MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR------V  243 (298)
Q Consensus       176 ~~-----l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR------l  243 (298)
                      +.     +. ..|+.+|+.+..           .+++.+.+         ++         .+.+||+||+||      +
T Consensus        80 ~~~~~~~v~r~~~~~~~~~~~~-----------~~~~~~~~---------~~---------~~~~LS~G~~~~~~la~rl  130 (204)
T cd03240          80 ANGKKYTITRSLAILENVIFCH-----------QGESNWPL---------LD---------MRGRCSGGEKVLASLIIRL  130 (204)
T ss_pred             CCCCEEEEEEEhhHhhceeeec-----------hHHHHHHH---------hc---------CccccCccHHHHHHHHHHH
Confidence            82     11 137888886531           12222222         22         267899999996      7


Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHH-HHHHHHHhc----CcEEEEEecCcchhhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEG-SMYEYCREV----GITLFTVSHRKSLWTH  296 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~-~i~~~l~~~----~~TiIiitH~l~~~~~  296 (298)
                      ++|||++.+|++++|||||++||+.... .+.+++++.    +.|+|++||+++.+..
T Consensus       131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~  188 (204)
T cd03240         131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA  188 (204)
T ss_pred             HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence            8999999999999999999999999888 888877642    6799999999887653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.78  E-value=8.2e-19  Score=166.05  Aligned_cols=157  Identities=24%  Similarity=0.222  Sum_probs=119.0

Q ss_pred             ceeeeeEEE-----eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcC
Q psy11400        104 SFFDYMFGV-----RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQ  174 (298)
Q Consensus       104 ~l~~isl~i-----~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q  174 (298)
                      .+.++.|++     ..||+++++        |||  ||  +.++       |    +|..+|++|.   ...-+|+|=||
T Consensus       351 ~~g~F~L~V~~G~i~~gEvigil--------GpNgiGKTTFvk~-------L----AG~ikPdeg~---~~~~~vSyKPQ  408 (591)
T COG1245         351 TYGDFKLEVEEGEIYDGEVIGIL--------GPNGIGKTTFVKL-------L----AGVIKPDEGS---EEDLKVSYKPQ  408 (591)
T ss_pred             ecCceEEEecCCeeecceEEEEE--------CCCCcchHHHHHH-------H----hccccCCCCC---CccceEeecce
Confidence            445566655     456899999        999  99  8888       8    9999999998   33456999999


Q ss_pred             cCC-CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC
Q psy11400        175 RPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP  253 (298)
Q Consensus       175 ~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P  253 (298)
                      ... -+.+||.+.+.-.....     ..+..--.++++-++|+++++++         ..+|||||.|||+||.||.++.
T Consensus       409 yI~~~~~gtV~~~l~~~~~~~-----~~~s~~~~ei~~pl~l~~i~e~~---------v~~LSGGELQRvaIaa~L~reA  474 (591)
T COG1245         409 YISPDYDGTVEDLLRSAIRSA-----FGSSYFKTEIVKPLNLEDLLERP---------VDELSGGELQRVAIAAALSREA  474 (591)
T ss_pred             eecCCCCCcHHHHHHHhhhhh-----cccchhHHhhcCccchHHHHhcc---------cccCCchhHHHHHHHHHhcccc
Confidence            764 36789998775432110     01111234567777888888775         6799999999999999999999


Q ss_pred             CEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400        254 QFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       254 ~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      ++++||||++.||.+.+-.+    .+.+.+.++|.++|.||+-++-+
T Consensus       475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy  521 (591)
T COG1245         475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY  521 (591)
T ss_pred             CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence            99999999999998755444    34444568999999999976643

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.78  E-value=2.6e-20  Score=164.47  Aligned_cols=170  Identities=19%  Similarity=0.119  Sum_probs=108.7

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++++|.. .|. +..        ++++++|     ++++|+        |||  ||  ++++       +    ..+   
T Consensus         6 l~l~nfk-~~~-~~~--------~l~~~~~-----~i~~iv--------GpNGaGKSTll~~-------i----~~~---   48 (212)
T cd03274           6 LVLENFK-SYA-GEQ--------VIGPFHK-----SFSAIV--------GPNGSGKSNVIDS-------M----LFV---   48 (212)
T ss_pred             EEEECcc-cCC-CCe--------eeccCCC-----CeEEEE--------CCCCCCHHHHHHH-------H----HHH---
Confidence            6677764 553 333        7888887     899999        999  99  8888       5    211   


Q ss_pred             CCceeeccCCCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hh-hcCCCH--HH----HHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MI-QKGITD--AD----LTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~-~~~~~~--~~----i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      .+..+....++++++++|+..+++ .+.+++..+......  .. ..+...  ..    ..++++.+++.+..+      
T Consensus        49 ~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~------  122 (212)
T cd03274          49 FGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW------  122 (212)
T ss_pred             hccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccc------
Confidence            111111112356899999876543 466665544321100  00 000000  00    022233333332222      


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                         ..+..||+|||||++||||++.    +|++++|||||++||+.....+.+.+++.  +.|+|++||+.+....
T Consensus       123 ---~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~  195 (212)
T cd03274         123 ---KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFEL  195 (212)
T ss_pred             ---cchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHh
Confidence               1356899999999999999974    57999999999999999999999988763  6799999999876554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927|consensus

Probab=99.78  E-value=1.4e-18  Score=167.35  Aligned_cols=184  Identities=17%  Similarity=0.191  Sum_probs=117.4

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ...++++|+++.|+ +..        +++|..|++++|+.++|+        |+|  ||  ++++       +    ++-
T Consensus        73 s~dvk~~sls~s~~-g~~--------l~kd~~~El~~g~rygLi--------G~nG~Gkst~L~~-------i----~~~  124 (614)
T KOG0927|consen   73 SRDVKIESLSLSFH-GVE--------LIKDVTLELNRGRRYGLI--------GPNGSGKSTFLRA-------I----AGR  124 (614)
T ss_pred             cccceeeeeeeccC-Cce--------eeeeeeEEecCCceEEEE--------cCCCCcHhHHHHH-------H----hcC
Confidence            34689999999996 333        899999999999999999        999  88  8887       5    444


Q ss_pred             cccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcch--------hhhhcC---CC---HHHHHHHHHHcCCchhh
Q psy11400        154 WPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKE--------DMIQKG---IT---DADLTEYLQKVQLGYIL  219 (298)
Q Consensus       154 ~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~--------~~~~~~---~~---~~~i~~~l~~~~l~~~~  219 (298)
                      ..|..-+      -.+..+.++......+..+.+..+....        +.....   ..   -..+.+-+..++.+.+-
T Consensus       125 e~P~p~~------~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~  198 (614)
T KOG0927|consen  125 EVPIPEH------IDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFE  198 (614)
T ss_pred             CCCCCcc------cchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHH
Confidence            4442222      1223333332111223222222111000        000000   00   01122223333332211


Q ss_pred             hh----c--CCcc-cc-cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCc-EEEEEecC
Q psy11400        220 NR----E--KGWD-TV-ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI-TLFTVSHR  290 (298)
Q Consensus       220 ~~----~--~g~d-~~-~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~-TiIiitH~  290 (298)
                      .+    .  .|+. .. ..|..+||||++.|+++||||+.+|++|+|||||++||.++..++-++|.+... ++++++|.
T Consensus       199 ~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~  278 (614)
T KOG0927|consen  199 AKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHS  278 (614)
T ss_pred             HHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecc
Confidence            11    0  1111 11 237889999999999999999999999999999999999999999999998877 89999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      .+++.
T Consensus       279 QDfln  283 (614)
T KOG0927|consen  279 QDFLN  283 (614)
T ss_pred             hhhhh
Confidence            87654

>KOG0062|consensus

Probab=99.77  E-value=1.1e-18  Score=167.27  Aligned_cols=165  Identities=21%  Similarity=0.256  Sum_probs=119.3

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..|..++++.+|. ++.        +|.+-++++..|...+++        |+|  ||  |+|+       |    +.  
T Consensus        79 ~Di~~~~fdLa~G-~k~--------LL~~a~L~L~~GrRYGLv--------GrNG~GKsTLLRa-------i----a~--  128 (582)
T KOG0062|consen   79 KDIHIDNFDLAYG-GKI--------LLNKANLTLSRGRRYGLV--------GRNGIGKSTLLRA-------I----AN--  128 (582)
T ss_pred             cceeeeeeeeeec-chh--------hhcCCceeeeccccccee--------CCCCCcHHHHHHH-------H----Hh--
Confidence            4588899999995 444        899999999999999999        999  99  9998       6    22  


Q ss_pred             ccCCceeeccCCCcEEEEcCcC----------CCCCCCHHHHHccCCcchhhhhcCCCHHHHHH-HHHHcCCchhh-hhc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRP----------YMTLGTLRDQVIYPHTKEDMIQKGITDADLTE-YLQKVQLGYIL-NRE  222 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~----------~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~-~l~~~~l~~~~-~~~  222 (298)
                          |+|..      .-++|+-          .+-..+-+..+..-.   ..+....+.+++.. +|..+|..+-+ .+|
T Consensus       129 ----~~v~~------f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e---~~l~~~~~l~ei~~~~L~glGFt~emq~~p  195 (582)
T KOG0062|consen  129 ----GQVSG------FHVEQEVRGDDTEALQSVLESDTERLDFLAEE---KELLAGLTLEEIYDKILAGLGFTPEMQLQP  195 (582)
T ss_pred             ----cCcCc------cCchhheeccchHHHhhhhhccHHHHHHHHhh---hhhhccchHHHHHHHHHHhCCCCHHHHhcc
Confidence                33321      1122221          111222222222111   00011113445555 78888886543 333


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                               ..+||||-|-|+++||||..+||+|+|||||+.||.....++-+++.....|+|+||||-+...
T Consensus       196 ---------t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn  259 (582)
T KOG0062|consen  196 ---------TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN  259 (582)
T ss_pred             ---------ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence                     6799999999999999999999999999999999999999999999998999999999987654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.75  E-value=8.5e-18  Score=182.55  Aligned_cols=106  Identities=21%  Similarity=0.291  Sum_probs=78.1

Q ss_pred             CCHHHHHccCCcchhhhhc--CCCHHHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHh---cCCC
Q psy11400        181 GTLRDQVIYPHTKEDMIQK--GITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFY---HRPQ  254 (298)
Q Consensus       181 ~tv~eni~~~~~~~~~~~~--~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~---~~P~  254 (298)
                      .||.|++.+..........  ....+.+ ++++.+++.++ ++++         +.+||||||||++|||||+   .+|+
T Consensus       763 ~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~---------~~tLSGGE~QRV~LAraL~~~~~~P~  832 (1809)
T PRK00635        763 KNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP---------LSSLSGGEIQRLKLAYELLAPSKKPT  832 (1809)
T ss_pred             CCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc---------cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence            3778887765321100000  0012233 46777788665 4443         6799999999999999998   6999


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        255 FAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       255 iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ++||||||++||+...+.+.+++++   .|.|||+|||+++.++.
T Consensus       833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~  877 (1809)
T PRK00635        833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKV  877 (1809)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence            9999999999999999988887754   48999999999988754

>KOG0065|consensus

Probab=99.75  E-value=8.5e-19  Score=182.92  Aligned_cols=166  Identities=17%  Similarity=0.162  Sum_probs=129.3

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccc-ccccccccccCCceeecc--------CCCcE
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTL-GTLRDQLWPLFGGTVTKP--------PRGKL  169 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l-~~~~~~l~~~~~G~i~~~--------~r~~i  169 (298)
                      .+|+||+=-++||..+|++        |+|  ||  |+++       | +...+|.   .+|+|...        -++.+
T Consensus       805 qLL~~V~G~~kPG~LTALM--------G~SGAGKTTLLdv-------LA~R~t~G~---I~Gdi~i~G~p~~q~tF~R~~  866 (1391)
T KOG0065|consen  805 QLLNNVSGAFKPGVLTALM--------GESGAGKTTLLDV-------LAGRKTGGY---IEGDILISGFPKDQETFARVS  866 (1391)
T ss_pred             EhhhcCceEecCCceeehh--------cCCCCchHHHHHH-------HhcCcccce---EEeEEEECCeeCchhhhcccc
Confidence            4999999999999999999        999  99  8888       5 1111232   34555321        25679


Q ss_pred             EEEcCcCC-CCCCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCCchhhhhcCCcccccc-cCCCCChhHHHHH
Q psy11400        170 FYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQLGYILNREKGWDTVAD-WIDVLSGGEKQRV  243 (298)
Q Consensus       170 ~~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~d~~~~-~~~~LSgGqkQRl  243 (298)
                      |||-|+.. +...||+|-+.|....+..  ...+    .+.++++++.++|+++.+..      ++ .+.-||..||+|+
T Consensus       867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp--~~v~~~ek~~yVe~Vi~lleL~~~~dai------VG~~G~GLs~eQRKrL  938 (1391)
T KOG0065|consen  867 GYVEQQDIHSPELTVRESLRFSAALRLP--KEVSDEEKYEYVEEVIELLELKEYADAL------VGLPGSGLSTEQRKRL  938 (1391)
T ss_pred             ceeecccccCcccchHHHHHHHHHHcCC--CcCCHHHHHHHHHHHHHHhCchhhhhhh------ccCCCCCCCHHHhcee
Confidence            99999874 6678999999886422110  1111    25588999999998877553      33 4577999999999


Q ss_pred             HHHHHHhcCC-CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        244 AMARLFYHRP-QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       244 aiARaL~~~P-~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      .||--|+.+| .||+|||||||||.++...+.+.+++   .|.||+++-|++|..
T Consensus       939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~  993 (1391)
T KOG0065|consen  939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSID  993 (1391)
T ss_pred             eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHH
Confidence            9999999999 89999999999999999888888775   599999999999853

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.74  E-value=1.9e-17  Score=172.73  Aligned_cols=66  Identities=29%  Similarity=0.368  Sum_probs=59.9

Q ss_pred             cCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ...+||||||||++|||+|+.+|   +++||||||++||+.....+.+.+++   .|.|||+|+|+++.+..
T Consensus       827 ~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~  898 (943)
T PRK00349        827 PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKT  898 (943)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence            46799999999999999999999   99999999999999999988887664   48999999999988754

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=1.1e-17  Score=146.33  Aligned_cols=151  Identities=14%  Similarity=0.069  Sum_probs=97.8

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc-CCce----eec--cCCCcEEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL-FGGT----VTK--PPRGKLFYV  172 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~-~~G~----i~~--~~r~~i~~v  172 (298)
                      .++++++++.+| +.+|+        |||  ||  |+..       +.....+-... ..|.    +..  .....|.+.
T Consensus        11 ~~~~~~l~f~~g-l~~i~--------G~NGsGKStll~a-------i~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~   74 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIV--------GNNGSGKSAILTA-------LTIGLGGKASDTNRGSSLKDLIKDGESSAKITVT   74 (198)
T ss_pred             ceeeeEEecCCC-eEEEE--------CCCCCcHHHHHHH-------HHHHhcCCcccccccccHHHHhhCCCCeEEEEEE
Confidence            456777888776 77899        999  99  6665       31111111100 1121    000  113357788


Q ss_pred             cCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHH---
Q psy11400        173 PQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLF---  249 (298)
Q Consensus       173 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL---  249 (298)
                      +|+..++.     |   +.       .....+.+.++++.   .+..++         .+.+||+|||||++||+|+   
T Consensus        75 ~~~~~~~~-----~---~~-------~~~~~~~~~~~l~~---~~~~~~---------~~~~lS~G~k~r~~ia~al~~~  127 (198)
T cd03276          75 LKNQGLDA-----N---PL-------CVLSQDMARSFLTS---NKAAVR---------DVKTLSGGERSFSTVCLLLSLW  127 (198)
T ss_pred             EEcCCccC-----C---cC-------CHHHHHHHHHHhcc---ccccCC---------cccccChhHHHHHHHHHHHHHh
Confidence            88764433     1   11       11123455566654   222222         3679999999999999999   


Q ss_pred             -hcCCCEEEEeccccCCCHHHHHHHHHHHHhc------CcEEEEEecCcchhhhc
Q psy11400        250 -YHRPQFAILDECTSAVSVDVEGSMYEYCREV------GITLFTVSHRKSLWTHH  297 (298)
Q Consensus       250 -~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~------~~TiIiitH~l~~~~~~  297 (298)
                       +.+|+++||||||++||......+.+.+++.      +.|+|++||+++.+..+
T Consensus       128 ~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~  182 (198)
T cd03276         128 EVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS  182 (198)
T ss_pred             cccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence             5899999999999999999888888766541      35899999999877654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.73  E-value=3.5e-18  Score=148.02  Aligned_cols=186  Identities=16%  Similarity=0.187  Sum_probs=129.9

Q ss_pred             EEeeeeEe--cCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         82 GRLGITLG--LRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        82 ~~~~v~~~--~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .+.|+++-  .+++..+       +++++|+++++||+-++|        |.|  ||  +.+.       ++.+...-|.
T Consensus         5 DIrnL~IE~~TsqG~vK-------~VD~v~ltlnEGEi~GLV--------GESGSGKSLiAK~-------Ic~v~kdnW~   62 (330)
T COG4170           5 DIRNLTIEFKTSQGWVK-------AVDRVSMTLNEGEIRGLV--------GESGSGKSLIAKA-------ICGVNKDNWR   62 (330)
T ss_pred             cccceEEEEecCCCceE-------eeeeeeeeeccceeeeee--------ccCCCchhHHHHH-------HhcccccceE
Confidence            44555543  3445443       999999999999999999        999  99  6666       5222223333


Q ss_pred             cCCce-----ee---cc-------CCCcEEEEcCcCC--C-CCCCHHHHHcc--CC-cchh--hhhcCCCHHHHHHHHHH
Q psy11400        156 LFGGT-----VT---KP-------PRGKLFYVPQRPY--M-TLGTLRDQVIY--PH-TKED--MIQKGITDADLTEYLQK  212 (298)
Q Consensus       156 ~~~G~-----i~---~~-------~r~~i~~v~Q~~~--l-~~~tv~eni~~--~~-~~~~--~~~~~~~~~~i~~~l~~  212 (298)
                      .+...     |.   ..       ..+.|+++||+|.  + ++.++-.++.-  |. ....  .........++.+++..
T Consensus        63 vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHr  142 (330)
T COG4170          63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHR  142 (330)
T ss_pred             EEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHH
Confidence            33222     11   01       1245899999995  3 23455544432  21 1111  11223456678899999


Q ss_pred             cCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEe
Q psy11400        213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVS  288 (298)
Q Consensus       213 ~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiit  288 (298)
                      +|+.+..+-      ...++.+|.-||-|+|.||.|++.+|++||.||||+++++.+..++++++..    .|.||++++
T Consensus       143 VGIKdHkDI------M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s  216 (330)
T COG4170         143 VGIKDHKDI------MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS  216 (330)
T ss_pred             hccccHHHH------HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEc
Confidence            999764332      2235789999999999999999999999999999999999999999998764    489999999


Q ss_pred             cCcchhh
Q psy11400        289 HRKSLWT  295 (298)
Q Consensus       289 H~l~~~~  295 (298)
                      ||+..+.
T Consensus       217 ~Dl~~is  223 (330)
T COG4170         217 HDLQMIS  223 (330)
T ss_pred             ccHHHHH
Confidence            9997654

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.72  E-value=6.5e-18  Score=152.41  Aligned_cols=97  Identities=27%  Similarity=0.397  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHcCCchhhhh---cCCc-cccc---------ccCCCCChhHHHHHHHHHHHhcC----CCEEEEecccc
Q psy11400        201 ITDADLTEYLQKVQLGYILNR---EKGW-DTVA---------DWIDVLSGGEKQRVAMARLFYHR----PQFAILDECTS  263 (298)
Q Consensus       201 ~~~~~i~~~l~~~~l~~~~~~---~~g~-d~~~---------~~~~~LSgGqkQRlaiARaL~~~----P~iliLDEPTs  263 (298)
                      .+..++.+.++.+++......   ++|- +...         ..+.+||+|||||++||||++.+    |+++||||||+
T Consensus       109 ~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~  188 (247)
T cd03275         109 VSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDA  188 (247)
T ss_pred             ecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccc
Confidence            455677888899988532110   1110 1111         12478999999999999999864    89999999999


Q ss_pred             CCCHHHHHHHHHHHHhc---CcEEEEEecCcchhhhc
Q psy11400        264 AVSVDVEGSMYEYCREV---GITLFTVSHRKSLWTHH  297 (298)
Q Consensus       264 ~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~~~~  297 (298)
                      +||+.....+.+.+++.   |.|+|+|||+.+.+...
T Consensus       189 ~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~  225 (247)
T cd03275         189 ALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKA  225 (247)
T ss_pred             cCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhC
Confidence            99999999888877653   78999999998876643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.72  E-value=2.7e-17  Score=157.35  Aligned_cols=183  Identities=19%  Similarity=0.188  Sum_probs=136.5

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +..++++|++..-..+..        .++++||+|++||+++|.        |-+  |.  |+.+       |    .|+
T Consensus       255 ~~vL~V~~L~v~~~~~~~--------~v~~vs~~Vr~GEIvGIA--------GV~GNGQ~eL~ea-------i----sGl  307 (501)
T COG3845         255 EVVLEVEDLSVKDRRGVT--------AVKDVSFEVRAGEIVGIA--------GVAGNGQSELVEA-------I----SGL  307 (501)
T ss_pred             CeEEEEeeeEeecCCCCc--------eeeeeeeEEecCcEEEEE--------ecCCCCHHHHHHH-------H----hCC
Confidence            346899999987654433        899999999999999999        999  66  9888       8    999


Q ss_pred             cccCCceeeccC-------------CCcEEEEcCcCC----CCCCCHHHHHccCCcchh-hhhcC-CCHH----HHHHHH
Q psy11400        154 WPLFGGTVTKPP-------------RGKLFYVPQRPY----MTLGTLRDQVIYPHTKED-MIQKG-ITDA----DLTEYL  210 (298)
Q Consensus       154 ~~~~~G~i~~~~-------------r~~i~~v~Q~~~----l~~~tv~eni~~~~~~~~-~~~~~-~~~~----~i~~~l  210 (298)
                      .++.+|+|....             +..++|||.|..    ....|+.||+.+...... ..... .+..    ...+.+
T Consensus       308 r~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li  387 (501)
T COG3845         308 RKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELI  387 (501)
T ss_pred             CccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHH
Confidence            988889985321             246999999873    457799999986542110 00111 2222    334555


Q ss_pred             HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEE
Q psy11400        211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTV  287 (298)
Q Consensus       211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIii  287 (298)
                      +.+++..     .+   ......+||||.+||+-+||-|..+|++||+.+||-|||....+.+.+.+.+   .|+.|++|
T Consensus       388 ~~fdVr~-----~~---~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi  459 (501)
T COG3845         388 EEFDVRA-----PS---PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI  459 (501)
T ss_pred             HHcCccC-----CC---CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            5555431     01   1113568999999999999999999999999999999999998888876543   59999999


Q ss_pred             ecCcchhh
Q psy11400        288 SHRKSLWT  295 (298)
Q Consensus       288 tH~l~~~~  295 (298)
                      |-+++.+.
T Consensus       460 S~dLDEil  467 (501)
T COG3845         460 SEDLDEIL  467 (501)
T ss_pred             ehhHHHHH
Confidence            99998653

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.70  E-value=3.9e-18  Score=143.87  Aligned_cols=168  Identities=20%  Similarity=0.179  Sum_probs=125.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||+...             -|-.+|.++..||++-++        |||  ||  |+-.       +    +|+. 
T Consensus         3 l~qln~v~~~t-------------RL~plS~qv~aGe~~Hli--------GPNGaGKSTLLA~-------l----AGm~-   49 (248)
T COG4138           3 LMQLNDVAEST-------------RLGPLSGEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGMT-   49 (248)
T ss_pred             eeeeccccccc-------------cccccccccccceEEEEE--------CCCCccHHHHHHH-------H----hCCC-
Confidence            46778877654             245589999999999999        999  99  5444       4    8875 


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCC-CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      |.+|+|...           ..++-+|+.|+.. .|.+.|+..+.+....      ......+.+++..+++++.+.|. 
T Consensus        50 ~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~------~~~a~~i~~i~~~L~l~DKL~Rs-  122 (248)
T COG4138          50 SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD------KTRTELLNDVAGALALDDKLGRS-  122 (248)
T ss_pred             CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch------HHHHHHHHHHHhhhcccchhhhh-
Confidence            688888532           1345678888764 5667888877664321      11235678888888888766552 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhc-----CC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYH-----RP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~-----~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                              .+.|||||-|||-+|-.+++     ||  ++|++|||.++||..-+..+.+++.+   .|.+||+++||++-
T Consensus       123 --------~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh  194 (248)
T COG4138         123 --------TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH  194 (248)
T ss_pred             --------hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh
Confidence                    57899999999999988874     34  69999999999999887777666544   59999999999985


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      .-
T Consensus       195 TL  196 (248)
T COG4138         195 TL  196 (248)
T ss_pred             HH
Confidence            43

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.68  E-value=3.7e-16  Score=162.80  Aligned_cols=67  Identities=27%  Similarity=0.337  Sum_probs=59.8

Q ss_pred             cCCCCChhHHHHHHHHHHHhc---CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhhc
Q psy11400        231 WIDVLSGGEKQRVAMARLFYH---RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~---~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~~  297 (298)
                      ...+|||||+||++||++|+.   +|+++||||||++||+.....+.+.+++   .|.|+|+|+|+++.++..
T Consensus       825 ~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~a  897 (924)
T TIGR00630       825 PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTA  897 (924)
T ss_pred             ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence            467999999999999999997   5999999999999999999988887764   489999999999987643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.67  E-value=2.1e-16  Score=148.37  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=124.5

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcC--
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRP--  176 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~--  176 (298)
                      .+++|+||+|++|+.++|+        |+|  ||  +++++++.....   ....|.|++|.+..+...--+.+|-+-  
T Consensus       397 yvlr~vNL~ikpGdvvaVv--------GqSGaGKttllRmi~G~~~~~---~ee~y~p~sg~v~vp~nt~~a~iPge~Ep  465 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVV--------GQSGAGKTTLLRMILGAQKGR---GEEKYRPDSGKVEVPKNTVSALIPGEYEP  465 (593)
T ss_pred             eeeeceeeEecCCCeEEEE--------ecCCCCcchHHHHHHHHhhcc---cccccCCCCCceeccccchhhccCccccc
Confidence            5899999999999999999        999  99  888844432222   134678999999876555445666543  


Q ss_pred             CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400        177 YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA  256 (298)
Q Consensus       177 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il  256 (298)
                      .+-.-|+.|++.--         .-+.....++++.+|+.+-.-..       ...++||-|||.|+.||+++..+|.++
T Consensus       466 ~f~~~tilehl~s~---------tGD~~~AveILnraGlsDAvlyR-------r~f~ELStGQKeR~KLAkllaerpn~~  529 (593)
T COG2401         466 EFGEVTILEHLRSK---------TGDLNAAVEILNRAGLSDAVLYR-------RKFSELSTGQKERAKLAKLLAERPNVL  529 (593)
T ss_pred             ccCchhHHHHHhhc---------cCchhHHHHHHHhhccchhhhhh-------ccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence            23333777776421         11223456789999997633211       135799999999999999999999999


Q ss_pred             EEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400        257 ILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       257 iLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +.||-.|.||+.+...+    .++.++.+.|++++|||.+..+.
T Consensus       530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~A  573 (593)
T COG2401         530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA  573 (593)
T ss_pred             EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence            99999999999876554    55666779999999999988764

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.65  E-value=1.3e-16  Score=151.25  Aligned_cols=146  Identities=23%  Similarity=0.271  Sum_probs=105.1

Q ss_pred             EeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------------------
Q psy11400        112 VRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------------------  164 (298)
Q Consensus       112 i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------------------  164 (298)
                      .++|++++|+        |+|  ||  .+++       |    +|-..|.=|+...+                       
T Consensus        97 pr~G~V~Gil--------G~NGiGKsTalkI-------L----aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~  157 (591)
T COG1245          97 PRPGKVVGIL--------GPNGIGKSTALKI-------L----AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY  157 (591)
T ss_pred             CCCCcEEEEE--------cCCCccHHHHHHH-------H----hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence            5789999999        999  99  7787       7    77776666653211                       


Q ss_pred             -CCCcEEEEcCc----CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH
Q psy11400        165 -PRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE  239 (298)
Q Consensus       165 -~r~~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq  239 (298)
                       ..-++..=||-    |-.+.|++.|-+.-..          .....+++.+.++|...+++.         .++|||||
T Consensus       158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d----------e~g~~devve~l~L~nvl~r~---------v~~LSGGE  218 (591)
T COG1245         158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVD----------ERGKFDEVVERLGLENVLDRD---------VSELSGGE  218 (591)
T ss_pred             cCCcceecchHHHHHHHHHhcchHHHHHHhhh----------hcCcHHHHHHHhcchhhhhhh---------hhhcCchH
Confidence             01122333332    3345677777654211          112467778888998888774         67999999


Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      -||+|||.|++++.+++++|||||-||...+-...+.+++   .+++||+|.||+...-
T Consensus       219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD  277 (591)
T COG1245         219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLD  277 (591)
T ss_pred             HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHH
Confidence            9999999999999999999999999998755444444333   2799999999998654

>KOG2355|consensus

Probab=99.56  E-value=3.3e-14  Score=122.98  Aligned_cols=168  Identities=19%  Similarity=0.265  Sum_probs=112.0

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +..|++.++.|+|+...+        ++.|+|++++.|....+|        |.|  ||  |+++       +    +|=
T Consensus        11 ~~aievsgl~f~y~~~dP--------~~~Dfnldlp~gsRcLlV--------GaNGaGKtTlLKi-------L----sGK   63 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDP--------IFFDFNLDLPAGSRCLLV--------GANGAGKTTLLKI-------L----SGK   63 (291)
T ss_pred             cceEEEeccEEecccCCc--------eEEEEeeccCCCceEEEE--------ecCCCchhhhHHH-------h----cCc
Confidence            357999999999987665        999999999999999999        999  99  8888       5    442


Q ss_pred             cccCCceeeccC-----------CCcEEEEcCc-----------CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHH
Q psy11400        154 WPLFGGTVTKPP-----------RGKLFYVPQR-----------PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ  211 (298)
Q Consensus       154 ~~~~~G~i~~~~-----------r~~i~~v~Q~-----------~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~  211 (298)
                      --...|.|....           .....|+--+           |.--..++.+. .++..       ....++-+++++
T Consensus        64 hmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~m-ifgV~-------g~dp~Rre~LI~  135 (291)
T KOG2355|consen   64 HMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHM-IFGVG-------GDDPERREKLID  135 (291)
T ss_pred             ccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHH-Hhhcc-------CCChhHhhhhhh
Confidence            222223332110           1112222211           11111122221 12110       111122233333


Q ss_pred             HcCCchhhhhcCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEE
Q psy11400        212 KVQLGYILNREKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFT  286 (298)
Q Consensus       212 ~~~l~~~~~~~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIi  286 (298)
                      .+.++            .. +.+.+|-|||+||.|+.-|++.=++|+|||-|--||...+..+++.+++    +|.||+.
T Consensus       136 iLDId------------l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVY  203 (291)
T KOG2355|consen  136 ILDID------------LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVY  203 (291)
T ss_pred             heecc------------ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence            33332            23 3478999999999999999999999999999999999999999988875    5999999


Q ss_pred             EecCcc
Q psy11400        287 VSHRKS  292 (298)
Q Consensus       287 itH~l~  292 (298)
                      .||-.+
T Consensus       204 ATHIFD  209 (291)
T KOG2355|consen  204 ATHIFD  209 (291)
T ss_pred             Eeeecc
Confidence            999643

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.54  E-value=1.2e-14  Score=151.82  Aligned_cols=66  Identities=26%  Similarity=0.301  Sum_probs=59.5

Q ss_pred             cCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ...+|||||+|||+|||||..+|  +++||||||++||+.....+.+.+++   .|.|||+|+|+++.+..
T Consensus       486 ~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~  556 (943)
T PRK00349        486 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA  556 (943)
T ss_pred             chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            46899999999999999999997  99999999999999999888887654   58999999999987753

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.54  E-value=1.6e-14  Score=150.62  Aligned_cols=66  Identities=23%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             cCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ...+|||||+|||.|||||..+|  +++||||||+|||+.....+.+.+++   .|.|||+|+|+++.++.
T Consensus       484 ~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~  554 (924)
T TIGR00630       484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA  554 (924)
T ss_pred             CcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence            47899999999999999999986  89999999999999999888887654   58999999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.52  E-value=4.1e-14  Score=123.70  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH-H---HHhcCcEEEEEecCcchhhhc
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE-Y---CREVGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~-~---l~~~~~TiIiitH~l~~~~~~  297 (298)
                      .+++|+||||++.+++++ .+|+++++||||+++|+.....+.. .   +++.+.|+|++||+.++..++
T Consensus        89 ~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~  157 (200)
T cd03280          89 LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYA  157 (200)
T ss_pred             cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHH
Confidence            568999999999999885 8999999999999999988776642 3   334589999999987665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0066|consensus

Probab=99.51  E-value=2.5e-14  Score=135.34  Aligned_cols=172  Identities=22%  Similarity=0.267  Sum_probs=114.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++|.+++-. +..        ++.|-||.|-.|...++|        |||  ||  |++.       +.   .+-  
T Consensus       264 DIKiEnF~ISA~-Gk~--------LFvnA~L~Iv~GRRYGLV--------GPNG~GKTTLLkH-------Ia---~Ra--  314 (807)
T KOG0066|consen  264 DIKIENFDISAQ-GKL--------LFVNASLTIVYGRRYGLV--------GPNGMGKTTLLKH-------IA---ARA--  314 (807)
T ss_pred             cceeeeeeeecc-cce--------eeeccceEEEecceeccc--------CCCCCchHHHHHH-------HH---hhh--
Confidence            588999888763 444        789999999999999999        999  88  7776       41   110  


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcc-----h------hhhhcC---------------------CCH
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTK-----E------DMIQKG---------------------ITD  203 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-----~------~~~~~~---------------------~~~  203 (298)
                           ...++.-.+-++-|+......|..+-++-....     +      ..+..+                     ...
T Consensus       315 -----laIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAE  389 (807)
T KOG0066|consen  315 -----LAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAE  389 (807)
T ss_pred             -----ccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccch
Confidence                 111222335666666544333333333211100     0      000000                     012


Q ss_pred             HHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCc
Q psy11400        204 ADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI  282 (298)
Q Consensus       204 ~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~  282 (298)
                      .+.+++|.-+|.+.- .++         +...+|||-|-||++||||+..|-+|+|||||+.||....-++-.+++.+.+
T Consensus       390 arARRILAGLGFskEMQ~r---------Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK  460 (807)
T KOG0066|consen  390 ARARRILAGLGFSKEMQER---------PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK  460 (807)
T ss_pred             hHHHHHHhhcCCChhHhcC---------CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh
Confidence            233334444444321 122         3568999999999999999999999999999999999988889999998899


Q ss_pred             EEEEEecCcchh
Q psy11400        283 TLFTVSHRKSLW  294 (298)
Q Consensus       283 TiIiitH~l~~~  294 (298)
                      |+++|||+.++.
T Consensus       461 TLLIVSHDQgFL  472 (807)
T KOG0066|consen  461 TLLIVSHDQGFL  472 (807)
T ss_pred             eeEEEecccchH
Confidence            999999998754

>TIGR00606 rad50 rad50

Probab=99.51  E-value=6.5e-14  Score=152.31  Aligned_cols=108  Identities=20%  Similarity=0.149  Sum_probs=85.4

Q ss_pred             CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh-hcCCcccccccCCCCChhHHH------HHHHHHHHh
Q psy11400        178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN-REKGWDTVADWIDVLSGGEKQ------RVAMARLFY  250 (298)
Q Consensus       178 l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~d~~~~~~~~LSgGqkQ------RlaiARaL~  250 (298)
                      .|.||+++||.+ ..       ..+++  ..+++..+...+.. .+.| ++..+....|||||||      |++|||||+
T Consensus      1153 ~~~~~~~~~i~~-~~-------~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606      1153 TYRGQDIEYIEI-RS-------DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred             HcCccHHHHhhc-CC-------CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHh
Confidence            478999999998 31       22333  46666677766554 4667 7777766799999999      999999999


Q ss_pred             cCCCEEEEeccccCCCHHHHHHHHHHHHh--------cCcEEEEEecCcchhhh
Q psy11400        251 HRPQFAILDECTSAVSVDVEGSMYEYCRE--------VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~--------~~~TiIiitH~l~~~~~  296 (298)
                      .+|++++|||||++||+.....+.+.+..        .|.|+|+|||++..+..
T Consensus      1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            99999999999999999988877665432        27899999999987653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.48  E-value=1.2e-13  Score=122.22  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             cCCCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-C-cEEEEEecCcchh
Q psy11400        231 WIDVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-G-ITLFTVSHRKSLW  294 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~-~TiIiitH~l~~~  294 (298)
                      .+.+||+|||||+.+|+++    +.+|+++|+||||++||+.....+.+.+.+   . + .|+|++||++...
T Consensus       123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~  195 (213)
T cd03277         123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG  195 (213)
T ss_pred             chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC
Confidence            5679999999998877554    589999999999999999999988887654   2 4 4799999987543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.47  E-value=7.4e-14  Score=118.13  Aligned_cols=63  Identities=27%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      .||+||+||+++||+|..    +|+++++|||++++|+.....+.+.+.+   .+.++|++||+++....
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~  146 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL  146 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence            599999999999999987    7899999999999999988777665543   26899999999987654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.46  E-value=1.1e-13  Score=151.00  Aligned_cols=67  Identities=24%  Similarity=0.300  Sum_probs=59.8

Q ss_pred             ccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        230 DWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       230 ~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ....+|||||+|||+|||||..+|  +++||||||++||+...+.+.+.+++   .|.|||+|+||+++++.
T Consensus       472 R~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~  543 (1809)
T PRK00635        472 RALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISL  543 (1809)
T ss_pred             CchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence            356899999999999999999999  89999999999999999988877664   48999999999986654

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.43  E-value=4e-13  Score=115.59  Aligned_cols=62  Identities=26%  Similarity=0.420  Sum_probs=55.5

Q ss_pred             CChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        235 LSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       235 LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ||+|||||++|||+++    .+|+++++||||++||+.....+.+.+++   .+.|+|++||+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~  163 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFEN  163 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence            9999999999999996    69999999999999999999888887764   36899999999987654

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.42  E-value=7.1e-14  Score=124.33  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=87.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEE-EEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLF-YVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~-~v~Q~~~l  178 (298)
                      +.+|++++++++++++|+        |||  ||  +++.       +    + +..         .-.++| |||.+.. 
T Consensus        19 v~~~~~~~~~~~~~~~l~--------G~n~~GKstll~~-------i----~-~~~---------~la~~g~~vpa~~~-   68 (222)
T cd03285          19 IPNDVTLTRGKSRFLIIT--------GPNMGGKSTYIRQ-------I----G-VIV---------LMAQIGCFVPCDSA-   68 (222)
T ss_pred             EEeeEEEeecCCeEEEEE--------CCCCCChHHHHHH-------H----H-HHH---------HHHHhCCCcCcccE-
Confidence            889999999999999999        999  99  7887       5    2 110         011233 4554421 


Q ss_pred             CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHH--hcCCCEE
Q psy11400        179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLF--YHRPQFA  256 (298)
Q Consensus       179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL--~~~P~il  256 (298)
                               .++.              +++++..+++.+..            ...+|.|++|++.+++++  +.+|+++
T Consensus        69 ---------~~~~--------------~~~il~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLv  113 (222)
T cd03285          69 ---------DIPI--------------VDCILARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLI  113 (222)
T ss_pred             ---------EEec--------------cceeEeeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEE
Confidence                     0100              11223333443221            247999999999999999  8999999


Q ss_pred             EEecc---ccCCCHHHHHHHH-HHHHh-cCcEEEEEecCcchhh
Q psy11400        257 ILDEC---TSAVSVDVEGSMY-EYCRE-VGITLFTVSHRKSLWT  295 (298)
Q Consensus       257 iLDEP---Ts~LD~~~~~~i~-~~l~~-~~~TiIiitH~l~~~~  295 (298)
                      |||||   |+++|+....... +.+.+ .+.++|++||..++.+
T Consensus       114 LLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~  157 (222)
T cd03285         114 IIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTA  157 (222)
T ss_pred             EEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHH
Confidence            99999   9999997665433 55554 4899999999755443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.37  E-value=1e-12  Score=120.48  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhc
Q psy11400        232 IDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHH  297 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~  297 (298)
                      ...|||||+||+++|++++.    +|++++|||||++||+.....+.+.+++.  +.|+|++||+++.....
T Consensus       168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~  239 (276)
T cd03241         168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMA  239 (276)
T ss_pred             hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhc
Confidence            44699999999999997654    99999999999999999999999888753  78999999999876543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.31  E-value=3.1e-12  Score=127.95  Aligned_cols=65  Identities=25%  Similarity=0.338  Sum_probs=57.4

Q ss_pred             CCCCChhHHHHHHHHHHHh----------cCCCEEEEeccc-cCCCHHHHHHHHHHHHh-cCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFY----------HRPQFAILDECT-SAVSVDVEGSMYEYCRE-VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~----------~~P~iliLDEPT-s~LD~~~~~~i~~~l~~-~~~TiIiitH~l~~~~~  296 (298)
                      +..||||||||++||+||+          .+|+++|||||| ++||+.....+.+.+++ .+.|+|+|||+......
T Consensus       466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~  542 (562)
T PHA02562        466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK  542 (562)
T ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh
Confidence            3689999999999999987          599999999998 78999999999988877 47899999999876543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.30  E-value=2.9e-12  Score=112.11  Aligned_cols=64  Identities=13%  Similarity=0.025  Sum_probs=49.7

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHH----HHHHhcCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~----~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      .+.+|.+++| +..+.+++.+|+++||||||+++|+.....+.    +.+.+.+.++|++||+.+....
T Consensus        89 ~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~  156 (202)
T cd03243          89 RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADL  156 (202)
T ss_pred             ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence            4567777776 66667888999999999999999997665443    3344458999999999887654

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.29  E-value=3.7e-12  Score=111.94  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=85.2

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEE-EEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLF-YVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~-~v~Q~~~l  178 (298)
                      +.+|++|++++|+.++|+        |||  ||  +++.       +    +++.-          ..++| +||-..  
T Consensus        18 v~~~~~~~~~~~~~~~l~--------G~n~~GKstll~~-------i----~~~~~----------la~~G~~vpa~~--   66 (204)
T cd03282          18 IPNDIYLTRGSSRFHIIT--------GPNMSGKSTYLKQ-------I----ALLAI----------MAQIGCFVPAEY--   66 (204)
T ss_pred             EEeeeEEeeCCCcEEEEE--------CCCCCCHHHHHHH-------H----HHHHH----------HHHcCCCcchhh--
Confidence            899999999999999999        999  99  7887       5    43310          01122 222111  


Q ss_pred             CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy11400        179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL  258 (298)
Q Consensus       179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliL  258 (298)
                      ...++.|+|....                      +..+..         ....+++|+|++|+ ..+.+++.+|++++|
T Consensus        67 ~~l~~~d~I~~~~----------------------~~~d~~---------~~~~S~fs~e~~~~-~~il~~~~~~~lvll  114 (204)
T cd03282          67 ATLPIFNRLLSRL----------------------SNDDSM---------ERNLSTFASEMSET-AYILDYADGDSLVLI  114 (204)
T ss_pred             cCccChhheeEec----------------------CCcccc---------chhhhHHHHHHHHH-HHHHHhcCCCcEEEe
Confidence            1123444443211                      111101         11246799999975 555668899999999


Q ss_pred             eccccCCCHHHHH----HHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        259 DECTSAVSVDVEG----SMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       259 DEPTs~LD~~~~~----~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      |||++|+|+....    .+.+.+.+.+.++|++||+.+.+..
T Consensus       115 DE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         115 DELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            9999999986422    3444555569999999999887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.29  E-value=3.4e-12  Score=111.72  Aligned_cols=128  Identities=12%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc-cCCceeeccCCCcEEEEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP-LFGGTVTKPPRGKLFYVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~-~~~G~i~~~~r~~i~~v~Q~~~l  178 (298)
                      +++|++|+.  |++++|+        |||  ||  +++.       +    ++... ...|.-. +. .  .+++|...+
T Consensus        16 v~n~i~l~~--g~~~~lt--------GpNg~GKSTllr~-------i----~~~~~l~~~G~~v-~a-~--~~~~q~~~l   70 (199)
T cd03283          16 VANDIDMEK--KNGILIT--------GSNMSGKSTFLRT-------I----GVNVILAQAGAPV-CA-S--SFELPPVKI   70 (199)
T ss_pred             ecceEEEcC--CcEEEEE--------CCCCCChHHHHHH-------H----HHHHHHHHcCCEE-ec-C--ccCcccceE
Confidence            778887765  7999999        999  99  8888       6    44321 1233211 11 1  356674334


Q ss_pred             C-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400        179 T-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI  257 (298)
Q Consensus       179 ~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~ili  257 (298)
                      | ..|+.||+..+....     .....++.++++.++                                   ..+|+++|
T Consensus        71 ~~~~~~~d~l~~~~s~~-----~~e~~~~~~iL~~~~-----------------------------------~~~p~lll  110 (199)
T cd03283          71 FTSIRVSDDLRDGISYF-----YAELRRLKEIVEKAK-----------------------------------KGEPVLFL  110 (199)
T ss_pred             EEeccchhccccccChH-----HHHHHHHHHHHHhcc-----------------------------------CCCCeEEE
Confidence            3 568899887754210     001122333333321                                   07999999


Q ss_pred             EeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400        258 LDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       258 LDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +||||+++|+.....+    .+.+.+.+.|+|++||+++.+..
T Consensus       111 lDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~  153 (199)
T cd03283         111 LDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADL  153 (199)
T ss_pred             EecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence            9999999999866543    23334458999999999987764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR00634 recN DNA repair protein RecN

Probab=99.23  E-value=1.5e-11  Score=123.39  Aligned_cols=64  Identities=25%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             CCCChhHHHHHHHHHHHhcC----CCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLFYHR----PQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~----P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      ..|||||+||++||++++..    |+++||||||+|||+.....+.+.+++  .+.|||+|||++..+..
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~  508 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAH  508 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence            46899999999999999985    699999999999999999988888775  38999999999987654

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10869 recombination and repair protein; Provisional

Probab=99.22  E-value=2.3e-11  Score=121.61  Aligned_cols=63  Identities=24%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      .|||||+||++||++++.    +|+++|||||++|||..+...+.+.+++  .+.+||+|||++..+.+
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~  498 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC  498 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence            479999999999999997    5899999999999999999999888876  36899999999987654

>KOG0063|consensus

Probab=99.19  E-value=4.1e-11  Score=113.41  Aligned_cols=155  Identities=19%  Similarity=0.210  Sum_probs=113.1

Q ss_pred             ceeeeeEEEeCCc-----EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce-eeccCCCcEEEEc
Q psy11400        104 SFFDYMFGVRGAL-----NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT-VTKPPRGKLFYVP  173 (298)
Q Consensus       104 ~l~~isl~i~~g~-----~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~-i~~~~r~~i~~v~  173 (298)
                      .+-++.|.|+.|+     ++..+        |.|  ||  ++++       +    +|..+|++|. +.   .-.++|=|
T Consensus       351 ~~g~F~L~i~~GefsdSeiivml--------gEngtgkTTfi~m-------l----ag~~~pd~~~e~p---~lnVSykp  408 (592)
T KOG0063|consen  351 TVGDFCLCIKVGEFSDSEIIVML--------GENGTGKTTFIRM-------L----AGRLKPDEGGEIP---VLNVSYKP  408 (592)
T ss_pred             eeeeEEEEEeecccCCceeEEEE--------ccCCcchhHHHHH-------H----hcCCCCCccCccc---ccceeccc
Confidence            6788999999986     56777        999  99  8888       7    8887887764 42   22588999


Q ss_pred             CcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400        174 QRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR  252 (298)
Q Consensus       174 Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~  252 (298)
                      |...- +.+|+|.-+.--..     .......-+.++++-+.+++..++.         ..+|||||+||+++|.+|-..
T Consensus       409 qkispK~~~tvR~ll~~kIr-----~ay~~pqF~~dvmkpL~ie~i~dqe---------vq~lSggelQRval~KOGGKp  474 (592)
T KOG0063|consen  409 QKISPKREGTVRQLLHTKIR-----DAYMHPQFVNDVMKPLQIENIIDQE---------VQGLSGGELQRVALALCLGKP  474 (592)
T ss_pred             cccCccccchHHHHHHHHhH-----hhhcCHHHHHhhhhhhhHHHHHhHH---------hhcCCchhhHHHHHHHhcCCC
Confidence            97643 56788875531110     0112234456677777777776653         678999999999999999999


Q ss_pred             CCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchh
Q psy11400        253 PQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       253 P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~  294 (298)
                      .++.+.|||.+-||.+.+...    .+.+-..++|-.+|.|+.-..
T Consensus       475 AdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIma  520 (592)
T KOG0063|consen  475 ADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA  520 (592)
T ss_pred             CceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH
Confidence            999999999999998765433    333334578999999986543

>KOG0065|consensus

Probab=99.15  E-value=3e-11  Score=127.15  Aligned_cols=164  Identities=18%  Similarity=0.194  Sum_probs=120.4

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc---CCceeec--------cCCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL---FGGTVTK--------PPRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~---~~G~i~~--------~~r~~  168 (298)
                      +++|++.-+++|+.+.+.        ||-  ||  |++.       +    +|-.+-   ..|+|+.        ..++.
T Consensus       130 il~~~sg~~~pg~m~lvL--------G~pgsG~ttllka-------l----~g~~~~~~~~~~~isy~G~~~~e~~~~~~  190 (1391)
T KOG0065|consen  130 ILKDISGIIKPGEMTLVL--------GPPGSGKTTLLKA-------L----AGKLDNFLKSSGEITYNGHDLKEFVPKKT  190 (1391)
T ss_pred             eecCcceeEcCCceEEEe--------cCCCCchHHHHHH-------H----hCCCcccccCCCceeECCCcccccccCce
Confidence            899999999999999999        988  99  7777       5    222211   1234432        12567


Q ss_pred             EEEEcCcCC-CCCCCHHHHHccCCcchhh---hhcCCCH-H----HHHHHHHHcCCchhhhhcCCcccccc--cCCCCCh
Q psy11400        169 LFYVPQRPY-MTLGTLRDQVIYPHTKEDM---IQKGITD-A----DLTEYLQKVQLGYILNREKGWDTVAD--WIDVLSG  237 (298)
Q Consensus       169 i~~v~Q~~~-l~~~tv~eni~~~~~~~~~---~~~~~~~-~----~i~~~l~~~~l~~~~~~~~g~d~~~~--~~~~LSg  237 (298)
                      ++|.+|+.. ++..||+|-+-|.......   .. +.++ +    ..+.+++.+||++-.      ||.++  ...-.||
T Consensus       191 ~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~-~~~R~e~~~~~~d~~lkilGL~~~~------dT~VGnd~~RGvSG  263 (1391)
T KOG0065|consen  191 VAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD-EVSRREKLAAMTDYLLKILGLDHCA------DTLVGNDMVRGVSG  263 (1391)
T ss_pred             EEeccccccccceeEEeehhhHHHhccCCccccc-cccHHHHHHHHHHHHHHHhCchhhc------cceecccccccccC
Confidence            999999875 4567999988775432111   11 1222 2    244778888987643      45443  4568999


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcch
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSL  293 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~  293 (298)
                      |||+||++|-+++.+|+++++||+|.|||..+.-++.+.+++    .+.|.+++-|+.+-
T Consensus       264 GerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~  323 (1391)
T KOG0065|consen  264 GERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSP  323 (1391)
T ss_pred             cccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCCh
Confidence            999999999999999999999999999999988888877765    37888888887764

>TIGR00618 sbcc exonuclease SbcC

Probab=99.12  E-value=1.1e-10  Score=124.76  Aligned_cols=66  Identities=15%  Similarity=0.055  Sum_probs=58.7

Q ss_pred             cCCCCChhHHHHHHHHHHHhc----------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYH----------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~----------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      .+.+|||||++|++||+||+.          +|++|||||||++||+.....+.+.+++   .|++|++|||++.+...
T Consensus       947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618       947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence            467999999999999999986          7999999999999999999888877654   48999999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.12  E-value=2.3e-10  Score=115.51  Aligned_cols=84  Identities=31%  Similarity=0.417  Sum_probs=66.8

Q ss_pred             HHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh---c
Q psy11400        207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE---V  280 (298)
Q Consensus       207 ~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~---~  280 (298)
                      .+.|..+||.++.        +.....+|||||-|||-||.-|..+.   -++||||||.||-..-.+++++.+.+   .
T Consensus       803 LqtL~dVGLgYi~--------LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~  874 (935)
T COG0178         803 LQTLVDVGLGYIK--------LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK  874 (935)
T ss_pred             HHHHHHcCcceEe--------cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            3445566665431        12235799999999999999999988   89999999999988777777766554   5


Q ss_pred             CcEEEEEecCcchhhhcC
Q psy11400        281 GITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       281 ~~TiIiitH~l~~~~~~~  298 (298)
                      |-|||+|.|+++.++..|
T Consensus       875 GnTViVIEHNLdVIk~AD  892 (935)
T COG0178         875 GNTVIVIEHNLDVIKTAD  892 (935)
T ss_pred             CCEEEEEecccceEeecC
Confidence            999999999999988654

>TIGR01069 mutS2 MutS2 family protein

Probab=99.12  E-value=9e-10  Score=113.91  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      .+++|+|++|+..|++++ .+|+++|||||++|+|+.....+    .+.+.+.++++|++||..++..
T Consensus       383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            468999999999999887 79999999999999999766554    3444456899999999987644

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.07  E-value=3.4e-10  Score=100.29  Aligned_cols=52  Identities=23%  Similarity=0.234  Sum_probs=39.6

Q ss_pred             HHHHHH--hcCCCEEEEecc---ccCCCHHHH-HHHHHHHHhc-CcEEEEEecCcchhh
Q psy11400        244 AMARLF--YHRPQFAILDEC---TSAVSVDVE-GSMYEYCREV-GITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL--~~~P~iliLDEP---Ts~LD~~~~-~~i~~~l~~~-~~TiIiitH~l~~~~  295 (298)
                      .+++++  +.+|++++||||   |+++|.... ..+.+.+.+. +.|+|++||+.++..
T Consensus        99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~  157 (216)
T cd03284          99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE  157 (216)
T ss_pred             HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence            344444  469999999999   999998653 4566766665 899999999976543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK03918 chromosome segregation protein; Provisional

Probab=99.05  E-value=2.9e-10  Score=119.49  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=55.4

Q ss_pred             cCCCCChhHHH------HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      .+..|||||+|      |++||++++.+|+++||||||++||+.....+.+++..   .+.|+|+|||+..+...
T Consensus       785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~  859 (880)
T PRK03918        785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDA  859 (880)
T ss_pred             ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHh
Confidence            35689999999      55666788899999999999999999998888887654   36799999999876543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.05  E-value=3.4e-10  Score=120.96  Aligned_cols=64  Identities=23%  Similarity=0.214  Sum_probs=56.7

Q ss_pred             cCCCCChhHHHHHHHHHHHhc--------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYH--------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLW  294 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~--------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~  294 (298)
                      .+.+|||||+|+++||+||+.        +|+++||||||++||+.+...+++.+..   .|+||++|||...+.
T Consensus       946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246        946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK 1020 (1047)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHH
Confidence            468999999999999999996        8999999999999999999888877654   589999999976654

>PRK01156 chromosome segregation protein; Provisional

Probab=99.05  E-value=3.7e-10  Score=119.06  Aligned_cols=67  Identities=28%  Similarity=0.406  Sum_probs=56.3

Q ss_pred             cCCCCChhHHHHHHH------HHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hc-C-cEEEEEecCcchhhhc
Q psy11400        231 WIDVLSGGEKQRVAM------ARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EV-G-ITLFTVSHRKSLWTHH  297 (298)
Q Consensus       231 ~~~~LSgGqkQRlai------ARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~-~-~TiIiitH~l~~~~~~  297 (298)
                      .+..|||||++|++|      ||+|+.+|++++|||||++||+.....+.+.+.    .. + .|+|+|||+...+...
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~  876 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA  876 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence            367899999999975      599999999999999999999998888877654    22 2 4899999999877643

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.03  E-value=3.3e-10  Score=121.63  Aligned_cols=66  Identities=27%  Similarity=0.388  Sum_probs=57.7

Q ss_pred             cCCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      .+..||||||||++||++++    .+|+++||||||++||+.....+.++++..  +.++|+|||++.....
T Consensus      1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~ 1157 (1179)
T TIGR02168      1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEV 1157 (1179)
T ss_pred             cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHH
Confidence            46789999999999999984    677999999999999999999888887653  6789999999987653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.00  E-value=7.1e-10  Score=101.41  Aligned_cols=60  Identities=15%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400        233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKS  292 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~  292 (298)
                      ..+|+||||++++||+|+         .+|++++|||||++||+.....+.+.+++.+.++|+++|...
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~  250 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLAD  250 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchh
Confidence            458999999999999985         799999999999999999999999999876655555555443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0063|consensus

Probab=98.97  E-value=2e-10  Score=108.81  Aligned_cols=83  Identities=27%  Similarity=0.331  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cC
Q psy11400        205 DLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VG  281 (298)
Q Consensus       205 ~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~  281 (298)
                      ...++++.+.|+...++.         ...||||+-||.+||.+.+++.++.++|||.|.||...+-+....++.   .+
T Consensus       193 ~~~~~~~~~~L~~~~~re---------~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~  263 (592)
T KOG0063|consen  193 NKEEVCDQLDLNNLLDRE---------VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPD  263 (592)
T ss_pred             cHHHHHHHHHHhhHHHhh---------hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCC
Confidence            345666777777666553         578999999999999999999999999999999998766544444433   47


Q ss_pred             cEEEEEecCcchhhh
Q psy11400        282 ITLFTVSHRKSLWTH  296 (298)
Q Consensus       282 ~TiIiitH~l~~~~~  296 (298)
                      .=+|+|.||++..-+
T Consensus       264 ~YiIVVEHDLsVLDy  278 (592)
T KOG0063|consen  264 RYIIVVEHDLSVLDY  278 (592)
T ss_pred             CeEEEEEeechHHHh
Confidence            889999999997643

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.96  E-value=2.1e-10  Score=99.04  Aligned_cols=61  Identities=20%  Similarity=0.244  Sum_probs=45.7

Q ss_pred             CCCCChhHHHHHHHHHHHhc--CCCEEEEeccccCCCHHHHHHH----HHHHHh-cCcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYH--RPQFAILDECTSAVSVDVEGSM----YEYCRE-VGITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~--~P~iliLDEPTs~LD~~~~~~i----~~~l~~-~~~TiIiitH~l~~~~  295 (298)
                      .+++|+|++|.   ++++..  +|+++|+|||++++|+.....+    .+.+.+ .+.++|++||+.++.+
T Consensus        59 ~s~fs~~~~~l---~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~  126 (185)
T smart00534       59 LSTFMVEMKET---ANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK  126 (185)
T ss_pred             ccHHHHHHHHH---HHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence            46789888874   444444  9999999999999999855443    333344 3889999999987654

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.90  E-value=1.3e-09  Score=98.52  Aligned_cols=75  Identities=20%  Similarity=0.234  Sum_probs=60.4

Q ss_pred             cCCcccccc-cCCCCChhH--------HHHHHHHHHHhcCCCEEEEeccccCCCHHHHH--HHHHHHHhcCcEEEEEecC
Q psy11400        222 EKGWDTVAD-WIDVLSGGE--------KQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREVGITLFTVSHR  290 (298)
Q Consensus       222 ~~g~d~~~~-~~~~LSgGq--------kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~--~i~~~l~~~~~TiIiitH~  290 (298)
                      +.++++... .+..+|||+        +||+++||++..+++|.+|  ||+.+|..++.  -+.+.++..+.|.|+++|+
T Consensus       116 a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~  193 (249)
T cd01128         116 ARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRR  193 (249)
T ss_pred             hhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchH
Confidence            455666654 677899999        9999999999999999999  99999964332  4455565567899999999


Q ss_pred             cchhhhcC
Q psy11400        291 KSLWTHHE  298 (298)
Q Consensus       291 l~~~~~~~  298 (298)
                      ++...+++
T Consensus       194 la~~~~~p  201 (249)
T cd01128         194 LAERRIFP  201 (249)
T ss_pred             HhhCCCCC
Confidence            99887764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.89  E-value=6.2e-09  Score=92.05  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHhcCCCEEEEeccccCCCHHH-HHH---HHHHHHhc---CcEEEEEecCcchhhh
Q psy11400        238 GEKQRVAMARLFYHRPQFAILDECTSAVSVDV-EGS---MYEYCREV---GITLFTVSHRKSLWTH  296 (298)
Q Consensus       238 GqkQRlaiARaL~~~P~iliLDEPTs~LD~~~-~~~---i~~~l~~~---~~TiIiitH~l~~~~~  296 (298)
                      -+-||+++|++++.+|++++||||++|+|+.. ...   +.+.+.+.   +.++|++||+.+.++.
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            35599999999999999999999999999854 222   23333332   2489999999987754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.89  E-value=2.2e-09  Score=115.44  Aligned_cols=66  Identities=23%  Similarity=0.262  Sum_probs=58.1

Q ss_pred             cCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      ++..||||||++++||++|+.    .|+++|||||+++||+.....+.+++.+.  +.++|+|||+..++..
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~ 1142 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEY 1142 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHh
Confidence            456899999999999999984    78999999999999999999999888763  5789999999887654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00611 recf recF protein

Probab=98.85  E-value=4.9e-09  Score=99.94  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             CCCChhHHHHHHHHHHHhc---------CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        233 DVLSGGEKQRVAMARLFYH---------RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~---------~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      ..+|.|||++++||.+|+.         +|++++||||+|+||+...+.+.+.+.+.|.+++++||+++.+
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~  344 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHL  344 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhc
Confidence            3689999999999999999         9999999999999999999999999976578999999988643

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.83  E-value=9.5e-09  Score=106.60  Aligned_cols=64  Identities=20%  Similarity=0.331  Sum_probs=53.6

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHH----HHHHHhcCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM----YEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      .+++|+|++|++.|++++ .+|+++|||||++|+|+.....+    .+.+.+.+.++|++||+.++..+
T Consensus       388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~  455 (782)
T PRK00409        388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL  455 (782)
T ss_pred             hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence            468999999999999998 89999999999999999755544    34455568999999999887654

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.82  E-value=6.5e-09  Score=92.49  Aligned_cols=129  Identities=16%  Similarity=0.095  Sum_probs=77.3

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc-ccccCCceeeccCCCcEEEEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ-LWPLFGGTVTKPPRGKLFYVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~-l~~~~~G~i~~~~r~~i~~v~Q~~~l  178 (298)
                      +.+|++|.+++|++++|+        |||  ||  +++.       +    ++ .+.+..|.......-+++|..|    
T Consensus        20 v~n~i~~~~~~g~~~~it--------G~N~~GKStll~~-------i----~~~~~la~~G~~v~a~~~~~~~~~~----   76 (222)
T cd03287          20 VPNDIHLSAEGGYCQIIT--------GPNMGGKSSYIRQ-------V----ALITIMAQIGSFVPASSATLSIFDS----   76 (222)
T ss_pred             EEEeEEEEecCCcEEEEE--------CCCCCCHHHHHHH-------H----HHHHHHHhCCCEEEcCceEEeccce----
Confidence            889999999999999999        999  99  8888       6    55 4556666643222223433322    


Q ss_pred             CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy11400        179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL  258 (298)
Q Consensus       179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliL  258 (298)
                              |....        .. .+.+.     -++.                 ++ ..|-++++-+-.-+.+|+++||
T Consensus        77 --------i~~~~--------~~-~d~~~-----~~~S-----------------tF-~~e~~~~~~il~~~~~~sLvll  116 (222)
T cd03287          77 --------VLTRM--------GA-SDSIQ-----HGMS-----------------TF-MVELSETSHILSNCTSRSLVIL  116 (222)
T ss_pred             --------EEEEe--------cC-ccccc-----cccc-----------------hH-HHHHHHHHHHHHhCCCCeEEEE
Confidence                    21100        00 00000     0111                 11 1223333333334568999999


Q ss_pred             eccccCCCH---HH-HHHHHHHHHhc-CcEEEEEecCcchhh
Q psy11400        259 DECTSAVSV---DV-EGSMYEYCREV-GITLFTVSHRKSLWT  295 (298)
Q Consensus       259 DEPTs~LD~---~~-~~~i~~~l~~~-~~TiIiitH~l~~~~  295 (298)
                      |||.+|.|+   .. ...+.+.+.+. +.++|++||+.++..
T Consensus       117 DE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~  158 (222)
T cd03287         117 DELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE  158 (222)
T ss_pred             ccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence            999777664   33 23455555554 889999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00064 recF recombination protein F; Reviewed

Probab=98.80  E-value=9e-09  Score=98.02  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400        233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL  293 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~  293 (298)
                      ..+|.||||++++|++|+         .+|++++||||+++||+.....+.+.+.+.+..++++||+...
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~  341 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLED  341 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhh
Confidence            579999999999999986         7999999999999999999999999987656789999998654

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.76  E-value=1.3e-08  Score=111.19  Aligned_cols=61  Identities=23%  Similarity=0.431  Sum_probs=55.3

Q ss_pred             cCCCCChhHHHHHH----HHHH--------HhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400        231 WIDVLSGGEKQRVA----MARL--------FYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK  291 (298)
Q Consensus       231 ~~~~LSgGqkQRla----iARa--------L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l  291 (298)
                      ....|||||||+++    +|++        +..+|++++|||||++||+.....+++++.+.+.++|++||++
T Consensus      1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSERE 1316 (1353)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccch
Confidence            45789999999996    5755        4589999999999999999999999999999999999999986

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.72  E-value=1.6e-08  Score=106.51  Aligned_cols=65  Identities=31%  Similarity=0.428  Sum_probs=54.4

Q ss_pred             CCCCChhHHH------HHHHHHHHhcC-----C-CEEEEeccccCCCHHHHHHHHHHHHh---cCc-EEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQ------RVAMARLFYHR-----P-QFAILDECTSAVSVDVEGSMYEYCRE---VGI-TLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQ------RlaiARaL~~~-----P-~iliLDEPTs~LD~~~~~~i~~~l~~---~~~-TiIiitH~l~~~~  295 (298)
                      +..|||||||      |+++|+++...     | +++||||||++||+.....+.++++.   .|. +||+|||+...+.
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~  858 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG  858 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence            4689999999      99999999864     3 67999999999999988888877654   244 7999999998775


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       859 ~  859 (880)
T PRK02224        859 A  859 (880)
T ss_pred             h
Confidence            4

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.68  E-value=9.1e-08  Score=84.40  Aligned_cols=64  Identities=30%  Similarity=0.505  Sum_probs=50.4

Q ss_pred             CCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      ..||||||.+++||-.|    +..++++||||+.++||......+.+++++.  +.-+|++||+..+...
T Consensus       135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~  204 (220)
T PF02463_consen  135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED  204 (220)
T ss_dssp             TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            48999999999998665    3567899999999999999999999999875  4889999999887654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.64  E-value=9e-08  Score=97.12  Aligned_cols=70  Identities=24%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHH---HHhcCcEEEEEecCcchhhhcC
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEY---CREVGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~---l~~~~~TiIiitH~l~~~~~~~  298 (298)
                      .+...+|||||.||+-||.-+-..=  =+++||||+.||-+.--+++.+.   +++.|-|+|+|.||.++++..|
T Consensus       476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD  550 (935)
T COG0178         476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAAD  550 (935)
T ss_pred             cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcC
Confidence            3456799999999999999998775  48899999999977666666555   4557999999999999988654

>PRK14079 recF recombination protein F; Provisional

Probab=98.46  E-value=3.2e-07  Score=87.04  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=52.4

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      ..+|+|||+++++|+.|+         .+|++++||||+|.||......+.+.+.....++|..|+..+.+
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~~~~~~  332 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTEAPPGA  332 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCCCCCCC
Confidence            368999999999999998         89999999999999999999999998865445666666655443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.38  E-value=7.3e-07  Score=94.45  Aligned_cols=66  Identities=26%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             cCCCCChhHHHHHHHHHHHh------cC--CCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFY------HR--PQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~------~~--P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ...+|||||+=.++||-+|+      .+  -+++||||||..||++....+.+.+.+   .+.+|++|||+..+...
T Consensus       812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~  888 (908)
T COG0419         812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKER  888 (908)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHh
Confidence            46789999999877766654      56  699999999999999999988887764   37899999999887654

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.36  E-value=1.6e-06  Score=75.58  Aligned_cols=63  Identities=19%  Similarity=0.344  Sum_probs=51.5

Q ss_pred             CCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEEecCcchh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSLW  294 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~  294 (298)
                      ...+|.|+||.+.++.+++..+   .++++|||-++|.|.....+.+.+++.   +.-+|++||.+.++
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            3567999999999998888777   899999999999999999999988753   57999999998765

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.35  E-value=7.7e-07  Score=79.01  Aligned_cols=57  Identities=19%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHH----HHHHHHhc-CcEEEEEecCcchhhh
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGS----MYEYCREV-GITLFTVSHRKSLWTH  296 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~----i~~~l~~~-~~TiIiitH~l~~~~~  296 (298)
                      -++++-.-..+.+|++++||||++|.++.....    +.+.+.+. +.++|++||+.++...
T Consensus        97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286          97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            344443334457899999999999998865333    34444444 8999999999887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.31  E-value=5.6e-07  Score=70.95  Aligned_cols=61  Identities=18%  Similarity=0.072  Sum_probs=48.1

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-----------cCCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-----------PPRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-----------~~r~~  168 (298)
                      +|++++|++++|+.++|+        |||  ||  |+++       +    .      +|++..           ..++.
T Consensus         4 aL~~vsl~i~~ge~v~I~--------GpSGsGKSTLl~~-------l----~------~G~i~~~g~di~~~~~~~~~~~   58 (107)
T cd00820           4 SLHGVLVDVYGKVGVLIT--------GDSGIGKTELALE-------L----I------KRKHRLVGDDNVEIREDSKDEL   58 (107)
T ss_pred             EEEeeEEEEcCCEEEEEE--------cCCCCCHHHHHHH-------h----h------CCeEEEeeEeHHHhhhhhcCCE
Confidence            899999999999999999        999  99  7877       4    1      333321           12445


Q ss_pred             EEEEcCcCCCCCCCHHHHHccCC
Q psy11400        169 LFYVPQRPYMTLGTLRDQVIYPH  191 (298)
Q Consensus       169 i~~v~Q~~~l~~~tv~eni~~~~  191 (298)
                      ++++||+  +|.+|++|||.++.
T Consensus        59 ~~~~~q~--lf~~ti~~Ni~~~~   79 (107)
T cd00820          59 IGRNPEL--GLEIRLRLNIFLIT   79 (107)
T ss_pred             EEEechh--cchhhHHhhceeee
Confidence            7788887  89999999999864

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.30  E-value=1.6e-06  Score=66.24  Aligned_cols=49  Identities=31%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             cCCCCChhHHHH-HH------HHHHHhc------CCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        231 WIDVLSGGEKQR-VA------MARLFYH------RPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       231 ~~~~LSgGqkQR-la------iARaL~~------~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      ....+||||||. +.      ++..+-.      .|++++|||||++||++..+.+++++++
T Consensus        29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            356899999954 33      3333333      3799999999999999999999998864

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.12  E-value=3.2e-06  Score=74.23  Aligned_cols=47  Identities=13%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             CCChh--HHHHHHHHHHHhcCCCEEEEeccc-----cCCCHHHHHHHHHHHHhc
Q psy11400        234 VLSGG--EKQRVAMARLFYHRPQFAILDECT-----SAVSVDVEGSMYEYCREV  280 (298)
Q Consensus       234 ~LSgG--qkQRlaiARaL~~~P~iliLDEPT-----s~LD~~~~~~i~~~l~~~  280 (298)
                      ..||+  |++++.|||+++.+|+++++||||     ++||+...+.+.+.+++.
T Consensus       150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            34444  999999999999999999999999     999999999999988763

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.11  E-value=1.8e-05  Score=67.50  Aligned_cols=63  Identities=11%  Similarity=0.129  Sum_probs=48.3

Q ss_pred             cCCCCChhHHH------HHHHHHHHhcCCCEEEEeccccCCC---HHHHHHHHHH---HHhcCcEEEEEecCcch
Q psy11400        231 WIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVS---VDVEGSMYEY---CREVGITLFTVSHRKSL  293 (298)
Q Consensus       231 ~~~~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD---~~~~~~i~~~---l~~~~~TiIiitH~l~~  293 (298)
                      .+..+|+|++|      +...+.+...+|+++++|||++.+|   ......+.++   +++.|.|+|+++|....
T Consensus        68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~  142 (187)
T cd01124          68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL  142 (187)
T ss_pred             CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence            35689999998      5555555678999999999999999   5555555444   44568999999998754

A related protein is found in archaea.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.07  E-value=1.1e-05  Score=73.99  Aligned_cols=42  Identities=14%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             HHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400        248 LFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL  293 (298)
Q Consensus       248 aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~  293 (298)
                      +..++|+++++|||++.   +....+.+.+. .|+|+|+++|+.+.
T Consensus       190 i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~  231 (270)
T TIGR02858       190 IRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDV  231 (270)
T ss_pred             HHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHH
Confidence            33369999999999853   33344445444 49999999998765

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.00  E-value=2.1e-05  Score=76.39  Aligned_cols=141  Identities=18%  Similarity=0.016  Sum_probs=91.4

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      ++.+.++..|..+-.        +++. .|.+.+|++++|+        |++  ||  |+++       +    .+..++
T Consensus       131 ~~r~~i~~~l~TGir--------aID~-ll~I~~Gqri~I~--------G~sG~GKTtLl~~-------I----a~~~~~  182 (432)
T PRK06793        131 FEREEITDVFETGIK--------SIDS-MLTIGIGQKIGIF--------AGSGVGKSTLLGM-------I----AKNAKA  182 (432)
T ss_pred             hheechhhccCCCCE--------EEec-cceecCCcEEEEE--------CCCCCChHHHHHH-------H----hccCCC
Confidence            455555555543332        7776 5999999999999        999  99  7887       6    666655


Q ss_pred             CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS  236 (298)
                      +.|.        |+++.|+.    .++.|.+.                   ..+..-++..        ..+.-...+-|
T Consensus       183 ~~gv--------I~~iGerg----~ev~e~~~-------------------~~l~~~gl~~--------tvvv~~tsd~s  223 (432)
T PRK06793        183 DINV--------ISLVGERG----REVKDFIR-------------------KELGEEGMRK--------SVVVVATSDES  223 (432)
T ss_pred             CeEE--------EEeCCCCc----ccHHHHHH-------------------HHhhhcccce--------eEEEEECCCCC
Confidence            5443        44555543    23333332                   1111112211        01112246789


Q ss_pred             hhHHHHHHHHHHHh-------cCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11400        237 GGEKQRVAMARLFY-------HRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR  290 (298)
Q Consensus       237 gGqkQRlaiARaL~-------~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~  290 (298)
                      .|+|+|++.+.+.+       .++-++++|++|...|+.  +++...+.+   .|.+..+.+|-
T Consensus       224 ~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l  285 (432)
T PRK06793        224 HLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM  285 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc
Confidence            99999999999988       899999999999999986  344444433   26777777773

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.97  E-value=6.6e-05  Score=67.17  Aligned_cols=58  Identities=16%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCEEEEeccccCC----CHHHHHHHHHHHH---hcCcEEEEEecCcc
Q psy11400        234 VLSGGEKQRVAMARLFYH----RPQFAILDECTSAV----SVDVEGSMYEYCR---EVGITLFTVSHRKS  292 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~L----D~~~~~~i~~~l~---~~~~TiIiitH~l~  292 (298)
                      .+|+++.++-.+++.+-.    +|+++++||||+++    |+...+.+.+.++   +.|.|+++ ||+..
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~  163 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPK  163 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eeccc
Confidence            467776666555554443    69999999999999    6666666666655   34776655 55544

>PRK13695 putative NTPase; Provisional

Probab=97.78  E-value=4.7e-05  Score=64.76  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=51.6

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEec--cccCCCHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDE--CTSAVSVDVEGSMYEYCREVGITLFTVSHRKSL  293 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDE--PTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~  293 (298)
                      ...+||+++-++.+++..+.+|+++++||  |+..+|....+.+.+.+ +.+.++|+++|+...
T Consensus        76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~  138 (174)
T PRK13695         76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSV  138 (174)
T ss_pred             EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhh
Confidence            45799999999999999999999999999  66677777777777777 568999999998543

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=97.58  E-value=0.0007  Score=71.45  Aligned_cols=62  Identities=19%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             CCChhHHHHHHHHHHHhc--CCCEEEEecc---ccCCCHHHH-HHHHHHHHhc-CcEEEEEecCcchhh
Q psy11400        234 VLSGGEKQRVAMARLFYH--RPQFAILDEC---TSAVSVDVE-GSMYEYCREV-GITLFTVSHRKSLWT  295 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~--~P~iliLDEP---Ts~LD~~~~-~~i~~~l~~~-~~TiIiitH~l~~~~  295 (298)
                      .+|-=+.....++++|-.  ++.++|||||   |+.+|.... ..+.+.+.+. ++++|++||..++..
T Consensus       666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~  734 (854)
T PRK05399        666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE  734 (854)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence            456666666777777665  8999999999   999997653 3466776665 589999999976543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.47  E-value=0.00025  Score=72.76  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             CCCCChhHHHHHHHHHHHh------cCCCEEEEeccccCCCHHHHHHHHH-HHHhcCcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFY------HRPQFAILDECTSAVSVDVEGSMYE-YCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~------~~P~iliLDEPTs~LD~~~~~~i~~-~l~~~~~TiIiitH~l~~~~  295 (298)
                      ...|||||||-++||-.+.      .+.++ |+||||+.||..-+..+.+ ++.+...-||+.||+-+...
T Consensus       549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~  618 (650)
T TIGR03185       549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDE  618 (650)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCH
Confidence            4579999999976655443      24566 5699999999988888774 66666778899999876543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.45  E-value=0.00094  Score=54.70  Aligned_cols=62  Identities=21%  Similarity=0.097  Sum_probs=45.5

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCC----------CHHHHHHHHHH---HHhcCcEEEEEecCcchh
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----------SVDVEGSMYEY---CREVGITLFTVSHRKSLW  294 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~L----------D~~~~~~i~~~---l~~~~~TiIiitH~l~~~  294 (298)
                      ...+.++.++++.+++...+|+++++||+++-+          |....+.+.++   +++.++|+|+++|.....
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            345666777889999999999999999999544          44434444443   444689999999987543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.33  E-value=0.00032  Score=76.41  Aligned_cols=66  Identities=29%  Similarity=0.426  Sum_probs=57.1

Q ss_pred             CCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhhc
Q psy11400        232 IDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTHH  297 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~~  297 (298)
                      ...||||||-..|||-.|+    ...++.+|||--++||......+.+++++.  +.=.|+||||..+....
T Consensus      1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~a 1135 (1163)
T COG1196        1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAA 1135 (1163)
T ss_pred             hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHH
Confidence            3469999999999998885    556999999999999999999999999874  56789999999876543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.32  E-value=0.0025  Score=56.70  Aligned_cols=60  Identities=17%  Similarity=0.117  Sum_probs=44.9

Q ss_pred             CCChhHHHHHHHHHHHhc--CCCEEEEeccccCC---CHHHHHHHHHHH---HhcCcEEEEEecCcch
Q psy11400        234 VLSGGEKQRVAMARLFYH--RPQFAILDECTSAV---SVDVEGSMYEYC---REVGITLFTVSHRKSL  293 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~--~P~iliLDEPTs~L---D~~~~~~i~~~l---~~~~~TiIiitH~l~~  293 (298)
                      ..|.++++.+..++.++.  +|+++++||||+.+   |......+.+.+   ++.+.|+++++|....
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~  167 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF  167 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence            457889999999999997  99999999999654   444334443333   3458999999997653

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.32  E-value=0.00023  Score=63.79  Aligned_cols=43  Identities=14%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             HHhcCCCEEEEeccccC------CCHHHHHHHHHHH----HhcCcEEEEEecCc
Q psy11400        248 LFYHRPQFAILDECTSA------VSVDVEGSMYEYC----REVGITLFTVSHRK  291 (298)
Q Consensus       248 aL~~~P~iliLDEPTs~------LD~~~~~~i~~~l----~~~~~TiIiitH~l  291 (298)
                      +...+|+++|+| |+++      +|+.....+.+.+    ++.|+|+|+++|..
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            346899999999 7764      5777666555544    34599999999975

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>KOG0964|consensus

Probab=97.03  E-value=0.00036  Score=72.13  Aligned_cols=64  Identities=27%  Similarity=0.435  Sum_probs=54.8

Q ss_pred             CCCChhHHHHHHHHHHHhc---C-CCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLFYH---R-PQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~---~-P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      .+||||||--||||..|+-   + +++++|||.-+|||++.+..+-.++++.  ..-.|++|-|+++++.
T Consensus      1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~v 1165 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSV 1165 (1200)
T ss_pred             HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHH
Confidence            3799999999999999863   3 4899999999999999999988888874  4567889999988764

>PF13175 AAA_15: AAA ATPase domain

Probab=96.96  E-value=0.0021  Score=61.35  Aligned_cols=64  Identities=11%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             cCCCCChhHHHHHHHHHHHh------cC-CC---EEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        231 WIDVLSGGEKQRVAMARLFY------HR-PQ---FAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~------~~-P~---iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      ....+|.|.++.+.|+-.+.      .+ +.   ++++|||-+.|.|..++.+.+.+.+    .+..+|++||.+.++
T Consensus       338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ii  415 (415)
T PF13175_consen  338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFII  415 (415)
T ss_pred             ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhhC
Confidence            34679999998888776652      22 22   9999999999999999999888765    378999999988653

>COG4637 Predicted ATPase [General function prediction only]

Probab=96.93  E-value=0.0023  Score=59.45  Aligned_cols=64  Identities=23%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             CCCChhHHHHHHHHHHHhc--CCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLFYH--RPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~--~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      ..||-|+.+-+++|-+|+.  .|.+++||||-.+|-|.....+.++.++.  ..-||++||-..++..
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~  336 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNA  336 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhh
Confidence            4899999999999999984  58999999999999999888888777653  3489999999887764

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.90  E-value=0.0032  Score=58.74  Aligned_cols=48  Identities=17%  Similarity=0.035  Sum_probs=33.2

Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      .++.+|..+|+++++|||.+   .+.. .+++.+...+.+++.++|..+...
T Consensus       210 ~l~~~Lr~~pd~ii~gE~r~---~e~~-~~l~a~~~g~~~~i~T~Ha~~~~~  257 (308)
T TIGR02788       210 LLQSCLRMRPDRIILGELRG---DEAF-DFIRAVNTGHPGSITTLHAGSPEE  257 (308)
T ss_pred             HHHHHhcCCCCeEEEeccCC---HHHH-HHHHHHhcCCCeEEEEEeCCCHHH
Confidence            56778899999999999997   3332 233433332346799999987543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=96.84  E-value=0.0056  Score=59.89  Aligned_cols=38  Identities=11%  Similarity=-0.049  Sum_probs=33.8

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV  161 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i  161 (298)
                      +++++ |.+.+|++++|+        |+|  ||  |+++       +    .++++++.|.+
T Consensus       148 vid~l-~~i~~Gq~i~I~--------G~sG~GKStLl~~-------I----~~~~~~~~gvI  189 (438)
T PRK07721        148 AIDSL-LTVGKGQRVGIF--------AGSGVGKSTLMGM-------I----ARNTSADLNVI  189 (438)
T ss_pred             hhhee-eeecCCcEEEEE--------CCCCCCHHHHHHH-------H----hcccCCCeEEE
Confidence            89999 999999999999        999  99  8888       7    88888877765

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=96.75  E-value=0.0024  Score=67.53  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=42.9

Q ss_pred             HHHHHhcCCCEEEEeccccCC-CHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400        245 MARLFYHRPQFAILDECTSAV-SVDVEGSMYEYCR---EVGITLFTVSHRKSLWT  295 (298)
Q Consensus       245 iARaL~~~P~iliLDEPTs~L-D~~~~~~i~~~l~---~~~~TiIiitH~l~~~~  295 (298)
                      |++++..+|+++++|||+.+| |+...+.+.+.++   +.|.+++++||+++.+.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~  734 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA  734 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            678889999999999999999 6887777766654   46899999999998654

>TIGR00767 rho transcription termination factor Rho

Probab=96.66  E-value=0.0014  Score=62.98  Aligned_cols=45  Identities=20%  Similarity=0.055  Sum_probs=39.3

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCccccee-----------eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFF-----------DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~-----------~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      .+.+.|+||+|.||+.+.        +|+           |+++.|.+|+.++|+        ||+  ||  |++.
T Consensus       128 ~~ri~Fe~LTf~YP~er~--------~Le~~~~~~~~R~id~~~pig~Gq~~~Iv--------G~~g~GKTtL~~~  187 (415)
T TIGR00767       128 KNRVLFENLTPLYPNERL--------RLETSTEDLSTRVLDLFAPIGKGQRGLIV--------APPKAGKTVLLQK  187 (415)
T ss_pred             CCCeEEEEeeecCCCccc--------eeecCccccceeeeeeEEEeCCCCEEEEE--------CCCCCChhHHHHH
Confidence            356999999999997655        786           999999999999999        999  99  6666

Members of this family differ in the specificity of RNA binding.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.57  E-value=0.0034  Score=61.97  Aligned_cols=59  Identities=12%  Similarity=-0.085  Sum_probs=41.9

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT  179 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~  179 (298)
                      ++++.++.+++|.+++++        |||  ||  ++..       |    ++.+....|.      .+|+++.+++  +
T Consensus       245 ~~~~~~~~~~~g~Vi~Lv--------GpnGvGKTTTiaK-------L----A~~~~~~~G~------~kV~LI~~Dt--~  297 (484)
T PRK06995        245 VLDSEDALLDRGGVFALM--------GPTGVGKTTTTAK-------L----AARCVMRHGA------SKVALLTTDS--Y  297 (484)
T ss_pred             hccCccccccCCcEEEEE--------CCCCccHHHHHHH-------H----HHHHHHhcCC------CeEEEEeCCc--c
Confidence            556677778899999999        999  99  4443       4    6655444442      3689999998  4


Q ss_pred             CCCHHHHHcc
Q psy11400        180 LGTLRDQVIY  189 (298)
Q Consensus       180 ~~tv~eni~~  189 (298)
                      ..+..|++.+
T Consensus       298 RigA~EQLr~  307 (484)
T PRK06995        298 RIGGHEQLRI  307 (484)
T ss_pred             chhHHHHHHH
Confidence            4566777754

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=96.48  E-value=0.0042  Score=65.43  Aligned_cols=46  Identities=15%  Similarity=0.144  Sum_probs=38.7

Q ss_pred             hcCCCEEEEeccccCC-CHHHHHHHHHHHH---hcCcEEEEEecCcchhh
Q psy11400        250 YHRPQFAILDECTSAV-SVDVEGSMYEYCR---EVGITLFTVSHRKSLWT  295 (298)
Q Consensus       250 ~~~P~iliLDEPTs~L-D~~~~~~i~~~l~---~~~~TiIiitH~l~~~~  295 (298)
                      ..+|+++++|||+.+| |+...+.+.+.++   +.|.+++++||+++.+.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~  699 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE  699 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence            5799999999999999 6887777776654   45899999999998653

>PF13166 AAA_13: AAA domain

Probab=96.39  E-value=0.0089  Score=61.79  Aligned_cols=64  Identities=17%  Similarity=0.284  Sum_probs=51.7

Q ss_pred             CCCCChhHHHHHHHHHHH--hc-------CCCEEEEeccccCCCHHHHHHHHHHHHhc-----CcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLF--YH-------RPQFAILDECTSAVSVDVEGSMYEYCREV-----GITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL--~~-------~P~iliLDEPTs~LD~~~~~~i~~~l~~~-----~~TiIiitH~l~~~~  295 (298)
                      ...||-|||.-||||-=|  +.       +..++|+|.|-|+||...+..+...+++.     .+-||+-||++....
T Consensus       498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~  575 (712)
T PF13166_consen  498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFK  575 (712)
T ss_pred             cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHH
Confidence            468999999999988422  33       67899999999999998888877776653     467999999987654

>KOG0933|consensus

Probab=96.25  E-value=0.004  Score=64.89  Aligned_cols=58  Identities=22%  Similarity=0.369  Sum_probs=46.7

Q ss_pred             CCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecC
Q psy11400        233 DVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHR  290 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~  290 (298)
                      .+||||||-.|||+..|    ++.++++||||--+|||..--+.|-++++..  +.-.|+||-.
T Consensus      1081 ~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLK 1144 (1174)
T KOG0933|consen 1081 SELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLK 1144 (1174)
T ss_pred             HHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEch
Confidence            47999999999876554    4677999999999999998777788888763  6667777643

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.04  E-value=0.014  Score=56.53  Aligned_cols=78  Identities=19%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             HHcCCchhhhh-cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCC-----CHHHHHHH-----------
Q psy11400        211 QKVQLGYILNR-EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV-----SVDVEGSM-----------  273 (298)
Q Consensus       211 ~~~~l~~~~~~-~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~L-----D~~~~~~i-----------  273 (298)
                      ..+++..|++. |.|.||..---.+=||-.-|=..|..|+=...++|++||=|||-     |...+..+           
T Consensus       298 ~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfi  377 (448)
T PF09818_consen  298 EGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFI  377 (448)
T ss_pred             eCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHH
Confidence            44566666544 77777764344678999999999999999999999999999996     55544433           


Q ss_pred             ---HHHHHhcCcEEEEEe
Q psy11400        274 ---YEYCREVGITLFTVS  288 (298)
Q Consensus       274 ---~~~l~~~~~TiIiit  288 (298)
                         .++.++.|.+.|+|+
T Consensus       378 drvr~l~~~~GvStIlV~  395 (448)
T PF09818_consen  378 DRVRSLYEKLGVSTILVV  395 (448)
T ss_pred             HHHHHHHHHcCceEEEEe
Confidence               223345687777765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.90  E-value=0.02  Score=49.86  Aligned_cols=48  Identities=13%  Similarity=0.184  Sum_probs=38.8

Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      +++++|..+|+++++||+.   |.+....+.+... .|.+++.++|..+...
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~-~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLALTAAE-TGHLVMSTLHTNSAAK  113 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHH-cCCEEEEEecCCcHHH
Confidence            5789999999999999996   6776666666554 4899999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=95.85  E-value=0.06  Score=56.92  Aligned_cols=46  Identities=20%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             hcCCCEEEEecc---ccCCCHHH-HHHHHHHHHh-cCcEEEEEecCcchhh
Q psy11400        250 YHRPQFAILDEC---TSAVSVDV-EGSMYEYCRE-VGITLFTVSHRKSLWT  295 (298)
Q Consensus       250 ~~~P~iliLDEP---Ts~LD~~~-~~~i~~~l~~-~~~TiIiitH~l~~~~  295 (298)
                      +.++.++|+||+   |+.+|... ...+.+.+.+ .++.++++||..++..
T Consensus       669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~  719 (840)
T TIGR01070       669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA  719 (840)
T ss_pred             CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence            468899999999   66666655 4457777766 6889999999876543

>KOG0962|consensus

Probab=95.76  E-value=0.012  Score=63.43  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CCChhHHH------HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----H----hcCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----R----EVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~----~~~~TiIiitH~l~~~~~  296 (298)
                      .-|-|||=      |+|+|=.|..+..+|=|||||.+||......+...+    .    +.+.-.|+|||+..++..
T Consensus      1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred             CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence            46889875      788999999999999999999999987665544332    2    137789999999887653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.67  E-value=0.16  Score=39.40  Aligned_cols=59  Identities=25%  Similarity=0.255  Sum_probs=45.8

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHH---------HHHhcCcEEEEEecC
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE---------YCREVGITLFTVSHR  290 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~---------~l~~~~~TiIiitH~  290 (298)
                      .....+++..+..+++|-..+|+++++||+..-.+.........         .....+..+|.++|.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            34678889999999999998999999999999998876654432         222346788888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.59  E-value=0.008  Score=51.97  Aligned_cols=109  Identities=11%  Similarity=-0.012  Sum_probs=61.1

Q ss_pred             EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCc
Q psy11400        117 NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT  192 (298)
Q Consensus       117 ~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~  192 (298)
                      +++|+        |+|  ||  +.+.       +    .+++  .+        ..+.+++++.+....+..+.......
T Consensus         1 iigi~--------G~~GsGKSTl~~~-------l----~~~l--~~--------~~~~v~~~D~~~~~~~~~~~~~~~~~   51 (198)
T cd02023           1 IIGIA--------GGSGSGKTTVAEE-------I----IEQL--GN--------PKVVIISQDSYYKDLSHEELEERKNN   51 (198)
T ss_pred             CEEEE--------CCCCCCHHHHHHH-------H----HHHh--CC--------CCeEEEEecccccccccccHHHhccC
Confidence            37888        999  99  7777       6    5543  11        24667777765433222222111110


Q ss_pred             chhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCH
Q psy11400        193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV  267 (298)
Q Consensus       193 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~  267 (298)
                      .... ......+.+.+.+..+......+.         +..++|.|++++..+   .+..|+++|+|+|+...++
T Consensus        52 ~~~~-~~~~~~~~~~~~l~~l~~~~~~~~---------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          52 NYDH-PDAFDFDLLISHLQDLKNGKSVEI---------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             CCCC-CCcccHHHHHHHHHHHHCCCCEec---------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence            0000 011223344455555544332222         245788888776555   5788999999999999875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=95.57  E-value=0.015  Score=56.89  Aligned_cols=70  Identities=14%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.++.++++..|..+..        +++.++ .|.+|++++|+        |+|  ||  |+++       +    +++.
T Consensus       138 ~~~~r~~v~~~l~TGi~--------aID~L~-~I~~Gqri~I~--------G~SGsGKTTLL~~-------I----a~l~  189 (450)
T PRK06002        138 PAMTRARVETGLRTGVR--------VIDIFT-PLCAGQRIGIF--------AGSGVGKSTLLAM-------L----ARAD  189 (450)
T ss_pred             CCeEeecceEEcCCCcE--------Eeeeec-eecCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            46889999999976644        888885 99999999999        999  99  8888       6    7777


Q ss_pred             ccCCceeec------------------cCCCcEEEEcCcC
Q psy11400        155 PLFGGTVTK------------------PPRGKLFYVPQRP  176 (298)
Q Consensus       155 ~~~~G~i~~------------------~~r~~i~~v~Q~~  176 (298)
                      +|+.|.+..                  ..++.|+||+|..
T Consensus       190 ~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd  229 (450)
T PRK06002        190 AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD  229 (450)
T ss_pred             CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence            777665421                  1235799999964

>COG3910 Predicted ATPase [General function prediction only]

Probab=95.54  E-value=0.042  Score=47.78  Aligned_cols=61  Identities=23%  Similarity=0.258  Sum_probs=46.7

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchh
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLW  294 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~  294 (298)
                      ..-|.||-=---+.+.+- +--+.|||||-|+|.+.-+-.+...++   +.|.-+|+.||.+=+.
T Consensus       128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl  191 (233)
T COG3910         128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL  191 (233)
T ss_pred             hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe
Confidence            356999987666666664 567999999999999986666665554   3588999999987543

>KOG0018|consensus

Probab=95.34  E-value=0.017  Score=60.80  Aligned_cols=63  Identities=32%  Similarity=0.508  Sum_probs=53.7

Q ss_pred             CCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        232 IDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      ..+||||||=-.|||..|.    +..++.+|||--+|||.....++..+++..+.-.|+||-..++-
T Consensus      1049 m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr~~~~Q~IvISLK~~~y 1115 (1141)
T KOG0018|consen 1049 MDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIRSSNFQFIVISLKEEFY 1115 (1141)
T ss_pred             hhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHhcCCceEEEEeccHHHh
Confidence            4689999999999999886    34689999999999999999999999987777888888655543

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=95.08  E-value=0.033  Score=58.70  Aligned_cols=47  Identities=19%  Similarity=0.257  Sum_probs=37.1

Q ss_pred             HhcCCCEEEEeccccCCC-HHHHHHHHHHH---HhcCcEEEEEecCcchhh
Q psy11400        249 FYHRPQFAILDECTSAVS-VDVEGSMYEYC---REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD-~~~~~~i~~~l---~~~~~TiIiitH~l~~~~  295 (298)
                      +-.+|+++++|||+..|| +...+.+.+.+   ++.|.+++++||+++.+.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID  682 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence            446899999999999999 56666665554   446899999999987553

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=95.07  E-value=0.012  Score=57.93  Aligned_cols=27  Identities=11%  Similarity=0.103  Sum_probs=25.4

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      +|+++||++++||+++|+        |||  ||  |++.
T Consensus        21 vL~~Vsl~i~~GEiv~L~--------G~SGsGKSTLLr~   51 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLC--------GSSGDGKSEILAE   51 (504)
T ss_pred             HHhCCceeecCCCEEEEE--------CCCCCCHHHHHhc
Confidence            899999999999999999        999  99  7774

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.84  E-value=0.083  Score=52.86  Aligned_cols=63  Identities=24%  Similarity=0.305  Sum_probs=51.5

Q ss_pred             CCCChhHHHHHHHHHHHh--cC--CCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        233 DVLSGGEKQRVAMARLFY--HR--PQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~--~~--P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      ...||||--|+++|--.+  ..  .+.||+||--+|+.-.+...|-+.+++.  ..-|++|||-+-.+.
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa  498 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAA  498 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHh
Confidence            357999999999886443  33  5599999999999999999998888874  577999999886554

>KOG0996|consensus

Probab=94.71  E-value=0.028  Score=59.69  Aligned_cols=62  Identities=26%  Similarity=0.406  Sum_probs=52.6

Q ss_pred             CCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcch
Q psy11400        232 IDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSL  293 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~  293 (298)
                      +.+||||||=.-+||-.|+    +..++++|||--+|||......+-.++++.  +.-.|+||-|-+.
T Consensus      1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnM 1260 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNM 1260 (1293)
T ss_pred             cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhH
Confidence            5689999999999988885    456999999999999999888888888863  6778888877654

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=94.05  E-value=0.074  Score=50.09  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             EEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchh
Q psy11400        256 AILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLW  294 (298)
Q Consensus       256 liLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~  294 (298)
                      +++|||+.+||+.....+.+.+++.  +.++|++||+++.+
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~l  156 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKV  156 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhC
Confidence            5578999999999999999999874  78899999998743

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=93.87  E-value=0.11  Score=54.84  Aligned_cols=48  Identities=10%  Similarity=0.144  Sum_probs=38.0

Q ss_pred             HHhcCCCEEEEeccccCCC-HHHHHHHHHHH---HhcCcEEEEEecCcchhh
Q psy11400        248 LFYHRPQFAILDECTSAVS-VDVEGSMYEYC---REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       248 aL~~~P~iliLDEPTs~LD-~~~~~~i~~~l---~~~~~TiIiitH~l~~~~  295 (298)
                      .+..+|.++++|||...|| +...+.+.+.+   ++.|.+++++||.++.+.
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~  689 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDAS  689 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3457899999999999999 76666666554   456889999999987543

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=93.42  E-value=0.26  Score=50.40  Aligned_cols=48  Identities=10%  Similarity=0.146  Sum_probs=35.6

Q ss_pred             HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        206 LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       206 i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      ..+.++.+++.....         ++...+|||                +|+||| +..||+..+..+.+.+++
T Consensus       244 a~~~l~~~gl~~~~~---------g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       244 ARRDLAETGVPEPKT---------GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHcCCCchhc---------CchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            344566666654332         235678998                999999 799999999999988865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.10  E-value=0.19  Score=47.62  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      +++++|..+|+++++||+.   |+++.....+... .|.+++.+.|-.+...
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~-tGh~v~~T~Ha~~~~~  234 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALTAAE-TGHLVFGTLHTNSAAQ  234 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHH-cCCcEEEEEcCCCHHH
Confidence            4678999999999999997   8888777666644 4899999999877543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.07  E-value=0.2  Score=51.26  Aligned_cols=57  Identities=32%  Similarity=0.413  Sum_probs=45.1

Q ss_pred             CCCChhHHHHHH---HHHHHh--------cCC--CEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400        233 DVLSGGEKQRVA---MARLFY--------HRP--QFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH  289 (298)
Q Consensus       233 ~~LSgGqkQRla---iARaL~--------~~P--~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH  289 (298)
                      ..+||||||+++   +|.+|.        +.|  ..+||||+++-=|+.....++..+++.|.-.++||-
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~fglh~v~iTP 1058 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREFGLHAVFITP 1058 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHcCceEEEech
Confidence            469999999995   455553        234  368999999999999999999988888777777763

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=92.86  E-value=0.014  Score=57.83  Aligned_cols=52  Identities=12%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             CCCCChhHHHHHHHH--HHHhcCCCEEEEeccccCCCHHHHHHHHHH---HHhcCcEEEEEecCcch
Q psy11400        232 IDVLSGGEKQRVAMA--RLFYHRPQFAILDECTSAVSVDVEGSMYEY---CREVGITLFTVSHRKSL  293 (298)
Q Consensus       232 ~~~LSgGqkQRlaiA--RaL~~~P~iliLDEPTs~LD~~~~~~i~~~---l~~~~~TiIiitH~l~~  293 (298)
                      ...+|+|++|||.|+  .+|...|+..          ....+.+.++   +++.|+|+|+++|+.+.
T Consensus       113 ~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~  169 (484)
T TIGR02655       113 NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE  169 (484)
T ss_pred             HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            457999999999999  6666665544          2344444443   45569999999998753

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.86  E-value=0.083  Score=58.91  Aligned_cols=56  Identities=23%  Similarity=0.463  Sum_probs=45.1

Q ss_pred             CCCCChhHHHHHHHHHHHh--------c--------CC-CEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400        232 IDVLSGGEKQRVAMARLFY--------H--------RP-QFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS  288 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~--------~--------~P-~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit  288 (298)
                      ...||||||+.+.++..++        .        -| .+|+|||+ +.+|..+...++++++..|.-+|++|
T Consensus      1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~t 1435 (1486)
T PRK04863       1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAA 1435 (1486)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEec
Confidence            4579999998887665554        1        12 44699999 99999999999999998888777776

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=92.16  E-value=0.11  Score=50.80  Aligned_cols=66  Identities=6%  Similarity=-0.052  Sum_probs=45.9

Q ss_pred             cceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce---eec------------
Q psy11400        103 RSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT---VTK------------  163 (298)
Q Consensus       103 ~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~---i~~------------  163 (298)
                      ++++++ |++.+|++++|+        |+|  ||  |+++       +    .++.+++.+.   +..            
T Consensus       144 ~aID~l-l~I~~GQ~igI~--------G~sGaGKSTLl~~-------I----~g~~~~dv~vig~IGerg~ev~ef~~~~  203 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLM--------AGSGVGKSVLLGM-------I----TRYTQADVVVVGLIGERGREVKEFIEHS  203 (434)
T ss_pred             eeccce-EeEecceEEEEE--------CCCCCCccHHHHH-------H----hcccCCCeEEEEEEeeecHHHHHHHHHH
Confidence            389999 999999999999        999  99  7787       5    5555544321   100            


Q ss_pred             -----cCCCcEEEEcCcCCCC-CCCHHHHHc
Q psy11400        164 -----PPRGKLFYVPQRPYMT-LGTLRDQVI  188 (298)
Q Consensus       164 -----~~r~~i~~v~Q~~~l~-~~tv~eni~  188 (298)
                           ..+..+++++|+...+ ..++.++..
T Consensus       204 l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~  234 (434)
T PRK07196        204 LQAAGMAKSVVVAAPADESPLMRIKATELCH  234 (434)
T ss_pred             hhhcccceEEEEEecCCCChhhhHHHHHHHH
Confidence                 1244699999997554 345665553

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.11  E-value=0.37  Score=48.03  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             CCCCChhHHHHHHHHHH---HhcCC-----CEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        232 IDVLSGGEKQRVAMARL---FYHRP-----QFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARa---L~~~P-----~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      +..||-|+|.-++++-=   |..+|     +++++|.|.|++|.......+..+++   .++-+|+-||+--.
T Consensus       527 gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF  599 (758)
T COG4694         527 GNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYF  599 (758)
T ss_pred             cccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecccee
Confidence            34699999999987543   44555     57899999999999888877777665   47899999998543

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=91.49  E-value=0.37  Score=45.96  Aligned_cols=56  Identities=20%  Similarity=0.332  Sum_probs=44.5

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCc-EEEEEec
Q psy11400        233 DVLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGI-TLFTVSH  289 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~-TiIiitH  289 (298)
                      .-.|-||++-+++|.-|+         .+++||+|||-+|-||..-+..+.+. .+.+. +.|..|+
T Consensus       274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~~~Q~fvT~t~  339 (363)
T COG1195         274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IELGVQVFVTTTD  339 (363)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cccCCeEEEEccC
Confidence            358999999998887665         57899999999999999999999998 44444 4444443

>PRK15494 era GTPase Era; Provisional

Probab=90.54  E-value=0.11  Score=49.17  Aligned_cols=45  Identities=13%  Similarity=-0.033  Sum_probs=38.7

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCc-------EEEEeccCCcccCCCC--cc--eeec
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGAL-------NLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~-------~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      .+.+++++++|.|+....        +++.++|+++.|+       .++++        |..  ||  |++.
T Consensus        16 ~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~k~~kV~iv--------G~~nvGKSTLin~   71 (339)
T PRK15494         16 KGDTEALAAAVREDASTG--------STSKLPLEVKFGKMSNQKTVSVCII--------GRPNSGKSTLLNR   71 (339)
T ss_pred             CCccccccccccCCCCcc--------cccCCccccccccccccceeEEEEE--------cCCCCCHHHHHHH
Confidence            467899999999984433        8999999999999       99999        998  99  6665

>PRK01889 GTPase RsgA; Reviewed

Probab=90.53  E-value=0.088  Score=50.20  Aligned_cols=68  Identities=13%  Similarity=-0.022  Sum_probs=51.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc--------CCCcEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------PRGKLFY  171 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------~r~~i~~  171 (298)
                      -++.+.-.+++|++++++        |+|  ||  |++.       +    .|...+..|++...        ...++++
T Consensus       184 gl~~L~~~L~~g~~~~lv--------G~sgvGKStLin~-------L----~g~~~~~~G~i~~~~~~g~~tt~~~~l~~  244 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALL--------GSSGVGKSTLVNA-------L----LGEEVQKTGAVREDDSKGRHTTTHRELHP  244 (356)
T ss_pred             cHHHHHHHhhcCCEEEEE--------CCCCccHHHHHHH-------H----HHhcccceeeEEECCCCCcchhhhccEEE
Confidence            355566667899999999        999  99  8888       7    77777888887532        2357999


Q ss_pred             EcCcCCCCCCCHHHHHccC
Q psy11400        172 VPQRPYMTLGTLRDQVIYP  190 (298)
Q Consensus       172 v~Q~~~l~~~tv~eni~~~  190 (298)
                      ++|..+++......++.+.
T Consensus       245 l~~~~~l~DtpG~~~~~l~  263 (356)
T PRK01889        245 LPSGGLLIDTPGMRELQLW  263 (356)
T ss_pred             ecCCCeecCCCchhhhccc
Confidence            9999888776555555543

>PLN03210 Resistant to P

Probab=90.29  E-value=0.28  Score=53.81  Aligned_cols=51  Identities=18%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH--hcCcEEEEEecCcchhhh
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR--EVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~--~~~~TiIiitH~l~~~~~  296 (298)
                      ++.++|      |..++-+++||+...   ....+.+.....  ..|.+||++||+...+..
T Consensus       287 ~~~~~~------L~~krvLLVLDdv~~---~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~  339 (1153)
T PLN03210        287 GAMEER------LKHRKVLIFIDDLDD---QDVLDALAGQTQWFGSGSRIIVITKDKHFLRA  339 (1153)
T ss_pred             HHHHHH------HhCCeEEEEEeCCCC---HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence            555655      446777889998532   222222222211  137899999999887654

syringae 6; Provisional

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=90.10  E-value=0.19  Score=43.07  Aligned_cols=67  Identities=19%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------cCCCcEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------PPRGKLFY  171 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------~~r~~i~~  171 (298)
                      ..+=+.+.+++|+.++|+        ||+  ||  +++.       +    .++++++.|.+..        +.+..+++
T Consensus        14 ~~~~l~~~v~~g~~i~I~--------G~tGSGKTTll~a-------L----~~~i~~~~~~i~ied~~E~~~~~~~~~~~   74 (186)
T cd01130          14 QAAYLWLAVEARKNILIS--------GGTGSGKTTLLNA-------L----LAFIPPDERIITIEDTAELQLPHPNWVRL   74 (186)
T ss_pred             HHHHHHHHHhCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhcCCCCCEEEECCccccCCCCCCEEEE
Confidence            344467789999999999        999  99  8888       7    8888888887642        12344666


Q ss_pred             EcCcCCC---CCCCHHHHHcc
Q psy11400        172 VPQRPYM---TLGTLRDQVIY  189 (298)
Q Consensus       172 v~Q~~~l---~~~tv~eni~~  189 (298)
                      ++|.+..   ...+..+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~l~~   95 (186)
T cd01130          75 VTRPGNVEGSGEVTMADLLRS   95 (186)
T ss_pred             EEecCCCCCCCccCHHHHHHH
Confidence            6665432   23477776643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=89.56  E-value=0.22  Score=48.76  Aligned_cols=54  Identities=17%  Similarity=-0.049  Sum_probs=40.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++.++++..+..+-.        +++++ |.+.+|++++|+        |+|  ||  |+++       +    .+...
T Consensus       129 ~~~r~~v~~~l~tGi~--------aID~l-l~i~~GqrigI~--------G~sG~GKSTLL~~-------I----~~~~~  180 (433)
T PRK07594        129 AMVRQPITQPLMTGIR--------AIDSV-ATCGEGQRVGIF--------SAPGVGKSTLLAM-------L----CNAPD  180 (433)
T ss_pred             ceeccCHhheeCCCce--------eeeee-eecCCCCEEEEE--------CCCCCCccHHHHH-------h----cCCCC
Confidence            4566666666654433        89999 999999999999        999  99  7777       6    66655


Q ss_pred             cCCcee
Q psy11400        156 LFGGTV  161 (298)
Q Consensus       156 ~~~G~i  161 (298)
                      ++.|.+
T Consensus       181 ~d~~vi  186 (433)
T PRK07594        181 ADSNVL  186 (433)
T ss_pred             CCEEEE
Confidence            555543

>PF00488 MutS_V: MutS domain V C-terminus

Probab=89.32  E-value=2  Score=38.43  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             hcCCCEEEEeccccCCCHHHH----HHHHHHHHh-cCcEEEEEecCcchhh
Q psy11400        250 YHRPQFAILDECTSAVSVDVE----GSMYEYCRE-VGITLFTVSHRKSLWT  295 (298)
Q Consensus       250 ~~~P~iliLDEPTs~LD~~~~----~~i~~~l~~-~~~TiIiitH~l~~~~  295 (298)
                      ..+..++|+||...|=++..-    ..+.+.+.+ .+..+|++||..++.+
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            356779999999999987533    345566665 5889999999998754

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK11098 microcin B17 transporter; Reviewed

Probab=88.72  E-value=1.5  Score=42.55  Aligned_cols=49  Identities=8%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLN   52 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~   52 (298)
                      .+.++.....+.++.++++++++.+.+++++.+..+|+.++.+.+++.+
T Consensus       352 lG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l~~~~  400 (409)
T PRK11098        352 LGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAALDGEP  400 (409)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4678888999999999999999999999999999999999999987654

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=88.46  E-value=2.5  Score=38.03  Aligned_cols=50  Identities=26%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             HHHHHHHHHh--cCCCEEEEeccccCCCHH--------HHHH----HHHHHHhcCcEEEEEecC
Q psy11400        241 QRVAMARLFY--HRPQFAILDECTSAVSVD--------VEGS----MYEYCREVGITLFTVSHR  290 (298)
Q Consensus       241 QRlaiARaL~--~~P~iliLDEPTs~LD~~--------~~~~----i~~~l~~~~~TiIiitH~  290 (298)
                      .-+..++.++  .+|+++|+|..+.-.+..        ....    +.++.++.++|+++++|-
T Consensus       127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~  190 (271)
T cd01122         127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL  190 (271)
T ss_pred             HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence            4445555554  479999999987754321        1123    333345679999999984

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=87.67  E-value=2  Score=41.31  Aligned_cols=23  Identities=13%  Similarity=-0.102  Sum_probs=21.3

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK  134 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK  134 (298)
                      ++++.++.+++|++++++        ||+  ||
T Consensus       126 ~~~~~~~~~~~g~ii~lv--------GptGvGK  150 (374)
T PRK14722        126 VLDSEDALMERGGVFALM--------GPTGVGK  150 (374)
T ss_pred             hhcCCCccccCCcEEEEE--------CCCCCCH
Confidence            677888899999999999        999  99

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-09
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		8e-08
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		9e-08
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-07
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-07
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-07
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		4e-07
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-06
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		3e-06
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-06
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-06
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		3e-06
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		6e-06
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		7e-06
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		7e-06
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-05
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		1e-05
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		1e-05
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		2e-05
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		2e-05
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-05
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		2e-05
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		3e-05
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		4e-05
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		4e-05
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		6e-05
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		7e-05
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		8e-05
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		9e-05
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		9e-05
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-04
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		2e-04
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-04
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-04
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		3e-04
1g29_1	372	Malk Length = 372		4e-04

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG----YILNREKGWDT-VADWIDVLSGG 238
           +D +++  T ++ I  G   A   E ++  ++     +I+N  +G+DT V +    LSGG
Sbjct: 422 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGI--TLFTVSHRKSLWTH 296
           +KQR+++AR+F + P   ILDE TSA+ ++ E  + E    +    T   V+HR S  TH
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541
Query: 297 HE 298
            +
Sbjct: 542 AD 543

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 163 KPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNR 221
           K  RG +  VPQ   +  GT+++ + +   +ED      TD ++ E  +  Q+  +I++ 
Sbjct: 413 KDLRGHISAVPQETVLFSGTIKENLKW--GREDA-----TDDEIVEAAKIAQIHDFIISL 465
Query: 222 EKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV 280
            +G+D+ V       SGG+KQR+++AR    +P+  ILD+CTS+V    E  + +  +  
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525
Query: 281 --GITLFTVSHR 290
             G T F ++ +
Sbjct: 526 TKGCTTFIITQK 537

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-----LGYILN 220
           R K+  V Q P +   ++ + + Y       +          E +Q+V      + +I N
Sbjct: 417 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVT--------AEEIQRVAEVANAVAFIRN 468
Query: 221 REKGWDTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279
             +G++TV     VL SGG+KQR+A+AR     P+  +LDE TSA+  + E  + E    
Sbjct: 469 FPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528
Query: 280 V--GITLFTVSHRKS 292
           +  G T+  ++HR S
Sbjct: 529 LMDGRTVLVIAHRLS 543

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 166  RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
            R ++  V Q P +   ++ + +IY      +    +T A + E  +   +  +I    +G
Sbjct: 1152 RSQIAIVSQEPTLFDCSIAENIIY-----GLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206
Query: 225  WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY---CREV 280
            ++T V D    LSGG+KQR+A+AR     P+  +LDE TSA+  + E  + E     RE 
Sbjct: 1207 FETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE- 1265
Query: 281  GITLFTVSHR 290
            G T   ++HR
Sbjct: 1266 GRTCIVIAHR 1275

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTV 228
           V Q P +   T+ + + Y       D I+K + +A+  +++ K+   +  L  E+G    
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-- 526
Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---SMYEYCREVGITLF 285
                 LSGG+KQR+A+AR     P+  +LDE TSA+  + E    +  +  RE G T  
Sbjct: 527 ------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTI 579
Query: 286 TVSHRKS 292
            ++HR S
Sbjct: 580 VIAHRLS 586

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTV 228
           V Q P +   T+ + + Y       D I+K + +A+  +++ K+   +  L  E+G    
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-- 526
Query: 229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---SMYEYCREVGITLF 285
                 LSGG+KQR+A+AR     P+  +LDE TSA+  + E    +  +  RE G T  
Sbjct: 527 ------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTI 579
Query: 286 TVSHRKS 292
            ++HR S
Sbjct: 580 VIAHRLS 586

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-----LGYILN 220
           R K+  V Q P +   ++ + + Y       +          E +Q+V      + +I N
Sbjct: 448 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVT--------AEEIQRVAEVANAVAFIRN 499
Query: 221 REKGWDTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279
             +G++TV     VL SGG+KQR+A+AR     P+  +LDE TSA+  + E  + E    
Sbjct: 500 FPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 559
Query: 280 V--GITLFTVSHRKS 292
           +  G T+  ++H  S
Sbjct: 560 LMDGRTVLVIAHHLS 574

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 172 VPQRPYMTLGTLRDQVIY---PHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228
           VPQ   +   T++  ++Y     T E++I K    A L ++++ +         K WDT+
Sbjct: 98  VPQDTILFNETIKYNILYGKLDATDEEVI-KATKSAQLYDFIEALP--------KKWDTI 148
Query: 229 ADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLF 285
                + LSGGE+QR+A+AR     P+  I DE TS++    E    +   ++    TL 
Sbjct: 149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLI 208
Query: 286 TVSHRKSLWTHHE 298
            ++HR S  +  E
Sbjct: 209 IIAHRLSTISSAE 221

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA+  + E     
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++HR S
Sbjct: 183 NMHKICK--GRTVIIIAHRLS 201

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA+  + E     
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++HR S
Sbjct: 181 NMHKICK--GRTVIIIAHRLS 199

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA+  + E     
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++HR S
Sbjct: 187 NMHKICK--GRTVIIIAHRLS 205

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA+  + E     
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++HR S
Sbjct: 183 NMHKICK--GRTVIIIAHRLS 201

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++  V Q  ++   T+ + + Y  T E+  ++ I +A    Y     + +I   + G 
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAY----AMDFINKMDNGL 470
Query: 226 DTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GI 282
           DT+     VL SGG++QR+A+AR         ILDE TSA+  + E ++     E+    
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 283 TLFTVSHRKS 292
           T   ++HR S
Sbjct: 531 TSLVIAHRLS 540

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I D+ TSA+  + E     
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++HR S
Sbjct: 187 NMHKICK--GRTVIIIAHRLS 205

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++  V Q  ++   T+ + + Y  T E   ++ I +A    Y     + +I   + G 
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYART-EQYSREQIEEAARMAY----AMDFINKMDNGL 470
Query: 226 DTVADWIDVL-SGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GI 282
           DTV     VL SGG++QR+A+AR         ILDE TSA+  + E ++     E+    
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 283 TLFTVSHRKS 292
           T   ++HR S
Sbjct: 531 TSLVIAHRLS 540

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT-VAD 230
           V Q P +   + R+ + Y  T+   +++ IT   +          +I    +G+DT V +
Sbjct: 98  VGQEPLLFGRSFRENIAYGLTRTPTMEE-ITAVAMESGAHD----FISGFPQGYDTEVGE 152
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFT 286
             + LSGG++Q VA+AR    +P+  ILD+ TSA+       V+  +YE       T+  
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 287 VSHRKSLW--THH 297
           ++H+ SL    HH
Sbjct: 213 ITHQLSLAERAHH 225

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
           +K+ + ++L+R+            LSGGE+QRVA+AR    +P+  +LDE  SAV +  +
Sbjct: 112 EKLGIAHLLDRKPAR---------LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 271 GSMYEYC----REVGITLFTVSH 289
           G + E      RE  + +  V+H
Sbjct: 163 GVLMEELRFVQREFDVPILHVTH 185

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQ-KVQLGYILNREKG 224
           R ++ +V Q   +  GT+R+ + Y       ++   TD DL + L       ++ N    
Sbjct: 75  RSQIGFVSQDSAIMAGTIRENLTYG------LEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
            +T V +    +SGG++QR+A+AR F   P+  +LDE T+++  + E  + +    +  G
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 282 ITLFTVSHRKS 292
            T   ++HR S
Sbjct: 189 RTTLVIAHRLS 199

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
            +A   E L KV L          D    + D LSGG+ QRVA+AR     P+  + DE 
Sbjct: 136 AEAKAMELLDKVGL---------KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 262 TSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
           TSA+  ++ G +    +++   G+T+  V+H 
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 193 KEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR 252
           +E  + K   DA + E L+ ++L    NR         +   LSGG++QRVA+AR    R
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLESYANR---------FPHELSGGQQQRVALARALAPR 163
Query: 253 PQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           PQ  + DE  +A+   +   +  + R+V    G+T   V+H
Sbjct: 164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKE---DMIQKGITDADLTEYLQKVQLGYILNREKGWDTV 228
           V Q  ++   T+ + + Y    E   + I++    A   E+++        N  +G DTV
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE--------NMPQGLDTV 473
Query: 229 -ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLF 285
             +    LSGG++QRVA+AR         ILDE TSA+  + E ++     E+    T+ 
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVL 533
Query: 286 TVSHRKS 292
            ++HR S
Sbjct: 534 VIAHRLS 540

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 202 TDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC 261
            +A   E L KV L          D    + D LSGG+ QRVA+AR     P+  + DE 
Sbjct: 115 AEAKAMELLDKVGL---------KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 165
Query: 262 TSAVSVDVEGSMYEYCREV---GITLFTVSHR 290
           TSA+  ++ G +    +++   G+T+  V+H 
Sbjct: 166 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTK--EDMIQKGITDADLTEYLQKVQLGYILN-RE 222
           R  +  VPQ   +   T+ D + Y       D ++     A + + +     GY     E
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186
Query: 223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCR 278
           +G          LSGGEKQRVA+AR     P   +LDE TSA+       ++ S+ + C 
Sbjct: 187 RGLK--------LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC- 237
Query: 279 EVGITLFTVSHRKS 292
               T   V+HR S
Sbjct: 238 -ANRTTIVVAHRLS 250

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
           LSGG+KQRVA+AR     P+  + DE TSA+      S+ E  +++    G+T+  ++H 
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA+  + E     
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++ R S
Sbjct: 181 NMHKICK--GRTVIIIAARLS 199

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 217 YILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG---- 271
           +I    +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA+  + E     
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 272 SMYEYCREVGITLFTVSHRKS 292
           +M++ C+  G T+  ++ R S
Sbjct: 187 NMHKICK--GRTVIIIAARLS 205

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           LSGG++QRVA+AR     P   +LDE  S +   +  S     +EV    G+TL  VSH
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 168 KLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT 227
           ++  V Q P +   +L++ + Y  T++  +++ IT A +          +I    +G+DT
Sbjct: 92  QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE-ITAAAVKSGAHS----FISGLPQGYDT 146
Query: 228 VADWI-DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGI 282
             D     LSGG++Q VA+AR    +P   ILD+ TSA+  +    VE  +YE       
Sbjct: 147 EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 206
Query: 283 TLFTVSHRKSL 293
           ++  ++   SL
Sbjct: 207 SVLLITQHLSL 217

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
           LSGG+KQRVA+AR     P+  + D+ TSA+      S+ E  +++    G+T+  ++H 
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKED-----MIQKG--ITDADLTEYLQKVQLGYI 218
           +G + YVPQ+ ++   +LR+ +++    E+     +IQ    + D ++     + ++G  
Sbjct: 65  KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG-- 122
Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYE 275
              EKG +        LSGG+KQRV++AR  Y      + D+  SAV   V   ++E
Sbjct: 123 ---EKGVN--------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHR 290
           LSGG+KQRVA+AR     P+  + D+ TSA+      S+ E  +++    G+T+  ++H 
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT-VAD 230
           V Q P +   + R+ + Y  T+   +++ IT   +          +I    +G+DT V +
Sbjct: 98  VGQEPLLFGRSFRENIAYGLTRTPTMEE-ITAVAMESGAHD----FISGFPQGYDTEVGE 152
Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREVGITLFT 286
             + LSGG++Q VA+AR    +P+  ILD  TSA+       V+  +YE       T+  
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 287 VSHRKSLW--THH 297
           ++ + SL    HH
Sbjct: 213 ITQQLSLAERAHH 225

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSHR 290
           LSGG++QRVA+AR     P+  +LDE  S +     ++V   +    +E+GIT   V+H 
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 291 KS 292
           ++
Sbjct: 194 QA 195

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 225 WDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS-----MYEYCR 278
           +D+  D +   LSGGEK+RVA+A +  H P   ILDE    V +D EG      + E  +
Sbjct: 128 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE--PLVGLDREGKTDLLRIVEKWK 185
Query: 279 EVGITLFTVSHRKSLWTHH 297
            +G T+  +SH      +H
Sbjct: 186 TLGKTVILISHDIETVINH 204

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 225 WDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS-----MYEYCR 278
           +D+  D +   LSGGEK+RVA+A +  H P   ILDE    V +D EG      + E  +
Sbjct: 130 FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE--PLVGLDREGKTDLLRIVEKWK 187
Query: 279 EVGITLFTVSHRKSLWTHH 297
            +G T+  +SH      +H
Sbjct: 188 TLGKTVILISHDIETVINH 206

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
           LSG ++QRVA+AR     P   +LDE  S +   +  S     +EV    G+TL  VSH
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 161 VTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT----------KEDMIQKGITDADLTEYL 210
           V  P +G   +VP +        +   +YPH           K   + K   D  + E  
Sbjct: 70  VADPEKG--VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVA 127
Query: 211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS---- 266
           + + L  +LNR+            LSGG++QRVA+ R    RP+  + DE  S +     
Sbjct: 128 EXLGLTELLNRKPRE---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLR 178
Query: 267 VDVEGSMYEYCREVGITLFTVSH 289
           V     + +  R++G+T   V+H
Sbjct: 179 VKXRAELKKLQRQLGVTTIYVTH 201

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 176 PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVL 235
           P+MT+    D + +P     + ++ I D  + E  + + L  +LNR+            L
Sbjct: 94  PHMTV---YDNIAFPLKLRKVPRQEI-DQRVREVAELLGLTELLNRKPRE---------L 140
Query: 236 SGGEKQRVAMARLFYHRPQFAILDECTSAVS----VDVEGSMYEYCREVGITLFTVSH 289
           SGG++QRVA+ R    +PQ  ++DE  S +     V +   + +  R++G+T   V+H
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	3e-12
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	9e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	6e-10
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-10
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	5e-08
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-09
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	3e-09
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	4e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-07
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-09
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	8e-08
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-07
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-06
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	4e-07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	6e-07
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	7e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	8e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-06
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	8e-06
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-05
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	3e-05
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-04
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	3e-04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	5e-04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	7e-04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	8e-04

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 27/139 (19%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R  +  VPQ   +   T+ D + Y       D ++     A + +         I+   +
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA--------IMAFPE 178

Query: 224 GWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE----GSM 273
           G+ T      V      LSGGEKQRVA+AR     P   +LDE TSA+    E     S+
Sbjct: 179 GYRTQ-----VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233

Query: 274 YEYCREVGITLFTVSHRKS 292
            + C     T   V+HR S
Sbjct: 234 AKVCA--NRTTIVVAHRLS 250

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 23/137 (16%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R  +  VPQ   +   T++  ++Y      ++ + K    A L ++        I    K
Sbjct: 92  RSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDF--------IEALPK 143

Query: 224 GWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
            WDT+     V      LSGGE+QR+A+AR     P+  I DE TS++    E    +  
Sbjct: 144 KWDTI-----VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAV 198

Query: 278 REV--GITLFTVSHRKS 292
            ++    TL  ++HR S
Sbjct: 199 EDLRKNRTLIIIAHRLS 215

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 33/143 (23%)

Query: 158 GGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADL-----TEYLQK 212
            G     P+  +   PQ+             +P T   +  K I    L     T+ ++ 
Sbjct: 406 EGQDI--PKLNVSMKPQKIAP---------KFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454

Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE-- 270
           +++  I+++E         +  LSGGE QRVA+           ++DE ++   +D E  
Sbjct: 455 LRIDDIIDQE---------VQHLSGGELQRVAIVLALGIPADIYLIDEPSAY--LDSEQR 503

Query: 271 ----GSMYEYCREVGITLFTVSH 289
                 +  +      T F V H
Sbjct: 504 IICSKVIRRFILHNKKTAFIVEH 526

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 24/136 (17%)

Query: 159 GTVTKPPRGKLFYVPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGY 217
             + KP      YV   P    G ++    +     E   +      D+  Y++ +QL  
Sbjct: 165 KAIIKPQ-----YVDNIPRAIKGPVQKVGELLKLRMEKSPE------DVKRYIKILQLEN 213

Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
           +L R+         I+ LSGGE QR A+           + DE +S + V    +  +  
Sbjct: 214 VLKRD---------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264

Query: 278 REV---GITLFTVSHR 290
           R +      +  V H 
Sbjct: 265 RSLLAPTKYVICVEHD 280

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIY--PHTKEDMIQKGITDADLTEYLQKVQLGYILNREK 223
           R  +  V Q P +   T+ + + Y       D I+K + +A+  +++ K+   +      
Sbjct: 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF------ 516

Query: 224 GWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
             DT V +    LSGG+KQR+A+AR     P+  +LDE TSA+  + E  +     +   
Sbjct: 517 --DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574

Query: 281 GITLFTVSHRKS 292
           G T   ++HR S
Sbjct: 575 GRTTIVIAHRLS 586

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 166  RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
            R +L  V Q P +   ++ + + Y           ++  ++    ++  +  +I +    
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRV-----VSYEEIVRAAKEANIHQFIDSLPDK 1160

Query: 225  WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
            ++T V D    LSGG+KQR+A+AR    +P   +LDE TSA
Sbjct: 1161 YNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 29/141 (20%)

Query: 158 GGTVTKPPRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDAD-LTEYLQK 212
            G V       + Y PQ        T+     +++       +    +      TE L+ 
Sbjct: 410 EGKVE--WDLTVAYKPQYIKAEYEGTVY----ELL-----SKIDSSKLNSNFYKTELLKP 458

Query: 213 VQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA----VSVD 268
           + +  + +R          ++ LSGGE QRVA+A          +LDE ++       + 
Sbjct: 459 LGIIDLYDRN---------VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509

Query: 269 VEGSMYEYCREVGITLFTVSH 289
           V  ++     +   T   V H
Sbjct: 510 VSRAIRHLMEKNEKTALVVEH 530

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 32/135 (23%)

Query: 167 GKLFYVPQRPY------MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220
           G++  V +  Y         G +R+ +     K D + K        E +++++L  +L+
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELL----KKVDEVGK------FEEVVKELELENVLD 223

Query: 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY-----E 275
           RE         +  LSGGE QRVA+A     +  F   DE +S   +D+   +       
Sbjct: 224 RE---------LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY--LDIRQRLKVARVIR 272

Query: 276 YCREVGITLFTVSHR 290
                G  +  V H 
Sbjct: 273 RLANEGKAVLVVEHD 287

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVAD 230
            +      T+    +                      E  +++ L  +L           
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFF-------EEVTKRLNLHRLLESN-------- 382

Query: 231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY-------EYCREVGIT 283
            ++ LSGGE Q++ +A          +LD+ +S   +DVE   Y          RE    
Sbjct: 383 -VNDLSGGELQKLYIAATLAKEADLYVLDQPSSY--LDVE-ERYIVAKAIKRVTRERKAV 438

Query: 284 LFTVSH 289
            F + H
Sbjct: 439 TFIIDH 444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 159 GTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI 218
            +       K+ YV        GT+ +      TK D   K        E  + + +  +
Sbjct: 82  YSNELKIVHKIQYVEYASKFLKGTVNEI----LTKIDERGK------KDEVKELLNMTNL 131

Query: 219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR 278
            N++          ++LSGG  QR+ +A          I D+ +S + V    +M +  R
Sbjct: 132 WNKD---------ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182

Query: 279 EV--GITLFTVSHR 290
           E+     +  V H 
Sbjct: 183 ELLKNKYVIVVDHD 196

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 20/112 (17%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
           R ++ +V Q   +  GT+R+ + Y    +       TD DL + L       ++ N    
Sbjct: 75  RSQIGFVSQDSAIMAGTIRENLTYGLEGD------YTDEDLWQVLDLAFARSFVENMPDQ 128

Query: 225 WDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
            +T      V      +SGG++QR+A+AR F   P+  +LDE T++  +D E
Sbjct: 129 LNTE-----VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS--LDSE 173

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 17/137 (12%)

Query: 156 LFGGTVTKPPRGKLFYVPQRP-YMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKV 213
              G   +  R  + Y    P    +G T+ D V           KG+      E L+ +
Sbjct: 61  FINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLY-----EELKGLDRDLFLEMLKAL 115

Query: 214 QLG-YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGS 272
           +LG  IL R+         +  LS G+   V  +     +P+   LDE    V       
Sbjct: 116 KLGEEILRRK---------LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166

Query: 273 MYEYCREVGITLFTVSH 289
           +  Y +E G     V+H
Sbjct: 167 ISRYIKEYGKEGILVTH 183

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKG 224
           R     +PQ+ ++  GT R  +  P+          +D ++ +   +V L   I      
Sbjct: 93  RKAFGVIPQKVFIFSGTFRKNLD-PNAAH-------SDQEIWKVADEVGLRSVIEQFPGK 144

Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
            D  + D   VLS G KQ + +AR    + +  +LDE ++   +D  
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA--HLDPV 189

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 32/136 (23%)

Query: 161 VTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN 220
             KP   K     +    T+  L  ++       +  +        TE L+ + +  + +
Sbjct: 350 AYKPQYIKA--DYE---GTVYELLSKIDASKLNSNFYK--------TELLKPLGIIDLYD 396

Query: 221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY------ 274
           RE         ++ LSGGE QRVA+A          +LDE ++   +DVE          
Sbjct: 397 RE---------VNELSGGELQRVAIAATLLRDADIYLLDEPSAY--LDVE-QRLAVSRAI 444

Query: 275 -EYCREVGITLFTVSH 289
                +   T   V H
Sbjct: 445 RHLMEKNEKTALVVEH 460

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 17/100 (17%)

Query: 167 GKLFYVPQRPYMTL--GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG 224
           G++  V +  Y+ L    ++ +VI    K D   K      L E ++ ++L  +L RE  
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK------LEEVVKALELENVLERE-- 155

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
                  I  LSGGE QRVA+A        F   DE +S 
Sbjct: 156 -------IQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 25/138 (18%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL----GYILNR 221
           R ++  V Q   +   ++ D +                  + + +   +L     +I   
Sbjct: 82  RRQVGVVLQDNVLLNRSIIDNISL----------ANPGMSVEKVIYAAKLAGAHDFISEL 131

Query: 222 EKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE------GSMY 274
            +G++T V +    LSGG++QR+A+AR   + P+  I DE TSA  +D E       +M+
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA--LDYESEHVIMRNMH 189

Query: 275 EYCREVGITLFTVSHRKS 292
           + C+  G T+  ++HR S
Sbjct: 190 KICK--GRTVIIIAHRLS 205

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 19/107 (17%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNREKG 224
           RG +  VPQ   +  GT+++ + +   +ED      TD ++ E  +  Q   +I++  +G
Sbjct: 416 RGHISAVPQETVLFSGTIKENLKW--GRED-----ATDDEIVEAAKIAQIHDFIISLPEG 468

Query: 225 WDTVADWIDV------LSGGEKQRVAMARLFYHRPQFAILDECTSAV 265
           +D+      V       SGG+KQR+++AR    +P+  ILD+CTS+V
Sbjct: 469 YDSR-----VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 37/137 (27%)

Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI--------YPHT------KEDMIQKG 200
               G +     G++ +  Q  ++  GT+++ +I        Y         +ED+ +  
Sbjct: 89  EPSEGKIKH--SGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISK-- 144

Query: 201 ITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE 260
             + D         LG     E G       I  LSGG++ R+++AR  Y      +LD 
Sbjct: 145 FAEKDNIV------LG-----EGG-------IT-LSGGQRARISLARAVYKDADLYLLDS 185

Query: 261 CTSAVSVDVEGSMYEYC 277
               + V  E  ++E C
Sbjct: 186 PFGYLDVLTEKEIFESC 202

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 38/139 (27%)

Query: 166 RGKLFYVPQRP--YMTLGTLRDQVIY-------PHTKEDMIQKGITDADLTEYLQKVQLG 216
           +GK+F++P+       + ++ D +            K + I   +   ++ +  +K    
Sbjct: 77  KGKIFFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNE-IMDALESVEVLDLKKK---- 130

Query: 217 YILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG----- 271
                          +  LS G  +RV +A       +  +LD+    V++D +      
Sbjct: 131 ---------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPV--VAIDEDSKHKVL 173

Query: 272 -SMYEYCREVGITLFTVSH 289
            S+ E  +E GI + +   
Sbjct: 174 KSILEILKEKGIVIISSRE 192

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 23/134 (17%)

Query: 167 GKLFYVPQRPYMTLG-TLRDQVI---YPHTKEDMIQKGITDADL---TEYLQKVQLGYIL 219
             + +VPQ        ++ D V+     H             D     + L  + L ++ 
Sbjct: 66  QSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN---TFAKPKSHDYQVAMQALDYLNLTHLA 122

Query: 220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYE 275
            RE            LSGG++Q + +AR      +  +LDE TSA+       V   + +
Sbjct: 123 KRE---------FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173

Query: 276 YCREVGITLFTVSH 289
             +   +T+   +H
Sbjct: 174 LAQSQNMTVVFTTH 187

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR 242
           +  +V           + +T  ++ E+     LG  L+ E    +    I  LSGG+K +
Sbjct: 857 MVAEVDMKEALASGQFRPLTRKEIEEHCS--MLG--LDPEIVSHSR---IRGLSGGQKVK 909

Query: 243 VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
           + +A   + RP   +LDE T+ +  D  G++ +  +E    +  ++H
Sbjct: 910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 956

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 46.6 bits (110), Expect = 7e-06
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH 289
           I  LSGG K ++A+AR         +LDE T+ +       +  Y    GIT  T+SH
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHT-KEDMIQKGITDADLTEYLQ-- 211
               G +     G++ +  Q  ++  GT+++ +I+  +  E   +  I    L E +   
Sbjct: 59  EPSEGKIKH--SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116

Query: 212 ----KVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
                + LG     E G       I  LSGG++ R+++AR  Y      +LD     + V
Sbjct: 117 AEKDNIVLG-----EGG-------IT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163

Query: 268 DVEGSMYEYC 277
             E  ++E C
Sbjct: 164 LTEKEIFESC 173

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 34/129 (26%)

Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD 203
             L  LR      F              V Q  ++   T+ + + Y    E       T 
Sbjct: 410 YKLTNLRRH----FA------------LVSQNVHLFNDTIANNIAYAAEGE------YTR 447

Query: 204 ADLTEYLQKVQL-GYILNREKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFA 256
             + +  ++     +I N  +G DTV     +      LSGG++QRVA+AR         
Sbjct: 448 EQIEQAARQAHAMEFIENMPQGLDTV-----IGENGTSLSGGQRQRVAIARALLRDAPVL 502

Query: 257 ILDECTSAV 265
           ILDE TSA+
Sbjct: 503 ILDEATSAL 511

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 42/140 (30%)

Query: 155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIY--PHTKE---------------DMI 197
               G V    +G + YVPQ+ ++   +LR+ +++     +                +++
Sbjct: 56  DKVEGHVAI--KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEIL 113

Query: 198 QKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI 257
             G    D TE      +G     EKG       ++ LSGG+KQRV++AR  Y      +
Sbjct: 114 PSG----DRTE------IG-----EKG-------VN-LSGGQKQRVSLARAVYSNADIYL 150

Query: 258 LDECTSAVSVDVEGSMYEYC 277
            D+  SAV   V   ++E  
Sbjct: 151 FDDPLSAVDAHVGKHIFENV 170

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 35/129 (27%)

Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD 203
              G+LR+Q     G             V Q   +   T+++ ++    +        TD
Sbjct: 408 FLTGSLRNQ----IG------------LVQQDNILFSDTVKENILL--GRPT-----ATD 444

Query: 204 ADLTEYLQKVQL-GYILNREKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFA 256
            ++ E  +      +I+N  +G+DT      V      LSGG+KQR+++AR+F + P   
Sbjct: 445 EEVVEAAKMANAHDFIMNLPQGYDTE-----VGERGVKLSGGQKQRLSIARIFLNNPPIL 499

Query: 257 ILDECTSAV 265
           ILDE TSA+
Sbjct: 500 ILDEATSAL 508

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD------VEGSMYEYCREVGITLFTVS 288
           LSGG++Q VA+AR    +P+  ILD  TSA  +D      V+  +YE       T+  ++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSA--LDAGNQLRVQRLLYESPEWASRTVLLIT 214

Query: 289 HRKS 292
            + S
Sbjct: 215 QQLS 218

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 32/133 (24%)

Query: 171 YVPQRPYMTLG-TLRDQVI---YPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD 226
           Y+ Q+        +   +    +  T+ +++          +    + L   L R     
Sbjct: 77  YLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------DVAGALALDDKLGRS---- 123

Query: 227 TVADWIDVLSGGEKQRVAMAR-------LFYHRPQFAILDECTSAVSVDVEGSMYEYCRE 279
                 + LSGGE QRV +A              Q  +LDE  +++ V  + ++ +    
Sbjct: 124 -----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178

Query: 280 V---GITLFTVSH 289
           +   G+ +   SH
Sbjct: 179 LSQQGLAIVMSSH 191

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 34/129 (26%)

Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITD 203
            TL +LR+Q                   V Q  ++   T+ + + Y  T+E       + 
Sbjct: 410 YTLASLRNQ----VA------------LVSQNVHLFNDTVANNIAYARTEE------YSR 447

Query: 204 ADLTEYLQKVQL-GYILNREKGWDTVADWIDV------LSGGEKQRVAMARLFYHRPQFA 256
             + E  +      +I   + G DT+     +      LSGG++QR+A+AR         
Sbjct: 448 EQIEEAARMAYAMDFINKMDNGLDTI-----IGENGVLLSGGQRQRIAIARALLRDSPIL 502

Query: 257 ILDECTSAV 265
           ILDE TSA+
Sbjct: 503 ILDEATSAL 511

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 13/86 (15%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           E  +K+ + ++L+R+            LSGGE+QRVA+AR    +P+  +LDE  SAV +
Sbjct: 109 EMAEKLGIAHLLDRK---------PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159

Query: 268 DVEGSM----YEYCREVGITLFTVSH 289
             +G +        RE  + +  V+H
Sbjct: 160 KTKGVLMEELRFVQREFDVPILHVTH 185

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTS----AVSVDVEGSMYEYCREVGITLFTVSH 289
           LS G+K+RVA+A +    P+  ILDE T+        ++   + E  +E+GIT+   +H
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           + L+ V +     +          I  LS GEKQRV +AR    +PQ  ILDE  + +  
Sbjct: 144 QLLKLVGMSAKAQQY---------IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF 194

Query: 268 DVEGSMYEYCREV-----GITLFTVSHR 290
               S+      +      + +  V+H 
Sbjct: 195 IARESLLSILDSLSDSYPTLAMIYVTHF 222

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG-----SMYEYCREVGITLFTVSH 289
           LSGGEK+RVA+A +  H P   ILDE      +D EG      + E  + +G T+  +SH
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVG--LDREGKTDLLRIVEKWKTLGKTVILISH 196

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECT----SAVSVDVEGSMYEYCREVGITLFTVSH 289
           LSGG++QRVA+AR   + P   + D+ T    S     +   + +   E G T+  V+H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA 264
           LSGG+KQRVA+AR     P+  + D+ TSA
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSA 193

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREV-- 280
            + + D +   S G  +++ +AR     P+ AILDE TS   +DV     + +  ++   
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSG--LDVLNAREVRKILKQASQ 194

Query: 281 -GITLFTVSH 289
            G+T+   SH
Sbjct: 195 EGLTILVSSH 204

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 207 TEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVS 266
            E L+ ++L    NR             LSGG++QRVA+AR    RPQ  + DE  +A+ 
Sbjct: 127 RELLRFMRLESYANRF---------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177

Query: 267 VDVEGSM-YEYCR---EVGITLFTVSH 289
             +   +     +   E+G+T   V+H
Sbjct: 178 TQIRRELRTFVRQVHDEMGVTSVFVTH 204

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSA-----VSVDVEGSMYEYCREVGITLFTVSH 289
           LSGG+ QRVA+AR     P+  + DE TSA     V  +V   M +   E G+T+  V+H
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVLSVMKQLANE-GMTMVVVTH 217

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 223 KGWDTV-ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD 268
           +G++TV  D  + LS G++Q +A+ R F   P+  ILDE TS  +VD
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS--NVD 523

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA 264
           +YL KV +      E+       +   LSGG++QRV++AR     P   + DE TSA
Sbjct: 135 KYLAKVGID-----ERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSM-YEYC---REVGITLFTVSH 289
           LSGG++QR A+AR     P+  +LDE  SA+   +   +  +     R  G +   VSH
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           +  + +++ ++L+R             LSGGE+QRVA+AR     P+  +LDE  SA+  
Sbjct: 110 DTARDLKIEHLLDRN---------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160

Query: 268 DVEGSM-YEYC---REVGITLFTVSH 289
             + +         ++  +T+  ++H
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITH 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.96
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.96
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.94
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.93
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.87
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.86
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.86
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.85
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.85
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.84
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.83
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.75
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.75
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.73
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.68
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.65
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.64
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.63
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.63
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.63
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.6
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.59
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.59
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.59
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.59
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.59
2og2_A	359	Putative signal recognition particle receptor; nuc	99.58
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.57
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.52
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.51
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.51
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.48
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.47
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.45
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.44
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.38
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.37
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.36
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.36
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.33
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.33
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.27
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.27
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.24
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.24
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.23
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.22
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.21
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.19
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.18
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.14
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.14
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.13
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.05
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.02
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.01
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.0
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.84
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.83
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.8
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.78
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.64
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.62
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.57
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.5
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.46
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.44
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.42
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.35
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.34
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.34
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.33
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.16
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.15
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.12
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.1
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.06
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.03
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.99
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.92
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.84
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.83
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.43
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.4
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.36
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.34
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.31
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.15
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.14
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.12
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.02
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.75
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.63
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.31
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.28
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.18
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.66
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.18
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.05
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.97
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.83
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.72
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.7
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.18
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.14
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	94.13
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.36
3ice_A	422	Transcription termination factor RHO; transcriptio	93.26
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.1
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	92.74
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	92.26
2z43_A	324	DNA repair and recombination protein RADA; archaea	92.0
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	91.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	91.69
3kta_A	182	Chromosome segregation protein SMC; structural mai	90.96
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	89.83
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	89.1
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	88.1
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	87.1
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	86.92
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	84.98
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	84.31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	81.18
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	80.84
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	80.04

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.6e-45  Score=396.30  Aligned_cols=236  Identities=20%  Similarity=0.261  Sum_probs=199.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCC-CC
Q psy11400         18 AEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGG-LG   96 (298)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~-~~   96 (298)
                      ..+++++...+.+++....+.+|+.++++..++.+...              ......+..+.|+|+||+|+||++. .+
T Consensus      1028 ~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--------------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~ 1093 (1321)
T 4f4c_A         1028 TSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS--------------LAGEKKKLYGKVIFKNVRFAYPERPEIE 1093 (1321)
T ss_dssp             TSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC--------------CCSBCCCCCCCEEEEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc--------------CCCCCCCCCCeEEEEEEEEeCCCCCCCc
Confidence            44566677778888999999999999887544332110              0011122346799999999998643 23


Q ss_pred             CCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc--------
Q psy11400         97 FDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------  164 (298)
Q Consensus        97 ~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------  164 (298)
                             +|+|+||+|++||++|||        |+|  ||  |+++       |    .|+|+|++|+|..+        
T Consensus      1094 -------VL~~isl~I~~Ge~vaIV--------G~SGsGKSTL~~l-------L----~rl~~p~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A         1094 -------ILKGLSFSVEPGQTLALV--------GPSGCGKSTVVAL-------L----ERFYDTLGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp             -------SEEEEEEEECTTCEEEEE--------CSTTSSTTSHHHH-------H----TTSSCCSSSEEEETTEETTTBC
T ss_pred             -------cccceeEEECCCCEEEEE--------CCCCChHHHHHHH-------H----hcCccCCCCEEEECCEEhhhCC
Confidence                   999999999999999999        999  99  9999       8    99999999998632        


Q ss_pred             ---CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhH
Q psy11400        165 ---PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGE  239 (298)
Q Consensus       165 ---~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGq  239 (298)
                         .|++|+||||+|++|++|++|||.|+..+     ...+++++.++++.+++++++.. |+||||.++ .+.+|||||
T Consensus      1148 ~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A         1148 PEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp             HHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred             HHHHHhheEEECCCCEeeCccHHHHHhccCCC-----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence               37889999999999999999999997532     24678999999999999988765 899999876 788999999


Q ss_pred             HHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        240 KQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       240 kQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |||+||||||+++|+|||||||||+||+++++.|.+.+++  .++|+|+||||+++++.+|
T Consensus      1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD 1283 (1321)
T 4f4c_A         1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNAD 1283 (1321)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCS
T ss_pred             HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCC
Confidence            9999999999999999999999999999999999999987  4899999999999998765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=3.9e-45  Score=337.94  Aligned_cols=221  Identities=21%  Similarity=0.259  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCCCCCCCcccceeee
Q psy11400         29 REMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGFDSRWGRSFFDY  108 (298)
Q Consensus        29 ~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~i  108 (298)
                      ..+++..++.+|+.++++...+.....              .........+.|+++||+|+|+.+..        +|+|+
T Consensus        16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~--------------~~~~~~~~~~~i~~~~vs~~y~~~~~--------vL~~i   73 (306)
T 3nh6_A           16 PRGSHMFIDMENMFDLLKEETEVKDLP--------------GAGPLRFQKGRIEFENVHFSYADGRE--------TLQDV   73 (306)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHSCCCCT--------------TCBCCCCSSCCEEEEEEEEESSTTCE--------EEEEE
T ss_pred             hhHHHHHHHHHHHHHHHhCCccccccc--------------cccccCCCCCeEEEEEEEEEcCCCCc--------eeeee
Confidence            456677888999999988765432110              00011112356999999999975444        99999


Q ss_pred             eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCcEEEEc
Q psy11400        109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGKLFYVP  173 (298)
Q Consensus       109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~i~~v~  173 (298)
                      ||+|++|++++|+        |||  ||  |+++       +    .|+++|++|+|...           .|++|+|||
T Consensus        74 sl~i~~Ge~vaiv--------G~sGsGKSTLl~l-------l----~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~  134 (306)
T 3nh6_A           74 SFTVMPGQTLALV--------GPSGAGKSTILRL-------L----FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP  134 (306)
T ss_dssp             EEEECTTCEEEEE--------SSSCHHHHHHHHH-------H----TTSSCCSEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred             eEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----HcCCCCCCcEEEECCEEcccCCHHHHhcceEEEe
Confidence            9999999999999        999  99  9999       8    99999999998632           245799999


Q ss_pred             CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCCCCChhHHHHHHHHHHHhc
Q psy11400        174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WIDVLSGGEKQRVAMARLFYH  251 (298)
Q Consensus       174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~  251 (298)
                      |+|++|++||+|||.++..       ...++++.++++.+++.++++. |.|+++..+ .+.+|||||||||+|||||++
T Consensus       135 Q~~~lf~~Tv~eNi~~~~~-------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~  207 (306)
T 3nh6_A          135 QDTVLFNDTIADNIRYGRV-------TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK  207 (306)
T ss_dssp             SSCCCCSEEHHHHHHTTST-------TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             cCCccCcccHHHHHHhhcc-------cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998752       3456788999999999887765 779999876 778999999999999999999


Q ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        252 RPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      +|++||||||||+||+.++..+.+.+++  .++|+|+||||++++...
T Consensus       208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~a  255 (306)
T 3nh6_A          208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA  255 (306)
T ss_dssp             CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTC
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcC
Confidence            9999999999999999999999998876  389999999999988653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1e-44  Score=389.97  Aligned_cols=249  Identities=18%  Similarity=0.212  Sum_probs=210.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+.++...+..+..|+..+...+..+++..++..|+.++++..++.+...             .........++.|+|
T Consensus       352 ~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------~~~~~~~~~~g~I~~  418 (1321)
T 4f4c_A          352 FGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS-------------KAGRKDMKIKGDITV  418 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS-------------SCCCCCCCCCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc-------------cccccCCCCCCcEEE
Confidence            3566777777888899999999999999999999999999987543322110             000011123457999


Q ss_pred             eeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         84 LGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        84 ~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      +||+|+||+.. .+       +|+|+||+|++|+.++|+        |||  ||  |+++       +    .|+|+|++
T Consensus       419 ~nvsF~Y~~~~~~~-------vL~~isl~i~~G~~vaiv--------G~sGsGKSTll~l-------l----~~~~~~~~  472 (1321)
T 4f4c_A          419 ENVHFTYPSRPDVP-------ILRGMNLRVNAGQTVALV--------GSSGCGKSTIISL-------L----LRYYDVLK  472 (1321)
T ss_dssp             EEEEECCSSSTTSC-------SEEEEEEEECTTCEEEEE--------ECSSSCHHHHHHH-------H----TTSSCCSE
T ss_pred             EEeeeeCCCCCCCc-------eeeceEEeecCCcEEEEE--------ecCCCcHHHHHHH-------h----cccccccc
Confidence            99999998532 33       999999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400        159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD  226 (298)
Q Consensus       159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d  226 (298)
                      |+|..+           .|++|+||+|+|++|++||+|||.|+.       +..+++++.++++.++++++++. |+|++
T Consensus       473 G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~-------~~~~~~~v~~a~~~a~l~~~i~~lp~G~~  545 (1321)
T 4f4c_A          473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK-------EGITREEMVAACKMANAEKFIKTLPNGYN  545 (1321)
T ss_dssp             EEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTC-------TTCCHHHHHHHHHHTTCHHHHHHSTTTTS
T ss_pred             CcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhc-------ccchHHHHHHHHHHccchhHHHcCCCCCc
Confidence            998643           256899999999999999999999985       34678899999999999987765 89999


Q ss_pred             cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |.++ .+.+|||||||||+||||++++|+++|||||||+||++++..+.+.+++  .|+|+|+||||++++++.|
T Consensus       546 T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD  620 (1321)
T 4f4c_A          546 TLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNAD  620 (1321)
T ss_dssp             SEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCS
T ss_pred             cEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCC
Confidence            9877 8899999999999999999999999999999999999999999988876  4999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=6.1e-44  Score=356.61  Aligned_cols=247  Identities=19%  Similarity=0.222  Sum_probs=204.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+.++...+..+..|+..+...+..+++..++.+|+.++++..++....              ..........+.+++
T Consensus       279 ~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--------------~~~~~~~~~~~~i~~  344 (587)
T 3qf4_A          279 IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA--------------DNALALPNVEGSVSF  344 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC--------------TTCBCCSCCCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--------------CCccccCCCCCcEEE
Confidence            355666677777888899999999999999999999999988743221110              000001122457999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+.+..+       +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|
T Consensus       345 ~~v~~~y~~~~~~-------~l~~isl~i~~Ge~~~iv--------G~sGsGKSTll~~-------l----~g~~~~~~G  398 (587)
T 3qf4_A          345 ENVEFRYFENTDP-------VLSGVNFSVKPGSLVAVL--------GETGSGKSTLMNL-------I----PRLIDPERG  398 (587)
T ss_dssp             EEEEECSSSSSCC-------SEEEEEEEECTTCEEEEE--------CSSSSSHHHHHHT-------T----TTSSCCSEE
T ss_pred             EEEEEEcCCCCCc-------ceeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCccCCCc
Confidence            9999999754433       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .|++|+||||+|++|++|++||+.++.       ...+++++.++++.+++.++++. |+|+++
T Consensus       399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~  471 (587)
T 3qf4_A          399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-------EDATDDEIVEAAKIAQIHDFIISLPEGYDS  471 (587)
T ss_dssp             EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-------SSCCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred             EEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC-------CCCCHHHHHHHHHHhCcHHHHHhcccchhh
Confidence            98642           256799999999999999999999874       23467788899999999887765 789999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      ..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++  .|+|+|+||||+++++..
T Consensus       472 ~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~  544 (587)
T 3qf4_A          472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLA  544 (587)
T ss_dssp             EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTS
T ss_pred             HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhC
Confidence            866 7889999999999999999999999999999999999999999998875  489999999999988654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=4.7e-44  Score=356.85  Aligned_cols=247  Identities=21%  Similarity=0.256  Sum_probs=204.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+.++...+..+..|+..+...+..+++..++.+|+.++++..++....              ..........+.+++
T Consensus       277 ~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--------------~~~~~~~~~~~~i~~  342 (578)
T 4a82_A          277 VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG--------------VGAQPIEIKQGRIDI  342 (578)
T ss_dssp             HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC--------------TTCCCCCCCSCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--------------CCccccCCCCCeEEE
Confidence            345666666777888899999999999999999999999987643221110              000011122457999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..+       +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|
T Consensus       343 ~~v~~~y~~~~~~-------~l~~isl~i~~G~~~~iv--------G~sGsGKSTll~~-------l----~g~~~p~~G  396 (578)
T 4a82_A          343 DHVSFQYNDNEAP-------ILKDINLSIEKGETVAFV--------GMSGGGKSTLINL-------I----PRFYDVTSG  396 (578)
T ss_dssp             EEEEECSCSSSCC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHTT-------T----TTSSCCSEE
T ss_pred             EEEEEEcCCCCCc-------ceeeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCCCCCc
Confidence            9999999764433       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .|++|+||||+|++|++|++||+.++.       ...+++++.++++.+++.++++. |+|+++
T Consensus       397 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t  469 (578)
T 4a82_A          397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-------PTATDEEVVEAAKMANAHDFIMNLPQGYDT  469 (578)
T ss_dssp             EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-------SSCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred             EEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhCcchhhh
Confidence            98642           245799999999999999999999864       23457789999999999887765 789999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      ..+ .+.+||||||||++|||||+++|+++|||||||+||+.++..+.+.+++  .++|+|+||||++.++..
T Consensus       470 ~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~  542 (578)
T 4a82_A          470 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA  542 (578)
T ss_dssp             BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTC
T ss_pred             hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence            876 7889999999999999999999999999999999999999999988865  489999999999988754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=2.4e-43  Score=352.01  Aligned_cols=246  Identities=18%  Similarity=0.202  Sum_probs=205.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++.+..              .  .......+.+++
T Consensus       281 ~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--------------~--~~~~~~~~~i~~  344 (582)
T 3b5x_A          281 PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--------------K--YEAERVNGEVDV  344 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--------------C--CCCCCCCCeEEE
Confidence            456777777888899999999999999999999999999988643221100              0  000112356999


Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +||+|+|+++..+       +|+|+||++++||+++|+        |||  ||  |+++       +    .|+++|++|
T Consensus       345 ~~v~~~y~~~~~~-------~l~~i~l~i~~G~~~~iv--------G~sGsGKSTll~~-------l----~g~~~p~~G  398 (582)
T 3b5x_A          345 KDVTFTYQGKEKP-------ALSHVSFSIPQGKTVALV--------GRSGSGKSTIANL-------F----TRFYDVDSG  398 (582)
T ss_pred             EEEEEEcCCCCcc-------ccccceEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCCCCCC
Confidence            9999999753222       999999999999999999        999  99  9999       8    999999999


Q ss_pred             eeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccc
Q psy11400        160 TVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDT  227 (298)
Q Consensus       160 ~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~  227 (298)
                      +|...           .+++|+||||+|.+|++|++||+.++..      ...+++++.++++.+++++++++ |+|+++
T Consensus       399 ~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t  472 (582)
T 3b5x_A          399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE------GEYTREQIEQAARQAHAMEFIENMPQGLDT  472 (582)
T ss_pred             EEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC------CCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence            98532           2568999999999999999999998641      13456789999999999988876 789999


Q ss_pred             ccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        228 VAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       228 ~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      ..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++  .|+|+|+||||++.++..
T Consensus       473 ~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~  545 (582)
T 3b5x_A          473 VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA  545 (582)
T ss_pred             hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence            876 7789999999999999999999999999999999999999999998876  389999999999987654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2.6e-43  Score=351.75  Aligned_cols=245  Identities=17%  Similarity=0.205  Sum_probs=205.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEE
Q psy11400          4 VLQYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGR   83 (298)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   83 (298)
                      ++.+..+...+..+..|+..+...+..+++...+.+|+.++++..++...                .........+.+++
T Consensus       281 ~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~----------------~~~~~~~~~~~i~~  344 (582)
T 3b60_A          281 AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE----------------GKRVIDRATGDLEF  344 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC----------------CCBCCSCCCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC----------------CCCCCCCCCCcEEE
Confidence            45677778888899999999999999999999999999998864221110                00000112357999


Q ss_pred             eeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         84 LGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        84 ~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      +||+|+|+++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++
T Consensus       345 ~~v~~~y~~~~~~--------~l~~v~~~i~~G~~~~iv--------G~sGsGKSTLl~~-------l----~g~~~p~~  397 (582)
T 3b60_A          345 RNVTFTYPGREVP--------ALRNINLKIPAGKTVALV--------GRSGSGKSTIASL-------I----TRFYDIDE  397 (582)
T ss_dssp             EEEEECSSSSSCC--------SEEEEEEEECTTCEEEEE--------ECTTSSHHHHHHH-------H----TTTTCCSE
T ss_pred             EEEEEEcCCCCCc--------cccceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hhccCCCC
Confidence            9999999743 33        999999999999999999        999  99  9999       8    99999999


Q ss_pred             ceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcc
Q psy11400        159 GTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWD  226 (298)
Q Consensus       159 G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d  226 (298)
                      |+|...           .+++|+||||+|.+|++|++||+.++..      ...+++++.++++.+++.+++++ |+|++
T Consensus       398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~p~g~~  471 (582)
T 3b60_A          398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART------EEYSREQIEEAARMAYAMDFINKMDNGLD  471 (582)
T ss_dssp             EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT------SCCCHHHHHHHHHTTTCHHHHHHSTTGGG
T ss_pred             CeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC------CCCCHHHHHHHHHHcCCHHHHHhcccccc
Confidence            998632           1457999999999999999999998641      13457789999999999988876 78999


Q ss_pred             cccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        227 TVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       227 ~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      +..+ .+.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++  .|+|+|+||||++.++..
T Consensus       472 ~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~  545 (582)
T 3b60_A          472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA  545 (582)
T ss_dssp             SBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTC
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence            9876 7889999999999999999999999999999999999999999988765  389999999999987654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.6e-44  Score=358.24  Aligned_cols=244  Identities=18%  Similarity=0.218  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEee
Q psy11400          6 QYYTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLG   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   85 (298)
                      .+.++...+..+..|+..+...+..+++...+.+|+.++++..++.+.               ..........+.++++|
T Consensus       295 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---------------~~~~~~~~~~~~i~~~~  359 (598)
T 3qf4_B          295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD---------------PDAVELREVRGEIEFKN  359 (598)
T ss_dssp             HHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC---------------SSCCCCCSCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---------------CCCCCCCCCCCeEEEEE
Confidence            444444455566789999999999999999999999998864322110               00001112235699999


Q ss_pred             eeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCcee
Q psy11400         86 ITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTV  161 (298)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i  161 (298)
                      |+|+|+.+.+        +|+|+||++++||+++|+        |||  ||  |+++       +    .|+++|++|+|
T Consensus       360 v~~~y~~~~~--------~l~~isl~i~~G~~~~iv--------G~sGsGKSTll~~-------l----~g~~~p~~G~i  412 (598)
T 3qf4_B          360 VWFSYDKKKP--------VLKDITFHIKPGQKVALV--------GPTGSGKTTIVNL-------L----MRFYDVDRGQI  412 (598)
T ss_dssp             EECCSSSSSC--------SCCSEEEECCTTCEEEEE--------CCTTSSTTHHHHH-------H----TTSSCCSEEEE
T ss_pred             EEEECCCCCc--------cccceEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCcCCCCeEE
Confidence            9999975444        999999999999999999        999  99  9999       8    99999999998


Q ss_pred             ecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc
Q psy11400        162 TKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA  229 (298)
Q Consensus       162 ~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~  229 (298)
                      ...           .|++|+||||+|++|++|++||+.++..       ..+++++.++++.+++++++++ |+|+++..
T Consensus       413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~  485 (598)
T 3qf4_B          413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-------GATDEEIKEAAKLTHSDHFIKHLPEGYETVL  485 (598)
T ss_dssp             EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-------TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred             EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence            642           2457999999999999999999998742       3345678899999999887766 78999987


Q ss_pred             c-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        230 D-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       230 ~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      + .+.+||||||||++|||||+++|+++|||||||+||+.++..+.+.+++  .|+|+|+||||+++++..|
T Consensus       486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d  557 (598)
T 3qf4_B          486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNAD  557 (598)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCC
Confidence            6 7789999999999999999999999999999999999999999988775  4899999999999887543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.7e-41  Score=359.60  Aligned_cols=244  Identities=19%  Similarity=0.197  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeee
Q psy11400          8 YTMGRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGIT   87 (298)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~   87 (298)
                      .++...+.....++..+...+..++...++..|+.++++..++.+...             ..........+.|+++||+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-------------~~~~~~~~~~g~i~~~~v~  394 (1284)
T 3g5u_A          328 LTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFS-------------KSGHKPDNIQGNLEFKNIH  394 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCC-------------SSCCCCTTCCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccc-------------ccCCCCCCCCCeEEEEEEE
Confidence            334444455667888888888889999999999988876432221100             0000011124579999999


Q ss_pred             EecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400         88 LGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT  162 (298)
Q Consensus        88 ~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~  162 (298)
                      |+|+++. .+       +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|+|.
T Consensus       395 ~~y~~~~~~~-------vL~~isl~i~~G~~~~iv--------G~sGsGKSTl~~l-------l----~g~~~~~~G~i~  448 (1284)
T 3g5u_A          395 FSYPSRKEVQ-------ILKGLNLKVKSGQTVALV--------GNSGCGKSTTVQL-------M----QRLYDPLDGMVS  448 (1284)
T ss_dssp             ECCSSTTSCC-------SEEEEEEEECTTCEEEEE--------CCSSSSHHHHHHH-------T----TTSSCCSEEEEE
T ss_pred             EEcCCCCCCc-------ceecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCeEEE
Confidence            9997532 22       999999999999999999        999  99  9999       8    999999999986


Q ss_pred             cc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc
Q psy11400        163 KP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD  230 (298)
Q Consensus       163 ~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~  230 (298)
                      ..           .|++|+||||+|++|++|++|||.++.       ...+++++.++++.+++.+++.+ |.|+++..+
T Consensus       449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~  521 (1284)
T 3g5u_A          449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-------EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG  521 (1284)
T ss_dssp             ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC-------SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred             ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC-------CCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence            43           245799999999999999999999864       23567889999999999887765 789999876


Q ss_pred             -cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        231 -WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       231 -~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                       .+.+|||||||||+|||||+++|++||||||||+||+++++.+.+.+++  .|+|+|+||||+++++..
T Consensus       522 ~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~  591 (1284)
T 3g5u_A          522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA  591 (1284)
T ss_dssp             SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTC
T ss_pred             CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence             7889999999999999999999999999999999999999999888764  489999999999988754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.8e-40  Score=298.11  Aligned_cols=183  Identities=19%  Similarity=0.236  Sum_probs=158.2

Q ss_pred             cEEEeeeeEecCC-CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         80 LRGRLGITLGLRS-GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~-~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .|+++||++.|+. +..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|++
T Consensus         7 ~~~~~~l~~~y~~~~~~--------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~   59 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPV--------ILDNINLSIKQGEVIGIV--------GRSGSGKSTLTKL-------I----QRFY   59 (247)
T ss_dssp             EEEEEEEEEESSTTSCE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSS
T ss_pred             ceeEEEEEEEeCCCCcc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            5899999999953 333        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-c
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-E  222 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~  222 (298)
                      +|++|+|...           .+++|+||||+|.+|..|++||+.++..       ....+++.++++.+++.+++++ +
T Consensus        60 ~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~  132 (247)
T 2ff7_A           60 IPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-------GMSVEKVIYAAKLAGAHDFISELR  132 (247)
T ss_dssp             CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT-------TCCHHHHHHHHHHHTCHHHHHTST
T ss_pred             CCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC-------CCCHHHHHHHHHHhChHHHHHhCc
Confidence            9999998532           1346999999999888899999998631       2345678889999999988876 4


Q ss_pred             CCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        223 KGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       223 ~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      .|+++..+ .+.+|||||||||+|||||+++|+++|||||||+||+.++..+.+.+++  .|+|+|+|||+++.+..
T Consensus       133 ~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~  209 (247)
T 2ff7_A          133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN  209 (247)
T ss_dssp             TGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT
T ss_pred             chhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh
Confidence            57877755 6789999999999999999999999999999999999999999988765  38999999999987754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.8e-40  Score=297.32  Aligned_cols=184  Identities=23%  Similarity=0.343  Sum_probs=156.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+.+..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         1 ml~~~~l~~~y~~~~~--------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   53 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQ--------ILRDISFEAQPNSIIAFA--------GPSGGGKSTIFSL-------L----ERFYQ   53 (243)
T ss_dssp             CEEEEEEEECSSSSSC--------SEEEEEEEECTTEEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             CEEEEEEEEEeCCCCc--------eEEEeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            3789999999953334        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                      |++|+|...           .+++|+||||++.+|..|++||+.++..      ....++++.++++.+++.+++++ +.
T Consensus        54 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~  127 (243)
T 1mv5_A           54 PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE------GDYTDEDLWQVLDLAFARSFVENMPD  127 (243)
T ss_dssp             CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT------SCSCHHHHHHHHHHHTCTTTTTSSTT
T ss_pred             CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc------CCCCHHHHHHHHHHhChHHHHHhCcc
Confidence            999998531           2467999999999888899999998631      12345678889999999887766 45


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      |+++..+ .+.+|||||||||+|||||+++|+++||||||++||+.++..+.+.+++  .++|+|+|||+++.+..
T Consensus       128 gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~  203 (243)
T 1mv5_A          128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD  203 (243)
T ss_dssp             GGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred             chhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence            7777654 6789999999999999999999999999999999999988888877654  38999999999987654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=9.5e-40  Score=350.68  Aligned_cols=243  Identities=19%  Similarity=0.235  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEec
Q psy11400         11 GRMLVKLAEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGL   90 (298)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~   90 (298)
                      ...+.....+++.+...+..+++...+..|+.++++..++.+...             ..........+.++++||+|.|
T Consensus       974 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-------------~~~~~~~~~~g~i~~~~v~~~y 1040 (1284)
T 3g5u_A          974 FSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS-------------TQGLKPNMLEGNVQFSGVVFNY 1040 (1284)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCC-------------SSCCCTTTTSCCEEEEEEEBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc-------------cccccccCCCCcEEEEEEEEEC
Confidence            334444555666666666677788888999998877533221100             0000001124579999999999


Q ss_pred             CCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-
Q psy11400         91 RSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-  164 (298)
Q Consensus        91 ~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-  164 (298)
                      ++.. .+       +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++|++|+|... 
T Consensus      1041 ~~~~~~~-------~l~~vsl~i~~Ge~v~iv--------G~sGsGKSTl~~~-------l----~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A         1041 PTRPSIP-------VLQGLSLEVKKGQTLALV--------GSSGCGKSTVVQL-------L----ERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp             SCGGGCC-------SBSSCCEEECSSSEEEEE--------CSSSTTHHHHHHH-------H----TTSSCCSEEEEESSS
T ss_pred             CCCCCCe-------eecceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCcCCCCCEEEECC
Confidence            7532 22       999999999999999999        999  99  9999       8    99999999998642 


Q ss_pred             ----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400        165 ----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI  232 (298)
Q Consensus       165 ----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~  232 (298)
                                .|++|+||||+|.+|.+|++||+.++...     ...+++++.++++.+++.+++++ ++|+|+..+ .+
T Consensus      1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~-----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A         1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS-----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp             SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS-----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred             EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC-----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence                      26789999999999999999999987531     23567889999999999988866 789999876 78


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      .+|||||||||+|||||+++|++||||||||+||+.+++.+.+.+++  .|+|+|+||||++++...
T Consensus      1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~ 1236 (1284)
T 3g5u_A         1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA 1236 (1284)
T ss_dssp             CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSC
T ss_pred             CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcC
Confidence            89999999999999999999999999999999999999999998875  489999999999988754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=4.2e-40  Score=293.71  Aligned_cols=182  Identities=20%  Similarity=0.203  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCC--CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSGG--LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~--~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +++++||+++|+.+.  .+       +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+
T Consensus         1 ~l~~~~l~~~y~~~~~~~~-------~L~~isl~i~~Ge~~~ii--------G~nGsGKSTLl~~-------l----~Gl   54 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIY-------ALKNVNLNIKEGEFVSIM--------GPSGSGKSTMLNI-------I----GCL   54 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEE-------EEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTS
T ss_pred             CEEEEEEEEEeCCCCccee-------eEEeeeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcC
Confidence            378999999996432  22       899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hhhcCCCHHHHHHHHHHcCC
Q psy11400        154 WPLFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       154 ~~~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~i~~~l~~~~l  215 (298)
                      .+|++|+|....               +++|+||||+|.+++ .|++||+.++.....  ........+++.++++.+++
T Consensus        55 ~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  134 (235)
T 3tif_A           55 DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL  134 (235)
T ss_dssp             SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC
Confidence            999999986321               235999999998876 499999987521100  00000113457788899998


Q ss_pred             chhh-hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        216 GYIL-NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       216 ~~~~-~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      .+.. ++         .+.+|||||||||+|||||+++|++||||||||+||+.....+.+++++    .|+|+|+|||+
T Consensus       135 ~~~~~~~---------~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd  205 (235)
T 3tif_A          135 EERFANH---------KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (235)
T ss_dssp             CGGGTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred             ChhhhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            7543 44         3689999999999999999999999999999999999999998887754    38999999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      ++.+++
T Consensus       206 ~~~~~~  211 (235)
T 3tif_A          206 INVARF  211 (235)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            986654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=3.8e-39  Score=293.31  Aligned_cols=186  Identities=22%  Similarity=0.276  Sum_probs=152.0

Q ss_pred             CcEEEeeeeEecCCC-CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         79 NLRGRLGITLGLRSG-GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~-~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+++++||++.|+++ ..+       +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+
T Consensus        15 ~~l~~~~l~~~y~~~~~~~-------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLlk~-------l----~Gl   68 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQ-------VLQGLTFTLYPGKVTALV--------GPNGSGKSTVAAL-------L----QNL   68 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSC-------CEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTS
T ss_pred             ceEEEEEEEEEeCCCCCce-------eeEeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC
Confidence            479999999999642 122       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400        154 WPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-  221 (298)
Q Consensus       154 ~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-  221 (298)
                      ++|++|+|...           .+++|+||||++.+|..|++||+.++...      ....+++.++++..++.++++. 
T Consensus        69 ~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~l~~l  142 (271)
T 2ixe_A           69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR------TPTMEEITAVAMESGAHDFISGF  142 (271)
T ss_dssp             SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSS------CCCHHHHHHHHHHHTCHHHHHHS
T ss_pred             CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhccc------CChHHHHHHHHHHHhHHHHHHhh
Confidence            99999998532           13469999999998888999999986421      1111345555666677666655 


Q ss_pred             cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcchhhh
Q psy11400        222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~~~~  296 (298)
                      +.|+++..+ .+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.+++.    |+|+|+|||+++.+..
T Consensus       143 ~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~  222 (271)
T 2ixe_A          143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER  222 (271)
T ss_dssp             TTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred             hcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence            335655543 67899999999999999999999999999999999999999999988752    7899999999987654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=6.7e-39  Score=289.98  Aligned_cols=185  Identities=22%  Similarity=0.276  Sum_probs=155.7

Q ss_pred             CCcEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      ..+++++||++.|++.. .+       +|+|+||+|++|++++|+        |||  ||  |+++       +    .|
T Consensus        15 ~~~l~i~~l~~~y~~~~~~~-------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~G   68 (260)
T 2ghi_A           15 GVNIEFSDVNFSYPKQTNHR-------TLKSINFFIPSGTTCALV--------GHTGSGKSTIAKL-------L----YR   68 (260)
T ss_dssp             CCCEEEEEEEECCTTCCSSC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TT
T ss_pred             CCeEEEEEEEEEeCCCCcCc-------eeEeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hc
Confidence            35799999999996432 22       999999999999999999        999  99  9999       8    89


Q ss_pred             ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +++| +|+|...           .+++|+||||+|.+|..|++||+.++..       ....+++.++++.+++.++.+.
T Consensus        69 l~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~l~~~~l~~~~~~  140 (260)
T 2ghi_A           69 FYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL-------DATDEEVIKATKSAQLYDFIEA  140 (260)
T ss_dssp             SSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT-------TCCHHHHHHHHHHTTCHHHHHT
T ss_pred             cCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCC-------CCCHHHHHHHHHHhCCHHHHHh
Confidence            9887 7998531           1457999999999888899999998641       1245667888999999877654


Q ss_pred             -cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        222 -EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 -~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                       +.++++..+ .+.+|||||||||+|||||+++|++|||||||++||+.++..+.+.+++  .++|+|+|||+++.+..
T Consensus       141 l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~  219 (260)
T 2ghi_A          141 LPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS  219 (260)
T ss_dssp             STTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT
T ss_pred             ccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence             566776544 6789999999999999999999999999999999999999999988765  37999999999987654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1e-39  Score=297.53  Aligned_cols=180  Identities=17%  Similarity=0.207  Sum_probs=148.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+++..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus         7 ~l~i~~ls~~y~~~~~--------~L~~isl~i~~Ge~~~ii--------GpnGsGKSTLl~~-------l----~Gl~~   59 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTH--------ALKGINMNIKRGEVTAIL--------GGNGVGKSTLFQN-------F----NGILK   59 (275)
T ss_dssp             EEEEEEEEEECTTSCE--------EEEEEEEEEETTSEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             EEEEEEEEEEECCCCe--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HcCCC
Confidence            6899999999975444        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc-------------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP-------------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~-------------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...             .+++||||||+|  .++..|++||+.++...... ......+++.++++.+++.++.+
T Consensus        60 p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~  138 (275)
T 3gfo_A           60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-PEDEIRKRVDNALKRTGIEHLKD  138 (275)
T ss_dssp             CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred             CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhc
Confidence            999998532             135699999998  46778999999875321100 00011346788999999987766


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      ++         +.+|||||||||+|||||+.+|++||||||||+||+.++..+.+++++    .|+|||+|||+++.+..
T Consensus       139 ~~---------~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~  209 (275)
T 3gfo_A          139 KP---------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL  209 (275)
T ss_dssp             SB---------GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG
T ss_pred             CC---------cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH
Confidence            53         679999999999999999999999999999999999999988887653    38999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.1e-38  Score=283.53  Aligned_cols=181  Identities=18%  Similarity=0.245  Sum_probs=150.2

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+.+..+       +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         6 ~l~~~~l~~~y~~~~~~-------il~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   59 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTP-------VLKDINFKIERGQLLAVA--------GSTGAGKTSLLMM-------I----MGELE   59 (229)
T ss_dssp             EEEEEEEEECSSTTSCC-------SEEEEEEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEEEEEEEeCCCCce-------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence            68999999999643322       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cCC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WID  233 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~~  233 (298)
                      |++|+|....  +|+|+||+|.+++.|++||+.++..        .......++++.+++.+.+++ +.+.++..+ .+.
T Consensus        60 p~~G~i~~~g--~i~~v~q~~~~~~~tv~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  129 (229)
T 2pze_A           60 PSEGKIKHSG--RISFCSQFSWIMPGTIKENIIFGVS--------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI  129 (229)
T ss_dssp             CSEEEEEECS--CEEEECSSCCCCSBCHHHHHHTTSC--------CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCT
T ss_pred             CCccEEEECC--EEEEEecCCcccCCCHHHHhhccCC--------cChHHHHHHHHHhCcHHHHHhCcccccccccCCCC
Confidence            9999997653  6999999999888899999998642        122345566777788766654 333444333 578


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~  296 (298)
                      +||||||||++|||||+++|+++||||||++||+.++..+.+.+ ++  .++|+|++||+++.+..
T Consensus       130 ~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~  195 (229)
T 2pze_A          130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK  195 (229)
T ss_dssp             TSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence            99999999999999999999999999999999999999999863 33  37999999999987654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=2.1e-39  Score=305.46  Aligned_cols=185  Identities=23%  Similarity=0.253  Sum_probs=150.8

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      +.+|+++||++.|+.+..     ...+|+|+||+|++||+++|+        |||  ||  |+++       +    +|+
T Consensus        22 ~~mi~v~~ls~~y~~~~~-----~~~aL~~vsl~i~~Gei~~Ii--------GpnGaGKSTLlr~-------i----~GL   77 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGTR-----TIQALNNVSLHVPAGQIYGVI--------GASGAGKSTLIRC-------V----NLL   77 (366)
T ss_dssp             -CCEEEEEEEEEEECSSS-----EEEEEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTS
T ss_pred             CceEEEEeEEEEeCCCCC-----CeEEEEeeEEEEcCCCEEEEE--------cCCCchHHHHHHH-------H----hcC
Confidence            357999999999964321     012899999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh
Q psy11400        154 WPLFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI  218 (298)
Q Consensus       154 ~~~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~  218 (298)
                      .+|++|+|...              .|++||||||++.+++ .|++||+.++...... ......+++.++++.++|.+.
T Consensus        78 ~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~  156 (366)
T 3tui_C           78 ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDK  156 (366)
T ss_dssp             SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGG
T ss_pred             CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchH
Confidence            99999998531              1467999999998765 5999999886421100 001123567889999999876


Q ss_pred             hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchh
Q psy11400        219 LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLW  294 (298)
Q Consensus       219 ~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~  294 (298)
                      .++         ++.+|||||||||+|||||+.+|++|||||||||||+.+...+++++++    .|+|||+|||+++.+
T Consensus       157 ~~~---------~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~  227 (366)
T 3tui_C          157 HDS---------YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV  227 (366)
T ss_dssp             TTC---------CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred             hcC---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence            655         3789999999999999999999999999999999999999999888764    389999999999987


Q ss_pred             hh
Q psy11400        295 TH  296 (298)
Q Consensus       295 ~~  296 (298)
                      ..
T Consensus       228 ~~  229 (366)
T 3tui_C          228 KR  229 (366)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=283.73  Aligned_cols=181  Identities=22%  Similarity=0.221  Sum_probs=148.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|+.+..+       +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         3 ~l~~~~l~~~y~~~~~~-------vl~~vsl~i~~Ge~~~i~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (237)
T 2cbz_A            3 SITVRNATFTWARSDPP-------TLNGITFSIPEGALVAVV--------GQVGCGKSSLLSA-------L----LAEMD   56 (237)
T ss_dssp             CEEEEEEEEESCTTSCC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTCSE
T ss_pred             eEEEEEEEEEeCCCCCc-------eeeeeEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            48999999999642222       999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCccccc-ccCC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVA-DWID  233 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~-~~~~  233 (298)
                      |++|+|....  +|+||||+|.++..|++||+.++...        ..+...++++.+++.+.+.. +.++++.. ..+.
T Consensus        57 p~~G~I~~~g--~i~~v~Q~~~~~~~tv~enl~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  126 (237)
T 2cbz_A           57 KVEGHVAIKG--SVAYVPQQAWIQNDSLRENILFGCQL--------EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGV  126 (237)
T ss_dssp             EEEEEEEECS--CEEEECSSCCCCSEEHHHHHHTTSCC--------CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSB
T ss_pred             CCCceEEECC--EEEEEcCCCcCCCcCHHHHhhCcccc--------CHHHHHHHHHHHhhHHHHHhccccccccccCCCC
Confidence            9999997654  69999999988888999999986421        11234455666666544433 33444433 3678


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH---h--cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR---E--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~--~~~TiIiitH~l~~~~~  296 (298)
                      +|||||||||+|||||+.+|+++||||||++||+.++..+.+.+.   +  .++|+|+|||+++.+..
T Consensus       127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~  194 (237)
T 2cbz_A          127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ  194 (237)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh
Confidence            999999999999999999999999999999999999999999873   2  38999999999987654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=8.2e-39  Score=288.37  Aligned_cols=178  Identities=19%  Similarity=0.192  Sum_probs=148.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+.+..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         4 ~l~i~~l~~~y~~~~~--------vl~~isl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   56 (253)
T 2nq2_C            4 ALSVENLGFYYQAENF--------LFQQLNFDLNKGDILAVL--------GQNGCGKSTLLDL-------L----LGIHR   56 (253)
T ss_dssp             EEEEEEEEEEETTTTE--------EEEEEEEEEETTCEEEEE--------CCSSSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEeeEEEEeCCCCe--------EEEEEEEEECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999952333        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCCC-CCCHHHHHccCCcch-hhh--hcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKE-DMI--QKGITDADLTEYLQKVQLGYILNREKGWDTVADW  231 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~  231 (298)
                      |++|+|.  .+++|+||||++.++ ..|++||+.++.... ...  ......+++.++++.+++.++.+++         
T Consensus        57 p~~G~I~--~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------  125 (253)
T 2nq2_C           57 PIQGKIE--VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE---------  125 (253)
T ss_dssp             CSEEEEE--ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB---------
T ss_pred             CCCcEEE--EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC---------
Confidence            9999998  456799999999876 579999998863211 000  0001135678899999998766553         


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---c-CcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---V-GITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~-~~TiIiitH~l~~~~  295 (298)
                      +.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+++   . |+|+|++||+++.+.
T Consensus       126 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~  193 (253)
T 2nq2_C          126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV  193 (253)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            679999999999999999999999999999999999999999888764   2 899999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=2.5e-38  Score=287.15  Aligned_cols=180  Identities=21%  Similarity=0.202  Sum_probs=150.3

Q ss_pred             cEEEeeeeEecCCCC---CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         80 LRGRLGITLGLRSGG---LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~---~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      +++++||++.|+.+.   .+       +|+|+||+|++|++++|+        |||  ||  |+++       +    +|
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~-------vl~~vsl~i~~Ge~~~li--------G~nGsGKSTLl~~-------i----~G   55 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKK-------ALENVSLVINEGECLLVA--------GNTGSGKSTLLQI-------V----AG   55 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEE-------EEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TT
T ss_pred             EEEEEEEEEEecCCCccccc-------eeeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hC
Confidence            488999999996221   22       899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc--------CCCcEEEEcCcC--CCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc--hhhh
Q psy11400        153 LWPLFGGTVTKP--------PRGKLFYVPQRP--YMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG--YILN  220 (298)
Q Consensus       153 l~~~~~G~i~~~--------~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~--~~~~  220 (298)
                      +++|++|+|...        .+++|+||||+|  .++..|++||+.++....  .......+++.++++.+++.  ++.+
T Consensus        56 l~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~  133 (266)
T 2yz2_A           56 LIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKD  133 (266)
T ss_dssp             SSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTT
T ss_pred             CCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCccccc
Confidence            999999998642        245799999996  456789999998864211  11122356788999999998  7766


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ++         +.+|||||||||+|||||+++|++|||||||++||+.++..+.+.+++   .|+|||+|||+++.+..
T Consensus       134 ~~---------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~  203 (266)
T 2yz2_A          134 RV---------PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN  203 (266)
T ss_dssp             CC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            53         679999999999999999999999999999999999999999888764   38999999999987753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=3.8e-39  Score=285.50  Aligned_cols=179  Identities=26%  Similarity=0.231  Sum_probs=146.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|++ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         4 ~l~~~~l~~~y~~-~~--------~l~~vsl~i~~Ge~~~ii--------G~nGsGKSTLl~~-------l----~Gl~~   55 (224)
T 2pcj_A            4 ILRAENIKKVIRG-YE--------ILKGISLSVKKGEFVSII--------GASGSGKSTLLYI-------L----GLLDA   55 (224)
T ss_dssp             EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------ECTTSCHHHHHHH-------H----TTSSC
T ss_pred             EEEEEeEEEEECC-Ee--------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            5899999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC---------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTKPP---------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~~~---------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|....               +++|+||||++.++. .|++||+.++...... ......+++.++++.+++.++.
T Consensus        56 p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~  134 (224)
T 2pcj_A           56 PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-PKKEAKERGEYLLSELGLGDKL  134 (224)
T ss_dssp             CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCT
T ss_pred             CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCchhh
Confidence            9999985311               146999999998765 6999999875311100 0001134678899999997665


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      +++         +.+|||||||||+|||||+.+|+++||||||++||+.++..+.+++++   .|+|+|+|||+++.+..
T Consensus       135 ~~~---------~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~  205 (224)
T 2pcj_A          135 SRK---------PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAEL  205 (224)
T ss_dssp             TCC---------GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTT
T ss_pred             hCC---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence            553         679999999999999999999999999999999999999998887754   38999999999987643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.7e-38  Score=298.77  Aligned_cols=178  Identities=20%  Similarity=0.179  Sum_probs=148.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||++.|. +..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         4 ~l~i~~ls~~y~-~~~--------~L~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl~~   55 (359)
T 3fvq_A            4 ALHIGHLSKSFQ-NTP--------VLNDISLSLDPGEILFII--------GASGCGKTTLLRC-------L----AGFEQ   55 (359)
T ss_dssp             CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----HTSSC
T ss_pred             EEEEEeEEEEEC-CEE--------EEEeeEEEEcCCCEEEEE--------CCCCchHHHHHHH-------H----hcCCC
Confidence            589999999995 233        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec-------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        156 LFGGTVTK-------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~-------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      |++|+|..             +.+++||||||++.+|+ .|++||+.|+...... ......+++.++++.++|.++.++
T Consensus        56 p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r  134 (359)
T 3fvq_A           56 PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGR  134 (359)
T ss_dssp             CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTS
T ss_pred             CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCchHhcC
Confidence            99999852             12467999999998875 6999999997532110 011123568899999999887766


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH----HhcCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC----REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l----~~~~~TiIiitH~l~~~~  295 (298)
                      +         +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+    ++.|+|+|+|||+++.+.
T Consensus       135 ~---------~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~  203 (359)
T 3fvq_A          135 Y---------PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL  203 (359)
T ss_dssp             C---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred             C---------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            4         6899999999999999999999999999999999999888877543    345999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-38  Score=279.64  Aligned_cols=176  Identities=14%  Similarity=0.218  Sum_probs=148.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.|++  .        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|++
T Consensus         9 ~~l~~~~ls~~y~~--~--------il~~vsl~i~~Ge~~~ii--------G~NGsGKSTLlk~-------l----~Gl~   59 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK--P--------VLERITMTIEKGNVVNFH--------GPNGIGKTTLLKT-------I----STYL   59 (214)
T ss_dssp             CEEEEEEEEEESSS--E--------EEEEEEEEEETTCCEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred             ceEEEEEEEEEeCC--e--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            46999999999953  4        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccc
Q psy11400        155 PLFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDT  227 (298)
Q Consensus       155 ~~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~  227 (298)
                      +|++|+|...      .++.|+||||++.++. .|++||+.++......   ....+++.++++.+++.+. +++     
T Consensus        60 ~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~gl~~~-~~~-----  130 (214)
T 1sgw_A           60 KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV---KVNKNEIMDALESVEVLDL-KKK-----  130 (214)
T ss_dssp             CCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTCCCT-TSB-----
T ss_pred             CCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC---chHHHHHHHHHHHcCCCcC-CCC-----
Confidence            9999998642      3467999999998776 4999999875311100   1235678899999999765 443     


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        228 VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       228 ~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                          +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+++   .|+|||++||+++.+..
T Consensus       131 ----~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~  198 (214)
T 1sgw_A          131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD  198 (214)
T ss_dssp             ----GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred             ----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence                679999999999999999999999999999999999999888887654   37999999999987654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.2e-38  Score=287.84  Aligned_cols=179  Identities=18%  Similarity=0.187  Sum_probs=147.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         7 ~l~i~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~li--------G~nGsGKSTLlk~-------l----~Gl~~   58 (257)
T 1g6h_A            7 ILRTENIVKYFGE-FK--------ALDGVSISVNKGDVTLII--------GPNGSGKSTLINV-------I----TGFLK   58 (257)
T ss_dssp             EEEEEEEEEEETT-EE--------EEEEECCEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSC
T ss_pred             EEEEeeeEEEECC-Ee--------eEeeeEEEEeCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcc--hhh----------hhcCCCHHHHHHHH
Q psy11400        156 LFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTK--EDM----------IQKGITDADLTEYL  210 (298)
Q Consensus       156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~----------~~~~~~~~~i~~~l  210 (298)
                      |++|+|....            +++|+||||++.++. .|++||+.++...  ...          .......+++.+++
T Consensus        59 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (257)
T 1g6h_A           59 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL  138 (257)
T ss_dssp             CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred             CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHH
Confidence            9999985321            236999999997764 6999999886321  000          00001134678899


Q ss_pred             HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEE
Q psy11400        211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTV  287 (298)
Q Consensus       211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIii  287 (298)
                      +.+++.+..+++         +.+|||||||||+|||||+++|++|||||||++||+.+...+.+++++   .|+|||+|
T Consensus       139 ~~~~l~~~~~~~---------~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v  209 (257)
T 1g6h_A          139 EFLKLSHLYDRK---------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII  209 (257)
T ss_dssp             HHTTCGGGTTSB---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHcCCchhhCCC---------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            999998766553         679999999999999999999999999999999999999999888764   38999999


Q ss_pred             ecCcchhh
Q psy11400        288 SHRKSLWT  295 (298)
Q Consensus       288 tH~l~~~~  295 (298)
                      ||+++.+.
T Consensus       210 tHd~~~~~  217 (257)
T 1g6h_A          210 EHRLDIVL  217 (257)
T ss_dssp             CSCCSTTG
T ss_pred             ecCHHHHH
Confidence            99998765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.1e-38  Score=289.15  Aligned_cols=178  Identities=23%  Similarity=0.245  Sum_probs=146.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus        24 ~l~i~~l~~~y~~-~~--------vL~~vsl~i~~Gei~~li--------G~NGsGKSTLlk~-------l----~Gl~~   75 (263)
T 2olj_A           24 MIDVHQLKKSFGS-LE--------VLKGINVHIREGEVVVVI--------GPSGSGKSTFLRC-------L----NLLED   75 (263)
T ss_dssp             SEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEEeEEEEECC-EE--------EEEeeEEEEcCCCEEEEE--------cCCCCcHHHHHHH-------H----HcCCC
Confidence            6999999999952 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC-------------CCcEEEEcCcCCCCC-CCHHHHHccCC-cchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKPP-------------RGKLFYVPQRPYMTL-GTLRDQVIYPH-TKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~~-------------r~~i~~v~Q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|....             +++|+||||++.++. .|++||+.++. ..... ......+++.++++.+++.++.+
T Consensus        76 p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~  154 (263)
T 2olj_A           76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKW-PREKAEAKAMELLDKVGLKDKAH  154 (263)
T ss_dssp             CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred             CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhc
Confidence            9999985311             235999999998775 49999998742 10000 00011346788999999987665


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+|||||||||+|||||+.+|++|||||||++||+.++..+.+++++   .|+|||+|||+++.+.
T Consensus       155 ~~---------~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~  223 (263)
T 2olj_A          155 AY---------PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR  223 (263)
T ss_dssp             SC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence            53         679999999999999999999999999999999999999998887754   3899999999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-38  Score=282.34  Aligned_cols=177  Identities=17%  Similarity=0.145  Sum_probs=144.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus         6 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~l~--------G~nGsGKSTLl~~-------l----~Gl~~   57 (240)
T 1ji0_A            6 VLEVQSLHVYYGA-IH--------AIKGIDLKVPRGQIVTLI--------GANGAGKTTTLSA-------I----AGLVR   57 (240)
T ss_dssp             EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEEeEEEEECC-ee--------EEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            6899999999953 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC------------CCcEEEEcCcCCCCCC-CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcC-Cchhhhh
Q psy11400        156 LFGGTVTKPP------------RGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQ-LGYILNR  221 (298)
Q Consensus       156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~-l~~~~~~  221 (298)
                      |++|+|....            +++|+||||++.++.. |++||+.++....  .......+.+.++++.++ +.+..++
T Consensus        58 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~  135 (240)
T 1ji0_A           58 AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQ  135 (240)
T ss_dssp             CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTS
T ss_pred             CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcC
Confidence            9999985311            2359999999988765 9999998853110  001111345677788884 7655444


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                               .+.+|||||||||+|||||+++|++|||||||++||+.++..+.+.+++   .|+|+|+|||+++.+.
T Consensus       136 ---------~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~  203 (240)
T 1ji0_A          136 ---------LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL  203 (240)
T ss_dssp             ---------BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred             ---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence                     3789999999999999999999999999999999999999999888764   4899999999997653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2e-38  Score=287.16  Aligned_cols=178  Identities=20%  Similarity=0.186  Sum_probs=146.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|.+ ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+.+
T Consensus         6 ~l~i~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~li--------G~nGsGKSTLlk~-------l----~Gl~~   57 (262)
T 1b0u_A            6 KLHVIDLHKRYGG-HE--------VLKGVSLQARAGDVISII--------GSSGSGKSTFLRC-------I----NFLEK   57 (262)
T ss_dssp             CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEeeEEEEECC-EE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            6999999999952 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCC-cchhhhhcCCCHHHHHHH
Q psy11400        156 LFGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPH-TKEDMIQKGITDADLTEY  209 (298)
Q Consensus       156 ~~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~i~~~  209 (298)
                      |++|+|...                        .+++|+||||++.++. .|++||+.++. ..... ......+++.++
T Consensus        58 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~  136 (262)
T 1b0u_A           58 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL-SKHDARERALKY  136 (262)
T ss_dssp             CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred             CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCC-CHHHHHHHHHHH
Confidence            999998531                        1235999999998765 59999998742 10000 000113467889


Q ss_pred             HHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEE
Q psy11400        210 LQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLF  285 (298)
Q Consensus       210 l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiI  285 (298)
                      ++.+++.++ .+++         +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++   .|+|||
T Consensus       137 l~~~~L~~~~~~~~---------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi  207 (262)
T 1b0u_A          137 LAKVGIDERAQGKY---------PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV  207 (262)
T ss_dssp             HHHTTCCHHHHTSC---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHcCCCchhhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            999999877 6653         679999999999999999999999999999999999999998887754   389999


Q ss_pred             EEecCcchhh
Q psy11400        286 TVSHRKSLWT  295 (298)
Q Consensus       286 iitH~l~~~~  295 (298)
                      +|||+++.+.
T Consensus       208 ~vtHd~~~~~  217 (262)
T 1b0u_A          208 VVTHEMGFAR  217 (262)
T ss_dssp             EECSCHHHHH
T ss_pred             EEeCCHHHHH
Confidence            9999998765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=9e-38  Score=282.02  Aligned_cols=180  Identities=17%  Similarity=0.132  Sum_probs=148.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.++++||++.|. +..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|++
T Consensus        14 ~~l~i~~l~~~y~-~~~--------vl~~vsl~i~~Gei~~l~--------G~NGsGKSTLlk~-------l----~Gl~   65 (256)
T 1vpl_A           14 GAVVVKDLRKRIG-KKE--------ILKGISFEIEEGEIFGLI--------GPNGAGKTTTLRI-------I----STLI   65 (256)
T ss_dssp             CCEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred             CeEEEEEEEEEEC-CEE--------EEEeeEEEEcCCcEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            4799999999995 333        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc----------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        155 PLFGGTVTKP----------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       155 ~~~~G~i~~~----------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      +|++|+|...          .+++|+||||++.++. .|++||+.++...... ......+++.++++.+++.++.+++ 
T Consensus        66 ~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~-  143 (256)
T 1vpl_A           66 KPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDR-  143 (256)
T ss_dssp             CCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSB-
T ss_pred             CCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCCchHhcCC-
Confidence            9999998532          1357999999998775 4999999874211000 0000124678899999998776653 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                              +.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++   .|+|||++||+++.+..
T Consensus       144 --------~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  211 (256)
T 1vpl_A          144 --------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF  211 (256)
T ss_dssp             --------GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred             --------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence                    679999999999999999999999999999999999999999888764   48999999999987654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=2.3e-38  Score=299.97  Aligned_cols=178  Identities=20%  Similarity=0.228  Sum_probs=148.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||++.|+ +..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~yg-~~~--------~L~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl~~   54 (381)
T 3rlf_A            3 SVQLQNVTKAWG-EVV--------VSKDINLDIHEGEFVVFV--------GPSGCGKSTLLRM-------I----AGLET   54 (381)
T ss_dssp             CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             EEEEEeEEEEEC-CEE--------EEeeeEEEECCCCEEEEE--------cCCCchHHHHHHH-------H----HcCCC
Confidence            489999999995 233        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|..         +.++.||||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++   
T Consensus        55 p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~---  130 (381)
T 3rlf_A           55 ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK---  130 (381)
T ss_dssp             CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTCC---
T ss_pred             CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC---
Confidence            99999853         12457999999998875 6999999986421100 0011235688899999998777663   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       131 ------p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~  198 (381)
T 3rlf_A          131 ------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM  198 (381)
T ss_dssp             ------GGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH
T ss_pred             ------hhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence                  789999999999999999999999999999999999998888776653    4999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.8e-38  Score=297.02  Aligned_cols=184  Identities=18%  Similarity=0.170  Sum_probs=157.4

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ...|+++||++.|+.+...       +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+
T Consensus        17 ~~~i~~~~l~~~y~~~~~~-------~L~~vsl~i~~Ge~~~ll--------GpsGsGKSTLLr~-------i----aGl   70 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNA-------ILENISFSISPGQRVGLL--------GRTGSGKSTLLSA-------F----LRL   70 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCC-------SEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----HTC
T ss_pred             CCeEEEEEEEEEecCCCeE-------EeeceeEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hCC
Confidence            3569999999999744332       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400        154 WPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-  221 (298)
Q Consensus       154 ~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-  221 (298)
                      ++ ++|+|...           .+++|+||||++.+|.+|++||+.+..        ....+++.++++.+++.++.++ 
T Consensus        71 ~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~--------~~~~~~v~~~l~~~~L~~~~~~~  141 (390)
T 3gd7_A           71 LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA--------AHSDQEIWKVADEVGLRSVIEQF  141 (390)
T ss_dssp             SE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC--------CSCHHHHHHHHHHTTCHHHHTTS
T ss_pred             CC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc--------ccCHHHHHHHHHHhCCHHHHhhc
Confidence            88 88998632           135799999999999999999997532        2346778899999999988877 


Q ss_pred             cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      +..+++... .+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++  .++|+|+|||+++.+..
T Consensus       142 p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~  219 (390)
T 3gd7_A          142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE  219 (390)
T ss_dssp             TTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTT
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHh
Confidence            555666554 5678999999999999999999999999999999999999999998876  37999999999987654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=7.7e-38  Score=283.97  Aligned_cols=178  Identities=19%  Similarity=0.175  Sum_probs=149.2

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|++
T Consensus        10 ~~l~~~~l~~~~~~-~~--------vL~~vsl~i~~Ge~~~li--------G~nGsGKSTLl~~-------l----~Gl~   61 (266)
T 4g1u_C           10 ALLEASHLHYHVQQ-QA--------LINDVSLHIASGEMVAII--------GPNGAGKSTLLRL-------L----TGYL   61 (266)
T ss_dssp             CEEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CCTTSCHHHHHHH-------H----TSSS
T ss_pred             ceEEEEeEEEEeCC-ee--------EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence            36899999999953 33        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc-----------CCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhc
Q psy11400        155 PLFGGTVTKP-----------PRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNRE  222 (298)
Q Consensus       155 ~~~~G~i~~~-----------~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~  222 (298)
                      +|++|+|...           .++.++|+||++.+ +..|++||+.++....   ......+++.++++.+++.++.+++
T Consensus        62 ~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~  138 (266)
T 4g1u_C           62 SPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRD  138 (266)
T ss_dssp             CCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSB
T ss_pred             CCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCC
Confidence            9999998632           12459999999976 5679999998864211   1122356788999999998766553


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhc------CCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcc
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYH------RPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKS  292 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~------~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~  292 (298)
                               +.+|||||||||+|||||++      +|++|||||||||||+..+..+.+++++    .++|+|+|||+++
T Consensus       139 ---------~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~  209 (266)
T 4g1u_C          139 ---------YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN  209 (266)
T ss_dssp             ---------GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred             ---------cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence                     67999999999999999999      9999999999999999999998887764    2579999999998


Q ss_pred             hhhh
Q psy11400        293 LWTH  296 (298)
Q Consensus       293 ~~~~  296 (298)
                      .+..
T Consensus       210 ~~~~  213 (266)
T 4g1u_C          210 LAAL  213 (266)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5.1e-38  Score=295.49  Aligned_cols=180  Identities=25%  Similarity=0.265  Sum_probs=149.4

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++|+++.|+.+..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.
T Consensus        13 ~~l~~~~l~~~y~g~~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~   65 (355)
T 1z47_A           13 MTIEFVGVEKIYPGGAR--------SVRGVSFQIREGEMVGLL--------GPSGSGKTTILRL-------I----AGLE   65 (355)
T ss_dssp             EEEEEEEEEECCTTSTT--------CEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTSS
T ss_pred             ceEEEEEEEEEEcCCCE--------EEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            46999999999942333        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        155 PLFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       155 ~~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      +|++|+|...         .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++  
T Consensus        66 ~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~--  142 (355)
T 1z47_A           66 RPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV-PKDEMDARVRELLRFMRLESYANRF--  142 (355)
T ss_dssp             CCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTSC--
T ss_pred             CCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCC--
Confidence            9999998531         2467999999998775 6999999986421100 0001135688899999998777663  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                             +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       143 -------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~  210 (355)
T 1z47_A          143 -------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEAL  210 (355)
T ss_dssp             -------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred             -------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence                   679999999999999999999999999999999999999988877654    3899999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.6e-37  Score=292.63  Aligned_cols=178  Identities=20%  Similarity=0.243  Sum_probs=148.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~   54 (359)
T 2yyz_A            3 SIRVVNLKKYFGK-VK--------AVDGVSFEVKDGEFVALL--------GPSGCGKTTTLLM-------L----AGIYK   54 (359)
T ss_dssp             CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----HTSSC
T ss_pred             EEEEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------cCCCchHHHHHHH-------H----HCCCC
Confidence            4899999999952 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++   
T Consensus        55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~---  130 (359)
T 2yyz_A           55 PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI-SKDEVEKRVVEIARKLLIDNLLDRK---  130 (359)
T ss_dssp             CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS-HHHHTTHHHHHHHHHTTCGGGTTSC---
T ss_pred             CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcCC---
Confidence            999998531         2467999999998775 6999999987432110 0011235688999999998877663   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       131 ------~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~  198 (359)
T 2yyz_A          131 ------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAM  198 (359)
T ss_dssp             ------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred             ------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence                  679999999999999999999999999999999999999988877654    3899999999998764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-37  Score=278.35  Aligned_cols=173  Identities=23%  Similarity=0.267  Sum_probs=145.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|+   .        +|+|+||++++ ++++|+        |||  ||  |+++       +    +|+.+
T Consensus         1 ml~~~~l~~~y~---~--------~l~~isl~i~~-e~~~li--------G~nGsGKSTLl~~-------l----~Gl~~   49 (240)
T 2onk_A            1 MFLKVRAEKRLG---N--------FRLNVDFEMGR-DYCVLL--------GPTGAGKSVFLEL-------I----AGIVK   49 (240)
T ss_dssp             CCEEEEEEEEET---T--------EEEEEEEEECS-SEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             CEEEEEEEEEeC---C--------EEeeeEEEECC-EEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            368999999994   2        69999999999 999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .+++|+||||++.++. .|++||+.++...... .  ...+++.++++.+++.++.+++   
T Consensus        50 p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~---  123 (240)
T 2onk_A           50 PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER-V--ERDRRVREMAEKLGIAHLLDRK---  123 (240)
T ss_dssp             CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH-H--HHHHHHHHHHHTTTCTTTTTCC---
T ss_pred             CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC-c--hHHHHHHHHHHHcCCHHHhcCC---
Confidence            999998531         2457999999998776 4999999986532110 0  1145678899999997766553   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+||||||||++|||||+++|+++||||||++||+.++..+.+++++    .|+|+|++||+++.+.
T Consensus       124 ------~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~  191 (240)
T 2onk_A          124 ------PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA  191 (240)
T ss_dssp             ------GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred             ------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                  679999999999999999999999999999999999999999887754    3899999999998654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-37  Score=293.45  Aligned_cols=178  Identities=20%  Similarity=0.216  Sum_probs=147.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|. +..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~y~-~~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~   54 (362)
T 2it1_A            3 EIKLENIVKKFG-NFT--------ALNNINLKIKDGEFMALL--------GPSGSGKSTLLYT-------I----AGIYK   54 (362)
T ss_dssp             CEEEEEEEEESS-SSE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             EEEEEeEEEEEC-CEE--------EEEeeEEEECCCCEEEEE--------CCCCchHHHHHHH-------H----hcCCC
Confidence            489999999994 233        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++   
T Consensus        55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~---  130 (362)
T 2it1_A           55 PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRY---  130 (362)
T ss_dssp             CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCC---
T ss_pred             CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhhCC---
Confidence            999998531         2467999999998875 6999999986421100 0001135678899999998776653   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       131 ------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~  198 (362)
T 2it1_A          131 ------PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEAL  198 (362)
T ss_dssp             ------GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred             ------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence                  679999999999999999999999999999999999999988877654    3899999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.5e-37  Score=292.51  Aligned_cols=180  Identities=22%  Similarity=0.226  Sum_probs=147.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|.+....       +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~i~~l~~~y~~~~~~-------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~   56 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVV-------ALDNVNINIENGERFGIL--------GPSGAGKTTFMRI-------I----AGLDV   56 (353)
T ss_dssp             CEEEEEEEEEEGGGTEE-------EEEEEEEEECTTCEEEEE--------CSCHHHHHHHHHH-------H----HTSSC
T ss_pred             EEEEEeEEEEECCEeee-------eEeceEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence            48999999999532111       799999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|..              +.+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+
T Consensus        57 p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~  135 (353)
T 1oxx_K           57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM-SKEEIRKRVEEVAKILDIHHVLN  135 (353)
T ss_dssp             CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred             CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhc
Confidence            99999742              12457999999998875 5999999987432100 00011356888999999987776


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      ++         +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       136 ~~---------~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~  205 (353)
T 1oxx_K          136 HF---------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF  205 (353)
T ss_dssp             SC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred             CC---------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            63         679999999999999999999999999999999999988888877654    4899999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.5e-37  Score=292.60  Aligned_cols=178  Identities=20%  Similarity=0.179  Sum_probs=143.7

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus        11 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~   62 (372)
T 1v43_A           11 EVKLENLTKRFGN-FT--------AVNKLNLTIKDGEFLVLL--------GPSGCGKTTTLRM-------I----AGLEE   62 (372)
T ss_dssp             CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             eEEEEEEEEEECC-EE--------EEeeeEEEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCC
Confidence            4899999999952 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .+++|+||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.+++   
T Consensus        63 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~---  138 (372)
T 1v43_A           63 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNRY---  138 (372)
T ss_dssp             CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTSC---
T ss_pred             CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhHhcCC---
Confidence            999998531         2457999999998775 6999999997532110 0001134678899999998877664   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       139 ------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~  206 (372)
T 1v43_A          139 ------PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM  206 (372)
T ss_dssp             ------TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred             ------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence                  689999999999999999999999999999999999999988877654    3899999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=6.5e-37  Score=279.68  Aligned_cols=180  Identities=23%  Similarity=0.163  Sum_probs=145.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++||++.|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|++
T Consensus        20 ~~l~~~~l~~~y~~-~~--------vL~~isl~i~~Ge~~~li--------G~NGsGKSTLlk~-------l----~Gl~   71 (279)
T 2ihy_A           20 MLIQLDQIGRMKQG-KT--------ILKKISWQIAKGDKWILY--------GLNGAGKTTLLNI-------L----NAYE   71 (279)
T ss_dssp             EEEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred             ceEEEEeEEEEECC-EE--------EEEeeeEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            36999999999953 33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccC-------------CCcEEEEcCcCCC-CC--CCHHHHHccCCcch-hhhhcC--CCHHHHHHHHHHcCC
Q psy11400        155 PLFGGTVTKPP-------------RGKLFYVPQRPYM-TL--GTLRDQVIYPHTKE-DMIQKG--ITDADLTEYLQKVQL  215 (298)
Q Consensus       155 ~~~~G~i~~~~-------------r~~i~~v~Q~~~l-~~--~tv~eni~~~~~~~-~~~~~~--~~~~~i~~~l~~~~l  215 (298)
                      +|++|+|....             +++|+||||++.+ +.  .|++||+.++.... ......  ...+++.++++.+++
T Consensus        72 ~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl  151 (279)
T 2ihy_A           72 PATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM  151 (279)
T ss_dssp             CCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC
Confidence            99999985321             3569999999854 43  39999998864210 000000  113467888999999


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEE--EEEecC
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITL--FTVSHR  290 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~Ti--IiitH~  290 (298)
                      .++.+++         +.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++++   .|+||  |+|||+
T Consensus       152 ~~~~~~~---------~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd  222 (279)
T 2ihy_A          152 SAKAQQY---------IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF  222 (279)
T ss_dssp             GGGTTSB---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             hhHhcCC---------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence            7766553         679999999999999999999999999999999999999999888764   38999  999999


Q ss_pred             cchhh
Q psy11400        291 KSLWT  295 (298)
Q Consensus       291 l~~~~  295 (298)
                      ++.+.
T Consensus       223 ~~~~~  227 (279)
T 2ihy_A          223 IEEIT  227 (279)
T ss_dssp             GGGCC
T ss_pred             HHHHH
Confidence            98764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=2.7e-37  Score=292.48  Aligned_cols=178  Identities=21%  Similarity=0.239  Sum_probs=147.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~   54 (372)
T 1g29_1            3 GVRLVDVWKVFGE-VT--------AVREMSLEVKDGEFMILL--------GPSGCGKTTTLRM-------I----AGLEE   54 (372)
T ss_dssp             EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTSSC
T ss_pred             EEEEEeEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCcHHHHHHHH-------H----HcCCC
Confidence            4899999999952 33        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec---------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTK---------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~---------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|..               +.+++||||||++.+|+ .|++||+.|+...... ......+++.++++.+++.++.
T Consensus        55 p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~  133 (372)
T 1g29_1           55 PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELL  133 (372)
T ss_dssp             CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGT
T ss_pred             CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHh
Confidence            99999742               12457999999998764 6999999986421100 0001134678899999998777


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +++         +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       134 ~r~---------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~  204 (372)
T 1g29_1          134 NRK---------PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM  204 (372)
T ss_dssp             TCC---------GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred             cCC---------cccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence            663         689999999999999999999999999999999999999888877654    4899999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=3e-37  Score=289.76  Aligned_cols=174  Identities=18%  Similarity=0.230  Sum_probs=147.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|+++.|.+  .        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         1 ml~~~~l~~~y~~--~--------~l~~vsl~i~~Ge~~~ll--------GpnGsGKSTLLr~-------i----aGl~~   51 (348)
T 3d31_A            1 MIEIESLSRKWKN--F--------SLDNLSLKVESGEYFVIL--------GPTGAGKTLFLEL-------I----AGFHV   51 (348)
T ss_dssp             CEEEEEEEEECSS--C--------EEEEEEEEECTTCEEEEE--------CCCTHHHHHHHHH-------H----HTSSC
T ss_pred             CEEEEEEEEEECC--E--------EEeeeEEEEcCCCEEEEE--------CCCCccHHHHHHH-------H----HcCCC
Confidence            3789999999942  2        799999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .+++|+||||++.+|+ .|++||+.|+....    .....+++.++++.+++.++.+++   
T Consensus        52 p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~----~~~~~~~v~~~l~~~~L~~~~~~~---  124 (348)
T 3d31_A           52 PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK----KIKDPKRVLDTARDLKIEHLLDRN---  124 (348)
T ss_dssp             CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH----CCCCHHHHHHHHHHTTCTTTTTSC---
T ss_pred             CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHcCCchHhcCC---
Confidence            999998632         1346999999998875 59999999864211    111226788999999998777663   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                            +.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+++    .|+|+|+|||+++.+.
T Consensus       125 ------~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~  192 (348)
T 3d31_A          125 ------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR  192 (348)
T ss_dssp             ------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             ------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence                  679999999999999999999999999999999999999988877654    4899999999988654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=8.4e-37  Score=276.69  Aligned_cols=172  Identities=21%  Similarity=0.249  Sum_probs=147.5

Q ss_pred             cEEEeeeeEecCCC---CCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         80 LRGRLGITLGLRSG---GLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        80 ~i~~~~v~~~~~~~---~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      +++++|+++.|+++   ..        +|+|+||+|+ |++++|+        |||  ||  |+++       +    +|
T Consensus         1 ml~~~~l~~~y~~~~~~~~--------il~~vsl~i~-Ge~~~i~--------G~NGsGKSTLlk~-------l----~G   52 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERF--------SLENINLEVN-GEKVIIL--------GPNGSGKTTLLRA-------I----SG   52 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEE--------EEEEEEEEEC-SSEEEEE--------CCTTSSHHHHHHH-------H----TT
T ss_pred             CEEEEEEEEEeCCCCccce--------eEEeeeEEEC-CEEEEEE--------CCCCCCHHHHHHH-------H----hC
Confidence            37899999999631   33        8999999999 9999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc--------CCCcEE-EEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhc
Q psy11400        153 LWPLFGGTVTKP--------PRGKLF-YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNRE  222 (298)
Q Consensus       153 l~~~~~G~i~~~--------~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~  222 (298)
                      ++ |++|+|...        .+++|+ ||||++.+ ..|++||+.++...     .....+++.++++.+++. +..+++
T Consensus        53 l~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~  125 (263)
T 2pjz_A           53 LL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEEL-----KGLDRDLFLEMLKALKLGEEILRRK  125 (263)
T ss_dssp             SS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHH-----TCCCHHHHHHHHHHTTCCGGGGGSB
T ss_pred             CC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhh-----cchHHHHHHHHHHHcCCChhHhcCC
Confidence            99 999998532        145799 99999988 88999999874310     133467788999999998 766653


Q ss_pred             CCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        223 KGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       223 ~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                               +.+||||||||++|||||+++|+++||||||++||+.++..+.+.+++...|+|++||+++.+.
T Consensus       126 ---------~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~  189 (263)
T 2pjz_A          126 ---------LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN  189 (263)
T ss_dssp             ---------GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred             ---------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence                     6799999999999999999999999999999999999999999999875449999999998764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=1.9e-36  Score=272.28  Aligned_cols=168  Identities=18%  Similarity=0.161  Sum_probs=144.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||++.     .        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+++
T Consensus         4 ~l~~~~l~~~-----~--------vl~~vsl~i~~Ge~~~li--------G~NGsGKSTLlk~-------l----~Gl~~   51 (249)
T 2qi9_C            4 VMQLQDVAES-----T--------RLGPLSGEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGMTS   51 (249)
T ss_dssp             EEEEEEEEET-----T--------TEEEEEEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             EEEEEceEEE-----E--------EEeeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCCC
Confidence            5899999986     3        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC-----------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        156 LFGGTVTKPP-----------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      |+ |+|....           +++|+||||++.++. .|++||+.++...      ....+++.++++.+++.++.+++ 
T Consensus        52 p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~-  123 (249)
T 2qi9_C           52 GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD------KTRTELLNDVAGALALDDKLGRS-  123 (249)
T ss_dssp             CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS------TTCHHHHHHHHHHTTCGGGTTSB-
T ss_pred             CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc------CCcHHHHHHHHHHcCChhHhcCC-
Confidence            99 9986321           346999999998765 5999999986321      11266788999999998766553 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhcCCC-------EEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYHRPQ-------FAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~-------iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                              +.+||||||||++|||||+.+|+       +|||||||++||+.++..+.+++++   .|+|+|++||+++.
T Consensus       124 --------~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~  195 (249)
T 2qi9_C          124 --------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH  195 (249)
T ss_dssp             --------GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             --------hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                    67999999999999999999999       9999999999999999999888764   38999999999987


Q ss_pred             hh
Q psy11400        294 WT  295 (298)
Q Consensus       294 ~~  295 (298)
                      +.
T Consensus       196 ~~  197 (249)
T 2qi9_C          196 TL  197 (249)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4.1e-37  Score=276.68  Aligned_cols=180  Identities=18%  Similarity=0.160  Sum_probs=140.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc--
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL--  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l--  153 (298)
                      +++++||++.|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+  
T Consensus         3 ~l~~~~l~~~y~~-~~--------vl~~vsl~i~~Ge~~~l~--------G~nGsGKSTLlk~-------l----~Gl~~   54 (250)
T 2d2e_A            3 QLEIRDLWASIDG-ET--------ILKGVNLVVPKGEVHALM--------GPNGAGKSTLGKI-------L----AGDPE   54 (250)
T ss_dssp             EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTCTT
T ss_pred             eEEEEeEEEEECC-EE--------EEeceEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            5899999999953 33        999999999999999999        999  99  9999       8    888  


Q ss_pred             cccCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcC--CCHHHHHHHHHHcCCc-h
Q psy11400        154 WPLFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKG--ITDADLTEYLQKVQLG-Y  217 (298)
Q Consensus       154 ~~~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~--~~~~~i~~~l~~~~l~-~  217 (298)
                      ++|++|+|....            +..++|+||+|.++. .|++||+.++..........  ...+++.++++.+++. +
T Consensus        55 ~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  134 (250)
T 2d2e_A           55 YTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES  134 (250)
T ss_dssp             CEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG
T ss_pred             CCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh
Confidence            789999985321            235899999998776 59999997642110000000  0134677889999994 5


Q ss_pred             hhhhcCCcccccccCCC-CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        218 ILNREKGWDTVADWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       218 ~~~~~~g~d~~~~~~~~-LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                      +.+++         +.+ |||||||||+|||||+++|++||||||||+||+.++..+.+++++   .|+|+|+|||+++.
T Consensus       135 ~~~~~---------~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~  205 (250)
T 2d2e_A          135 YLSRY---------LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI  205 (250)
T ss_dssp             GGGSB---------TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred             HhcCC---------cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            66553         567 999999999999999999999999999999999999999988865   37999999999988


Q ss_pred             hhh
Q psy11400        294 WTH  296 (298)
Q Consensus       294 ~~~  296 (298)
                      +..
T Consensus       206 ~~~  208 (250)
T 2d2e_A          206 LNY  208 (250)
T ss_dssp             GGT
T ss_pred             HHH
Confidence            764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=3.9e-36  Score=272.83  Aligned_cols=182  Identities=18%  Similarity=0.196  Sum_probs=143.3

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      ..+++++||++.|. +..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|+
T Consensus        18 ~~~l~~~~l~~~y~-~~~--------vl~~vsl~i~~Ge~~~l~--------G~NGsGKSTLlk~-------l----~Gl   69 (267)
T 2zu0_C           18 SHMLSIKDLHVSVE-DKA--------ILRGLSLDVHPGEVHAIM--------GPNGSGKSTLSAT-------L----AGR   69 (267)
T ss_dssp             --CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTC
T ss_pred             CceEEEEeEEEEEC-CEE--------EEEeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCC
Confidence            45799999999994 333        999999999999999999        999  99  9999       8    888


Q ss_pred             --cccCCceeeccC------------CCcEEEEcCcCCCCC-CCHHHHHccCCcchh--hhhcCCC----HHHHHHHHHH
Q psy11400        154 --WPLFGGTVTKPP------------RGKLFYVPQRPYMTL-GTLRDQVIYPHTKED--MIQKGIT----DADLTEYLQK  212 (298)
Q Consensus       154 --~~~~~G~i~~~~------------r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~----~~~i~~~l~~  212 (298)
                        ++|++|+|....            +..|+||||++.++. .|+.+|+.++.....  .......    .+++.++++.
T Consensus        70 ~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (267)
T 2zu0_C           70 EDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL  149 (267)
T ss_dssp             TTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHH
Confidence              578899985321            224999999998765 599999876321000  0000111    2457788999


Q ss_pred             cCCc-hhhhhcCCcccccccCC-CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEE
Q psy11400        213 VQLG-YILNREKGWDTVADWID-VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTV  287 (298)
Q Consensus       213 ~~l~-~~~~~~~g~d~~~~~~~-~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIii  287 (298)
                      +++. ++.+++         +. +|||||||||+|||||+.+|++|||||||++||+.++..+.+++++.   |+|+|+|
T Consensus       150 ~gl~~~~~~~~---------~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv  220 (267)
T 2zu0_C          150 LKMPEDLLTRS---------VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV  220 (267)
T ss_dssp             TTCCTTTTTSB---------TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             cCCChhHhcCC---------cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            9985 344442         44 59999999999999999999999999999999999999999998763   7999999


Q ss_pred             ecCcchhhh
Q psy11400        288 SHRKSLWTH  296 (298)
Q Consensus       288 tH~l~~~~~  296 (298)
                      ||+++.+..
T Consensus       221 tHd~~~~~~  229 (267)
T 2zu0_C          221 THYQRILDY  229 (267)
T ss_dssp             CSSGGGGGT
T ss_pred             eeCHHHHHh
Confidence            999987753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.5e-35  Score=272.09  Aligned_cols=177  Identities=18%  Similarity=0.229  Sum_probs=135.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++||++.+   ..        +|+|+||+|++|++++|+        |||  ||  |+++       +    +|++
T Consensus        39 ~~l~~~~l~~~~---~~--------vl~~isl~i~~Ge~~~i~--------G~NGsGKSTLlk~-------l----~Gl~   88 (290)
T 2bbs_A           39 DSLSFSNFSLLG---TP--------VLKDINFKIERGQLLAVA--------GSTGAGKTSLLMM-------I----MGEL   88 (290)
T ss_dssp             -----------C---CC--------SEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----TTSS
T ss_pred             ceEEEEEEEEcC---ce--------EEEeeEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence            469999999853   33        899999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI  232 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~  232 (298)
                      +|++|+|....  +|+||||++.+|..|++||+. +..        .....+.++++.+++.+.+++ +.++++..+ .+
T Consensus        89 ~p~~G~I~~~g--~i~~v~Q~~~l~~~tv~enl~-~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  157 (290)
T 2bbs_A           89 EPSEGKIKHSG--RISFCSQNSWIMPGTIKENII-GVS--------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG  157 (290)
T ss_dssp             CEEEEEEECCS--CEEEECSSCCCCSSBHHHHHH-TTC--------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred             CCCCcEEEECC--EEEEEeCCCccCcccHHHHhh-Ccc--------cchHHHHHHHHHhChHHHHHhccccccchhcCcc
Confidence            99999997643  699999999988889999998 431        122345566777788766554 334444333 56


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~  296 (298)
                      .+||||||||++|||||+++|+++||||||++||+.++..+.+.+ ++  .++|+|+|||+++.+..
T Consensus       158 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~  224 (290)
T 2bbs_A          158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK  224 (290)
T ss_dssp             CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence            899999999999999999999999999999999999999999863 33  38999999999987654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=4.6e-31  Score=264.11  Aligned_cols=172  Identities=20%  Similarity=0.150  Sum_probs=144.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|.  ..        .|+++||+|++||+++|+        |||  ||  |+++       +    .|+.+
T Consensus       357 ~l~~~~l~~~~~--~~--------~l~~~~~~v~~Gei~~i~--------G~NGsGKSTLlk~-------l----~Gl~~  407 (607)
T 3bk7_A          357 LVEYPRLVKDYG--SF--------KLEVEPGEIRKGEVIGIV--------GPNGIGKTTFVKM-------L----AGVEE  407 (607)
T ss_dssp             EEEECCEEEECS--SC--------EEEECCEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             EEEEeceEEEec--ce--------EEEecccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            689999999994  23        689999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCC
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDV  234 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~  234 (298)
                      |++|+|..  ..+|+|+||++.. +..|+.+++.....  ..  . ...+.+.++++.+++.++.+++         +.+
T Consensus       408 p~~G~I~~--~~~i~~v~Q~~~~~~~~tv~e~~~~~~~--~~--~-~~~~~~~~~l~~~~l~~~~~~~---------~~~  471 (607)
T 3bk7_A          408 PTEGKVEW--DLTVAYKPQYIKAEYEGTVYELLSKIDS--SK--L-NSNFYKTELLKPLGIIDLYDRN---------VED  471 (607)
T ss_dssp             CSBSCCCC--CCCEEEECSSCCCCCSSBHHHHHHHHHH--HH--H-HCHHHHHHTHHHHTCTTTTTSB---------GGG
T ss_pred             CCceEEEE--eeEEEEEecCccCCCCCcHHHHHHhhhc--cC--C-CHHHHHHHHHHHcCCchHhcCC---------hhh
Confidence            99999875  4579999999865 56799998865210  00  0 1245677889999997666553         679


Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       235 LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      |||||||||+|||||+.+|++|||||||++||+.....+.+++++    .|.|+|+|||+++.+..
T Consensus       472 LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~  537 (607)
T 3bk7_A          472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY  537 (607)
T ss_dssp             CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            999999999999999999999999999999999999988888764    38999999999987753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=5.3e-31  Score=260.54  Aligned_cols=173  Identities=20%  Similarity=0.149  Sum_probs=143.5

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|.  ..        .++++||+|++||+++|+        |||  ||  |+++       +    .|+.
T Consensus       286 ~~l~~~~l~~~~~--~~--------~l~~~~~~i~~Ge~~~i~--------G~NGsGKSTLlk~-------l----~Gl~  336 (538)
T 1yqt_A          286 TLVTYPRLVKDYG--SF--------RLEVEPGEIKKGEVIGIV--------GPNGIGKTTFVKM-------L----AGVE  336 (538)
T ss_dssp             EEEEECCEEEEET--TE--------EEEECCEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----HTSS
T ss_pred             eEEEEeeEEEEEC--CE--------EEEeCccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            3689999999984  23        689999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+|..  ..+|+|+||++.. +..|+.+++.....  ..  . ...+.+.++++.+++.+..+++         +.
T Consensus       337 ~p~~G~i~~--~~~i~~v~Q~~~~~~~~tv~~~~~~~~~--~~--~-~~~~~~~~~l~~~~l~~~~~~~---------~~  400 (538)
T 1yqt_A          337 EPTEGKIEW--DLTVAYKPQYIKADYEGTVYELLSKIDA--SK--L-NSNFYKTELLKPLGIIDLYDRE---------VN  400 (538)
T ss_dssp             CCSBCCCCC--CCCEEEECSSCCCCCSSBHHHHHHHHHH--HH--H-TCHHHHHHTTTTTTCGGGTTSB---------GG
T ss_pred             CCCCeEEEE--CceEEEEecCCcCCCCCcHHHHHHhhhc--cC--C-CHHHHHHHHHHHcCChhhhcCC---------hh
Confidence            999999875  4579999999865 56799888764200  00  1 1245577788888886655543         67


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +|||||||||+|||||+.+|++|||||||++||+.+...+.+++++    .|.|||+|||+++.+..
T Consensus       401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~  467 (538)
T 1yqt_A          401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY  467 (538)
T ss_dssp             GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999999999998888764    48999999999987753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=1.1e-30  Score=258.15  Aligned_cols=175  Identities=19%  Similarity=0.164  Sum_probs=143.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++|+++.|.+  .        .+.+.||+|++||+++|+        |||  ||  |+++       +    .|+.
T Consensus       268 ~~l~~~~l~~~~~~--~--------~l~~~~~~i~~Gei~~i~--------G~nGsGKSTLl~~-------l----~Gl~  318 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD--F--------QLVVDNGEAKEGEIIGIL--------GPNGIGKTTFARI-------L----VGEI  318 (538)
T ss_dssp             EEEEECCEEEEETT--E--------EEEECCEEEETTCEEEEE--------CCTTSSHHHHHHH-------H----TTSS
T ss_pred             ceEEEcceEEEECC--E--------EEEeccceECCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCC
Confidence            35889999999852  3        688889999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+|... ...++|+||++.. +..|+++|+.+.....    .......+.++++.+++.++.++         .+.
T Consensus       319 ~p~~G~i~~~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~---------~~~  384 (538)
T 3ozx_A          319 TADEGSVTPE-KQILSYKPQRIFPNYDGTVQQYLENASKDA----LSTSSWFFEEVTKRLNLHRLLES---------NVN  384 (538)
T ss_dssp             CCSBCCEESS-CCCEEEECSSCCCCCSSBHHHHHHHHCSST----TCTTSHHHHHTTTTTTGGGCTTS---------BGG
T ss_pred             CCCCcEEEEC-CeeeEeechhcccccCCCHHHHHHHhhhhc----cchhHHHHHHHHHHcCCHHHhcC---------Chh
Confidence            9999999754 4579999999864 4679999987532110    01123456777888888765554         378


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +|||||||||+|||||+.+|++|||||||++||+.+...+++++++    .|+|||+|||+++.+..
T Consensus       385 ~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~  451 (538)
T 3ozx_A          385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY  451 (538)
T ss_dssp             GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999999999988887754    48999999999987754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.96  E-value=1.6e-29  Score=262.45  Aligned_cols=182  Identities=19%  Similarity=0.231  Sum_probs=144.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++|++|.|+++..+       +|+|+||+|++|++++|+        |||  ||  |+++       |    .|+.+
T Consensus       671 mL~v~nLs~~Y~g~~~~-------iL~dVSl~I~~GeivaIi--------GpNGSGKSTLLkl-------L----aGll~  724 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKP-------QITDINFQCSLSSRIAVI--------GPNGAGKSTLINV-------L----TGELL  724 (986)
T ss_dssp             EEEEEEEEECCTTCSSC-------SEEEEEEEEETTCEEEEC--------SCCCHHHHHHHHH-------H----TTSSC
T ss_pred             eEEEEeeEEEeCCCCce-------eeeccEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            69999999999743222       899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccCCCcEEEEcCcCCC-----CCCCHHHHHccCCc--------------------------------------
Q psy11400        156 LFGGTVTKPPRGKLFYVPQRPYM-----TLGTLRDQVIYPHT--------------------------------------  192 (298)
Q Consensus       156 ~~~G~i~~~~r~~i~~v~Q~~~l-----~~~tv~eni~~~~~--------------------------------------  192 (298)
                      |++|+|......+|+|++|++..     ...|+++++.+...                                      
T Consensus       725 P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~  804 (986)
T 2iw3_A          725 PTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG  804 (986)
T ss_dssp             CSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEE
T ss_pred             CCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhh
Confidence            99999987655579999998631     23466666532100                                      


Q ss_pred             ----------------------------c------hhh----------------------------hhcCCCHHHHHHHH
Q psy11400        193 ----------------------------K------EDM----------------------------IQKGITDADLTEYL  210 (298)
Q Consensus       193 ----------------------------~------~~~----------------------------~~~~~~~~~i~~~l  210 (298)
                                                  .      .+.                            .......+++.+++
T Consensus       805 i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~L  884 (986)
T 2iw3_A          805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHC  884 (986)
T ss_dssp             EEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHH
Confidence                                        0      000                            00012245677888


Q ss_pred             HHcCCch-h-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEe
Q psy11400        211 QKVQLGY-I-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVS  288 (298)
Q Consensus       211 ~~~~l~~-~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiit  288 (298)
                      +.+++.. + .++         .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|||+||
T Consensus       885 e~lGL~~~~~~~~---------~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiIS  955 (986)
T 2iw3_A          885 SMLGLDPEIVSHS---------RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT  955 (986)
T ss_dssp             HHTTCCHHHHHHS---------CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEEC
T ss_pred             HHcCCCchhhcCC---------CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence            8888864 3 333         2679999999999999999999999999999999999999999999998888999999


Q ss_pred             cCcchhhh
Q psy11400        289 HRKSLWTH  296 (298)
Q Consensus       289 H~l~~~~~  296 (298)
                      |+++.+..
T Consensus       956 HD~e~v~~  963 (986)
T 2iw3_A          956 HSAEFTKN  963 (986)
T ss_dssp             SCHHHHTT
T ss_pred             CCHHHHHH
Confidence            99987653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.96  E-value=8.5e-30  Score=254.92  Aligned_cols=166  Identities=19%  Similarity=0.202  Sum_probs=135.4

Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +|+++.|.....        +++|+| +|++||+++|+        |||  ||  |+++       +    +|+++|++|
T Consensus        95 ~~ls~~yg~~~~--------~l~~vs-~i~~Ge~~~Li--------G~NGsGKSTLlki-------L----~Gll~p~~G  146 (607)
T 3bk7_A           95 EDCVHRYGVNAF--------VLYRLP-IVKDGMVVGIV--------GPNGTGKTTAVKI-------L----AGQLIPNLC  146 (607)
T ss_dssp             GSEEEECSTTCC--------EEECCC-CCCTTSEEEEE--------CCTTSSHHHHHHH-------H----TTSSCCCTT
T ss_pred             CCeEEEECCCCe--------eeCCCC-CCCCCCEEEEE--------CCCCChHHHHHHH-------H----hCCCCCCCC
Confidence            899999953323        899999 99999999999        999  99  9999       8    999999999


Q ss_pred             eee---------c-------------cCCCcEEEEcCcCC----CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400        160 TVT---------K-------------PPRGKLFYVPQRPY----MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV  213 (298)
Q Consensus       160 ~i~---------~-------------~~r~~i~~v~Q~~~----l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~  213 (298)
                      ++.         .             ..+..+++++|...    ++.+|+.||+....          ..+++.++++.+
T Consensus       147 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----------~~~~~~~~L~~l  216 (607)
T 3bk7_A          147 EDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----------EVGKFEEVVKEL  216 (607)
T ss_dssp             TTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----------CSSCHHHHHHHT
T ss_pred             ccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----------HHHHHHHHHHHc
Confidence            851         0             01235889998743    33459999885421          123467889999


Q ss_pred             CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC
Q psy11400        214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR  290 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~  290 (298)
                      ++.++.+++         +.+|||||||||+|||||+++|++||||||||+||+.....+.+++++   .|+|+|+||||
T Consensus       217 gL~~~~~~~---------~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd  287 (607)
T 3bk7_A          217 ELENVLDRE---------LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD  287 (607)
T ss_dssp             TCTTGGGSB---------GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCchhCCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            998776664         679999999999999999999999999999999999999888887765   38999999999


Q ss_pred             cchhhh
Q psy11400        291 KSLWTH  296 (298)
Q Consensus       291 l~~~~~  296 (298)
                      ++.+..
T Consensus       288 l~~~~~  293 (607)
T 3bk7_A          288 LAVLDY  293 (607)
T ss_dssp             HHHHHH
T ss_pred             hHHHHh
Confidence            987653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-29  Score=253.63  Aligned_cols=170  Identities=21%  Similarity=0.172  Sum_probs=137.5

Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCC-----cEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA-----LNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g-----~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +++++.|+....        +++++||++.+|     |+++|+        |||  ||  |+++       +    +|+.
T Consensus       350 ~~~~~~y~~~~~--------~l~~vsl~v~~G~~~~GEiv~ii--------G~NGsGKSTLlk~-------l----~Gl~  402 (608)
T 3j16_B          350 ASRAFSYPSLKK--------TQGDFVLNVEEGEFSDSEILVMM--------GENGTGKTTLIKL-------L----AGAL  402 (608)
T ss_dssp             SSSCCEECCEEE--------ECSSCEEEECCEECCTTCEEEEE--------SCTTSSHHHHHHH-------H----HTSS
T ss_pred             cceeEEecCccc--------ccCceEEEEecCccccceEEEEE--------CCCCCcHHHHHHH-------H----hcCC
Confidence            556777764333        789999999999     789999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWID  233 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~  233 (298)
                      +|++|+..  .+..++|+||++.. +..|+++++......     .......+.++++.+++.++.+++         +.
T Consensus       403 ~p~~G~~~--~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~-----~~~~~~~~~~~l~~l~l~~~~~~~---------~~  466 (608)
T 3j16_B          403 KPDEGQDI--PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG-----QFLNPQFQTDVVKPLRIDDIIDQE---------VQ  466 (608)
T ss_dssp             CCSBCCCC--CSCCEEEECSSCCCCCCSBHHHHHHHHCSS-----TTTSHHHHHHTHHHHTSTTTSSSB---------SS
T ss_pred             CCCCCcCc--cCCcEEEecccccccCCccHHHHHHHHhhc-----ccccHHHHHHHHHHcCChhhhcCC---------hh
Confidence            99999742  24569999999754 567999987532210     112345667889999987665553         78


Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +|||||||||+|||||+.+|++|||||||+|||+.+...+.+++++    .|+|+|+|||+++.+..
T Consensus       467 ~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~  533 (608)
T 3j16_B          467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY  533 (608)
T ss_dssp             SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999999999888877654    48999999999987754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.96  E-value=1.5e-29  Score=250.16  Aligned_cols=169  Identities=20%  Similarity=0.185  Sum_probs=133.6

Q ss_pred             EEE-eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         81 RGR-LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        81 i~~-~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++ +||++.|+....        +++|+| +|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus        21 ~~~~~~ls~~yg~~~~--------~l~~vs-~i~~Ge~~~Lv--------G~NGaGKSTLlk~-------l----~Gl~~   72 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAF--------VLYRLP-VVKEGMVVGIV--------GPNGTGKSTAVKI-------L----AGQLI   72 (538)
T ss_dssp             ---CCCEEEECSTTCC--------EEECCC-CCCTTSEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             hhHhcCcEEEECCccc--------cccCcC-cCCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCC
Confidence            455 589999964223        899999 99999999999        999  99  9999       8    99999


Q ss_pred             cCCceee---------c-------------cCCCcEEEEcCcCCC----CCCCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400        156 LFGGTVT---------K-------------PPRGKLFYVPQRPYM----TLGTLRDQVIYPHTKEDMIQKGITDADLTEY  209 (298)
Q Consensus       156 ~~~G~i~---------~-------------~~r~~i~~v~Q~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~  209 (298)
                      |++|++.         .             ..+..+++++|....    +.+|+.+++....          ..+++.++
T Consensus        73 p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----------~~~~~~~~  142 (538)
T 1yqt_A           73 PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----------ETGKLEEV  142 (538)
T ss_dssp             CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----------SSSCHHHH
T ss_pred             CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----------HHHHHHHH
Confidence            9998841         0             012358899997532    2358888874311          12346788


Q ss_pred             HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400        210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT  286 (298)
Q Consensus       210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi  286 (298)
                      ++.+++.+..+++         +.+|||||||||+|||||+.+|++|||||||++||+.....+.+++++   .|+|||+
T Consensus       143 l~~lgl~~~~~~~---------~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~  213 (538)
T 1yqt_A          143 VKALELENVLERE---------IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV  213 (538)
T ss_dssp             HHHTTCTTTTTSB---------GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHcCCChhhhCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            9999997665553         679999999999999999999999999999999999998888887764   3899999


Q ss_pred             EecCcchhhh
Q psy11400        287 VSHRKSLWTH  296 (298)
Q Consensus       287 itH~l~~~~~  296 (298)
                      ||||++.+..
T Consensus       214 vsHd~~~~~~  223 (538)
T 1yqt_A          214 VEHDLAVLDY  223 (538)
T ss_dssp             ECSCHHHHHH
T ss_pred             EeCCHHHHHH
Confidence            9999987653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.94  E-value=6.8e-27  Score=242.81  Aligned_cols=168  Identities=20%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc-ccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD-QLW  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~-~l~  154 (298)
                      .+...|+++.|+ +..        +|+|+||+|++|++++|+        |||  ||  |+++       +    . |-.
T Consensus       435 ~L~~~~ls~~yg-~~~--------iL~~vsl~I~~Ge~v~Li--------GpNGsGKSTLLk~-------L----agG~i  486 (986)
T 2iw3_A          435 DLCNCEFSLAYG-AKI--------LLNKTQLRLKRARRYGIC--------GPNGCGKSTLMRA-------I----ANGQV  486 (986)
T ss_dssp             EEEEEEEEEEET-TEE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HHTCS
T ss_pred             eeEEeeEEEEEC-CEE--------eEecceEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence            477779999995 334        899999999999999999        999  99  9998       6    3 211


Q ss_pred             ccCCceeeccCCCcEEEEcCcC-CC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhhcCCccccccc
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRP-YM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNREKGWDTVADW  231 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~-~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~d~~~~~  231 (298)
                         .|. ......+++|++|++ .+ ...|+.+|+.+..       ... .+++.++++.+++. +..+++         
T Consensus       487 ---~g~-~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~-------~~~-~~~v~~~L~~lgL~~~~~~~~---------  545 (986)
T 2iw3_A          487 ---DGF-PTQEECRTVYVEHDIDGTHSDTSVLDFVFESG-------VGT-KEAIKDKLIEFGFTDEMIAMP---------  545 (986)
T ss_dssp             ---TTC-CCTTTSCEEETTCCCCCCCTTSBHHHHHHTTC-------SSC-HHHHHHHHHHTTCCHHHHHSB---------
T ss_pred             ---CCC-ccccceeEEEEcccccccccCCcHHHHHHHhh-------cCH-HHHHHHHHHHcCCChhhhcCC---------
Confidence               111 001122478999985 33 4569999997621       112 67788999999995 556554         


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      +.+||||||||++|||||+.+|++|||||||++||+.....+.+++++.|.|+|+|||+++.+..
T Consensus       546 ~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~  610 (986)
T 2iw3_A          546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDN  610 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            67999999999999999999999999999999999999999999998778999999999987753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.94  E-value=2.5e-27  Score=239.87  Aligned_cols=173  Identities=20%  Similarity=0.183  Sum_probs=103.4

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--ee-------------ecCccCccccccccccccccCCceee----
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LF-------------YVPQRPYMTLGTLRDQLWPLFGGTVT----  162 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~-------------~~~~~~~~~l~~~~~~l~~~~~G~i~----  162 (298)
                      +|+|+||+|++||+++|+        |||  ||  |+             +++...   +..+.+++..|+.|.+.    
T Consensus        33 ~L~~vsl~i~~Ge~~~li--------GpNGaGKSTLl~~~~~~~~~~~~~~~l~~~---~~~~l~~l~~~~~~~i~~~~~  101 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLT--------GLSGSGKSSLAFDTIYAEGQRRYVESLSAY---ARQFLGQMEKPDVDAIEGLSP  101 (670)
T ss_dssp             TCCSEEEEEETTSEEEEE--------CSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCC
T ss_pred             ceeccEEEECCCCEEEEE--------CCCCCCHHHHhcccccccccccccccchhh---hhhhhcccccCCccceecccc
Confidence            899999999999999999        999  99  64             110000   01112777777754432    


Q ss_pred             ---c-------cCCCcEEEEcCcCCC--------------------CCCCHHHHHccCCcchhh-hhcCCCH------HH
Q psy11400        163 ---K-------PPRGKLFYVPQRPYM--------------------TLGTLRDQVIYPHTKEDM-IQKGITD------AD  205 (298)
Q Consensus       163 ---~-------~~r~~i~~v~Q~~~l--------------------~~~tv~eni~~~~~~~~~-~~~~~~~------~~  205 (298)
                         .       ..+..+++|+|.+.+                    +..|+.||+.+....... .......      .+
T Consensus       102 ~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (670)
T 3ux8_A          102 AISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD  181 (670)
T ss_dssp             EEEESSCC-----CCBHHHHTTCC-------------------------CC--------------------------CHH
T ss_pred             ceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH
Confidence               1       123456666665432                    235888888764211000 0000000      11


Q ss_pred             HHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHh---
Q psy11400        206 LTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCRE---  279 (298)
Q Consensus       206 i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~---  279 (298)
                      ..++++.+++.+. .++         .+.+|||||||||+|||||+.+|+  +|||||||++||+.....+.+++++   
T Consensus       182 ~~~~l~~~gL~~~~~~~---------~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~  252 (670)
T 3ux8_A          182 RLGFLQNVGLDYLTLSR---------SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD  252 (670)
T ss_dssp             HHHHHHHTTCTTCCTTC---------BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCchhhhcC---------CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence            1234677777543 233         367999999999999999999998  9999999999999999888887654   


Q ss_pred             cCcEEEEEecCcchhhh
Q psy11400        280 VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       280 ~~~TiIiitH~l~~~~~  296 (298)
                      .|+|||+|||+++.+..
T Consensus       253 ~g~tvi~vtHd~~~~~~  269 (670)
T 3ux8_A          253 LGNTLIVVEHDEDTMLA  269 (670)
T ss_dssp             TTCEEEEECCCHHHHHH
T ss_pred             cCCEEEEEeCCHHHHhh
Confidence            48999999999987654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-26  Score=232.39  Aligned_cols=167  Identities=20%  Similarity=0.215  Sum_probs=124.7

Q ss_pred             eeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCce
Q psy11400         85 GITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGT  160 (298)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~  160 (298)
                      |++++|.....        .+++++ .+++||+++|+        |||  ||  |+++       |    +|+.+|++|+
T Consensus        82 ~~~~~Y~~~~~--------~l~~l~-~~~~Gei~~Lv--------GpNGaGKSTLLki-------L----~Gll~P~~G~  133 (608)
T 3j16_B           82 HVTHRYSANSF--------KLHRLP-TPRPGQVLGLV--------GTNGIGKSTALKI-------L----AGKQKPNLGR  133 (608)
T ss_dssp             TEEEECSTTSC--------EEECCC-CCCTTSEEEEE--------CCTTSSHHHHHHH-------H----HTSSCCCTTT
T ss_pred             CeEEEECCCce--------eecCCC-CCCCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCCCCCce
Confidence            56777754433        677777 68999999999        999  99  9999       8    9999999998


Q ss_pred             eeccC----------------------CCc--EEEEcCcCCC----C---CCCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400        161 VTKPP----------------------RGK--LFYVPQRPYM----T---LGTLRDQVIYPHTKEDMIQKGITDADLTEY  209 (298)
Q Consensus       161 i~~~~----------------------r~~--i~~v~Q~~~l----~---~~tv~eni~~~~~~~~~~~~~~~~~~i~~~  209 (298)
                      +....                      ...  ..+.+|....    .   ..++.+++...        .....+++.++
T Consensus       134 i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--------~~~~~~~~~~~  205 (608)
T 3j16_B          134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--------MEKSPEDVKRY  205 (608)
T ss_dssp             TCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--------CCSCHHHHHHH
T ss_pred             EecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--------hhhHHHHHHHH
Confidence            73110                      011  1233332210    0   01333333211        12345678899


Q ss_pred             HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400        210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT  286 (298)
Q Consensus       210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi  286 (298)
                      ++.+++.+..+++         +.+|||||||||+|||||+++|++||||||||+||+.....+.+++++   .|+|+|+
T Consensus       206 l~~~gl~~~~~~~---------~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~  276 (608)
T 3j16_B          206 IKILQLENVLKRD---------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC  276 (608)
T ss_dssp             HHHHTCTGGGGSC---------TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred             HHHcCCcchhCCC---------hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            9999998777664         689999999999999999999999999999999999999998888765   3899999


Q ss_pred             EecCcchhhh
Q psy11400        287 VSHRKSLWTH  296 (298)
Q Consensus       287 itH~l~~~~~  296 (298)
                      |||+++.+..
T Consensus       277 vtHdl~~~~~  286 (608)
T 3j16_B          277 VEHDLSVLDY  286 (608)
T ss_dssp             ECSCHHHHHH
T ss_pred             EeCCHHHHHH
Confidence            9999987654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.93  E-value=1.4e-26  Score=228.68  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=118.3

Q ss_pred             eeeeeEEE-eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee-----------cc----
Q psy11400        105 FFDYMFGV-RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT-----------KP----  164 (298)
Q Consensus       105 l~~isl~i-~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~-----------~~----  164 (298)
                      ++-..|.+ ++||+++|+        |||  ||  |+++       +    +|+++|++|++.           ..    
T Consensus        14 f~l~~l~~~~~Gei~gLi--------GpNGaGKSTLlki-------L----~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i   74 (538)
T 3ozx_A           14 FKLFGLPTPKNNTILGVL--------GKNGVGKTTVLKI-------L----AGEIIPNFGDPNSKVGKDEVLKRFRGKEI   74 (538)
T ss_dssp             CEEECCCCCCTTEEEEEE--------CCTTSSHHHHHHH-------H----TTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred             eeecCCCCCCCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCCCCCCCccccccchhhHHhhcCCeeH
Confidence            33344444 599999999        999  99  9999       8    999999999872           10    


Q ss_pred             ---------CCCcEEEEcCc----CCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccccc
Q psy11400        165 ---------PRGKLFYVPQR----PYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADW  231 (298)
Q Consensus       165 ---------~r~~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~  231 (298)
                               ....+...+|.    +.++.+++.+++....          ..+++.++++.+++..+.+++         
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~l~~l~l~~~~~~~---------  135 (538)
T 3ozx_A           75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----------ERGKKDEVKELLNMTNLWNKD---------  135 (538)
T ss_dssp             HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC----------CSSCHHHHHHHTTCGGGTTSB---------
T ss_pred             HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch----------hHHHHHHHHHHcCCchhhcCC---------
Confidence                     11224444443    3445568877654211          123467888999998766553         


Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      +.+|||||||||+|||||+.+|++||||||||+||+.....+.+++++.  |+|||+||||++.+..
T Consensus       136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~  202 (538)
T 3ozx_A          136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY  202 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence            6799999999999999999999999999999999999999988887753  8999999999987653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=2.4e-24  Score=218.07  Aligned_cols=100  Identities=29%  Similarity=0.341  Sum_probs=76.6

Q ss_pred             CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEE
Q psy11400        181 GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFA  256 (298)
Q Consensus       181 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~il  256 (298)
                      .|+.||+.+....       ....+..+.+..+++.+. .++         .+.+|||||||||+|||||+++|   ++|
T Consensus       505 ltv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSgG~~qrv~iAraL~~~p~~p~ll  568 (670)
T 3ux8_A          505 MTVEDALDFFASI-------PKIKRKLETLYDVGLGYMKLGQ---------PATTLSGGEAQRVKLAAELHRRSNGRTLY  568 (670)
T ss_dssp             SBHHHHHHHTTTC-------HHHHHHHHHHHHTTCTTSBTTC---------CGGGCCHHHHHHHHHHHHHHSCCCSCEEE
T ss_pred             CCHHHHHHHHHHh-------hhHHHHHHHHHHcCCchhhccC---------CchhCCHHHHHHHHHHHHHhhCCCCCcEE
Confidence            4677777654311       112345667777777532 222         46899999999999999999887   499


Q ss_pred             EEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        257 ILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       257 iLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      ||||||+|||+.+...+.+++++   .|+|||+|||+++.+..
T Consensus       569 llDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~  611 (670)
T 3ux8_A          569 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT  611 (670)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh
Confidence            99999999999999988887654   48999999999988754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=5e-23  Score=213.31  Aligned_cols=86  Identities=27%  Similarity=0.369  Sum_probs=70.8

Q ss_pred             HHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh-
Q psy11400        204 ADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE-  279 (298)
Q Consensus       204 ~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~-  279 (298)
                      .+..++++.+++.+..        ....+.+|||||||||+|||||+++|   ++|||||||+|||+..++.+++.+++ 
T Consensus       783 ~~~~~~L~~vGL~~~~--------lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L  854 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVK--------LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL  854 (916)
T ss_dssp             HHHHHHHHHTTGGGSB--------TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhh--------ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            3456778888875421        12246899999999999999999876   79999999999999999999888764 


Q ss_pred             --cCcEEEEEecCcchhhhc
Q psy11400        280 --VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       280 --~~~TiIiitH~l~~~~~~  297 (298)
                        .|.|||+|||++++++..
T Consensus       855 ~~~G~TVIvI~HdL~~i~~A  874 (916)
T 3pih_A          855 VDRGNTVIVIEHNLDVIKNA  874 (916)
T ss_dssp             HHTTCEEEEECCCHHHHTTC
T ss_pred             HhcCCEEEEEeCCHHHHHhC
Confidence              489999999999988753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.87  E-value=3.8e-22  Score=205.22  Aligned_cols=84  Identities=26%  Similarity=0.334  Sum_probs=70.1

Q ss_pred             HHHHHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcC---CCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        204 ADLTEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR---PQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       204 ~~i~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~---P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      .++.++++.++|.+. .++         .+.+|||||||||+|||+|+++   |+++||||||+|||+.....+++++++
T Consensus       708 ~~~~~~L~~~gL~~~~l~~---------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~  778 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQ---------PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK  778 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTC---------CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccC---------CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            345677888887652 233         3679999999999999999996   799999999999999999998887654


Q ss_pred             ---cCcEEEEEecCcchhhh
Q psy11400        280 ---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       280 ---~~~TiIiitH~l~~~~~  296 (298)
                         .|.|||+|||+++.++.
T Consensus       779 L~~~G~tVIvisHdl~~i~~  798 (842)
T 2vf7_A          779 LVDAGNTVIAVEHKMQVVAA  798 (842)
T ss_dssp             HHHTTCEEEEECCCHHHHTT
T ss_pred             HHhCCCEEEEEcCCHHHHHh
Confidence               48999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.9e-25  Score=212.83  Aligned_cols=152  Identities=12%  Similarity=0.057  Sum_probs=118.6

Q ss_pred             eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc-e-eec--cCCCcEEEEcCcCC
Q psy11400        106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG-T-VTK--PPRGKLFYVPQRPY  177 (298)
Q Consensus       106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G-~-i~~--~~r~~i~~v~Q~~~  177 (298)
                      .++||++++|++++|+        |||  ||  |+|+       |    +|+++|++| + |..  ..++.++|+||++.
T Consensus       129 ~~vsl~i~~Ge~v~Iv--------GpnGsGKSTLlr~-------L----~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~  189 (460)
T 2npi_A          129 EKIRMSNFEGPRVVIV--------GGSQTGKTSLSRT-------L----CSYALKFNAYQPLYINLDPQQPIFTVPGCIS  189 (460)
T ss_dssp             HHHHHHSSSCCCEEEE--------ESTTSSHHHHHHH-------H----HHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred             hcCceEeCCCCEEEEE--------CCCCCCHHHHHHH-------H----hCcccccCCceeEEEcCCccCCeeeeccchh
Confidence            3688999999999999        999  99  9999       8    999999999 8 754  34678999999984


Q ss_pred             C----CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH--Hhc
Q psy11400        178 M----TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL--FYH  251 (298)
Q Consensus       178 l----~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa--L~~  251 (298)
                      +    ...|+++|+ ++.....   .....+.+.++++.+++.+..          + +.+|||||||||++|||  |+.
T Consensus       190 l~~~~~~~tv~eni-~~~~~~~---~~~~~~~~~~ll~~~gl~~~~----------~-~~~LSgGq~qrlalAra~rL~~  254 (460)
T 2npi_A          190 ATPISDILDAQLPT-WGQSLTS---GATLLHNKQPMVKNFGLERIN----------E-NKDLYLECISQLGQVVGQRLHL  254 (460)
T ss_dssp             EEECCSCCCTTCTT-CSCBCBS---SCCSSCCBCCEECCCCSSSGG----------G-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccchhhhh-ccccccc---CcchHHHHHHHHHHhCCCccc----------c-hhhhhHHHHHHHHHHHHHHhcc
Confidence            3    235899888 6542100   001112233445555554332          1 56899999999999999  999


Q ss_pred             CCCE----EEEec-cccCCCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400        252 RPQF----AILDE-CTSAVSVDVEGSMYEYCREVGITLFTVSHRKS  292 (298)
Q Consensus       252 ~P~i----liLDE-PTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~  292 (298)
                      +|++    +|||| ||++||+. .+.+.+++++.++|+|+|+|+.+
T Consensus       255 ~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~  299 (460)
T 2npi_A          255 DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET  299 (460)
T ss_dssp             CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence            9999    99999 99999999 77788888888999999999987

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.86  E-value=4.5e-22  Score=205.65  Aligned_cols=83  Identities=33%  Similarity=0.404  Sum_probs=69.4

Q ss_pred             HHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC---CEEEEeccccCCCHHHHHHHHHHHHh-
Q psy11400        205 DLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP---QFAILDECTSAVSVDVEGSMYEYCRE-  279 (298)
Q Consensus       205 ~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P---~iliLDEPTs~LD~~~~~~i~~~l~~-  279 (298)
                      +..++++.++|.+ ..++         .+.+|||||||||+|||+|+++|   +++||||||+|||+.....+++++++ 
T Consensus       824 ~~~~~L~~~gL~~~~l~~---------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L  894 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQ---------PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL  894 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTC---------CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccC---------chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            3456778888765 3333         36799999999999999999875   99999999999999999998887754 


Q ss_pred             --cCcEEEEEecCcchhhh
Q psy11400        280 --VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       280 --~~~TiIiitH~l~~~~~  296 (298)
                        .|.|||+|||+++.++.
T Consensus       895 ~~~G~TVIvisHdl~~i~~  913 (972)
T 2r6f_A          895 VDNGDTVLVIEHNLDVIKT  913 (972)
T ss_dssp             HHTTCEEEEECCCHHHHTT
T ss_pred             HhCCCEEEEEcCCHHHHHh
Confidence              48999999999987754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.86  E-value=1.9e-25  Score=205.93  Aligned_cols=185  Identities=19%  Similarity=0.187  Sum_probs=142.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhccccCCCCCCCCceeecCCcEEEeeeeEecCCCCCCC
Q psy11400         18 AEAIGRLVLAGREMTRLAGFTARMTEIIRVLKDLNEGVYVRTMVTQNGVDSLSEGIFIYRNNLRGRLGITLGLRSGGLGF   97 (298)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~   97 (298)
                      ..++..+...+..++++..+..|+.++++...+.....              .  ......+.|+++||+|.|+  ..  
T Consensus        55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--------------~--~~~~~~~~i~~~~vs~~y~--~~--  114 (305)
T 2v9p_A           55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--------------G--SWKSILTFFNYQNIELITF--IN--  114 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--------------C--CTHHHHHHHHHTTCCHHHH--HH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--------------C--cccccCCeEEEEEEEEEcC--hh--
Confidence            47788888888999999999999999998765432100              0  0001123588999999996  33  


Q ss_pred             CCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEc
Q psy11400         98 DSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVP  173 (298)
Q Consensus        98 ~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~  173 (298)
                            +|+++||+|++|++++|+        |||  ||  |+++       |    .|++   +|+|       ++|++
T Consensus       115 ------vL~~vsl~i~~Ge~vaIv--------GpsGsGKSTLl~l-------L----~gl~---~G~I-------~~~v~  159 (305)
T 2v9p_A          115 ------ALKLWLKGIPKKNCLAFI--------GPPNTGKSMLCNS-------L----IHFL---GGSV-------LSFAN  159 (305)
T ss_dssp             ------HHHHHHHTCTTCSEEEEE--------CSSSSSHHHHHHH-------H----HHHH---TCEE-------ECGGG
T ss_pred             ------hhccceEEecCCCEEEEE--------CCCCCcHHHHHHH-------H----hhhc---CceE-------EEEec
Confidence                  999999999999999999        999  99  9999       8    8887   8888       56899


Q ss_pred             CcCCCCCCCHHH-HHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400        174 QRPYMTLGTLRD-QVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR  252 (298)
Q Consensus       174 Q~~~l~~~tv~e-ni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~  252 (298)
                      |++.+|.+|+++ |+.+...        .++ .+.+.++.+ +      +.|++     +..||||||||   ||||+++
T Consensus       160 q~~~lf~~ti~~~ni~~~~~--------~~~-~~~~~i~~~-L------~~gld-----g~~LSgGqkQR---ARAll~~  215 (305)
T 2v9p_A          160 HKSHFWLASLADTRAALVDD--------ATH-ACWRYFDTY-L------RNALD-----GYPVSIDRKHK---AAVQIKA  215 (305)
T ss_dssp             TTSGGGGGGGTTCSCEEEEE--------ECH-HHHHHHHHT-T------TGGGG-----TCCEECCCSSC---CCCEECC
T ss_pred             CccccccccHHHHhhccCcc--------ccH-HHHHHHHHH-h------HccCC-----ccCcCHHHHHH---HHHHhCC
Confidence            999999999997 8887421        122 445555543 2      22333     67899999999   9999999


Q ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhhh
Q psy11400        253 PQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       253 P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~~  296 (298)
                      |++||    ||+||+.++..+..           +|||++.+++
T Consensus       216 p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~~~  244 (305)
T 2v9p_A          216 PPLLV----TSNIDVQAEDRYLY-----------LHSRVQTFRF  244 (305)
T ss_dssp             CCEEE----EESSCSTTCGGGGG-----------GTTTEEEEEC
T ss_pred             CCEEE----ECCCCHHHHHHHHH-----------HhCCHHHHHh
Confidence            99999    99999998887753           2788776554

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.85  E-value=4.8e-24  Score=186.53  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------cCCCcEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------PPRGKLFY  171 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------~~r~~i~~  171 (298)
                      +|+|+    ++|++++|+        |||  ||  |+++       +    +|+ +|++|+|..        ..+++++|
T Consensus        15 ~l~~i----~~Ge~~~li--------G~nGsGKSTLl~~-------l----~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~   70 (208)
T 3b85_A           15 YVDAI----DTNTIVFGL--------GPAGSGKTYLAMA-------K----AVQ-ALQSKQVSRIILTRPAVEAGEKLGF   70 (208)
T ss_dssp             HHHHH----HHCSEEEEE--------CCTTSSTTHHHHH-------H----HHH-HHHTTSCSEEEEEECSCCTTCCCCS
T ss_pred             HHHhc----cCCCEEEEE--------CCCCCCHHHHHHH-------H----hcC-CCcCCeeeeEEecCCchhhhcceEE
Confidence            88885    899999999        999  99  9999       8    999 999999742        23567999


Q ss_pred             EcCcCCCCCCCHHHHH-ccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHh
Q psy11400        172 VPQRPYMTLGTLRDQV-IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY  250 (298)
Q Consensus       172 v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~  250 (298)
                      +||++       +||+ .+..............+.+.++++.                       +.|||||++|||||+
T Consensus        71 v~q~~-------~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------glGq~qrv~lAraL~  120 (208)
T 3b85_A           71 LPGTL-------NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-----------------------GIVEVAPLAYMRGRT  120 (208)
T ss_dssp             SCC-------------CTTTHHHHHHHTTTSCTTHHHHHHHT-----------------------TSEEEEEGGGGTTCC
T ss_pred             ecCCH-------HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-----------------------CCchHHHHHHHHHHh
Confidence            99987       5666 3321000000000111223333221                       129999999999999


Q ss_pred             cCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhh
Q psy11400        251 HRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWT  295 (298)
Q Consensus       251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~  295 (298)
                      .+|++|||||||++    +...+.+++++  .|+|+| +||+++.+.
T Consensus       121 ~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~  162 (208)
T 3b85_A          121 LNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD  162 (208)
T ss_dssp             BCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred             cCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence            99999999999999    66677777765  378999 999998764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.84  E-value=4.9e-21  Score=182.43  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             CChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        235 LSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       235 LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      |||||||||+|||+|+.+|  ++|||||||++||+.....+.+.+++.  ++|||+|||+++++..
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~  361 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR  361 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence            7999999999999999999  999999999999999999999998874  7999999999987653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.83  E-value=2.4e-22  Score=169.86  Aligned_cols=66  Identities=11%  Similarity=0.063  Sum_probs=56.2

Q ss_pred             cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHH----------------HHHHHHHHH---HhcCcEEEEEecCc
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----------------VEGSMYEYC---REVGITLFTVSHRK  291 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~----------------~~~~i~~~l---~~~~~TiIiitH~l  291 (298)
                      .....|+|||||++||||++.+|++++|||||++||+.                ....+.+.+   ++.|.|+|+|||++
T Consensus        80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~  159 (171)
T 4gp7_A           80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP  159 (171)
T ss_dssp             SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence            34567999999999999999999999999999999998                446677663   33499999999999


Q ss_pred             chhhh
Q psy11400        292 SLWTH  296 (298)
Q Consensus       292 ~~~~~  296 (298)
                      +.+..
T Consensus       160 ~~~~~  164 (171)
T 4gp7_A          160 EEVEE  164 (171)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            87754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.75  E-value=1.9e-18  Score=160.06  Aligned_cols=66  Identities=27%  Similarity=0.369  Sum_probs=58.5

Q ss_pred             cCCCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      .+..||+|||||++|||||+    .+|+++||||||++||+...+.+.+.+++.  +.|+|+|||+.++...
T Consensus       216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~  287 (322)
T 1e69_A          216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA  287 (322)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG
T ss_pred             chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhh
Confidence            45789999999999999997    689999999999999999999999888764  7899999999876543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.75  E-value=2.3e-21  Score=185.44  Aligned_cols=150  Identities=12%  Similarity=0.011  Sum_probs=115.6

Q ss_pred             ceeeeeEEEeCCc--------------------EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCc
Q psy11400        104 SFFDYMFGVRGAL--------------------NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGG  159 (298)
Q Consensus       104 ~l~~isl~i~~g~--------------------~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G  159 (298)
                      +++++||++++|+                    +++|+        |+|  ||  |+++       +    .|+.+|++|
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valv--------G~nGaGKSTLln~-------L----~Gl~~p~~G   98 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVT--------GETGSGKSSFINT-------L----RGIGNEEEG   98 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEE--------ECTTSSHHHHHHH-------H----HTCCTTSTT
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEE--------CCCCCcHHHHHHH-------H----hCCCCccCc
Confidence            8999999999999                    99999        999  99  9999       8    999999999


Q ss_pred             eeeccCC--CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCCh
Q psy11400        160 TVTKPPR--GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG  237 (298)
Q Consensus       160 ~i~~~~r--~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSg  237 (298)
                      ++.....  .+.++++|++..+..|+.|++.++.       .   ...+.++++.+++.+...          ... ||+
T Consensus        99 sI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~-------~---~~~~~~~L~~~~L~~~~~----------~~~-lS~  157 (413)
T 1tq4_A           99 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS-------T---NFPPDTYLEKMKFYEYDF----------FII-ISA  157 (413)
T ss_dssp             SCCCCC----CCCEEEECSSCTTEEEEECCCGGG-------S---SCCHHHHHHHTTGGGCSE----------EEE-EES
T ss_pred             eEEECCeecceeEEeccccccCCeeehHhhcccc-------h---HHHHHHHHHHcCCCccCC----------eEE-eCC
Confidence            9864321  1137899997655668888765532       1   123677888888754211          122 999


Q ss_pred             h--HHHHHHHHHHHhc----------CCCEEEEeccccCCCHHHHHHHHHHHHh--------c----CcEEEEEecCcch
Q psy11400        238 G--EKQRVAMARLFYH----------RPQFAILDECTSAVSVDVEGSMYEYCRE--------V----GITLFTVSHRKSL  293 (298)
Q Consensus       238 G--qkQRlaiARaL~~----------~P~iliLDEPTs~LD~~~~~~i~~~l~~--------~----~~TiIiitH~l~~  293 (298)
                      |  ||||++|||||.+          +|++++|||||++||+..+..+.+.+++        .    ..+++++||.++.
T Consensus       158 G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~  237 (413)
T 1tq4_A          158 TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH  237 (413)
T ss_dssp             SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred             CCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence            9  9999999999999          9999999999999999877666554432        1    2578899998764

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.73  E-value=9.2e-18  Score=139.03  Aligned_cols=65  Identities=23%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             cCCCCChhHHHHHHHH------HHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhh
Q psy11400        231 WIDVLSGGEKQRVAMA------RLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWT  295 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiA------RaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~  295 (298)
                      .+.+||||||||++||      |||+.+|+++||||||++||+.....+.+.+++   .+.|+|+|||+.....
T Consensus        54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~  127 (148)
T 1f2t_B           54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD  127 (148)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG
T ss_pred             ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH
Confidence            5689999999999876      999999999999999999999999999988765   3789999999986544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.70  E-value=1.8e-18  Score=147.40  Aligned_cols=64  Identities=11%  Similarity=0.045  Sum_probs=57.3

Q ss_pred             cCCCCChhHHHHHHHHHH-----HhcCCCEEEEec--cccCCCHHHHHHHHHHHHhcCcEEEEEec---Ccchh
Q psy11400        231 WIDVLSGGEKQRVAMARL-----FYHRPQFAILDE--CTSAVSVDVEGSMYEYCREVGITLFTVSH---RKSLW  294 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARa-----L~~~P~iliLDE--PTs~LD~~~~~~i~~~l~~~~~TiIiitH---~l~~~  294 (298)
                      ++.+||||||||++||||     ++.+|+++||||  ||++||+...+.+.+.+++.+.|+|+++|   +...+
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~  146 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV  146 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHH
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHH
Confidence            467899999999999996     999999999999  99999999999999999887788999986   55544

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.68  E-value=4.9e-20  Score=170.46  Aligned_cols=162  Identities=12%  Similarity=-0.003  Sum_probs=118.1

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEE-----------------------EeCCcEEEEeccCCcccCCCC--
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFG-----------------------VRGALNLLWPLFGGTVTKPPR--  132 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~-----------------------i~~g~~~~i~~~~~~~~~G~s--  132 (298)
                      ++.|+++||++.|.   +        +++++++.                       +++|++++|+        |||  
T Consensus        41 ~~~i~~~~v~~~y~---p--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~--------G~sGs  101 (312)
T 3aez_A           41 GEQIDLLEVEEVYL---P--------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVA--------GSVAV  101 (312)
T ss_dssp             TCCCCHHHHHHTHH---H--------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEE--------CCTTS
T ss_pred             CCeEEeeehhhhhh---h--------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEE--------CCCCc
Confidence            45689999999993   2        66766664                       8999999999        999  


Q ss_pred             cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400        133 GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYL  210 (298)
Q Consensus       133 GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l  210 (298)
                      ||  |+++       |    .|+++|+.|.      .++++|+|+++++..|+++|+.+.... .. ......+.+.+.+
T Consensus       102 GKSTL~~~-------L----~gll~~~~G~------~~v~~v~qd~~~~~~t~~e~~~~~~~~-g~-~~~~d~~~~~~~L  162 (312)
T 3aez_A          102 GKSTTARV-------L----QALLARWDHH------PRVDLVTTDGFLYPNAELQRRNLMHRK-GF-PESYNRRALMRFV  162 (312)
T ss_dssp             CHHHHHHH-------H----HHHHHTSTTC------CCEEEEEGGGGBCCHHHHHHTTCTTCT-TS-GGGBCHHHHHHHH
T ss_pred             hHHHHHHH-------H----HhhccccCCC------CeEEEEecCccCCcccHHHHHHHHHhc-CC-ChHHHHHHHHHHH
Confidence            99  9999       8    9999887764      469999999988766999998753210 10 1123446677777


Q ss_pred             HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh-cCcEEEEEec
Q psy11400        211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE-VGITLFTVSH  289 (298)
Q Consensus       211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~-~~~TiIiitH  289 (298)
                      +.++ ....+.         .+..|||||+||+++|||++.+|+++|||||++.+|+..     ..+.+ .+. .|+|+|
T Consensus       163 ~~l~-~~~~~~---------~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~-~I~V~a  226 (312)
T 3aez_A          163 TSVK-SGSDYA---------CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDF-SLYVDA  226 (312)
T ss_dssp             HHHH-TTCSCE---------EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSE-EEEEEE
T ss_pred             HHhC-CCcccC---------CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCc-EEEEEC
Confidence            7765 221111         245899999999999999999999999999999997421     01122 243 466666


Q ss_pred             Ccch
Q psy11400        290 RKSL  293 (298)
Q Consensus       290 ~l~~  293 (298)
                      +.+.
T Consensus       227 ~~~~  230 (312)
T 3aez_A          227 RIED  230 (312)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.65  E-value=1.6e-16  Score=149.80  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             cCCCCChhHHHHHHHHHHHh------cCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFY------HRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~------~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      .+.+||||||||++|||||+      .+|+++||||||++||+.....+.+.+++   .|+|||+|||+++.+..
T Consensus       276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~  350 (365)
T 3qf7_A          276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA  350 (365)
T ss_dssp             EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT
T ss_pred             CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence            56789999999999999999      79999999999999999999999988775   48999999999987554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.64  E-value=1.1e-19  Score=159.44  Aligned_cols=154  Identities=11%  Similarity=0.055  Sum_probs=96.2

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-----------cCCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-----------PPRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-----------~~r~~  168 (298)
                      .|+|+||+|++|++++|+        |||  ||  |+++       +    .|++ |  |++..           ..+..
T Consensus        12 ~l~~isl~i~~G~~~~lv--------GpsGsGKSTLl~~-------L----~g~~-p--G~i~~g~~~~~~~~~~~~~~~   69 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVIC--------GPSGVGKGTLIKK-------L----LNEF-P--NYFYFSVSCTTRKKREKEKEG   69 (218)
T ss_dssp             ----------CCCCEEEE--------CSTTSSHHHHHHH-------H----HHHS-T--TTEEECCCEECSCCCSSCCBT
T ss_pred             cccCCceecCCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhC-C--CcEEEeecccCCCCCcccccC
Confidence            699999999999999999        999  99  9998       7    7777 4  66542           12356


Q ss_pred             EEEEcCcCCCCCC-C-HHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHH-
Q psy11400        169 LFYVPQRPYMTLG-T-LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAM-  245 (298)
Q Consensus       169 i~~v~Q~~~l~~~-t-v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlai-  245 (298)
                      ++|+||++.+|.. + ..+++.++.. ... ..+...+.+.++++...+. ++            ..+|||||+||++| 
T Consensus        70 i~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~g~~~~~i~~~l~~~~~~-il------------~~~lsggq~qR~~i~  134 (218)
T 1z6g_A           70 VDYYFIDKTIFEDKLKNEDFLEYDNY-ANN-FYGTLKSEYDKAKEQNKIC-LF------------EMNINGVKQLKKSTH  134 (218)
T ss_dssp             TTBEECCHHHHHHHHHTTCEEEEEEE-TTE-EEEEEHHHHHHHHHTTCEE-EE------------EECHHHHHHHTTCSS
T ss_pred             CeEEECCHHHHHHhhhccchhhhhhc-ccc-cCCCcHHHHHHHHhCCCcE-EE------------EecHHHHHHHHHHhc
Confidence            8999998854421 1 0111111100 000 0112244566666543221 11            14799999999999 


Q ss_pred             ----HHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----------cCcEEEEEecCcchh
Q psy11400        246 ----ARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----------VGITLFTVSHRKSLW  294 (298)
Q Consensus       246 ----ARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----------~~~TiIiitH~l~~~  294 (298)
                          ||+|+.+|++++|||||+++|..++..+.+.+.+          ...+.|+++|+++.+
T Consensus       135 ~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea  197 (218)
T 1z6g_A          135 IKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT  197 (218)
T ss_dssp             CCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred             CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHH
Confidence                8999999999999999999998777777665432          357889999987643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.63  E-value=3.3e-16  Score=162.41  Aligned_cols=81  Identities=28%  Similarity=0.397  Sum_probs=67.5

Q ss_pred             HHHHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHh---c
Q psy11400        207 TEYLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCRE---V  280 (298)
Q Consensus       207 ~~~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~---~  280 (298)
                      .+.+..+++.++ .++         .+.+|||||||||+|||||+++|+  +|||||||++||+.....+.+.+++   .
T Consensus       445 ~~~L~~vgL~~l~l~r---------~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~  515 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSR---------SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL  515 (916)
T ss_dssp             HHHHHTTTCTTCBTTS---------BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred             HHHHHHcCCccccccC---------CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence            345666676543 233         467999999999999999999887  9999999999999999999888775   4


Q ss_pred             CcEEEEEecCcchhhh
Q psy11400        281 GITLFTVSHRKSLWTH  296 (298)
Q Consensus       281 ~~TiIiitH~l~~~~~  296 (298)
                      |.|||+||||++.+..
T Consensus       516 G~TvivVtHd~~~~~~  531 (916)
T 3pih_A          516 GNTVIVVEHDEEVIRN  531 (916)
T ss_dssp             TCEEEEECCCHHHHHT
T ss_pred             CCEEEEEeCCHHHHHh
Confidence            8999999999987754

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.63  E-value=6.7e-16  Score=131.02  Aligned_cols=67  Identities=21%  Similarity=0.311  Sum_probs=58.6

Q ss_pred             cCCCCChhHHHHHHHHHHHhc----CCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        231 WIDVLSGGEKQRVAMARLFYH----RPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~----~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                      +...||||||||++|||+|+.    .|+++||||||++||+.....+.+++++  .+.++|+|||+..+..+.
T Consensus        61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~a  133 (173)
T 3kta_B           61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANA  133 (173)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTC
T ss_pred             ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhC
Confidence            467899999999999999974    4699999999999999999999998876  367999999998776544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.63  E-value=7.5e-18  Score=155.09  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=102.7

Q ss_pred             eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC---------------
Q psy11400        105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP---------------  165 (298)
Q Consensus       105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~---------------  165 (298)
                      +..+||++++|++++++        |||  ||  +++.       +    +|+++|++|+|....               
T Consensus        90 ~~~l~~~~~~g~vi~lv--------G~nGsGKTTll~~-------L----ag~l~~~~g~V~l~g~d~~r~~a~~ql~~~  150 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIV--------GVNGGGKTTSLGK-------L----AHRLKNEGTKVLMAAGDTFRAAASDQLEIW  150 (302)
T ss_dssp             CCSCCCCSSSCEEEEEE--------CCTTSCHHHHHHH-------H----HHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred             ccccccccCCCcEEEEE--------cCCCCCHHHHHHH-------H----HHHHHHcCCeEEEEeecccchhHHHHHHHH
Confidence            45689999999999999        999  99  8888       7    999999999974210               


Q ss_pred             --CCcEEEEcCcCC-CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHH
Q psy11400        166 --RGKLFYVPQRPY-MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQ  241 (298)
Q Consensus       166 --r~~i~~v~Q~~~-l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQ  241 (298)
                        +..++|++|++. +++ .++++|+.++..      ....    ..+++.+++.+..+         .++.+||   ||
T Consensus       151 ~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~------~~~d----~~lldt~gl~~~~~---------~~~~eLS---kq  208 (302)
T 3b9q_A          151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKE------EGYD----VVLCDTSGRLHTNY---------SLMEELI---AC  208 (302)
T ss_dssp             HHHHTCEEECCC--CCCHHHHHHHHHHHHHH------TTCS----EEEECCCCCSSCCH---------HHHHHHH---HH
T ss_pred             HHhcCceEEEecCCccCHHHHHHHHHHHHHH------cCCc----chHHhcCCCCcchh---------HHHHHHH---HH
Confidence              235999999987 554 589999876321      0110    01223334432222         2356799   99


Q ss_pred             HHHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400        242 RVAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR  290 (298)
Q Consensus       242 RlaiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~  290 (298)
                      |++||||++.+|+  +|+|| ||+|+|+...  +.++.++.+.|+|++||-
T Consensus       209 r~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThl  256 (302)
T 3b9q_A          209 KKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKL  256 (302)
T ss_dssp             HHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECC
T ss_pred             HHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCC
Confidence            9999999999999  99999 9999998754  334434568999999993

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.60  E-value=1.4e-15  Score=155.47  Aligned_cols=141  Identities=14%  Similarity=-0.036  Sum_probs=101.5

Q ss_pred             CCcEEEeeeeEecCC---CCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccc
Q psy11400         78 NNLRGRLGITLGLRS---GGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLR  150 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~---~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~  150 (298)
                      ++.+.+++.  .+|-   +..       .+++|+||+   |++++|+        |||  ||  ++|+       +    
T Consensus       548 ~~~i~i~~~--rHP~le~~~~-------~vl~disl~---g~i~~I~--------GpNGsGKSTlLr~-------i----  596 (765)
T 1ewq_A          548 GDRLQIRAG--RHPVVERRTE-------FVPNDLEMA---HELVLIT--------GPNMAGKSTFLRQ-------T----  596 (765)
T ss_dssp             SSSEEEEEE--CCTTGGGTSC-------CCCEEEEES---SCEEEEE--------SCSSSSHHHHHHH-------H----
T ss_pred             CCcEEEEEe--ECceEccCCc-------eEeeeccCC---CcEEEEE--------CCCCCChHHHHHH-------H----
Confidence            456788776  3332   222       289999999   9999999        999  99  9998       7    


Q ss_pred             ccccc-cCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccc
Q psy11400        151 DQLWP-LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA  229 (298)
Q Consensus       151 ~~l~~-~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~  229 (298)
                      +|+.. +..|.+....+..+++++|-  +...++.||+                                          
T Consensus       597 agl~~~~~~G~~vpa~~~~i~~v~~i--~~~~~~~d~l------------------------------------------  632 (765)
T 1ewq_A          597 ALIALLAQVGSFVPAEEAHLPLFDGI--YTRIGASDDL------------------------------------------  632 (765)
T ss_dssp             HHHHHHHTTTCCBSSSEEEECCCSEE--EEECCC----------------------------------------------
T ss_pred             HhhhhhcccCceeehhccceeeHHHh--hccCCHHHHH------------------------------------------
Confidence            77753 56776543223346665551  0001111111                                          


Q ss_pred             ccCCCCChhHHHHHHHHHHH--hcCCCEEEEecc---ccCCCHHHH-HHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        230 DWIDVLSGGEKQRVAMARLF--YHRPQFAILDEC---TSAVSVDVE-GSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       230 ~~~~~LSgGqkQRlaiARaL--~~~P~iliLDEP---Ts~LD~~~~-~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                        ...+|+|++|++.+|+++  +.+|+++|||||   |++||.... ..+.+.+.+.|+|+|++||+.++..
T Consensus       633 --~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          633 --AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  702 (765)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             --HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence              124789999999999999  999999999999   999998875 4688887777999999999987654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.59  E-value=8e-17  Score=149.95  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=83.2

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT  179 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~  179 (298)
                      +++++||.+++|+.++|+        |||  ||  |+++       +    .|+++|++|.|.......+          
T Consensus       160 ~l~~l~~~i~~g~~v~i~--------G~~GsGKTTll~~-------l----~g~~~~~~g~i~i~~~~e~----------  210 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVC--------GGTGSGKTTYIKS-------I----MEFIPKEERIISIEDTEEI----------  210 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEE--------ESTTSCHHHHHHH-------G----GGGSCTTSCEEEEESSCCC----------
T ss_pred             HHhhhhhhccCCCEEEEE--------CCCCCCHHHHHHH-------H----hCCCcCCCcEEEECCeecc----------
Confidence            789999999999999999        999  99  9999       8    9999999998864321100          


Q ss_pred             CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q psy11400        180 LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILD  259 (298)
Q Consensus       180 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLD  259 (298)
                              ..+..     ...            +++                ...  |||+||++|||||..+|++++||
T Consensus       211 --------~~~~~-----~~~------------i~~----------------~~g--gg~~~r~~la~aL~~~p~ilild  247 (330)
T 2pt7_A          211 --------VFKHH-----KNY------------TQL----------------FFG--GNITSADCLKSCLRMRPDRIILG  247 (330)
T ss_dssp             --------CCSSC-----SSE------------EEE----------------ECB--TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred             --------ccccc-----hhE------------EEE----------------EeC--CChhHHHHHHHHhhhCCCEEEEc
Confidence                    00000     000            000                001  89999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        260 ECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       260 EPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      |||+.   +..+ +++.+...+.|+|+++|+.+...
T Consensus       248 E~~~~---e~~~-~l~~~~~g~~tvi~t~H~~~~~~  279 (330)
T 2pt7_A          248 ELRSS---EAYD-FYNVLCSGHKGTLTTLHAGSSEE  279 (330)
T ss_dssp             CCCST---HHHH-HHHHHHTTCCCEEEEEECSSHHH
T ss_pred             CCChH---HHHH-HHHHHhcCCCEEEEEEcccHHHH
Confidence            99982   3333 23333332458999999998654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.59  E-value=1e-15  Score=160.84  Aligned_cols=147  Identities=17%  Similarity=0.093  Sum_probs=98.0

Q ss_pred             CcEEEee-----eeEecCCCCCCCCCCcccceeeeeEEEeC-------CcEEEEeccCCcccCCCC--cc--eeecCccC
Q psy11400         79 NLRGRLG-----ITLGLRSGGLGFDSRWGRSFFDYMFGVRG-------ALNLLWPLFGGTVTKPPR--GK--LFYVPQRP  142 (298)
Q Consensus        79 ~~i~~~~-----v~~~~~~~~~~~~~~~~~~l~~isl~i~~-------g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~  142 (298)
                      ..++++|     |++.|+.+..        +++|++|++++       |++++|+        |||  ||  ++|.    
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~~~--------v~ndi~l~~~~~~~~~~~g~i~~It--------GpNgsGKSTlLr~----  808 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGDDF--------IPNDILIGCEEEEQENGKAYCVLVT--------GPNMGGKSTLMRQ----  808 (1022)
T ss_dssp             CCEEEEEECCCC------CCCC--------CCEEEEESCCCSCC---CCCEEEEE--------CCTTSSHHHHHHH----
T ss_pred             ceEEEEeccccEEEEEecCCce--------EeeeeeeccccccccCCCCcEEEEE--------CCCCCChHHHHHH----
Confidence            4699999     9988854444        99999999987       9999999        999  99  8887    


Q ss_pred             ccccccccccccccCCceeeccCCCcEE-EEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        143 YMTLGTLRDQLWPLFGGTVTKPPRGKLF-YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       143 ~~~l~~~~~~l~~~~~G~i~~~~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                         +     |+..+         ..++| ||||++.  ..++.|+|...                      +++.+.+..
T Consensus       809 ---i-----Gl~~~---------~aqiG~~Vpq~~~--~l~v~d~I~~r----------------------ig~~d~~~~  847 (1022)
T 2o8b_B          809 ---A-----GLLAV---------MAQMGCYVPAEVC--RLTPIDRVFTR----------------------LGASDRIMS  847 (1022)
T ss_dssp             ---H-----HHHHH---------HHTTTCCEESSEE--EECCCSBEEEE----------------------CC-------
T ss_pred             ---H-----HHHHH---------HhheeEEeccCcC--CCCHHHHHHHH----------------------cCCHHHHhh
Confidence               3     44332         12455 9999863  33444544321                      111111111


Q ss_pred             cCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHH-HHH---HHHHHHhc-CcEEEEEecCcchhhh
Q psy11400        222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV-EGS---MYEYCREV-GITLFTVSHRKSLWTH  296 (298)
Q Consensus       222 ~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~-~~~---i~~~l~~~-~~TiIiitH~l~~~~~  296 (298)
                               ..+++|+++++ +++|++++.+|+++||||||+|+|+.. ...   +.+.+.+. |+++|++||+++++..
T Consensus       848 ---------~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~  917 (1022)
T 2o8b_B          848 ---------GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED  917 (1022)
T ss_dssp             -----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred             ---------chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence                     13467887775 999999999999999999999999865 333   33444444 8999999999987654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.59  E-value=1.3e-15  Score=157.74  Aligned_cols=79  Identities=30%  Similarity=0.434  Sum_probs=65.7

Q ss_pred             HHHHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHH---hcCc
Q psy11400        209 YLQKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCR---EVGI  282 (298)
Q Consensus       209 ~l~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~---~~~~  282 (298)
                      .+..+||.++ +++         ...+|||||||||+||++|..+|  +++||||||++||+...+.+.+.++   +.|.
T Consensus       487 ~L~~vGL~~l~ldR---------~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~  557 (972)
T 2r6f_A          487 FLQNVGLDYLTLSR---------SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN  557 (972)
T ss_dssp             HHHHHTCTTSBSSS---------BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred             HhhhCCCCccccCC---------ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence            4666777543 333         36799999999999999999985  9999999999999988888887655   4689


Q ss_pred             EEEEEecCcchhhh
Q psy11400        283 TLFTVSHRKSLWTH  296 (298)
Q Consensus       283 TiIiitH~l~~~~~  296 (298)
                      |||+|+||++.+..
T Consensus       558 TVIvVeHdl~~i~~  571 (972)
T 2r6f_A          558 TLIVVEHDEDTMLA  571 (972)
T ss_dssp             EEEEECCCHHHHHS
T ss_pred             EEEEEecCHHHHHh
Confidence            99999999988754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.59  E-value=3.2e-17  Score=148.59  Aligned_cols=137  Identities=10%  Similarity=-0.000  Sum_probs=90.5

Q ss_pred             EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec--------cCCCcEEEEcCcCCCCC-CCH
Q psy11400        117 NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK--------PPRGKLFYVPQRPYMTL-GTL  183 (298)
Q Consensus       117 ~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~--------~~r~~i~~v~Q~~~l~~-~tv  183 (298)
                      .++|+        |||  ||  |+++       |    .|+.+|++|++..        ..++.++|++|++.++. .|+
T Consensus         4 ~v~lv--------G~nGaGKSTLln~-------L----~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv   64 (270)
T 3sop_A            4 NIMVV--------GQSGLGKSTLVNT-------L----FKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTV   64 (270)
T ss_dssp             EEEEE--------ESSSSSHHHHHHH-------H----HHHHC------------CCCCCSCCEEEESCC----CCEEEE
T ss_pred             EEEEE--------CCCCCCHHHHHHH-------H----hCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceE
Confidence            57999        999  99  9999       8    9999999998742        12467999999997764 599


Q ss_pred             HHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400        184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTS  263 (298)
Q Consensus       184 ~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs  263 (298)
                      .||+.|+....    .....+.+.+.+.    ..+.+..         ..+||||||||+++|||++.   +++|||||+
T Consensus        65 ~d~~~~g~~~~----~~~~~~~i~~~~~----~~~~~~~---------~~~LS~G~~qrv~iaRal~~---lllldep~~  124 (270)
T 3sop_A           65 IDTPGFGDQIN----NENCWEPIEKYIN----EQYEKFL---------KEEVNIARKKRIPDTRVHCC---LYFISPTGH  124 (270)
T ss_dssp             ECCCC--CCSB----CTTCSHHHHHHHH----HHHHHHH---------HHHSCTTCCSSCCCCSCCEE---EEEECCCSS
T ss_pred             Eechhhhhhcc----cHHHHHHHHHHHH----HHHHhhh---------HHhcCcccchhhhhheeeee---eEEEecCCC
Confidence            99998875321    1112233444443    2233221         45899999999999999886   999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        264 AVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       264 ~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      +||+...+. ++.+++. .++|+|.|+.+.+
T Consensus       125 gL~~lD~~~-l~~L~~~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A          125 SLRPLDLEF-MKHLSKV-VNIIPVIAKADTM  153 (270)
T ss_dssp             SCCHHHHHH-HHHHHTT-SEEEEEETTGGGS
T ss_pred             cCCHHHHHH-HHHHHhc-CcEEEEEeccccC
Confidence            999987554 4444554 8999999988755

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.58  E-value=5.9e-17  Score=152.35  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=103.3

Q ss_pred             eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---C-------------
Q psy11400        106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---P-------------  165 (298)
Q Consensus       106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---~-------------  165 (298)
                      ..+||++++|++++++        |||  ||  +++.       |    +|+++|.+|+|...   .             
T Consensus       148 ~~l~l~~~~g~vi~lv--------G~nGsGKTTll~~-------L----ag~l~~~~G~V~l~g~D~~r~~a~eql~~~~  208 (359)
T 2og2_A          148 TELQLGFRKPAVIMIV--------GVNGGGKTTSLGK-------L----AHRLKNEGTKVLMAAGDTFRAAASDQLEIWA  208 (359)
T ss_dssp             CSCCCCSSSSEEEEEE--------CCTTSCHHHHHHH-------H----HHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred             CCcceecCCCeEEEEE--------cCCCChHHHHHHH-------H----HhhccccCCEEEEecccccccchhHHHHHHH
Confidence            4589999999999999        999  99  8888       7    99999999997421   0             


Q ss_pred             -CCcEEEEcCcCC-CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHH
Q psy11400        166 -RGKLFYVPQRPY-MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR  242 (298)
Q Consensus       166 -r~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR  242 (298)
                       +..|+|++|++. ++ ..++++|+.++..      ....    ..+++.+++.+..+         .++.+||   |||
T Consensus       209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~------~~~d----~~lldt~Gl~~~~~---------~~~~eLS---kqr  266 (359)
T 2og2_A          209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKE------EGYD----VVLCDTSGRLHTNY---------SLMEELI---ACK  266 (359)
T ss_dssp             HHHTCEEECCSSSSCCHHHHHHHHHHHHHH------TTCS----EEEEECCCCSSCCH---------HHHHHHH---HHH
T ss_pred             HhcCeEEEEecccccChhhhHHHHHHHHHh------CCCH----HHHHHhcCCChhhh---------hHHHHHH---HHH
Confidence             235999999986 55 4588999876421      0110    01223334432221         2356799   999


Q ss_pred             HHHHHHHhcCCC--EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400        243 VAMARLFYHRPQ--FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR  290 (298)
Q Consensus       243 laiARaL~~~P~--iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~  290 (298)
                      ++||||++.+|+  +|+|| ||+|+|+....  .++.++.+.|+|++||-
T Consensus       267 ~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThl  313 (359)
T 2og2_A          267 KAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKL  313 (359)
T ss_dssp             HHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESC
T ss_pred             HHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecC
Confidence            999999999999  99999 99999987553  33434468999999993

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.57  E-value=2.7e-15  Score=154.41  Aligned_cols=66  Identities=24%  Similarity=0.292  Sum_probs=58.6

Q ss_pred             cCCCCChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHH---hcCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCR---EVGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~~~  296 (298)
                      ...+|||||||||+||++|..+|  +++||||||++||+...+.+.+.++   +.|.|||+|+||++.+..
T Consensus       376 ~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~  446 (842)
T 2vf7_A          376 STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR  446 (842)
T ss_dssp             BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred             CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence            46799999999999999999999  5999999999999988888877654   469999999999987654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.52  E-value=2.1e-14  Score=133.82  Aligned_cols=66  Identities=26%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             cCCCCChhHHH------HHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        231 WIDVLSGGEKQ------RVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       231 ~~~~LSgGqkQ------RlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      .+..|||||||      |+++|||++.+|++|||||||++||+.....+.+++++   .+.|+|+|||+.+....
T Consensus       245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~  319 (339)
T 3qkt_A          245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA  319 (339)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG
T ss_pred             ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence            46789999999      67888899999999999999999999999999888765   37899999999876543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.51  E-value=1.4e-14  Score=142.30  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             CCCC-ChhHHHHHHHHHHHhcCC--CEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhhh
Q psy11400        232 IDVL-SGGEKQRVAMARLFYHRP--QFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~L-SgGqkQRlaiARaL~~~P--~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~~  296 (298)
                      ...| ||||||||+|||||+.+|  ++|||||||+|||+.....+.+.+++.  ++|||+|||+++.+..
T Consensus       394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~  463 (517)
T 4ad8_A          394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR  463 (517)
T ss_dssp             SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence            4567 999999999999999999  999999999999999999888877653  8999999999987654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.51  E-value=1.5e-17  Score=144.08  Aligned_cols=151  Identities=11%  Similarity=-0.010  Sum_probs=88.7

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC--ceeec-----cCCCcEEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG--GTVTK-----PPRGKLFYV  172 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~--G~i~~-----~~r~~i~~v  172 (298)
                      +++|  .+|++|++++|+        |||  ||  |+++       +    .|+++...  +.+..     ..++.++|+
T Consensus        11 ~~~~--~~i~~Gei~~l~--------GpnGsGKSTLl~~-------l----~gl~~~i~~~~~~~~~~~~~~~~~~i~~~   69 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLS--------GPSAVGKSTVVRC-------L----RERIPNLHFSVSATTRAPRPGEVDGVDYH   69 (207)
T ss_dssp             ----------CCCEEEEE--------CSTTSSHHHHHHH-------H----HHHSTTCEECCCEESSCCCTTCCBTTTBE
T ss_pred             CCCC--CCCCCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhCCceEEcccccccCCcccccCCCeeE
Confidence            8888  799999999999        999  99  8998       6    66654211  22211     123569999


Q ss_pred             cCcCCCCC-CCHHHHHccCCcchhh-hhcCCCHHHHHHHHHH----------cCCchhhhhcCCcccccccCCCCChhHH
Q psy11400        173 PQRPYMTL-GTLRDQVIYPHTKEDM-IQKGITDADLTEYLQK----------VQLGYILNREKGWDTVADWIDVLSGGEK  240 (298)
Q Consensus       173 ~Q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~----------~~l~~~~~~~~g~d~~~~~~~~LSgGqk  240 (298)
                      ||++..|. .++.+|+......... .......+++.+.++.          +++.++.++         .+..||    
T Consensus        70 ~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~lS----  136 (207)
T 1znw_A           70 FIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT---------MPEAVT----  136 (207)
T ss_dssp             ECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH---------CTTSEE----
T ss_pred             ecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh---------cCCcEE----
Confidence            99986543 3555555322111000 0011122333333322          233222222         245677    


Q ss_pred             HHHHHHHHHhcCCCEEEEeccccCC----CHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        241 QRVAMARLFYHRPQFAILDECTSAV----SVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       241 QRlaiARaL~~~P~iliLDEPTs~L----D~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                             ||+.+|++++|||||+++    |+..+..+.+++++    .+.|+|+|||+++.+.
T Consensus       137 -------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~  192 (207)
T 1znw_A          137 -------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESAC  192 (207)
T ss_dssp             -------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHH
T ss_pred             -------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHH
Confidence                   899999999999999998    67777777766543    4899999999998765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.48  E-value=4e-14  Score=139.28  Aligned_cols=131  Identities=12%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHH
Q psy11400        109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLR  184 (298)
Q Consensus       109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~  184 (298)
                      +..+++|++++|+        |+|  ||  |++.       +    ++..++. |.      +.+.|++|++.   ..+.
T Consensus       275 ~g~i~~G~i~~i~--------G~~GsGKSTLl~~-------l----~g~~~~~-G~------~vi~~~~ee~~---~~l~  325 (525)
T 1tf7_A          275 GGGFFKDSIILAT--------GATGTGKTLLVSR-------F----VENACAN-KE------RAILFAYEESR---AQLL  325 (525)
T ss_dssp             TSSEESSCEEEEE--------ECTTSSHHHHHHH-------H----HHHHHTT-TC------CEEEEESSSCH---HHHH
T ss_pred             CCCCCCCcEEEEE--------eCCCCCHHHHHHH-------H----HHHHHhC-CC------CEEEEEEeCCH---HHHH
Confidence            4589999999999        999  99  8777       6    7776664 42      22678888862   1333


Q ss_pred             HHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccC
Q psy11400        185 DQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA  264 (298)
Q Consensus       185 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~  264 (298)
                      .+...         .+.+.   .+ +...++..+.+         ..+.+|||||+||+++|+++..+|+++|+| ||++
T Consensus       326 ~~~~~---------~g~~~---~~-~~~~g~~~~~~---------~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~  382 (525)
T 1tf7_A          326 RNAYS---------WGMDF---EE-MERQNLLKIVC---------AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSA  382 (525)
T ss_dssp             HHHHT---------TSCCH---HH-HHHTTSEEECC---------CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHH
T ss_pred             HHHHH---------cCCCH---HH-HHhCCCEEEEE---------eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHH
Confidence            33211         11221   11 22333332222         236789999999999999999999999999 9999


Q ss_pred             CCHH-----HHHHHHHHH---HhcCcEEEEEecCc
Q psy11400        265 VSVD-----VEGSMYEYC---REVGITLFTVSHRK  291 (298)
Q Consensus       265 LD~~-----~~~~i~~~l---~~~~~TiIiitH~l  291 (298)
                      ||..     ....+.+++   ++.|+|+|+++|+.
T Consensus       383 Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          383 LARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            9988     777766654   44699999999998

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.47  E-value=7.5e-16  Score=148.54  Aligned_cols=152  Identities=13%  Similarity=0.010  Sum_probs=112.3

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++++++.|..+..        +|+++ |+|.+|++++|+        |||  ||  |+++       +    +|++
T Consensus       130 ~~l~~~~v~~~~~tg~~--------vld~v-l~i~~Gq~~~Iv--------G~sGsGKSTLl~~-------I----ag~~  181 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVR--------AINAL-LTVGRGQRMGLF--------AGSGVGKSVLLGM-------M----ARYT  181 (438)
T ss_dssp             CTTTSCCCCSBCCCSCH--------HHHHH-SCCBTTCEEEEE--------ECTTSSHHHHHHH-------H----HHHS
T ss_pred             CceEEeccceecCCCce--------EEeee-EEecCCCEEEEE--------CCCCCCHHHHHHH-------H----hccc
Confidence            46889999999964444        99999 999999999999        999  99  9998       8    9999


Q ss_pred             ccCCceeecc-------------------CCCcEEEEcCcCC--CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc
Q psy11400        155 PLFGGTVTKP-------------------PRGKLFYVPQRPY--MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV  213 (298)
Q Consensus       155 ~~~~G~i~~~-------------------~r~~i~~v~Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~  213 (298)
                      +|+.|.+...                   .++.++|++|+..  +...++.+|+.+...                .....
T Consensus       182 ~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae----------------~~~~~  245 (438)
T 2dpy_A          182 RADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAE----------------DFRDR  245 (438)
T ss_dssp             CCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH----------------HHHTT
T ss_pred             CCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHH----------------HHHhC
Confidence            9998876421                   1356999999632  234577777765310                00000


Q ss_pred             CCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-------Cc----
Q psy11400        214 QLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-------GI----  282 (298)
Q Consensus       214 ~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-------~~----  282 (298)
                      + .+.       ....+....||+|| ||++||   +.+|++      |+|||+.+...+.+++++.       |+    
T Consensus       246 ~-~~v-------~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~  307 (438)
T 2dpy_A          246 G-QHV-------LLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAF  307 (438)
T ss_dssp             T-CEE-------EEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEE
T ss_pred             C-CCH-------HHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccce
Confidence            0 000       00112245799999 999999   889988      9999999999999988652       43    


Q ss_pred             -EEEEEecCcc
Q psy11400        283 -TLFTVSHRKS  292 (298)
Q Consensus       283 -TiIiitH~l~  292 (298)
                       |++++|||++
T Consensus       308 ~tVlv~tHdl~  318 (438)
T 2dpy_A          308 YTVLTEGDDQQ  318 (438)
T ss_dssp             EEEECSSSCSC
T ss_pred             eEEEEeCCCcc
Confidence             9999999996

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.45  E-value=3.9e-15  Score=132.24  Aligned_cols=146  Identities=9%  Similarity=0.038  Sum_probs=90.8

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-cCCCcEEEEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-PPRGKLFYVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-~~r~~i~~v~Q~~~l  178 (298)
                      +|+|+||++++|++++|+        |||  ||  |+++       +    .+++    |.+.. ..++.++|++|+++.
T Consensus        14 ~l~~isl~i~~g~iigI~--------G~~GsGKSTl~k~-------L----~~~l----G~~~~~~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVS--------GGTASGKSTVCEK-------I----MELL----GQNEVEQRQRKVVILSQDRFY   70 (245)
T ss_dssp             ---------CCSEEEEEE--------CSTTSSHHHHHHH-------H----HHHH----TGGGSCGGGCSEEEEEGGGGB
T ss_pred             eecceeccCCCCEEEEEE--------CCCCCCHHHHHHH-------H----HHHh----chhcccccCCceEEEeCCcCc
Confidence            899999999999999999        999  99  8888       6    5543    22211 235679999999754


Q ss_pred             CCCCHHHHHccCCcchhhh-hcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400        179 TLGTLRDQVIYPHTKEDMI-QKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI  257 (298)
Q Consensus       179 ~~~tv~eni~~~~~~~~~~-~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~ili  257 (298)
                      ...|+.+++.+........ ......+.+.+.++.+  .+..         ......||+||+||+++ ++++.+|+++|
T Consensus        71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~---------~~~~~~ls~g~~~r~~~-~~~~~~~~~li  138 (245)
T 2jeo_A           71 KVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGK---------TVEVPTYDFVTHSRLPE-TTVVYPADVVL  138 (245)
T ss_dssp             CCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTC---------CEEECCEETTTTEECSS-CEEECCCSEEE
T ss_pred             cccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCC---------CeecccccccccCccCc-eEEecCCCEEE
Confidence            5568888875432110000 0112234445555542  1111         11356899999999988 68899999999


Q ss_pred             EeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400        258 LDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK  291 (298)
Q Consensus       258 LDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l  291 (298)
                      ||||....+...    .+.   .+.|++++||+.
T Consensus       139 lDg~~~~~~~~l----~~~---~~~~i~v~th~~  165 (245)
T 2jeo_A          139 FEGILVFYSQEI----RDM---FHLRLFVDTDSD  165 (245)
T ss_dssp             EECTTTTTSHHH----HTT---CSEEEEEECCHH
T ss_pred             EeCccccccHHH----HHh---cCeEEEEECCHH
Confidence            999988887642    221   388999999973

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.44  E-value=3.7e-13  Score=139.74  Aligned_cols=63  Identities=17%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHH----HHHH-hcCcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMY----EYCR-EVGITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~----~~l~-~~~~TiIiitH~l~~~~  295 (298)
                      .+++|+||+|++.++++ +.+|+++||||||+|+|+.....+.    +.+. +.|+|+|++||++++..
T Consensus       733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence            46899999999999999 8999999999999999997655543    3332 35899999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.38  E-value=4.7e-16  Score=134.34  Aligned_cols=137  Identities=13%  Similarity=0.062  Sum_probs=103.0

Q ss_pred             EeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCC---CCHH
Q psy11400        112 VRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTL---GTLR  184 (298)
Q Consensus       112 i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~---~tv~  184 (298)
                      .++|++++|+        |+|  ||  |+++       +    .|++.|           +++|++|+++++.   .++.
T Consensus         3 ~~~~~~i~i~--------G~~GsGKSTl~~~-------l----~~~~~~-----------~i~~v~~d~~~~~~~~~~~~   52 (211)
T 3asz_A            3 APKPFVIGIA--------GGTASGKTTLAQA-------L----ARTLGE-----------RVALLPMDHYYKDLGHLPLE   52 (211)
T ss_dssp             --CCEEEEEE--------ESTTSSHHHHHHH-------H----HHHHGG-----------GEEEEEGGGCBCCCTTSCHH
T ss_pred             CCCcEEEEEE--------CCCCCCHHHHHHH-------H----HHHhCC-----------CeEEEecCccccCcccccHH
Confidence            5789999999        999  99  8998       7    777654           5899999997653   4787


Q ss_pred             HHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH----HHHHHHHHHHhcCCCEEEEec
Q psy11400        185 DQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE----KQRVAMARLFYHRPQFAILDE  260 (298)
Q Consensus       185 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq----kQRlaiARaL~~~P~iliLDE  260 (298)
                      ++..+....    ......+.+.++++.+++.+.+..+         +..+|+||    +||+++|++++.+|.++++||
T Consensus        53 ~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de  119 (211)
T 3asz_A           53 ERLRVNYDH----PDAFDLALYLEHAQALLRGLPVEMP---------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPK  119 (211)
T ss_dssp             HHHHSCTTS----GGGBCHHHHHHHHHHHHTTCCEEEC---------CEETTTTEECSSCEEECCCSEEEEESTTTTSSH
T ss_pred             HhcCCCCCC----hhhhhHHHHHHHHHHHHcCCCcCCC---------cccCcccCCCCCeEEeCCCcEEEEeehhhccCH
Confidence            876554211    1123456677788877765544333         56789996    578899999999999999999


Q ss_pred             cccC-------CCHHHHHHHHHHHHh----cCcEEEEEecCc
Q psy11400        261 CTSA-------VSVDVEGSMYEYCRE----VGITLFTVSHRK  291 (298)
Q Consensus       261 PTs~-------LD~~~~~~i~~~l~~----~~~TiIiitH~l  291 (298)
                      ||++       ||+..+..+.+.+++    .|.|++.++|+.
T Consensus       120 ~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          120 ELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999       898777777766543    489999999984

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.37  E-value=1.2e-12  Score=123.42  Aligned_cols=64  Identities=31%  Similarity=0.380  Sum_probs=56.4

Q ss_pred             CCCCChhHHHHH------HHHHHHhcC-CCEEEEeccccCCCHHHHHHHHHHHHhc--CcEEEEEecCcchhh
Q psy11400        232 IDVLSGGEKQRV------AMARLFYHR-PQFAILDECTSAVSVDVEGSMYEYCREV--GITLFTVSHRKSLWT  295 (298)
Q Consensus       232 ~~~LSgGqkQRl------aiARaL~~~-P~iliLDEPTs~LD~~~~~~i~~~l~~~--~~TiIiitH~l~~~~  295 (298)
                      +..||||||||+      ++||+++.+ |+++||||||++||+.....+.+.+++.  +.+||+|||++....
T Consensus       278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~  350 (371)
T 3auy_A          278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED  350 (371)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGG
T ss_pred             hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHh
Confidence            468999999988      667999999 9999999999999999999999998763  469999999987543

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.36  E-value=7.3e-13  Score=124.52  Aligned_cols=59  Identities=19%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             CC-CCChhHHHHHHHHHHHh---------cCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400        232 ID-VLSGGEKQRVAMARLFY---------HRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR  290 (298)
Q Consensus       232 ~~-~LSgGqkQRlaiARaL~---------~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~  290 (298)
                      +. .||||||||++||++|+         .+|++||||||||+||+.....+.+.+++.+.|+|++||.
T Consensus       262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~  330 (359)
T 2o5v_A          262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL  330 (359)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred             hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence            44 69999999999999999         8999999999999999999999999998866899999993

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.36  E-value=8.1e-13  Score=126.70  Aligned_cols=64  Identities=28%  Similarity=0.499  Sum_probs=57.1

Q ss_pred             CCCChhHHHHHHHHHHHh----cCCCEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLFY----HRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~----~~P~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~~~  296 (298)
                      ..||||||||++||++|+    .+|+++||||||++||+.....+.+++++.   +.++|+|||+..+...
T Consensus       332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~  402 (430)
T 1w1w_A          332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK  402 (430)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence            469999999999999999    589999999999999999999999988763   5799999999776543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.33  E-value=4.3e-13  Score=120.77  Aligned_cols=117  Identities=12%  Similarity=0.110  Sum_probs=84.3

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC-CceeeccCCCcEEEEcCcCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF-GGTVTKPPRGKLFYVPQRPYM  178 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~-~G~i~~~~r~~i~~v~Q~~~l  178 (298)
                      +|+++|  +++|++++|+        |||  ||  ++++       +    .|+++|+ +|+|..... .+.|++|++. 
T Consensus        16 vl~~i~--i~~g~~v~i~--------Gp~GsGKSTll~~-------l----~g~~~~~~~G~I~~~g~-~i~~~~~~~~-   72 (261)
T 2eyu_A           16 KVLELC--HRKMGLILVT--------GPTGSGKSTTIAS-------M----IDYINQTKSYHIITIED-PIEYVFKHKK-   72 (261)
T ss_dssp             HHHHGG--GCSSEEEEEE--------CSTTCSHHHHHHH-------H----HHHHHHHCCCEEEEEES-SCCSCCCCSS-
T ss_pred             HHHHHh--hCCCCEEEEE--------CCCCccHHHHHHH-------H----HHhCCCCCCCEEEEcCC-cceeecCCcc-
Confidence            899999  8999999999        999  99  9998       8    8999887 898753211 2334444321 


Q ss_pred             CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEE
Q psy11400        179 TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAIL  258 (298)
Q Consensus       179 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliL  258 (298)
                               .+-       ..           ..++++               ...|      |++||+||..+|+++++
T Consensus        73 ---------~~v-------~q-----------~~~gl~---------------~~~l------~~~la~aL~~~p~illl  104 (261)
T 2eyu_A           73 ---------SIV-------NQ-----------REVGED---------------TKSF------ADALRAALREDPDVIFV  104 (261)
T ss_dssp             ---------SEE-------EE-----------EEBTTT---------------BSCH------HHHHHHHHHHCCSEEEE
T ss_pred             ---------eee-------eH-----------HHhCCC---------------HHHH------HHHHHHHHhhCCCEEEe
Confidence                     000       00           011111               1123      89999999999999999


Q ss_pred             eccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        259 DECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       259 DEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      ||||   |+++...+.+... .|.++++++|+.+...
T Consensus       105 DEp~---D~~~~~~~l~~~~-~g~~vl~t~H~~~~~~  137 (261)
T 2eyu_A          105 GEMR---DLETVETALRAAE-TGHLVFGTLHTNTAID  137 (261)
T ss_dssp             SCCC---SHHHHHHHHHHHH-TTCEEEEEECCSSHHH
T ss_pred             CCCC---CHHHHHHHHHHHc-cCCEEEEEeCcchHHH
Confidence            9999   9988776666543 4899999999987543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.33  E-value=3.3e-12  Score=132.98  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             CCCChhHHHHHHHHHHH--hcCCCEEEEeccccCCCHHHHHHH----HHHHHh-cCcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLF--YHRPQFAILDECTSAVSVDVEGSM----YEYCRE-VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL--~~~P~iliLDEPTs~LD~~~~~~i----~~~l~~-~~~TiIiitH~l~~~~~  296 (298)
                      ..+|+|++++..+|+++  +.+|+++||||||+|+|+.....+    .+.+.+ .|+|+|++||+.++...
T Consensus       720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l  790 (934)
T 3thx_A          720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL  790 (934)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred             HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence            35788888888888888  999999999999999999765444    344444 58999999999887654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.27  E-value=4.3e-13  Score=125.58  Aligned_cols=151  Identities=11%  Similarity=-0.001  Sum_probs=103.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..++++++++.|..+..        +++++ |+|.+|++++|+        |+|  ||  |+++       +    .|+.
T Consensus        44 ~~i~~~~l~~~~~tg~~--------ald~l-l~i~~Gq~~gIi--------G~nGaGKTTLl~~-------I----~g~~   95 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVR--------AIDGL-LTCGIGQRIGIF--------AGSGVGKSTLLGM-------I----CNGA   95 (347)
T ss_dssp             CSTTCCCCCSEECCSCH--------HHHHH-SCEETTCEEEEE--------ECTTSSHHHHHHH-------H----HHHS
T ss_pred             CCeeecccceecCCCCE--------EEEee-eeecCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCC
Confidence            46789999999964444        89999 999999999999        999  99  9998       8    8888


Q ss_pred             ccCCceeeccC------------------CCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc
Q psy11400        155 PLFGGTVTKPP------------------RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG  216 (298)
Q Consensus       155 ~~~~G~i~~~~------------------r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~  216 (298)
                      .|+.|.+....                  ++.+.+++|...                       ....++..++..+.+.
T Consensus        96 ~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----------------------~~~~r~~~~~~~~~~a  152 (347)
T 2obl_A           96 SADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----------------------PALERMKAAFTATTIA  152 (347)
T ss_dssp             CCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----------------------CHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----------------------CHHHHHHHHHHHHHHH
Confidence            88877653211                  111233332210                       0112233333333332


Q ss_pred             hh-hhhcCCcccc--cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-----Cc-----E
Q psy11400        217 YI-LNREKGWDTV--ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-----GI-----T  283 (298)
Q Consensus       217 ~~-~~~~~g~d~~--~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-----~~-----T  283 (298)
                      ++ .+  .+.+..  .+.+..||+|| ||+++|   +.+|++      |+|+|+.....+.+++++.     |.     |
T Consensus       153 e~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~t  220 (347)
T 2obl_A          153 EYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYT  220 (347)
T ss_dssp             HHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEE
T ss_pred             HHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEE
Confidence            22 12  122221  13467899999 999999   688888      9999999999999988752     55     8


Q ss_pred             EEEEecCcc
Q psy11400        284 LFTVSHRKS  292 (298)
Q Consensus       284 iIiitH~l~  292 (298)
                      |+++||+++
T Consensus       221 Vl~~thdl~  229 (347)
T 2obl_A          221 VLLESDNVN  229 (347)
T ss_dssp             EECCSSCCC
T ss_pred             EEEeCCCCC
Confidence            999999987

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.27  E-value=4.8e-14  Score=129.44  Aligned_cols=152  Identities=10%  Similarity=-0.030  Sum_probs=75.3

Q ss_pred             eeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc-cccCC
Q psy11400         84 LGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL-WPLFG  158 (298)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l-~~~~~  158 (298)
                      +||++.|.. ..        ++++++|+|      +|+        |+|  ||  |++.       |    .|. ..|.+
T Consensus         2 ~~l~~~~~~-~~--------~l~~~~~~I------~lv--------G~nG~GKSTLl~~-------L----~g~~~~~~~   47 (301)
T 2qnr_A            2 SNLPNQVHR-KS--------VKKGFEFTL------MVV--------GESGLGKSTLINS-------L----FLTDLYPER   47 (301)
T ss_dssp             -------------------------CEEE------EEE--------EETTSSHHHHHHH-------H----HC-------
T ss_pred             CCCcceECC-EE--------EEcCCCEEE------EEE--------CCCCCCHHHHHHH-------H----hCCCccCCC
Confidence            467777742 33        899999998      999        999  99  8887       5    554 45555


Q ss_pred             ceee-------cc-CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccc
Q psy11400        159 GTVT-------KP-PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA  229 (298)
Q Consensus       159 G~i~-------~~-~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~  229 (298)
                      | +.       .. ....+++++|.+..+ ..+++|+..++....       ..+....+.+.  +.+..++        
T Consensus        48 g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-------~~e~~~~l~~~--l~~~~~~--------  109 (301)
T 2qnr_A           48 V-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN-------CRDCFKTIISY--IDEQFER--------  109 (301)
T ss_dssp             ------------------CEEEEC---CCEEEEEEEEC------------------CTTHHHH--HHHHHHH--------
T ss_pred             C-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC-------cHHHHHHHHHH--HHHHHHH--------
Confidence            5 31       11 134588999986543 347777665542110       00000111111  1111111        


Q ss_pred             ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccC-CCHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy11400        230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSA-VSVDVEGSMYEYCREVGITLFTVSHRKS  292 (298)
Q Consensus       230 ~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~-LD~~~~~~i~~~l~~~~~TiIiitH~l~  292 (298)
                       ...++|||||||+.+|||++    ++++||||++ ||+...+.+.++..+.+.++|+.+||+.
T Consensus       110 -~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          110 -YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             -HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred             -HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence             24579999999999999986    9999999985 9998754443332234789999999985

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.24  E-value=2.1e-14  Score=141.32  Aligned_cols=139  Identities=14%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             ceeeeeE-EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC----------CCc
Q psy11400        104 SFFDYMF-GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP----------RGK  168 (298)
Q Consensus       104 ~l~~isl-~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~----------r~~  168 (298)
                      +|+++|| .|++|++++|+        |||  ||  |+++       +  +..|+.+|.+|.+....          ++.
T Consensus        27 ~Ld~i~~G~i~~Ge~~~l~--------G~nGsGKSTL~~~-------~--ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~   89 (525)
T 1tf7_A           27 GFDDISHGGLPIGRSTLVS--------GTSGTGKTLFSIQ-------F--LYNGIIEFDEPGVFVTFEETPQDIIKNARS   89 (525)
T ss_dssp             THHHHTTSSEETTSEEEEE--------ESTTSSHHHHHHH-------H--HHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred             hHHHhcCCCCCCCeEEEEE--------cCCCCCHHHHHHH-------H--HHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence            8999999 99999999999        999  99  7665       2  01688888889875321          245


Q ss_pred             EEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400        169 LFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       169 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa  248 (298)
                      +||++|++...     +|+.+...      .. . .+..++++.+++.++.++         .+..||+|          
T Consensus        90 ~g~~~q~~~~~-----~~l~~~~~------~~-~-~~~~~~l~~~~l~~~~~~---------~~~~LS~g----------  137 (525)
T 1tf7_A           90 FGWDLAKLVDE-----GKLFILDA------SP-D-PEGQEVVGGFDLSALIER---------INYAIQKY----------  137 (525)
T ss_dssp             GTCCHHHHHHT-----TSEEEEEC------CC-C-SSCCSCCSSHHHHHHHHH---------HHHHHHHH----------
T ss_pred             cCCChHHhhcc-----CcEEEEec------Cc-c-cchhhhhcccCHHHHHHH---------HHHHHHHc----------
Confidence            78888876311     11211000      00 0 000011122222222222         13456665          


Q ss_pred             HhcCCCEEEEeccccC-----CCHHHHHHHHHHHH---hcCcEEEEEecCcchh
Q psy11400        249 FYHRPQFAILDECTSA-----VSVDVEGSMYEYCR---EVGITLFTVSHRKSLW  294 (298)
Q Consensus       249 L~~~P~iliLDEPTs~-----LD~~~~~~i~~~l~---~~~~TiIiitH~l~~~  294 (298)
                         +|++++|||||+.     +|+...+.+.++++   +.|+|+|++||+++.+
T Consensus       138 ---~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~  188 (525)
T 1tf7_A          138 ---RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY  188 (525)
T ss_dssp             ---TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred             ---CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence               5789999999985     58888887777654   3599999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.24  E-value=6e-14  Score=120.26  Aligned_cols=160  Identities=10%  Similarity=0.036  Sum_probs=84.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc-
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW-  154 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~-  154 (298)
                      .++++|++|.|.  ..        ++++  |.+++|..++|+        |++  ||  |++.       +    .|.. 
T Consensus         3 ~l~~~~~~~~~~--~~--------~l~~--~~~~~~~~v~lv--------G~~g~GKSTLl~~-------l----~g~~~   51 (210)
T 1pui_A            3 NLNYQQTHFVMS--AP--------DIRH--LPSDTGIEVAFA--------GRSNAGKSSALNT-------L----TNQKS   51 (210)
T ss_dssp             --------CEEE--ES--------SGGG--SSCSCSEEEEEE--------ECTTSSHHHHHTT-------T----CCC--
T ss_pred             chhhhhhhheee--cC--------CHhH--CCCCCCcEEEEE--------CCCCCCHHHHHHH-------H----hCCCc
Confidence            478999999995  23        7877  899999999999        999  99  8888       5    5544 


Q ss_pred             ----ccCCceeeccC----CCcEEEEcCcCCCC-----CC---CHHHHHc--c--CCcch-----hhhhcCCC--HHHHH
Q psy11400        155 ----PLFGGTVTKPP----RGKLFYVPQRPYMT-----LG---TLRDQVI--Y--PHTKE-----DMIQKGIT--DADLT  207 (298)
Q Consensus       155 ----~~~~G~i~~~~----r~~i~~v~Q~~~l~-----~~---tv~eni~--~--~~~~~-----~~~~~~~~--~~~i~  207 (298)
                          .|+.|.+....    ...+-++ +-|-..     ..   ..+..+.  +  .....     ........  +.++.
T Consensus        52 ~~~~~~~~G~~~~~~~~~~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~  130 (210)
T 1pui_A           52 LARTSKTPGRTQLINLFEVADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI  130 (210)
T ss_dssp             -----------CCEEEEEEETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred             cccccCCCccceeeEEEEecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH
Confidence                56666543210    0111111 111110     00   0111110  0  00000     00001112  22344


Q ss_pred             HHHHHcCCchhhhhcCCcccccccCCCCChhHHHH-HHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR-VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       208 ~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR-laiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      ++++..++..++        ...+...+|+||+|| +..+++++.+|+++++|||||++|......+++.+.+
T Consensus       131 ~~~~~~~~~~~~--------v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          131 EWAVDSNIAVLV--------LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             HHHHHTTCCEEE--------EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCCeEE--------EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            555554443211        112456799999999 8999999999999999999999999888888777654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.23  E-value=4.5e-13  Score=121.83  Aligned_cols=152  Identities=14%  Similarity=0.190  Sum_probs=83.7

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCC
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMT  179 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~  179 (298)
                      +|+++++.+++|++++|+        |+|  ||  |++.       +    ++...+.+|.       .+.|+..+.  .
T Consensus        24 ~Ld~i~~~l~~G~~~~i~--------G~~G~GKTTl~~~-------i----a~~~~~~~G~-------~v~~~~~e~--~   75 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVT--------SGSGMGKSTFVRQ-------Q----ALQWGTAMGK-------KVGLAMLEE--S   75 (296)
T ss_dssp             THHHHHCSBCTTCEEEEE--------ESTTSSHHHHHHH-------H----HHHHHHTSCC-------CEEEEESSS--C
T ss_pred             HHHHHhcCCCCCeEEEEE--------eCCCCCHHHHHHH-------H----HHHHHHHcCC-------eEEEEeCcC--C
Confidence            899999999999999999        999  99  7777       6    7877777662       133333221  0


Q ss_pred             CCCHHHHHc-c--CCcchh--hhh-cCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhH-HHHHHHHHHHhcC
Q psy11400        180 LGTLRDQVI-Y--PHTKED--MIQ-KGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGE-KQRVAMARLFYHR  252 (298)
Q Consensus       180 ~~tv~eni~-~--~~~~~~--~~~-~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGq-kQRlaiARaL~~~  252 (298)
                      ...+...+. +  ......  ... .....++..+..+.+     ++.. .+. ..+.+..+|.+| +||+. |+++.++
T Consensus        76 ~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----l~~~-~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~  147 (296)
T 1cr0_A           76 VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL-----FGND-TFH-LYDSFAEAETDRLLAKLA-YMRSGLG  147 (296)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH-----HSSS-CEE-EECCCCSCCHHHHHHHHH-HHHHTTC
T ss_pred             HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH-----hccC-CEE-EECCCCCCCHHHHHHHHH-HHHHhcC
Confidence            001111111 0  000000  000 000011111222111     0000 000 111235689998 67777 9999999


Q ss_pred             CCEEEEecccc---C---CCH-HHHHHHHHHH----HhcCcEEEEEecCc
Q psy11400        253 PQFAILDECTS---A---VSV-DVEGSMYEYC----REVGITLFTVSHRK  291 (298)
Q Consensus       253 P~iliLDEPTs---~---LD~-~~~~~i~~~l----~~~~~TiIiitH~l  291 (298)
                      |+++|+||||+   +   +|. .....+.+.+    ++.|+|||++||..
T Consensus       148 p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          148 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             CSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             CCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence            99999999999   4   344 4444455444    44599999999995

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.22  E-value=2.3e-11  Score=109.69  Aligned_cols=142  Identities=11%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec----cCCCcEEEEcCcCCCCCCC
Q psy11400        111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK----PPRGKLFYVPQRPYMTLGT  182 (298)
Q Consensus       111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~----~~r~~i~~v~Q~~~l~~~t  182 (298)
                      .+++|++++|+        |||  ||  |++.       +    ++...  .|.+..    .....+.|+..+...  ..
T Consensus        26 gl~~G~i~~i~--------G~~GsGKTtl~~~-------l----~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~   82 (279)
T 1nlf_A           26 NMVAGTVGALV--------SPGGAGKSMLALQ-------L----AAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TA   82 (279)
T ss_dssp             TEETTSEEEEE--------ESTTSSHHHHHHH-------H----HHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HH
T ss_pred             CccCCCEEEEE--------cCCCCCHHHHHHH-------H----HHHHh--cCCCcCCCccCCCccEEEEECCCCH--HH
Confidence            57899999999        999  99  6555       4    33222  232211    113457777654321  11


Q ss_pred             HHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccc
Q psy11400        183 LRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT  262 (298)
Q Consensus       183 v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPT  262 (298)
                      +...+..       ...........++++.+.+.+..++         .+..||+||+|++   ++++.+|+++|+||||
T Consensus        83 ~~~r~~~-------~g~~~~~~~~~~~~~~l~l~~~~~~---------~~~~ls~g~~~~i---~~l~~~~~livlDe~~  143 (279)
T 1nlf_A           83 IHHRLHA-------LGAHLSAEERQAVADGLLIQPLIGS---------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLR  143 (279)
T ss_dssp             HHHHHHH-------HHTTSCHHHHHHHHHHEEECCCTTS---------CCCTTSHHHHHHH---HHHHTTCSEEEEECGG
T ss_pred             HHHHHHH-------HHhhcChhhhhhccCceEEeecCCC---------CcccCCHHHHHHH---HHhcCCCCEEEECCHH
Confidence            1111110       0012233445556666665443322         3678999998865   6888999999999999


Q ss_pred             c--CCCHHHH---HHHHH----HHHhcCcEEEEEecCcchh
Q psy11400        263 S--AVSVDVE---GSMYE----YCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       263 s--~LD~~~~---~~i~~----~l~~~~~TiIiitH~l~~~  294 (298)
                      +  ++|....   ..+.+    +.++.|+|+|+++|.....
T Consensus       144 ~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          144 RFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             GGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             HhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence            9  8886322   33433    3345699999999987643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.21  E-value=2.3e-13  Score=130.36  Aligned_cols=155  Identities=8%  Similarity=-0.036  Sum_probs=89.8

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      +.+.++|+++.|+. ..        +++++||+|      +|+        |+|  ||  |++.       +    .|..
T Consensus        10 ~~l~~~~l~~~y~~-~~--------vl~~vsf~I------~lv--------G~sGaGKSTLln~-------L----~g~~   55 (418)
T 2qag_C           10 GYVGFANLPNQVYR-KS--------VKRGFEFTL------MVV--------GESGLGKSTLINS-------L----FLTD   55 (418)
T ss_dssp             -----CCCCCCTTT-TT--------CC-CCCEEE------EEE--------CCTTSSHHHHHHH-------H----TTCC
T ss_pred             CcEEEEecceeECC-EE--------EecCCCEEE------EEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            46899999999953 33        899999998      999        999  99  8888       6    5554


Q ss_pred             ccCCc--eeec-----cCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        155 PLFGG--TVTK-----PPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       155 ~~~~G--~i~~-----~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      .+..|  .+..     .....+++++|++.++ ..|+.|++.++....    .......+.+.+         +      
T Consensus        56 ~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i---------~------  116 (418)
T 2qag_C           56 LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYI---------D------  116 (418)
T ss_dssp             CCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------------CHHHHHHH---------H------
T ss_pred             CCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHH---------H------
Confidence            43222  1110     1124588999987665 468888877653210    000001111111         1      


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCC---EEEEeccc-cCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQ---FAILDECT-SAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~---iliLDEPT-s~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                            ..++.+++||++||||++.+|+   ++++|||| ++||+.....+ +.+.. +.++|+|.|..+++
T Consensus       117 ------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l-k~L~~-~v~iIlVinK~Dll  180 (418)
T 2qag_C          117 ------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM-KRLHE-KVNIIPLIAKADTL  180 (418)
T ss_dssp             ------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH-HHHTT-TSEEEEEEESTTSS
T ss_pred             ------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH-HHHhc-cCcEEEEEEcccCc
Confidence                  1356677889999999999999   99999999 69998775433 44444 78999999988764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.19  E-value=1.7e-12  Score=112.64  Aligned_cols=58  Identities=14%  Similarity=0.123  Sum_probs=38.2

Q ss_pred             CChhH-HHHHHHHHHHhc-------CCCEEEEeccccCCCHH----------------HHHHHHHHHHhcCcEEEEEecC
Q psy11400        235 LSGGE-KQRVAMARLFYH-------RPQFAILDECTSAVSVD----------------VEGSMYEYCREVGITLFTVSHR  290 (298)
Q Consensus       235 LSgGq-kQRlaiARaL~~-------~P~iliLDEPTs~LD~~----------------~~~~i~~~l~~~~~TiIiitH~  290 (298)
                      .+.++ ++.+..+++++.       +|+++++||||+++|+.                ....+.++.++.|+|||++||.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            34443 333555666555       99999999999999873                1122333344569999999995


Q ss_pred             cc
Q psy11400        291 KS  292 (298)
Q Consensus       291 l~  292 (298)
                      ..
T Consensus       180 ~~  181 (231)
T 4a74_A          180 QA  181 (231)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.18  E-value=4.9e-11  Score=122.56  Aligned_cols=62  Identities=11%  Similarity=-0.049  Sum_probs=44.2

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHH----HHHHHHHHh-cCcEEEEEecCcchhh
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE----GSMYEYCRE-VGITLFTVSHRKSLWT  295 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~----~~i~~~l~~-~~~TiIiitH~l~~~~  295 (298)
                      +++|+++++ ++.+...+.+|+++|||||++|+|+...    ..+.+.+.+ .|+|+|++||+.++..
T Consensus       668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~  734 (800)
T 1wb9_A          668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  734 (800)
T ss_dssp             --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH
Confidence            356777765 4445556899999999999888876432    234455555 4899999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.14  E-value=2.6e-11  Score=113.80  Aligned_cols=48  Identities=15%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        244 AMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       244 aiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      +|||||.++|+++++||||   |.++.+.+.+... .|.|+|+++|+.+.+.
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~~  235 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAAK  235 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHHH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHHH
Confidence            9999999999999999999   7888777777654 4999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.14  E-value=1.6e-11  Score=112.79  Aligned_cols=136  Identities=15%  Similarity=0.108  Sum_probs=89.5

Q ss_pred             CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccC-----------------CCcEEEE
Q psy11400        114 GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPP-----------------RGKLFYV  172 (298)
Q Consensus       114 ~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~-----------------r~~i~~v  172 (298)
                      +|++++|+        |||  ||  +++.       +    +++++|++|+|....                 +..++|+
T Consensus       101 ~g~vi~lv--------G~nGsGKTTll~~-------L----agll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v  161 (304)
T 1rj9_A          101 KGRVVLVV--------GVNGVGKTTTIAK-------L----GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI  161 (304)
T ss_dssp             SSSEEEEE--------CSTTSSHHHHHHH-------H----HHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEE
T ss_pred             CCeEEEEE--------CCCCCcHHHHHHH-------H----HHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEE
Confidence            78999999        999  99  8888       7    999999999874210                 2358999


Q ss_pred             cCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHh
Q psy11400        173 PQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFY  250 (298)
Q Consensus       173 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~  250 (298)
                      +|++.+++ .++++|+.++..      .              +.+. +++..+..+...   ..++..++||++||||++
T Consensus       162 ~q~~~~~p~~~v~~~v~~~~~------~--------------~~d~~llDt~G~~~~~~---~~~~eLs~~r~~iaRal~  218 (304)
T 1rj9_A          162 QGPEGTDSAALAYDAVQAMKA------R--------------GYDLLFVDTAGRLHTKH---NLMEELKKVKRAIAKADP  218 (304)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHH------H--------------TCSEEEECCCCCCTTCH---HHHHHHHHHHHHHHHHCT
T ss_pred             EeCCCCCHHHHHHHHHHHHHh------C--------------CCCEEEecCCCCCCchH---HHHHHHHHHHHHHHHhhc
Confidence            99986654 477787764310      0              1111 111111111111   123445589999999999


Q ss_pred             cCCC--EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        251 HRPQ--FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       251 ~~P~--iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      .+|+  ++.|| |+++.+  ....+.++.++.+.|+|++||.....
T Consensus       219 ~~P~~~lLvLD-a~t~~~--~~~~~~~~~~~~~~t~iivTh~d~~a  261 (304)
T 1rj9_A          219 EEPKEVWLVLD-AVTGQN--GLEQAKKFHEAVGLTGVIVTKLDGTA  261 (304)
T ss_dssp             TCCSEEEEEEE-TTBCTH--HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred             CCCCeEEEEEc-HHHHHH--HHHHHHHHHHHcCCcEEEEECCcccc
Confidence            9999  77778 666654  33344444445689999999986543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.13  E-value=3.9e-12  Score=119.03  Aligned_cols=130  Identities=14%  Similarity=0.040  Sum_probs=80.0

Q ss_pred             ceeee-eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc--ccCC----ce-eeccC-----C
Q psy11400        104 SFFDY-MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW--PLFG----GT-VTKPP-----R  166 (298)
Q Consensus       104 ~l~~i-sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~--~~~~----G~-i~~~~-----r  166 (298)
                      .|+++ ++.|++|++++|+        |||  ||  |++.       +    ++.+  +|+.    |+ +....     +
T Consensus       119 ~LD~lL~ggi~~G~i~~I~--------G~~GsGKTTL~~~-------l----~~~~~~~~~~Gg~~G~vi~i~~e~~~~~  179 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVF--------GEFGSGKTQLAHT-------L----AVMVQLPPEEGGLNGSVIWIDTENTFRP  179 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEE--------ESTTSSHHHHHHH-------H----HHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred             HHHHHhcCCCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence            45554 6899999999999        999  99  7776       5    5555  4554    44 22111     1


Q ss_pred             CcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHH
Q psy11400        167 GKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA  246 (298)
Q Consensus       167 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiA  246 (298)
                      +++++++|++.++..++.+|+.+...                                         .-|.+|+|++.++
T Consensus       180 ~~i~~i~q~~~~~~~~v~~ni~~~~~-----------------------------------------~~~~~~~~~l~~~  218 (349)
T 1pzn_A          180 ERIREIAQNRGLDPDEVLKHIYVARA-----------------------------------------FNSNHQMLLVQQA  218 (349)
T ss_dssp             HHHHHHHHTTTCCHHHHGGGEEEEEC-----------------------------------------CSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHhhCEEEEec-----------------------------------------CChHHHHHHHHHH
Confidence            23444444443333334444333210                                         0145566666666


Q ss_pred             HHHh-------cCCCEEEEeccccCCCHHH------------HHHHHH----HHHhcCcEEEEEecCcch
Q psy11400        247 RLFY-------HRPQFAILDECTSAVSVDV------------EGSMYE----YCREVGITLFTVSHRKSL  293 (298)
Q Consensus       247 RaL~-------~~P~iliLDEPTs~LD~~~------------~~~i~~----~l~~~~~TiIiitH~l~~  293 (298)
                      ++++       .+|+++|+||||+++|+..            ...+..    +.++.++|+|+++|....
T Consensus       219 ~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~  288 (349)
T 1pzn_A          219 EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR  288 (349)
T ss_dssp             HHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred             HHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc
Confidence            6666       7899999999999998852            223333    233458999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.05  E-value=4.1e-12  Score=109.01  Aligned_cols=126  Identities=16%  Similarity=0.075  Sum_probs=83.6

Q ss_pred             CcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---------cCCCcEEEEcCcCCCCCC
Q psy11400        115 ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---------PPRGKLFYVPQRPYMTLG  181 (298)
Q Consensus       115 g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---------~~r~~i~~v~Q~~~l~~~  181 (298)
                      |++++|+        |||  ||  |+++       +    +|+++ ++| +..         ..+++++|++|+.   .+
T Consensus         1 G~~i~i~--------G~nG~GKTTll~~-------l----~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g   56 (189)
T 2i3b_A            1 ARHVFLT--------GPPGVGKTTLIHK-------A----SEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SG   56 (189)
T ss_dssp             CCCEEEE--------SCCSSCHHHHHHH-------H----HHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TS
T ss_pred             CCEEEEE--------CCCCChHHHHHHH-------H----Hhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---cc
Confidence            7899999        999  99  8888       7    77777 777 532         2467799999986   22


Q ss_pred             CHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH-HHHH---HHhcCCCEEE
Q psy11400        182 TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV-AMAR---LFYHRPQFAI  257 (298)
Q Consensus       182 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl-aiAR---aL~~~P~ili  257 (298)
                      + ++++....       .              ...+ ...   -.....++..+|+|||+++ ++++   |++.+|+++|
T Consensus        57 ~-~~~l~~~~-------~--------------~~~~-~~~---~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvli  110 (189)
T 2i3b_A           57 T-RGPLSRVG-------L--------------EPPP-GKR---ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV  110 (189)
T ss_dssp             C-EEEEEECC-------C--------------CCCS-SSC---CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEE
T ss_pred             c-eehhhccc-------c--------------cCCc-ccc---ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEE
Confidence            1 11111000       0              0000 000   0011123567999999998 4455   6899999999


Q ss_pred             Eec--cccCCCHHHHHHHHHHHHhcCcEEE----EEecCc
Q psy11400        258 LDE--CTSAVSVDVEGSMYEYCREVGITLF----TVSHRK  291 (298)
Q Consensus       258 LDE--PTs~LD~~~~~~i~~~l~~~~~TiI----iitH~l  291 (298)
                      |||  ||..+|....+.+.++++.. .++|    .++||.
T Consensus       111 lDE~g~~~~~~~~~~~~l~~~l~~~-~~~ilgti~vsh~~  149 (189)
T 2i3b_A          111 IDEIGKMELFSQLFIQAVRQTLSTP-GTIILGTIPVPKGK  149 (189)
T ss_dssp             ECCCSTTTTTCSHHHHHHHHHHHCS-SCCEEEECCCCCSS
T ss_pred             EeCCCccccccHHHHHHHHHHHhCC-CcEEEEEeecCCCC
Confidence            999  89989999999999998864 3444    344986

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.01  E-value=8.5e-10  Score=95.24  Aligned_cols=58  Identities=10%  Similarity=0.066  Sum_probs=46.0

Q ss_pred             CCChhHHHHHHHHHHHhcCCC--EEEEeccccCC--CHHHHHHHHHHH----HhcCcEEEEEecCc
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQ--FAILDECTSAV--SVDVEGSMYEYC----REVGITLFTVSHRK  291 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~--iliLDEPTs~L--D~~~~~~i~~~l----~~~~~TiIiitH~l  291 (298)
                      ..|.++.++...+.+...+|+  ++++||||+.+  |+.....+.+.+    ++.++|+|+++|..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            459999999888888888999  99999999888  876555555444    44589999999998

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.00  E-value=1.6e-12  Score=130.09  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=82.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeee----------eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDY----------MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMT  145 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~i----------sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~  145 (298)
                      .+.++|+++.|+....+       +++.+          +|+++.   ++|+        |||  ||  |+++       
T Consensus        10 ~i~~~~l~~~~~~~~r~-------ll~~id~l~~~gv~~~l~lp~---iaIv--------G~nGsGKSTLL~~-------   64 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRP-------CIDLIDSLRALGVEQDLALPA---IAVI--------GDQSSGKSSVLEA-------   64 (608)
T ss_dssp             ----------CHHHHHH-------HHHHHHHHHHHSCCSSCCCCC---EECC--------CCTTSCHHHHHHH-------
T ss_pred             hhhhhhhhHHHHHHHHH-------HHHHHHHHHhCCCCCcccCCe---EEEE--------CCCCChHHHHHHH-------
Confidence            47889999998532211       44433          366665   9999        999  99  9999       


Q ss_pred             ccccccccccc-CCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHH
Q psy11400        146 LGTLRDQLWPL-FGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEY  209 (298)
Q Consensus       146 l~~~~~~l~~~-~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~  209 (298)
                      +    .|+..| ++|.|+.              ..++.++|+||++.+++ .|+++|+.++..                 
T Consensus        65 I----~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~-----------------  123 (608)
T 3szr_A           65 L----SGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN-----------------  123 (608)
T ss_dssp             H----HSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH-----------------
T ss_pred             H----hCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH-----------------
Confidence            8    888877 7888642              13457999999987654 578887754210                 


Q ss_pred             HHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEecc------ccCCCHHHHHHHHHHHHh----
Q psy11400        210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDEC------TSAVSVDVEGSMYEYCRE----  279 (298)
Q Consensus       210 l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEP------Ts~LD~~~~~~i~~~l~~----  279 (298)
                        .++..               ...+|   ++++.++.+....|+++++|||      |++||+.....+.+++++    
T Consensus       124 --~~~~~---------------~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~  183 (608)
T 3szr_A          124 --AIAGE---------------GMGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR  183 (608)
T ss_dssp             --HHHCS---------------SSCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS
T ss_pred             --HhcCC---------------ccccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc
Confidence              00000               00011   1222223333458999999999      999999888888777665    


Q ss_pred             -cCcEEEEEecCcchh
Q psy11400        280 -VGITLFTVSHRKSLW  294 (298)
Q Consensus       280 -~~~TiIiitH~l~~~  294 (298)
                       .+.++++++|+++.+
T Consensus       184 ~~~iil~vvt~~~d~a  199 (608)
T 3szr_A          184 QETISLVVVPSNVDIA  199 (608)
T ss_dssp             SSCCEEEEEESSSCTT
T ss_pred             CCCCceEEEeccchhc
Confidence             268899999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.84  E-value=1e-08  Score=87.98  Aligned_cols=59  Identities=8%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             CCChhH--HHHHHHHHHHhcC-CCEEEEeccccCCCHHH--------HHH----HHHHHHhcCcEEEEEecCcc
Q psy11400        234 VLSGGE--KQRVAMARLFYHR-PQFAILDECTSAVSVDV--------EGS----MYEYCREVGITLFTVSHRKS  292 (298)
Q Consensus       234 ~LSgGq--kQRlaiARaL~~~-P~iliLDEPTs~LD~~~--------~~~----i~~~l~~~~~TiIiitH~l~  292 (298)
                      .+|+++  +|+++.+++++.+ |+++|+||||+.+|+..        ...    +.++.++.++|+|+++|...
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~  157 (220)
T 2cvh_A           84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF  157 (220)
T ss_dssp             CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence            455554  6788899999986 99999999999998632        122    33344456999999999765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.83  E-value=3.3e-11  Score=110.05  Aligned_cols=122  Identities=11%  Similarity=0.017  Sum_probs=80.3

Q ss_pred             eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHc
Q psy11400        113 RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI  188 (298)
Q Consensus       113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~  188 (298)
                      +++.+++|+        |+|  ||  |.+.       |    .+++.+. |    ..++.+.+|+|+++++..+.++|+.
T Consensus        29 ~~~~ii~I~--------G~sGsGKSTla~~-------L----~~~l~~~-g----~~~~~~~iv~~D~f~~~~~~~~~l~   84 (290)
T 1odf_A           29 KCPLFIFFS--------GPQGSGKSFTSIQ-------I----YNHLMEK-Y----GGEKSIGYASIDDFYLTHEDQLKLN   84 (290)
T ss_dssp             CSCEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHH-H----GGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred             CCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHhhhc-C----CCCceEEEeccccccCChHHHHHHh
Confidence            456789999        999  99  8777       6    6665442 1    0133466779999999889999987


Q ss_pred             cCCcchhh-----hhcCCCHHHHHHHHHHcCCchhhhhcCCcccc-------cccCCCCChhHHHHHHHH--HHHhcCCC
Q psy11400        189 YPHTKEDM-----IQKGITDADLTEYLQKVQLGYILNREKGWDTV-------ADWIDVLSGGEKQRVAMA--RLFYHRPQ  254 (298)
Q Consensus       189 ~~~~~~~~-----~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~-------~~~~~~LSgGqkQRlaiA--RaL~~~P~  254 (298)
                      ++......     .....+.+.+.+.++.+.-        |+++.       -.+...+||||+||+++|  +++  +|+
T Consensus        85 ~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~--------g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~  154 (290)
T 1odf_A           85 EQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFN--------NNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVD  154 (290)
T ss_dssp             HHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC--------------CCEEEECCEETTHHHHTCEECSSCEEEES--SCS
T ss_pred             ccccccchhhhccCcchhHHHHHHHHHHHhhc--------cCccccCcceeeccCccccCCccccccccccceEc--CCC
Confidence            64210000     0112234555566655432        22211       123568999999999997  555  999


Q ss_pred             EEEEeccccCCCHH
Q psy11400        255 FAILDECTSAVSVD  268 (298)
Q Consensus       255 iliLDEPTs~LD~~  268 (298)
                      |+|+||+|+++|+.
T Consensus       155 IlIlEG~~~~ld~~  168 (290)
T 1odf_A          155 IFILEGWFLGFNPI  168 (290)
T ss_dssp             EEEEEESSTTCCCC
T ss_pred             EEEEeCccccCCcc
Confidence            99999999999974

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.80  E-value=7.9e-12  Score=117.33  Aligned_cols=68  Identities=13%  Similarity=-0.055  Sum_probs=48.1

Q ss_pred             ceeeeeEEEeC--CcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC----ceeecc---------
Q psy11400        104 SFFDYMFGVRG--ALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG----GTVTKP---------  164 (298)
Q Consensus       104 ~l~~isl~i~~--g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~----G~i~~~---------  164 (298)
                      +...++++|.+  |++++|+        |+|  ||  |+++       |    +|+++|++    |++...         
T Consensus       157 ~~~~v~~~v~~~lg~k~~Iv--------G~nGsGKSTLlk~-------L----~gl~~~~~~~e~G~i~i~~~~~~~~~~  217 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAIL--------GGESSGKSVLVNK-------L----AAVFNTTSAWEYGREFVFEKLGGDEQA  217 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEE--------CCTTSHHHHHHHH-------H----HHHTTCEEECCTTHHHHHHSSSSCTTS
T ss_pred             ChhhCCHHHHHhhhCeEEEE--------CCCCCCHHHHHHH-------H----HHHhCCCcchhhHHHHHHhhcCCCccc
Confidence            34679999999  9999999        999  99  9999       8    89988888    765321         


Q ss_pred             --CC--CcEEEEcCcCCCCCCCHHHHHccC
Q psy11400        165 --PR--GKLFYVPQRPYMTLGTLRDQVIYP  190 (298)
Q Consensus       165 --~r--~~i~~v~Q~~~l~~~tv~eni~~~  190 (298)
                        ..  .+|++++|++.++..|+++|+.+.
T Consensus       218 ~~~~~~~~I~~~~q~~~~~~~t~~~nl~~~  247 (365)
T 1lw7_A          218 MQYSDYPQMALGHQRYIDYAVRHSHKIAFI  247 (365)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHHHhccCCEEEE
Confidence              00  225566665554455666665543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.78  E-value=2e-09  Score=101.47  Aligned_cols=109  Identities=16%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC-Cceeecc-------CCCcEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF-GGTVTKP-------PRGKLFY  171 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~-~G~i~~~-------~r~~i~~  171 (298)
                      ++++++  +++|+.++|+        |||  ||  ++++       +    .++++|. +|+|...       .+..+++
T Consensus       127 ~l~~l~--~~~g~~i~iv--------G~~GsGKTTll~~-------l----~~~~~~~~~g~I~~~e~~~e~~~~~~~~~  185 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVT--------GPTGSGKSTTIAS-------M----IDYINQTKSYHIITIEDPIEYVFKHKKSI  185 (372)
T ss_dssp             SHHHHT--TSSSEEEEEE--------CSSSSSHHHHHHH-------H----HHHHHHHSCCEEEEEESSCCSCCCCSSSE
T ss_pred             HHHHHh--hcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhcCcCCCcEEEEecccHhhhhccCceE
Confidence            566655  7899999999        999  99  8888       7    8888887 7887321       1222333


Q ss_pred             EcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhc
Q psy11400        172 VPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH  251 (298)
Q Consensus       172 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~  251 (298)
                      |+|..                                    ++++               +..|      +.+|+++|..
T Consensus       186 v~Q~~------------------------------------~g~~---------------~~~~------~~~l~~~L~~  208 (372)
T 2ewv_A          186 VNQRE------------------------------------VGED---------------TKSF------ADALRAALRE  208 (372)
T ss_dssp             EEEEE------------------------------------BTTT---------------BSCS------HHHHHHHTTS
T ss_pred             EEeee------------------------------------cCCC---------------HHHH------HHHHHHHhhh
Confidence            33320                                    1111               1234      4699999999


Q ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        252 RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       252 ~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      +|+++++|||+   |++....+.+.. ..|.++++++|..+..
T Consensus       209 ~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~~~  247 (372)
T 2ewv_A          209 DPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTAI  247 (372)
T ss_dssp             CCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCSHH
T ss_pred             CcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcchHH
Confidence            99999999999   777655555544 3489999999987643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.64  E-value=1.8e-09  Score=101.28  Aligned_cols=128  Identities=12%  Similarity=-0.062  Sum_probs=87.2

Q ss_pred             EEeeeeEe---cCCCCCCCCCCcccce---------eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccc
Q psy11400         82 GRLGITLG---LRSGGLGFDSRWGRSF---------FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMT  145 (298)
Q Consensus        82 ~~~~v~~~---~~~~~~~~~~~~~~~l---------~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~  145 (298)
                      .|++|+|+   |+....+       +|         +++||.+++|+.++|+        |||  ||  |+++       
T Consensus       137 ~f~~v~f~~~~Y~~~~~~-------vL~~~~~~~~~~~l~~~i~~G~~i~iv--------G~sGsGKSTll~~-------  194 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQE-------LLALKEAGDYMSFLRRAVQLERVIVVA--------GETGSGKTTLMKA-------  194 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHH-------HHHHHHHTCHHHHHHHHHHTTCCEEEE--------ESSSSCHHHHHHH-------
T ss_pred             CcCccccccccccchhHH-------HHhhhhhHHHHHHHHHHHhcCCEEEEE--------CCCCCCHHHHHHH-------
Confidence            78888888   7531111       55         9999999999999999        999  99  9999       


Q ss_pred             cccccccccccCCceeecc---------CCCcEEEEc-CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCC
Q psy11400        146 LGTLRDQLWPLFGGTVTKP---------PRGKLFYVP-QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL  215 (298)
Q Consensus       146 l~~~~~~l~~~~~G~i~~~---------~r~~i~~v~-Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  215 (298)
                      +    .++++|++|.|+..         .++.++|++ |++.+                                     
T Consensus       195 l----~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------------------------------------  233 (361)
T 2gza_A          195 L----MQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------------------------------------  233 (361)
T ss_dssp             H----HTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------------------------------------
T ss_pred             H----HhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-------------------------------------
Confidence            8    99999999988542         123344554 33210                                     


Q ss_pred             chhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       216 ~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                                        .++++..++-.|+.++..+|+.+++||++.+   +..+ +.+.+.....|++.++|..+..
T Consensus       234 ------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~~~  290 (361)
T 2gza_A          234 ------------------EENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGSCE  290 (361)
T ss_dssp             -----------------------CCHHHHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSSHH
T ss_pred             ------------------ccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCCHH
Confidence                              0123445788889999999999999999962   3322 3333333345789999987643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.62  E-value=1.1e-09  Score=95.95  Aligned_cols=119  Identities=13%  Similarity=0.045  Sum_probs=73.9

Q ss_pred             eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc--CCceeec---cC----CCcEEEEc
Q psy11400        107 DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL--FGGTVTK---PP----RGKLFYVP  173 (298)
Q Consensus       107 ~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~--~~G~i~~---~~----r~~i~~v~  173 (298)
                      .-.-..++|++++|+        |||  ||  |+++       +    .|+.+|  ..|.+..   +.    +..++|+|
T Consensus         8 ~~~~~~~~G~ii~l~--------GpsGsGKSTLlk~-------L----~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~f   68 (219)
T 1s96_A            8 HHHHHMAQGTLYIVS--------APSGAGKSSLIQA-------L----LKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFF   68 (219)
T ss_dssp             -------CCCEEEEE--------CCTTSCHHHHHHH-------H----HHHSCTTTEEECCCEECSCCCTTCCBTTTBEE
T ss_pred             cccccCCCCcEEEEE--------CCCCCCHHHHHHH-------H----hccCCCCceEEEEEecCCCCCcccccCceEEE
Confidence            334567899999999        999  99  9998       7    788775  5666532   11    23577888


Q ss_pred             CcCCCCCC-CH----HHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHH
Q psy11400        174 QRPYMTLG-TL----RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       174 Q~~~l~~~-tv----~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARa  248 (298)
                      |++..|.. ++    .||+.+.                                          ..+.|-.+++   ++.
T Consensus        69 q~~~~f~~~~~~~~f~E~~~~~------------------------------------------~~~yg~~~~~---v~~  103 (219)
T 1s96_A           69 VNHDEFKEMISRDAFLEHAEVF------------------------------------------GNYYGTSREA---IEQ  103 (219)
T ss_dssp             CCHHHHHHHHHTTCEEEEEEET------------------------------------------TEEEEEEHHH---HHH
T ss_pred             CCHHHHHHHHhcCHHHHHHHHH------------------------------------------hccCCCCHHH---HHH
Confidence            87633211 11    1111110                                          0011111222   344


Q ss_pred             HhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        249 FYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      ++..++++|||     ||+.....+.+.+.+ ++||++++|+++.+.
T Consensus       104 ~l~~G~illLD-----LD~~~~~~i~~~l~~-~~tI~i~th~~~~l~  144 (219)
T 1s96_A          104 VLATGVDVFLD-----IDWQGAQQIRQKMPH-ARSIFILPPSKIELD  144 (219)
T ss_dssp             HHTTTCEEEEE-----CCHHHHHHHHHHCTT-CEEEEEECSSHHHHH
T ss_pred             HHhcCCeEEEE-----ECHHHHHHHHHHccC-CEEEEEECCCHHHHH
Confidence            55668999999     999999999998874 899999999988654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.57  E-value=2.2e-10  Score=96.71  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=64.4

Q ss_pred             cEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC---CceeeccC--------------C-CcEE---
Q psy11400        116 LNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF---GGTVTKPP--------------R-GKLF---  170 (298)
Q Consensus       116 ~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~---~G~i~~~~--------------r-~~i~---  170 (298)
                      ++++|+        |+|  ||  |+++       +    .+++++.   .|.|....              | ++++   
T Consensus         3 ~~v~Iv--------G~SGsGKSTL~~~-------L----~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~   63 (171)
T 2f1r_A            3 LILSIV--------GTSDSGKTTLITR-------M----MPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADV   63 (171)
T ss_dssp             CEEEEE--------ESCHHHHHHHHHH-------H----HHHHHHTTCCEEEEEC------------CHHHHHHHHTCEE
T ss_pred             eEEEEE--------CCCCCCHHHHHHH-------H----HHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCce
Confidence            578999        999  99  8888       7    8888887   67764211              1 2345   


Q ss_pred             -EEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccccCCCCChhHHHHHHHHHH
Q psy11400        171 -YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       171 -~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~~~~~LSgGqkQRlaiARa  248 (298)
                       +++|++++|       +.          . ...+ .     .+++.+++.+ ..|+|+....+  |||||+||++||||
T Consensus        64 ~~~~~~~~~~-------i~----------~-~~~~-~-----~a~l~~~i~~~l~g~dt~i~Eg--lSgGq~qri~lARa  117 (171)
T 2f1r_A           64 VIASPVKLAF-------IR----------R-VSEE-E-----GNDLDWIYERYLSDYDLVITEG--FSKAGKDRIVVVKK  117 (171)
T ss_dssp             EEECSSEEEE-------EE----------E-CCHH-H-----HTCHHHHHHHHTTTCSEEEEES--CGGGCCCEEEECSS
T ss_pred             EEECCCcEEE-------Ee----------c-CChh-h-----hhCHHHHHHhhCCCCCEEEECC--cCCCCCcEEEEEec
Confidence             667766543       00          0 0111 1     4455565554 33788876543  99999999999999


Q ss_pred             HhcCCCEE
Q psy11400        249 FYHRPQFA  256 (298)
Q Consensus       249 L~~~P~il  256 (298)
                      ++.+|++.
T Consensus       118 ll~~p~i~  125 (171)
T 2f1r_A          118 PEEVEHFR  125 (171)
T ss_dssp             GGGGGGGC
T ss_pred             ccCCCccC
Confidence            99999873

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.55  E-value=7.9e-09  Score=98.91  Aligned_cols=174  Identities=16%  Similarity=0.086  Sum_probs=99.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcE--EEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALN--LLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~--~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+++++ ++.|+  ..        .++++||++++|++  ++|+        |+|  ||  |+++       |    .|+
T Consensus        16 ~l~~~~-~~~y~--~~--------~L~~vsl~i~~Gei~~vaLv--------G~nGaGKSTLln~-------L----~G~   65 (427)
T 2qag_B           16 TVPLAG-HVGFD--SL--------PDQLVNKSVSQGFCFNILCV--------GETGLGKSTLMDT-------L----FNT   65 (427)
T ss_dssp             -CCCCC-CC-CC------------CHHHHHHSCC-CCEEEEEEE--------CSTTSSSHHHHHH-------H----HTS
T ss_pred             eEEEee-EEEEC--Ce--------ecCCCceEecCCCeeEEEEE--------CCCCCCHHHHHHH-------H----hCc
Confidence            355666 66673  22        38999999999999  9999        999  99  9998       6    554


Q ss_pred             cccCCce-ee----ccCCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcC----CCHHHHHHHHHHc-CCchhhhhc
Q psy11400        154 WPLFGGT-VT----KPPRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKG----ITDADLTEYLQKV-QLGYILNRE  222 (298)
Q Consensus       154 ~~~~~G~-i~----~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~----~~~~~i~~~l~~~-~l~~~~~~~  222 (298)
                      .  ..|. +.    ...++.++|++|++.++ ..|+.||+.++..........    .-...+.+++... ++..-+  .
T Consensus        66 ~--l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l--~  141 (427)
T 2qag_B           66 K--FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVL--H  141 (427)
T ss_dssp             C--C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCC--C
T ss_pred             c--ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhh--c
Confidence            2  1221 11    01134699999998765 469999998875321100000    0012333444433 322100  0


Q ss_pred             CCcccc--------cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecC
Q psy11400        223 KGWDTV--------ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHR  290 (298)
Q Consensus       223 ~g~d~~--------~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~  290 (298)
                      ...|..        .+....|+...   +.++++|..+++++++|+|+..|.+.....+.+.++    ..|.+|+.++.+
T Consensus       142 ~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          142 TYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             CSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             ccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            001111        11123566655   799999999999999999999998876665555444    358888888764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.50  E-value=2.1e-09  Score=100.83  Aligned_cols=107  Identities=13%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc-cCCceeecc--------CCCcEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP-LFGGTVTKP--------PRGKLF  170 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~-~~~G~i~~~--------~r~~i~  170 (298)
                      -++++++. .+|++++|+        |+|  ||  |+++       |    .|..+ +..|+|...        .+..++
T Consensus       205 gl~~L~~~-~~G~~~~lv--------G~sG~GKSTLln~-------L----~g~~~~~~~G~I~~~~G~g~~tt~~~~i~  264 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFA--------GQSGVGKSSLLNA-------L----LGLQNEILTNDVSNVSGLGQHTTTAARLY  264 (358)
T ss_dssp             THHHHHHH-HTTSEEEEE--------CCTTSSHHHHHHH-------H----HCCSSCCCCC-------------CCCEEE
T ss_pred             CHHHHHHh-cCCCEEEEE--------CCCCccHHHHHHH-------H----hccccccccCCccccCCCCccceEEEEEE
Confidence            46777775 489999999        999  99  9999       7    78887 888887532        345799


Q ss_pred             EEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHH----HHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHH
Q psy11400        171 YVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDAD----LTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAM  245 (298)
Q Consensus       171 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~----i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlai  245 (298)
                      ++||+++++. .+++++..+.          ...++    +.++++.+++.++.+.         ...+|| ||+||++|
T Consensus       265 ~v~q~~~l~dtpgv~e~~l~~----------l~~~e~~~~~~e~l~~~gl~~f~~~---------~~~~lS-G~~~r~al  324 (358)
T 2rcn_A          265 HFPHGGDVIDSPGVREFGLWH----------LEPEQITQGFVEFHDYLGHCKYRDC---------KHDADP-GCAIREAV  324 (358)
T ss_dssp             ECTTSCEEEECHHHHTCCCCC----------CCHHHHHHTSGGGGGGTTCSSSTTC---------CSSSCT-TCHHHHHH
T ss_pred             EECCCCEecCcccHHHhhhcC----------CCHHHHHHHHHHHHHHcCCchhcCC---------CcccCC-HHHHHHHH
Confidence            9999987654 3777742221          22222    3345555565544443         357899 99999999


Q ss_pred             HHHHh
Q psy11400        246 ARLFY  250 (298)
Q Consensus       246 ARaL~  250 (298)
                      |++++
T Consensus       325 a~gli  329 (358)
T 2rcn_A          325 ENGAI  329 (358)
T ss_dssp             HHTSS
T ss_pred             HhcCC
Confidence            98864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.46  E-value=2.4e-08  Score=95.42  Aligned_cols=153  Identities=16%  Similarity=0.068  Sum_probs=83.5

Q ss_pred             eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCC
Q psy11400        105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTL  180 (298)
Q Consensus       105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~  180 (298)
                      -++++|+++.|+.++|+        |++  ||  |++.       +    .+..+...+.........+++++++.. ..
T Consensus       147 ~~~i~lelk~g~~VgLV--------G~~gAGKSTLL~~-------L----sg~~~~i~~~~ftTl~p~~G~V~~~~~-~~  206 (416)
T 1udx_A          147 KRRLRLELMLIADVGLV--------GYPNAGKSSLLAA-------M----TRAHPKIAPYPFTTLSPNLGVVEVSEE-ER  206 (416)
T ss_dssp             EEEEEEEECCSCSEEEE--------CCGGGCHHHHHHH-------H----CSSCCEECCCTTCSSCCEEEEEECSSS-CE
T ss_pred             EeeeeeEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HcCCccccCcccceecceeeEEEecCc-ce
Confidence            47999999999999999        999  99  8888       5    444321111100112345777777541 01


Q ss_pred             CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q psy11400        181 GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDE  260 (298)
Q Consensus       181 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDE  260 (298)
                      .++.|...+......  ......... +.++  ..+.++...   |.......+||+|++|++++|++|+.+|.++++  
T Consensus       207 ~~l~DtpGli~~a~~--~~~L~~~fl-~~~e--ra~~lL~vv---Dls~~~~~~ls~g~~el~~la~aL~~~P~ILVl--  276 (416)
T 1udx_A          207 FTLADIPGIIEGASE--GKGLGLEFL-RHIA--RTRVLLYVL---DAADEPLKTLETLRKEVGAYDPALLRRPSLVAL--  276 (416)
T ss_dssp             EEEEECCCCCCCGGG--SCCSCHHHH-HHHT--SSSEEEEEE---ETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE--
T ss_pred             EEEEeccccccchhh--hhhhhHHHH-HHHH--HHHhhhEEe---CCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE--
Confidence            112221111100000  001111111 1111  111111110   100123457999999999999999999999999  


Q ss_pred             cccCCCHHHH---HHHHHHHHhcCcEEEEEec
Q psy11400        261 CTSAVSVDVE---GSMYEYCREVGITLFTVSH  289 (298)
Q Consensus       261 PTs~LD~~~~---~~i~~~l~~~~~TiIiitH  289 (298)
                        +.+|....   ..+.+.+++.+.+++.+|.
T Consensus       277 --NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          277 --NKVDLLEEEAVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             --ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred             --ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence              89987533   2333444445777776653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.44  E-value=5.5e-10  Score=94.25  Aligned_cols=129  Identities=13%  Similarity=-0.040  Sum_probs=72.6

Q ss_pred             EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---------CCCcEEEEcCcCC
Q psy11400        111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---------PRGKLFYVPQRPY  177 (298)
Q Consensus       111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---------~r~~i~~v~Q~~~  177 (298)
                      .+++|++++|+        |+|  ||  ++++       |    ++.  +..|.+...         .+..++|++|++.
T Consensus         5 ~i~~g~~i~l~--------G~~GsGKSTl~~~-------L----a~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~   63 (191)
T 1zp6_A            5 DDLGGNILLLS--------GHPGSGKSTIAEA-------L----ANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ   63 (191)
T ss_dssp             -CCTTEEEEEE--------ECTTSCHHHHHHH-------H----HTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH
T ss_pred             CCCCCeEEEEE--------CCCCCCHHHHHHH-------H----Hhc--cCCCeEEEcccchhhhhhcccccCCccchhh
Confidence            57899999999        999  99  8888       6    665  456654321         1223566666543


Q ss_pred             CCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400        178 MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAI  257 (298)
Q Consensus       178 l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~ili  257 (298)
                       ...++.+|+.+.....  ...+. ...++.++..+++..+..       ....+..+|+|++|++++||++.++|+++ 
T Consensus        64 -~~~~v~~~l~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~-------~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-  131 (191)
T 1zp6_A           64 -QNRMIMQIAADVAGRY--AKEGY-FVILDGVVRPDWLPAFTA-------LARPLHYIVLRTTAAEAIERCLDRGGDSL-  131 (191)
T ss_dssp             -HHHHHHHHHHHHHHHH--HHTSC-EEEECSCCCTTTTHHHHT-------TCSCEEEEEEECCHHHHHHHHHTTCTTSC-
T ss_pred             -hhHHHHHHHHHHHHHH--hccCC-eEEEeccCcHHHHHHHHh-------cCCCeEEEEecCCHHHHHHHHHhcCCCcc-
Confidence             2346666664321000  00000 000000000011111110       01124579999999999999999999876 


Q ss_pred             EeccccCCCHHHHHHHHHHHHh
Q psy11400        258 LDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       258 LDEPTs~LD~~~~~~i~~~l~~  279 (298)
                             +|+...+.+++.++.
T Consensus       132 -------ld~~~~~~~~~~~~~  146 (191)
T 1zp6_A          132 -------SDPLVVADLHSQFAD  146 (191)
T ss_dssp             -------CCHHHHHHHHHHTTC
T ss_pred             -------CCHHHHHHHHHHHhc
Confidence                   578777777776654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.42  E-value=1.6e-08  Score=98.28  Aligned_cols=141  Identities=13%  Similarity=0.096  Sum_probs=89.7

Q ss_pred             eeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc----------------
Q psy11400        105 FFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP----------------  164 (298)
Q Consensus       105 l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~----------------  164 (298)
                      -+++||++++|++++|+        |+|  ||  ++++       |    +|++++.+|+|...                
T Consensus       283 ~~~Isl~i~~GeVI~LV--------GpNGSGKTTLl~~-------L----Agll~~~~G~V~l~g~D~~r~aa~eQL~~~  343 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMV--------GVNGVGKTTTIGK-------L----ARQFEQQGKSVMLAAGDTFRAAAVEQLQVW  343 (503)
T ss_dssp             BCCCCCCSCTTEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHTTCCEEEECCCTTCHHHHHHHHHH
T ss_pred             CCCceeeccCCeEEEEE--------CCCcccHHHHHHH-------H----HHHhhhcCCeEEEecCcccchhhHHHHHHH
Confidence            46799999999999999        999  99  8888       7    89999999987531                


Q ss_pred             -CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHH
Q psy11400        165 -PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQR  242 (298)
Q Consensus       165 -~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQR  242 (298)
                       .+.+|+|++|++.++ ..++++|+.++..      ...+   + -+++.+|..         +...    .|-.-.+|+
T Consensus       344 ~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~------~~~D---v-VLIDTaGrl---------~~~~----~lm~EL~ki  400 (503)
T 2yhs_A          344 GQRNNIPVIAQHTGADSASVIFDAIQAAKA------RNID---V-LIADTAGRL---------QNKS----HLMEELKKI  400 (503)
T ss_dssp             HHHHTCCEECCSTTCCHHHHHHHHHHHHHH------TTCS---E-EEECCCCSC---------CCHH----HHHHHHHHH
T ss_pred             HHhcCceEEecccCcCHHHHHHHHHHHHHh------cCCC---E-EEEeCCCcc---------chhh----hHHHHHHHH
Confidence             134589999988654 4588888876421      0110   0 001111111         0000    111223488


Q ss_pred             HHHHHHHh-cCCC-EEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400        243 VAMARLFY-HRPQ-FAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH  289 (298)
Q Consensus       243 laiARaL~-~~P~-iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH  289 (298)
                      +.++|++. ..|. +++..+||++.|..  ..+..+.+..+.|.|++||
T Consensus       401 v~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK  447 (503)
T 2yhs_A          401 VRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK  447 (503)
T ss_dssp             HHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred             HHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence            88999774 4574 55555588886543  2333333446899999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.36  E-value=1.4e-09  Score=96.01  Aligned_cols=138  Identities=15%  Similarity=0.099  Sum_probs=76.9

Q ss_pred             CCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccc---cccccCCceeecc---C----CCcEEEEcCcCCCC
Q psy11400        114 GALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRD---QLWPLFGGTVTKP---P----RGKLFYVPQRPYMT  179 (298)
Q Consensus       114 ~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~---~l~~~~~G~i~~~---~----r~~i~~v~Q~~~l~  179 (298)
                      ++++++|+        |+|  ||  ++++       |    +   |+..++.|++...   .    ...+.+++|++.++
T Consensus        26 ~~~~i~l~--------G~~GsGKSTl~k~-------L----a~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~   86 (246)
T 2bbw_A           26 KLLRAVIL--------GPPGSGKGTVCQR-------I----AQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLV   86 (246)
T ss_dssp             CCCEEEEE--------CCTTSSHHHHHHH-------H----HHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             CCcEEEEE--------CCCCCCHHHHHHH-------H----HHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCC
Confidence            47899999        999  99  8888       7    6   7777787876431   1    12244566766554


Q ss_pred             C-CCHHHHHccCCc---chhh-h-hcCCCHHHHHHHHHHcCCch--hhhhcC--Ccccc-cccCCCCChhHHHHHHHHHH
Q psy11400        180 L-GTLRDQVIYPHT---KEDM-I-QKGITDADLTEYLQKVQLGY--ILNREK--GWDTV-ADWIDVLSGGEKQRVAMARL  248 (298)
Q Consensus       180 ~-~tv~eni~~~~~---~~~~-~-~~~~~~~~i~~~l~~~~l~~--~~~~~~--g~d~~-~~~~~~LSgGqkQRlaiARa  248 (298)
                      + .++.+++.....   .... . .......++..+......+-  +++.+.  .++.. ..++..|||    |+   ||
T Consensus        87 ~~~~v~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~a  159 (246)
T 2bbw_A           87 PDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YN  159 (246)
T ss_dssp             CHHHHHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cc
Confidence            3 477888754210   0000 0 01112222222221111110  000000  00111 124568999    66   78


Q ss_pred             H-hcCCCEEEEe----ccccCCCHHHHHHHHHHH
Q psy11400        249 F-YHRPQFAILD----ECTSAVSVDVEGSMYEYC  277 (298)
Q Consensus       249 L-~~~P~iliLD----EPTs~LD~~~~~~i~~~l  277 (298)
                      + +.+|++++||    |||+++|......+.+.+
T Consensus       160 l~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l  193 (246)
T 2bbw_A          160 LDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARL  193 (246)
T ss_dssp             TTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH
T ss_pred             cccCCCcccccccccccccccCCCCcHHHHHHHH
Confidence            8 9999999999    999999987665554443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.35  E-value=4.5e-08  Score=81.92  Aligned_cols=43  Identities=9%  Similarity=-0.107  Sum_probs=36.0

Q ss_pred             hcCCCEEEEecccc-CCCHHHHHHHHHHHHh---cCcEEEEEecCcc
Q psy11400        250 YHRPQFAILDECTS-AVSVDVEGSMYEYCRE---VGITLFTVSHRKS  292 (298)
Q Consensus       250 ~~~P~iliLDEPTs-~LD~~~~~~i~~~l~~---~~~TiIiitH~l~  292 (298)
                      +.+|++|+||||++ ++|+.....+.+++.+   .++++|++||...
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence            45999999999996 8999888888777653   4899999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.34  E-value=1.6e-07  Score=86.59  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=36.9

Q ss_pred             HhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcch
Q psy11400        249 FYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSL  293 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~  293 (298)
                      +..+|+++|+|||++ ||+.....+.+.+.+  .++++|++||+++.
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP  176 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence            788999999999999 999999999999886  37899999999763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.34  E-value=1.9e-09  Score=92.97  Aligned_cols=116  Identities=11%  Similarity=-0.024  Sum_probs=76.2

Q ss_pred             EeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHH
Q psy11400        112 VRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQV  187 (298)
Q Consensus       112 i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni  187 (298)
                      .++|++++|+        |||  ||  |+++       |    .+++++. |       ..+++|+++.+.+..+..+++
T Consensus        19 ~~~g~~v~I~--------G~sGsGKSTl~~~-------l----~~~~~~~-g-------~~~g~v~~d~~~~~~~~~~~~   71 (208)
T 3c8u_A           19 QPGRQLVALS--------GAPGSGKSTLSNP-------L----AAALSAQ-G-------LPAEVVPMDGFHLDNRLLEPR   71 (208)
T ss_dssp             CCSCEEEEEE--------CCTTSCTHHHHHH-------H----HHHHHHT-T-------CCEEEEESGGGBCCHHHHGGG
T ss_pred             CCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHhhc-C-------CceEEEecCCCcCCHHHHHHh
Confidence            5789999999        999  99  9998       8    8888765 4       358999999877665555554


Q ss_pred             ccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc-cccCCCCChhHHHHHHHH-HHHhcCCCEEEEeccc
Q psy11400        188 IYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV-ADWIDVLSGGEKQRVAMA-RLFYHRPQFAILDECT  262 (298)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~-~~~~~~LSgGqkQRlaiA-RaL~~~P~iliLDEPT  262 (298)
                      ..... .. .........+.+.+..+...+.      ++.. .+++..+|+||+||+++| ++++.++.++++|||.
T Consensus        72 ~~~~~-~~-~~~~~~~~~~~~~l~~l~~~~~------i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A           72 GLLPR-KG-APETFDFEGFQRLCHALKHQER------VIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             TCGGG-TT-SGGGBCHHHHHHHHHHHHHCSC------EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             ccccc-CC-CCchhhHHHHHHHHHHHhcCCc------eecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence            31100 00 0111233444444443322111      1111 224567899999999998 9999999999999984

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.33  E-value=2.3e-10  Score=106.46  Aligned_cols=72  Identities=11%  Similarity=-0.055  Sum_probs=57.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++|+++.|.. ..        +++++||++++|++++|+        |+|  ||  |++.       +    .|+++
T Consensus        29 ~ie~~~~~~~~~~-~~--------~l~~i~~~~~~g~~v~i~--------G~~GaGKSTLl~~-------l----~g~~~   80 (337)
T 2qm8_A           29 LAESRRADHRAAV-RD--------LIDAVLPQTGRAIRVGIT--------GVPGVGKSTTIDA-------L----GSLLT   80 (337)
T ss_dssp             HHTCSSHHHHHHH-HH--------HHHHHGGGCCCSEEEEEE--------CCTTSCHHHHHHH-------H----HHHHH
T ss_pred             HHeeCCcccccCh-HH--------HHHhCCcccCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHhhh
Confidence            3667788888842 23        899999999999999999        999  99  8888       7    88888


Q ss_pred             cCCceeec---------------cCCCcEEEEcCcCCCC
Q psy11400        156 LFGGTVTK---------------PPRGKLFYVPQRPYMT  179 (298)
Q Consensus       156 ~~~G~i~~---------------~~r~~i~~v~Q~~~l~  179 (298)
                      |++|++..               ..+.++++++|++.+|
T Consensus        81 ~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~  119 (337)
T 2qm8_A           81 AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF  119 (337)
T ss_dssp             HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred             hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence            88998731               1234689999998765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.16  E-value=2.9e-06  Score=69.42  Aligned_cols=41  Identities=10%  Similarity=0.184  Sum_probs=30.0

Q ss_pred             HhcCCCEEEEeccccCCCHHHHHHHHHHHH---hcCcE-EEEEecC
Q psy11400        249 FYHRPQFAILDECTSAVSVDVEGSMYEYCR---EVGIT-LFTVSHR  290 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD~~~~~~i~~~l~---~~~~T-iIiitH~  290 (298)
                      ++.+|++|++|||++ ++...++.+++++.   +.|++ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            356899999999998 55544666776654   34787 7888875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.16  E-value=8.1e-06  Score=70.68  Aligned_cols=60  Identities=13%  Similarity=0.225  Sum_probs=33.8

Q ss_pred             CCChhHHHH-HHHHHHHh--cCCCEEEEeccccCCCHH-------HH-----HHHHH----HHHhcCcEEEEEecCcch
Q psy11400        234 VLSGGEKQR-VAMARLFY--HRPQFAILDECTSAVSVD-------VE-----GSMYE----YCREVGITLFTVSHRKSL  293 (298)
Q Consensus       234 ~LSgGqkQR-laiARaL~--~~P~iliLDEPTs~LD~~-------~~-----~~i~~----~l~~~~~TiIiitH~l~~  293 (298)
                      ..+..+... +.-++.++  .+|+++++|||++.+|+.       .+     ..+..    +.++.++|||+++|....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~  176 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ  176 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence            345555433 33333443  589999999999999875       21     22222    333459999999996543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.15  E-value=4e-07  Score=84.31  Aligned_cols=132  Identities=10%  Similarity=0.032  Sum_probs=82.1

Q ss_pred             EEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc---C--------------CCcE
Q psy11400        111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP---P--------------RGKL  169 (298)
Q Consensus       111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~---~--------------r~~i  169 (298)
                      ..++|++++++        |||  ||  +++.       +    +++++|.+|+|...   .              +-.+
T Consensus       125 ~~~~g~vi~lv--------G~nGaGKTTll~~-------L----ag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv  185 (328)
T 3e70_C          125 KAEKPYVIMFV--------GFNGSGKTTTIAK-------L----ANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGV  185 (328)
T ss_dssp             SSCSSEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence            44789999999        999  99  8888       7    99999999987421   0              1236


Q ss_pred             EEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHH
Q psy11400        170 FYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMAR  247 (298)
Q Consensus       170 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiAR  247 (298)
                      .+++|...+++ .++++|+.++..      .              +.+. +++..+..+.       -..=..+.-.++|
T Consensus       186 ~~v~q~~~~~p~~~v~e~l~~~~~------~--------------~~d~vliDtaG~~~~-------~~~l~~eL~~i~r  238 (328)
T 3e70_C          186 KVIKHSYGADPAAVAYDAIQHAKA------R--------------GIDVVLIDTAGRSET-------NRNLMDEMKKIAR  238 (328)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHH------H--------------TCSEEEEEECCSCCT-------TTCHHHHHHHHHH
T ss_pred             eEEeccccCCHHHHHHHHHHHHHh------c--------------cchhhHHhhccchhH-------HHHHHHHHHHHHH
Confidence            68888876653 578888765310      0              0000 1111110000       0111223334899


Q ss_pred             HHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCc
Q psy11400        248 LFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRK  291 (298)
Q Consensus       248 aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l  291 (298)
                      ++..++.+++||.+|. .|  ....+..+.++.+.|+|++||--
T Consensus       239 al~~de~llvLDa~t~-~~--~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          239 VTKPNLVIFVGDALAG-NA--IVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcCCCEEEEeCcC
Confidence            9999999999996665 33  33334444445689999999954

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.12  E-value=2e-09  Score=103.00  Aligned_cols=120  Identities=18%  Similarity=0.075  Sum_probs=78.0

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---c------------
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---P------------  164 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---~------------  164 (298)
                      +|+++ +. ++|++++|+        |||  ||  ++++       +    .+++++.+|+|..   +            
T Consensus       158 ~L~~l-~~-~~ggii~I~--------GpnGSGKTTlL~a-------l----lg~l~~~~g~I~~~ed~ie~~~~~~~q~~  216 (418)
T 1p9r_A          158 NFRRL-IK-RPHGIILVT--------GPTGSGKSTTLYA-------G----LQELNSSERNILTVEDPIEFDIDGIGQTQ  216 (418)
T ss_dssp             HHHHH-HT-SSSEEEEEE--------CSTTSCHHHHHHH-------H----HHHHCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred             HHHHH-HH-hcCCeEEEE--------CCCCCCHHHHHHH-------H----HhhcCCCCCEEEEecccchhccCCcceEE
Confidence            56666 43 789999999        999  99  8888       7    8888888888642   1            


Q ss_pred             CCCcEEEEc---------CcCCCC--C-----CCHHHHHccCCcchhhh--hcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        165 PRGKLFYVP---------QRPYMT--L-----GTLRDQVIYPHTKEDMI--QKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       165 ~r~~i~~v~---------Q~~~l~--~-----~tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      .+.++++.+         |+|.+.  .     .|+.+++.+........  .+..+.....+.+..+++.... .     
T Consensus       217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-~-----  290 (418)
T 1p9r_A          217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-I-----  290 (418)
T ss_dssp             CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-H-----
T ss_pred             EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-H-----
Confidence            122345544         888642  1     37888876532100000  0111222334456777876543 1     


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEE
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAI  257 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~ili  257 (298)
                           +.+|||||+||  |||+|+.+|++..
T Consensus       291 -----~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          291 -----SSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             -----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             -----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence                 45899999999  9999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.10  E-value=8e-09  Score=95.16  Aligned_cols=47  Identities=17%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCc
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRK  291 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l  291 (298)
                      +||+||+||+..+++++.+|+++  |||         ..+.+.+++  .+.||+++||+.
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~  189 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD  189 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence            68999999999999999999988  999         334444333  479999999964

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.06  E-value=2.3e-09  Score=92.03  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=28.0

Q ss_pred             HHH-HHhcCCCEEEEeccccCCCHHHHHHHHHHHH
Q psy11400        245 MAR-LFYHRPQFAILDECTSAVSVDVEGSMYEYCR  278 (298)
Q Consensus       245 iAR-aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~  278 (298)
                      .|| +++.+|++++|||+|+++|.++++.+.+.+.
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~  150 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLA  150 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            566 7899999999999999999887777766543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.03  E-value=2.2e-05  Score=74.49  Aligned_cols=41  Identities=10%  Similarity=0.245  Sum_probs=28.6

Q ss_pred             cCCCEEEEeccccCCCHHHH------------HHHH----HHHHhcCcEEEEEecCc
Q psy11400        251 HRPQFAILDECTSAVSVDVE------------GSMY----EYCREVGITLFTVSHRK  291 (298)
Q Consensus       251 ~~P~iliLDEPTs~LD~~~~------------~~i~----~~l~~~~~TiIiitH~l  291 (298)
                      .+|+++++||||+.+|....            ..+.    ++.++.++|||+|+|..
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~  328 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV  328 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence            57999999999999986422            2233    33445699999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.99  E-value=1.8e-07  Score=85.55  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=72.6

Q ss_pred             EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---cC-----------CCcEEE
Q psy11400        110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---PP-----------RGKLFY  171 (298)
Q Consensus       110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---~~-----------r~~i~~  171 (298)
                      +.+.+|++++++        |||  ||  |+++       +    . +.+|..|+|..   ..           .+.+||
T Consensus       160 ~~~l~G~i~~l~--------G~sG~GKSTLln~-------l----~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~  219 (302)
T 2yv5_A          160 VDYLEGFICILA--------GPSGVGKSSILSR-------L----T-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSF  219 (302)
T ss_dssp             HHHTTTCEEEEE--------CSTTSSHHHHHHH-------H----H-SCCCCCSCC---------CCCCEEEEEETTTEE
T ss_pred             HhhccCcEEEEE--------CCCCCCHHHHHHH-------H----H-HhhCcccccccccCCCCCceeeEEEEEcCCCcE
Confidence            345679999999        999  99  8998       7    6 67778887753   10           125899


Q ss_pred             EcCcCCC------CCCCHHHHH--ccCCc------chhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCC
Q psy11400        172 VPQRPYM------TLGTLRDQV--IYPHT------KEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       172 v~Q~~~l------~~~tv~eni--~~~~~------~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LS  236 (298)
                      ++|.|.+      +..|+ +|+  .|+..      ...........+.+.++++.++|.+ ..++.         +..||
T Consensus       220 v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~---------~~~ls  289 (302)
T 2yv5_A          220 VGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY---------LKIIK  289 (302)
T ss_dssp             EESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH---------HHHTT
T ss_pred             EEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH---------HHHHH
Confidence            9999954      24578 888  45410      0000011123457889999999975 44442         56899


Q ss_pred             hhHHHHHHHHH
Q psy11400        237 GGEKQRVAMAR  247 (298)
Q Consensus       237 gGqkQRlaiAR  247 (298)
                      |.+++++.|||
T Consensus       290 ~~~~R~~~~~~  300 (302)
T 2yv5_A          290 VYLEEIKELCR  300 (302)
T ss_dssp             CCCTTHHHHSS
T ss_pred             HHHHHHHHHhc
Confidence            98899999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.92  E-value=5.5e-07  Score=74.69  Aligned_cols=78  Identities=12%  Similarity=-0.101  Sum_probs=59.2

Q ss_pred             EeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC
Q psy11400         83 RLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG  158 (298)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~  158 (298)
                      .+++++.|. +..        +++++||++++|++++|+        |||  ||  |+++       +    +|+. |++
T Consensus        10 ~~~~~~~~g-~~~--------~l~~vsl~i~~Ge~v~L~--------G~nGaGKTTLlr~-------l----~g~l-~~~   60 (158)
T 1htw_A           10 DEFSMLRFG-KKF--------AEILLKLHTEKAIMVYLN--------GDLGAGKTTLTRG-------M----LQGI-GHQ   60 (158)
T ss_dssp             SHHHHHHHH-HHH--------HHHHHHHCCSSCEEEEEE--------CSTTSSHHHHHHH-------H----HHHT-TCC
T ss_pred             CHHHHHHHH-HHH--------HHhccccccCCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhC-CCC
Confidence            345666663 223        899999999999999999        999  99  9999       8    8888 889


Q ss_pred             ceeeccCCC------cEEEEcCcCCCCCCCHHHHHcc
Q psy11400        159 GTVTKPPRG------KLFYVPQRPYMTLGTLRDQVIY  189 (298)
Q Consensus       159 G~i~~~~r~------~i~~v~Q~~~l~~~tv~eni~~  189 (298)
                      |+|..+...      .-.+++|++.++..|+.||+.+
T Consensus        61 G~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~   97 (158)
T 1htw_A           61 GNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEF   97 (158)
T ss_dssp             SCCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHH
T ss_pred             CeEEECCEeeeeeccCCCcceeccccccCCcHHHHHH
Confidence            987543110      0027899987777789898853

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.84  E-value=1.5e-08  Score=99.33  Aligned_cols=161  Identities=9%  Similarity=-0.001  Sum_probs=93.2

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc--------CCCcEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP--------PRGKLFY  171 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~--------~r~~i~~  171 (298)
                      +++++++.+++|+.++|+        |||  ||  ++++       +    .++++|++|.++..        ....+++
T Consensus       249 ~l~~l~~~v~~g~~i~I~--------GptGSGKTTlL~a-------L----~~~i~~~~giitied~~E~~~~~~~~v~~  309 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVV--------GETASGKTTTLNA-------I----MMFIPPDAKVVSIEDTREIKLYHENWIAE  309 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEE--------ESTTSSHHHHHHH-------H----GGGSCTTCCEEEEESSCCCCCCCSSEEEE
T ss_pred             HHHHHHHHHhCCCEEEEE--------CCCCCCHHHHHHH-------H----HhhCCCCCCEEEEcCcccccCCCCCeEEE
Confidence            778999999999999999        999  99  8888       7    88999999987531        1235677


Q ss_pred             EcCcCCCCC-CCHHHHHccCCc--chhhhhcCCCHHHHHHHHHHcCCc-------------hhhhh----cCC-------
Q psy11400        172 VPQRPYMTL-GTLRDQVIYPHT--KEDMIQKGITDADLTEYLQKVQLG-------------YILNR----EKG-------  224 (298)
Q Consensus       172 v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~i~~~l~~~~l~-------------~~~~~----~~g-------  224 (298)
                      +.|...... .+..+++.....  +....-......++..+++.+...             +.+++    +.+       
T Consensus       310 ~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~  389 (511)
T 2oap_1          310 VTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQ  389 (511)
T ss_dssp             ECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred             EeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHh
Confidence            777654221 366666543211  000000011111222233222110             01111    001       


Q ss_pred             -cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE--EecCcchhh
Q psy11400        225 -WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT--VSHRKSLWT  295 (298)
Q Consensus       225 -~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi--itH~l~~~~  295 (298)
                       ++........+|+||+||.++|.          + | |+|||+.....+++.+.+   .+.|+++  +||+++.+.
T Consensus       390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~  454 (511)
T 2oap_1          390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA  454 (511)
T ss_dssp             GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred             hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence             11111223468999999977651          2 7 999998765544443332   3788875  899998654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.83  E-value=4.1e-05  Score=69.59  Aligned_cols=136  Identities=12%  Similarity=0.013  Sum_probs=84.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      +.++++++.|..  .        . ++++|+  +|++++++        |++  ||  +...       +    ++++.+
T Consensus        77 ~~~~~l~~~~~~--~--------~-~~i~~~--~~~~i~i~--------g~~G~GKTT~~~~-------l----a~~~~~  124 (295)
T 1ls1_A           77 TVYEALKEALGG--E--------A-RLPVLK--DRNLWFLV--------GLQGSGKTTTAAK-------L----ALYYKG  124 (295)
T ss_dssp             HHHHHHHHHTTS--S--------C-CCCCCC--SSEEEEEE--------CCTTTTHHHHHHH-------H----HHHHHH
T ss_pred             HHHHHHHHHHCC--C--------C-ceeecC--CCeEEEEE--------CCCCCCHHHHHHH-------H----HHHHHH
Confidence            456778877742  1        2 568887  99999999        999  99  6666       6    787776


Q ss_pred             CCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCC
Q psy11400        157 FGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLS  236 (298)
Q Consensus       157 ~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LS  236 (298)
                      .+|++        .++-.++.-.  ...                   ..+....+..++..+..           +...+
T Consensus       125 ~~~~v--------~l~~~d~~~~--~~~-------------------~ql~~~~~~~~l~~~~~-----------~~~~~  164 (295)
T 1ls1_A          125 KGRRP--------LLVAADTQRP--AAR-------------------EQLRLLGEKVGVPVLEV-----------MDGES  164 (295)
T ss_dssp             TTCCE--------EEEECCSSCH--HHH-------------------HHHHHHHHHHTCCEEEC-----------CTTCC
T ss_pred             cCCeE--------EEecCCcccH--hHH-------------------HHHHHhcccCCeEEEEc-----------CCCCC
Confidence            66654        4444443100  000                   01112233334332110           11234


Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEecc-ccCCCHHHHHHHHHHHHh--cCcEEEEEe
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDEC-TSAVSVDVEGSMYEYCRE--VGITLFTVS  288 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEP-Ts~LD~~~~~~i~~~l~~--~~~TiIiit  288 (298)
                      ..+.+|.+++++...+++++|+||| ++++|......+.+..+.  ...+++++.
T Consensus       165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            4566899999998899999999999 999998877777665543  244544443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.81  E-value=6.5e-06  Score=75.40  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             eeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCH
Q psy11400        108 YMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTL  183 (298)
Q Consensus       108 isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv  183 (298)
                      ++|..++|++++++        |++  ||  ++..       +    ++.+.+.+|+        +.++..+++-  ...
T Consensus        97 ~~~~~~~~~vi~iv--------G~~GsGKTTl~~~-------L----A~~l~~~g~k--------V~lv~~D~~r--~~a  147 (306)
T 1vma_A           97 LNVPPEPPFVIMVV--------GVNGTGKTTSCGK-------L----AKMFVDEGKS--------VVLAAADTFR--AAA  147 (306)
T ss_dssp             CCCCSSSCEEEEEE--------CCTTSSHHHHHHH-------H----HHHHHHTTCC--------EEEEEECTTC--HHH
T ss_pred             CcccCCCCeEEEEE--------cCCCChHHHHHHH-------H----HHHHHhcCCE--------EEEEcccccc--HHH
Confidence            56667899999999        999  99  6666       6    7877766555        4444444310  000


Q ss_pred             HHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHH---HHHHHHhcCCCEEEEec
Q psy11400        184 RDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRV---AMARLFYHRPQFAILDE  260 (298)
Q Consensus       184 ~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRl---aiARaL~~~P~iliLDE  260 (298)
                                         .+++..+++..++..              ...+|+|+.|++   ++++|+..+|+++|+||
T Consensus       148 -------------------~eqL~~~~~~~gl~~--------------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDt  194 (306)
T 1vma_A          148 -------------------IEQLKIWGERVGATV--------------ISHSEGADPAAVAFDAVAHALARNKDVVIIDT  194 (306)
T ss_dssp             -------------------HHHHHHHHHHHTCEE--------------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             -------------------HHHHHHHHHHcCCcE--------------EecCCccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence                               122344455555432              235689999999   99999999999999999


Q ss_pred             ccc
Q psy11400        261 CTS  263 (298)
Q Consensus       261 PTs  263 (298)
                      |..
T Consensus       195 pg~  197 (306)
T 1vma_A          195 AGR  197 (306)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            975

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.43  E-value=6.6e-06  Score=74.94  Aligned_cols=88  Identities=11%  Similarity=-0.008  Sum_probs=57.5

Q ss_pred             EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---c-----------CCCcEEE
Q psy11400        110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---P-----------PRGKLFY  171 (298)
Q Consensus       110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---~-----------~r~~i~~  171 (298)
                      |++.+|++++++        |||  ||  |+++       +    .|+.+|.+|+|..   .           ..+.++|
T Consensus       164 f~~l~geiv~l~--------G~sG~GKSTll~~-------l----~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~  224 (301)
T 1u0l_A          164 KEYLKGKISTMA--------GLSGVGKSSLLNA-------I----NPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY  224 (301)
T ss_dssp             HHHHSSSEEEEE--------CSTTSSHHHHHHH-------H----STTCCCC-------------CCCSCCEEECTTSCE
T ss_pred             HHHhcCCeEEEE--------CCCCCcHHHHHHH-------h----cccccccccceecccCCCCCceeeeEEEEcCCCCE
Confidence            456789999999        999  99  9999       8    8888888888753   1           0135899


Q ss_pred             EcCcCCC-----------------CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCc-hhhhh
Q psy11400        172 VPQRPYM-----------------TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLG-YILNR  221 (298)
Q Consensus       172 v~Q~~~l-----------------~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~  221 (298)
                      |+|.|.+                 +..|+ +|+.|+....    .....+++.++++.++|. +..++
T Consensus       225 v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~~~~~  287 (301)
T 1u0l_A          225 VVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAESRYEN  287 (301)
T ss_dssp             EESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHHHHHH
T ss_pred             EEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHHHHHH
Confidence            9999842                 23466 7777653210    122345788999999995 55444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.40  E-value=1.3e-07  Score=87.47  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCC-------cEEEEeccCCcccCCCC--cc--eeecCccCccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGA-------LNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTL  149 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g-------~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~  149 (298)
                      ++.++++..|.. ..        +++++++.+++|       +.++++        ||+  ||  |+++       +   
T Consensus        19 lr~~~l~~~~g~-~~--------~~~~l~~~i~~~~~~~~~~~~~ll~--------Gp~G~GKTTLa~~-------i---   71 (334)
T 1in4_A           19 LRPKSLDEFIGQ-EN--------VKKKLSLALEAAKMRGEVLDHVLLA--------GPPGLGKTTLAHI-------I---   71 (334)
T ss_dssp             TSCSSGGGCCSC-HH--------HHHHHHHHHHHHHHHTCCCCCEEEE--------SSTTSSHHHHHHH-------H---
T ss_pred             cCCccHHHccCc-HH--------HHHHHHHHHHHHHhcCCCCCeEEEE--------CCCCCcHHHHHHH-------H---
Confidence            455566665632 22        889999999877       899999        999  99  8888       6   


Q ss_pred             ccccc----ccCCceeec-----------cCCCcEEEEcCcCCCCCCCHHHHHc
Q psy11400        150 RDQLW----PLFGGTVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVI  188 (298)
Q Consensus       150 ~~~l~----~~~~G~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~  188 (298)
                       ++..    .+.+|.+..           ..+..|.|++|...++. ++.|++.
T Consensus        72 -a~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L~  123 (334)
T 1in4_A           72 -ASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELLY  123 (334)
T ss_dssp             -HHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred             -HHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence             5544    455555421           12457999999876654 6777663

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.36  E-value=0.00028  Score=64.11  Aligned_cols=116  Identities=12%  Similarity=0.067  Sum_probs=68.2

Q ss_pred             eCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHc
Q psy11400        113 RGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVI  188 (298)
Q Consensus       113 ~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~  188 (298)
                      ++|++++++        |+|  ||  ++..       +    ++.+.+..|       .++.++.++++  ..+..+++ 
T Consensus       103 ~~g~vi~lv--------G~~GsGKTTl~~~-------L----A~~l~~~~G-------~~V~lv~~D~~--r~~a~eqL-  153 (296)
T 2px0_A          103 IHSKYIVLF--------GSTGAGKTTTLAK-------L----AAISMLEKH-------KKIAFITTDTY--RIAAVEQL-  153 (296)
T ss_dssp             CCSSEEEEE--------ESTTSSHHHHHHH-------H----HHHHHHTTC-------CCEEEEECCCS--STTHHHHH-
T ss_pred             CCCcEEEEE--------CCCCCCHHHHHHH-------H----HHHHHHhcC-------CEEEEEecCcc--cchHHHHH-
Confidence            479999999        999  99  6666       6    777766666       35889998873  22233332 


Q ss_pred             cCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHH
Q psy11400        189 YPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD  268 (298)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~  268 (298)
                                        ....+..++...              ...+ +..-+.++++  +.+|+++|+|  |+|+|+.
T Consensus       154 ------------------~~~~~~~gl~~~--------------~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~  196 (296)
T 2px0_A          154 ------------------KTYAELLQAPLE--------------VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFK  196 (296)
T ss_dssp             ------------------HHHHTTTTCCCC--------------BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTT
T ss_pred             ------------------HHHHHhcCCCeE--------------ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChh
Confidence                              122222222110              0112 2334666665  4999999999  9999876


Q ss_pred             HHHHHHHHHHh-----cCcEEEEE--ecCcchh
Q psy11400        269 VEGSMYEYCRE-----VGITLFTV--SHRKSLW  294 (298)
Q Consensus       269 ~~~~i~~~l~~-----~~~TiIii--tH~l~~~  294 (298)
                      ....+.++.+-     ...+++++  +|..+.+
T Consensus       197 ~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~  229 (296)
T 2px0_A          197 DPQYIDELKETIPFESSIQSFLVLSATAKYEDM  229 (296)
T ss_dssp             SHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH
T ss_pred             hHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH
Confidence            55444443221     12234444  8875433

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.34  E-value=1.7e-07  Score=84.56  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeecc-----------CCCc
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKP-----------PRGK  168 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~-----------~r~~  168 (298)
                      ++++++|.+++|  ++|+        ||+  ||  |+++       +    ++...+  +.+...           ..+.
T Consensus        35 ~l~~~~l~~~~G--vlL~--------Gp~GtGKTtLaka-------l----a~~~~~--~~i~i~g~~l~~~~~~~~~~~   91 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLA--------GPPGCGKTLLAKA-------V----ANESGL--NFISVKGPELLNMYVGESERA   91 (274)
T ss_dssp             HHHHTTCCCCSE--EEEE--------SSTTSCHHHHHHH-------H----HHHTTC--EEEEEETTTTCSSTTHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEE--------CCCCCcHHHHHHH-------H----HHHcCC--CEEEEEcHHHHhhhhhHHHHH
Confidence            789999999999  9999        999  99  8888       6    555433  233211           0123


Q ss_pred             EEEEcCcC-CCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHH
Q psy11400        169 LFYVPQRP-YMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMA  246 (298)
Q Consensus       169 i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiA  246 (298)
                      +++++|++ ... ..++.|++......     ..  ....    .  ......++         ....|||||+||+.|+
T Consensus        92 i~~vf~~a~~~~p~i~~~Deid~~~~~-----r~--~~~~----~--~~~~~~~~---------~l~~Lsgg~~~~~~i~  149 (274)
T 2x8a_A           92 VRQVFQRAKNSAPCVIFFDEVDALCPR-----RS--DRET----G--ASVRVVNQ---------LLTEMDGLEARQQVFI  149 (274)
T ss_dssp             HHHHHHHHHHTCSEEEEEETCTTTCC----------------------CTTHHHH---------HHHHHHTCCSTTCEEE
T ss_pred             HHHHHHHHHhcCCCeEeeehhhhhhcc-----cC--CCcc----h--HHHHHHHH---------HHHhhhcccccCCEEE
Confidence            56666654 111 22334444322110     00  0000    0  01122222         2457999999999999


Q ss_pred             HHHhcCCCEEEEeccccC------------CCHHHHHHHHHHHH
Q psy11400        247 RLFYHRPQFAILDECTSA------------VSVDVEGSMYEYCR  278 (298)
Q Consensus       247 RaL~~~P~iliLDEPTs~------------LD~~~~~~i~~~l~  278 (298)
                      +|+..+|++|  |||+.-            -|...+..|++.+.
T Consensus       150 ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          150 MAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             EEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             EeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence            9999999985  999752            26677777777654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.31  E-value=2.4e-07  Score=77.93  Aligned_cols=55  Identities=11%  Similarity=0.033  Sum_probs=40.1

Q ss_pred             ChhHHHHHHHHH------HHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecC-cchh
Q psy11400        236 SGGEKQRVAMAR------LFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHR-KSLW  294 (298)
Q Consensus       236 SgGqkQRlaiAR------aL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~-l~~~  294 (298)
                      |+|++|++.++.      +++.+|+...+|+   ++|+..... ++.+.+   .+.++|.+||. ++.+
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~  160 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNL  160 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGH
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhH
Confidence            889999988888      9999999888884   789876665 555543   36799999998 6554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.15  E-value=5.8e-05  Score=75.16  Aligned_cols=145  Identities=13%  Similarity=0.028  Sum_probs=86.1

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCC-ceeec------cCCCcEEEE
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFG-GTVTK------PPRGKLFYV  172 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~-G~i~~------~~r~~i~~v  172 (298)
                      +++++++.+++|+.++|+        ||+  ||  |++.       +    ++++++.. |.+..      .....++++
T Consensus        49 ~l~~l~~~i~~g~~vll~--------Gp~GtGKTtlar~-------i----a~~l~~~~~~~~~~~~~~~~~~~p~i~~~  109 (604)
T 3k1j_A           49 AVEVIKTAANQKRHVLLI--------GEPGTGKSMLGQA-------M----AELLPTETLEDILVFPNPEDENMPRIKTV  109 (604)
T ss_dssp             HHHHHHHHHHTTCCEEEE--------CCTTSSHHHHHHH-------H----HHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred             hHhhccccccCCCEEEEE--------eCCCCCHHHHHHH-------H----hccCCcccCCeEEEeCCcccccCCcEEEE
Confidence            889999999999999999        999  99  8888       7    77777665 44322      123457777


Q ss_pred             cCcCC----------------------CC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCccccc
Q psy11400        173 PQRPY----------------------MT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA  229 (298)
Q Consensus       173 ~Q~~~----------------------l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~  229 (298)
                      |+...                      .+ ..++.+|+........  ....-.+......+.++.         ++...
T Consensus       110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~--~~~~v~~~~~~~~~L~G~---------~~~~~  178 (604)
T 3k1j_A          110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT--KAPFIDATGAHAGALLGD---------VRHDP  178 (604)
T ss_dssp             ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCS--SCCEEECTTCCHHHHHCE---------ECCCC
T ss_pred             ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCC--CCCEEEcCCCCHHhcCce---------EEech
Confidence            76430                      00 0111222211110000  000000000000011111         11111


Q ss_pred             ccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       230 ~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      .+...+|+|++|++..++....++.+|+|||... |++.....+.+.+.+
T Consensus       179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            1235699999999999999999999999999998 899999999998874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.14  E-value=3.8e-05  Score=70.34  Aligned_cols=104  Identities=10%  Similarity=0.045  Sum_probs=58.7

Q ss_pred             EEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec------cC---C---C-cEEEE
Q psy11400        110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK------PP---R---G-KLFYV  172 (298)
Q Consensus       110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~------~~---r---~-~i~~v  172 (298)
                      +++.+|++++|+        |+|  ||  |++.       |    .|..++..|+|..      ..   .   + .++|+
T Consensus       168 ~~~~~G~~~~lv--------G~sG~GKSTLln~-------L----~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v  228 (307)
T 1t9h_A          168 IPHFQDKTTVFA--------GQSGVGKSSLLNA-------I----SPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLV  228 (307)
T ss_dssp             GGGGTTSEEEEE--------ESHHHHHHHHHHH-------H----CC-------------------CCCCCEEEETTEEE
T ss_pred             HhhcCCCEEEEE--------CCCCCCHHHHHHH-------h----cccccccccceeeecCCCcccccHHHHhhcCCEEE
Confidence            566799999999        999  99  9999       7    7887888887653      10   1   1 16999


Q ss_pred             cCcCCCC-----CCCHHHHHc--cCCcc--------hhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCCh
Q psy11400        173 PQRPYMT-----LGTLRDQVI--YPHTK--------EDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSG  237 (298)
Q Consensus       173 ~Q~~~l~-----~~tv~eni~--~~~~~--------~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSg  237 (298)
                      +|.|.+.     ..|+ ||+.  |+...        ..-.......+.+.++++.+++.+.....         ...|+.
T Consensus       229 ~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~---------y~~lls  298 (307)
T 1t9h_A          229 ADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH---------YVEFMT  298 (307)
T ss_dssp             ESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH---------HHHHHH
T ss_pred             ecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH---------HHHHHH
Confidence            9999653     2478 8883  33100        00000112345788999999997643221         235677


Q ss_pred             hHHHH
Q psy11400        238 GEKQR  242 (298)
Q Consensus       238 GqkQR  242 (298)
                      |++||
T Consensus       299 ~~~~~  303 (307)
T 1t9h_A          299 EIKDR  303 (307)
T ss_dssp             HHHTT
T ss_pred             HHhhc
Confidence            77773

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.12  E-value=2.8e-06  Score=77.65  Aligned_cols=55  Identities=16%  Similarity=-0.111  Sum_probs=47.5

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEE-------------------eCCcEEEEeccCCcccCCCC--cc--
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGV-------------------RGALNLLWPLFGGTVTKPPR--GK--  134 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i-------------------~~g~~~~i~~~~~~~~~G~s--GK--  134 (298)
                      .+.|+++||++.|.   +        ++++++|.+                   ++|++++|+        |+|  ||  
T Consensus        35 ~~~i~~~~v~~~y~---~--------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~--------G~~GsGKST   95 (308)
T 1sq5_A           35 NEDLSLEEVAEIYL---P--------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIA--------GSVAVGKST   95 (308)
T ss_dssp             CTTCCHHHHHHTHH---H--------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEE--------ECTTSSHHH
T ss_pred             ccccchHhHHHHHH---H--------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEE--------CCCCCCHHH
Confidence            45689999999993   3        899999988                   999999999        999  99  


Q ss_pred             eeecCccCccccccccccccc--cCCceee
Q psy11400        135 LFYVPQRPYMTLGTLRDQLWP--LFGGTVT  162 (298)
Q Consensus       135 L~~~~~~~~~~l~~~~~~l~~--~~~G~i~  162 (298)
                      |+++       +    .++++  |++|++.
T Consensus        96 l~~~-------L----~~~l~~~~~~G~i~  114 (308)
T 1sq5_A           96 TARV-------L----QALLSRWPEHRRVE  114 (308)
T ss_dssp             HHHH-------H----HHHHTTSTTCCCEE
T ss_pred             HHHH-------H----HHHHhhCCCCCeEE
Confidence            8888       7    88887  8888864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.02  E-value=0.00092  Score=64.06  Aligned_cols=56  Identities=11%  Similarity=0.127  Sum_probs=40.2

Q ss_pred             CCCCChhHHHHHHHHHHHh--cCCCEEEEeccccCCCH--------HHHHHHH----HHHHhcCcEEEEEec
Q psy11400        232 IDVLSGGEKQRVAMARLFY--HRPQFAILDECTSAVSV--------DVEGSMY----EYCREVGITLFTVSH  289 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~--~~P~iliLDEPTs~LD~--------~~~~~i~----~~l~~~~~TiIiitH  289 (298)
                      ...+|.+|.+  +.+|.+.  ++|+++|+|+++...+.        .....+.    .+.++.+++||+++|
T Consensus       293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq  362 (454)
T 2r6a_A          293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ  362 (454)
T ss_dssp             CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            3578999876  5667766  68999999999998742        1222333    333456999999999

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.75  E-value=3.8e-05  Score=75.04  Aligned_cols=59  Identities=19%  Similarity=0.171  Sum_probs=41.8

Q ss_pred             CCChhHHHHH----------HHHHHHhcCCC-EEEEeccccCCCHH---HHHHHHHHHH---hcCcEEEEEecCcc
Q psy11400        234 VLSGGEKQRV----------AMARLFYHRPQ-FAILDECTSAVSVD---VEGSMYEYCR---EVGITLFTVSHRKS  292 (298)
Q Consensus       234 ~LSgGqkQRl----------aiARaL~~~P~-iliLDEPTs~LD~~---~~~~i~~~l~---~~~~TiIiitH~l~  292 (298)
                      .+|+||+|+.          ++|+++...|. ++++||+++.++..   .++.+.++.+   ..|.++|++|||++
T Consensus       268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            5788988753          35677778898 89999999988732   2333333433   34899999999997

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.014  Score=49.85  Aligned_cols=53  Identities=13%  Similarity=0.050  Sum_probs=34.8

Q ss_pred             HHHHHHHHHh--cCCCEEEEeccccCC--CHHH-H---HHHHHHHHhcCcEEEEEecCcch
Q psy11400        241 QRVAMARLFY--HRPQFAILDECTSAV--SVDV-E---GSMYEYCREVGITLFTVSHRKSL  293 (298)
Q Consensus       241 QRlaiARaL~--~~P~iliLDEPTs~L--D~~~-~---~~i~~~l~~~~~TiIiitH~l~~  293 (298)
                      +....++.++  .+|+++++|++++.+  |+.. .   ..+.+.+++.|+|+|+++|....
T Consensus       115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~  175 (247)
T 2dr3_A          115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG  175 (247)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred             HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3334444444  579999999999987  4421 2   23444556679999999997653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.31  E-value=0.00086  Score=65.00  Aligned_cols=58  Identities=17%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             CCCCChhHHHHHHHHH--HHhc---------------CCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecC
Q psy11400        232 IDVLSGGEKQRVAMAR--LFYH---------------RPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHR  290 (298)
Q Consensus       232 ~~~LSgGqkQRlaiAR--aL~~---------------~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~  290 (298)
                      ...+||||+|-.-+|.  |+++               .=.+++|||+ +-+|.+.....++++++.|.=+|++|=.
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~  451 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE  451 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence            4578999999543333  2222               1258999999 9999999999999999999988888744

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.28  E-value=0.0079  Score=58.23  Aligned_cols=39  Identities=15%  Similarity=0.017  Sum_probs=36.8

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceee
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVT  162 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~  162 (298)
                      +++++||+|++ ++++|+        |||  ||  |+++       +    +|+.+|++|+|.
T Consensus        19 ~l~~vsl~i~~-e~~~li--------G~nGsGKSTLl~~-------l----~Gl~~p~~G~I~   61 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLS--------GGNGAGKSTTMAG-------F----VTALIPDLTLLN   61 (483)
T ss_dssp             TEEEEEEECCS-SEEEEE--------CCTTSSHHHHHHH-------H----HHHHCCCTTTCC
T ss_pred             cccceEEEEcc-ceEEEE--------CCCCCcHHHHHHH-------H----hcCCCCCCCEEE
Confidence            89999999999 999999        999  99  9999       8    999999999874

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.18  E-value=0.0065  Score=56.16  Aligned_cols=55  Identities=5%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhc-CcEEEEEec
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-GITLFTVSH  289 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~-~~TiIiitH  289 (298)
                      .||.+++||++.|...+.+++++|.|+|...++ +....+.++.++. +..+|+|-|
T Consensus       109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-QIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-HHHHHHHHHHHhcCCCCEEEEec
Confidence            699999999999999999999999999875543 2233344444455 788888865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.74  E-value=0.0002  Score=60.33  Aligned_cols=115  Identities=14%  Similarity=0.013  Sum_probs=58.8

Q ss_pred             eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccC--Cce-eecc----CCCcEEEEcCcCC
Q psy11400        109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLF--GGT-VTKP----PRGKLFYVPQRPY  177 (298)
Q Consensus       109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~--~G~-i~~~----~r~~i~~v~Q~~~  177 (298)
                      |+++++|++++|+        |||  ||  |+++       +    .++++..  .|. +...    .+..++|+||++.
T Consensus         1 s~~m~~g~ii~l~--------Gp~GsGKSTl~~~-------L----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (205)
T 3tr0_A            1 SNAMNKANLFIIS--------APSGAGKTSLVRA-------L----VKALAEIKISISHTTRPKRPGDQEGVDYFFIDET   61 (205)
T ss_dssp             ----CCCCEEEEE--------CCTTSCHHHHHHH-------H----HHHSSSEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred             CCcCCCCcEEEEE--------CcCCCCHHHHHHH-------H----HhhCCCeEEeceeccCCCchhHhcCceEEeccHH
Confidence            5778899999999        999  99  8888       6    6654311  111 1111    2345889999886


Q ss_pred             CCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEE
Q psy11400        178 MTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFA  256 (298)
Q Consensus       178 l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~il  256 (298)
                      .+. .++.+++.+....... ......+.+.+.++.- ..                 .+-.+..|-+..++....+|.++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~g-~~-----------------vi~d~~~~~~~~~~~~~~~~~~v  122 (205)
T 3tr0_A           62 RFQAMVKEGAFLEHATIYER-HYGTEKDWVLRQLKAG-RD-----------------VLLEIDWQGARQIRELFPPALSI  122 (205)
T ss_dssp             HHHHHHHHTCEEEEEEETTE-EEEEEHHHHHHHHHTT-CE-----------------EEEECCHHHHHHHHHHCTTCEEE
T ss_pred             HHHHHHhcCcEEeeeeeecc-cccchHHHHHHHHHcC-Ce-----------------EEEEECHHHHHHHHHhCCCcEEE
Confidence            543 2444444322111100 0122334455554431 11                 11112334444555666677778


Q ss_pred             EEecc
Q psy11400        257 ILDEC  261 (298)
Q Consensus       257 iLDEP  261 (298)
                      +++.|
T Consensus       123 ~~~~~  127 (205)
T 3tr0_A          123 FILPP  127 (205)
T ss_dssp             EEECS
T ss_pred             EEECc
Confidence            87776

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.66  E-value=2e-06  Score=76.98  Aligned_cols=29  Identities=24%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEecccc
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTS  263 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs  263 (298)
                      ..|||||+||+.+++|+..+|++  ||++.-
T Consensus       168 ~~lsgg~~~~~~i~~a~t~~p~~--ld~~l~  196 (278)
T 1iy2_A          168 VEMDGFEKDTAIVVMAATNRPDI--LDPALL  196 (278)
T ss_dssp             HHHTTCCTTCCEEEEEEESCTTS--SCHHHH
T ss_pred             HHHhCCCCCCCEEEEEecCCchh--CCHhHc
Confidence            36899999999999999999987  787754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.18  E-value=2.5e-05  Score=69.75  Aligned_cols=67  Identities=13%  Similarity=0.060  Sum_probs=49.3

Q ss_pred             cccccc-cCCCCChhHHHHHHHHHHHhcCCCE--EEEeccccCCCHHHH---------HHHHHHHHh--cCcEEEEEecC
Q psy11400        225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQF--AILDECTSAVSVDVE---------GSMYEYCRE--VGITLFTVSHR  290 (298)
Q Consensus       225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~i--liLDEPTs~LD~~~~---------~~i~~~l~~--~~~TiIiitH~  290 (298)
                      ++.... +...+|+|  ||++++++++.+|++  +|+||+|+++|...+         ....+.++.  .|.|.+.++||
T Consensus       162 l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r  239 (261)
T 2eyu_A          162 LQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAME  239 (261)
T ss_dssp             EEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHH
T ss_pred             hhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHH
Confidence            444443 44568899  999999999999999  999999999997632         122333222  48899999998


Q ss_pred             cch
Q psy11400        291 KSL  293 (298)
Q Consensus       291 l~~  293 (298)
                      ++.
T Consensus       240 ~~~  242 (261)
T 2eyu_A          240 ASP  242 (261)
T ss_dssp             HCS
T ss_pred             HhC
Confidence            763

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.05  E-value=0.00075  Score=59.80  Aligned_cols=44  Identities=9%  Similarity=-0.078  Sum_probs=26.3

Q ss_pred             CcEEEeee-eEecCCCCCCCCCCcccceeeeeEEEeC---CcEEEEeccCCcccCCCC--cc--eeec
Q psy11400         79 NLRGRLGI-TLGLRSGGLGFDSRWGRSFFDYMFGVRG---ALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus        79 ~~i~~~~v-~~~~~~~~~~~~~~~~~~l~~isl~i~~---g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      ..++++|+ ++.|..+..        +|+|+||+|++   |++++|+        |++  ||  +.++
T Consensus        16 ~~l~~~~~~~~~~~~~~~--------~l~~~~~~i~~~l~g~~i~l~--------G~~GsGKSTl~~~   67 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQ--------ILKKKAEEVKPYLNGRSMYLV--------GMMGSGKTTVGKI   67 (250)
T ss_dssp             ----------------CH--------HHHHHHHTTHHHHTTCCEEEE--------CSTTSCHHHHHHH
T ss_pred             CceEEcceeeEEecCcch--------hhhhhhhhhhhhcCCCEEEEE--------CCCCCCHHHHHHH
Confidence            36899999 999933333        99999999999   9999999        999  99  7776

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.97  E-value=0.005  Score=52.99  Aligned_cols=27  Identities=15%  Similarity=-0.015  Sum_probs=18.3

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      ..+++||++++|++++|+        |||  ||  |+++
T Consensus        16 ~~~~~sl~v~~G~ii~l~--------Gp~GsGKSTl~~~   46 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLS--------SPSGCGKTTVANK   46 (231)
T ss_dssp             ------CCEECCCEEEEE--------CSCC----CHHHH
T ss_pred             ccCCCCcccCCCCEEEEE--------CCCCCCHHHHHHH
Confidence            578899999999999999        999  99  8888

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.83  E-value=0.055  Score=50.00  Aligned_cols=52  Identities=12%  Similarity=0.260  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhcC--CCEEEEeccccCC----------CH----H---HHHHHHHH---HHhcCcEEEEEecCcc
Q psy11400        241 QRVAMARLFYHR--PQFAILDECTSAV----------SV----D---VEGSMYEY---CREVGITLFTVSHRKS  292 (298)
Q Consensus       241 QRlaiARaL~~~--P~iliLDEPTs~L----------D~----~---~~~~i~~~---l~~~~~TiIiitH~l~  292 (298)
                      |-+.++++++.+  |+++|+||+++.+          |.    .   ..+.+.++   +++.++|+|+++|-..
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~  199 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE  199 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence            456788888765  9999999999998          32    1   11222232   3567999999999653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.72  E-value=0.014  Score=59.80  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=46.8

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEecccc-CCCHHHHHHHHHHHHh---cCcEEEE-EecCcchh
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILDECTS-AVSVDVEGSMYEYCRE---VGITLFT-VSHRKSLW  294 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs-~LD~~~~~~i~~~l~~---~~~TiIi-itH~l~~~  294 (298)
                      ...+|+|+.+|..++++++.+++++|+|||.. +||......+++.+..   ...++++ .||+.+.+
T Consensus       188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l  255 (773)
T 2xau_A          188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF  255 (773)
T ss_dssp             EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred             EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence            34689999999999999999999999999997 8987655444443332   1355665 48876543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.70  E-value=0.0023  Score=59.70  Aligned_cols=20  Identities=20%  Similarity=0.012  Sum_probs=16.9

Q ss_pred             EEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400        111 GVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus       111 ~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      -+++|+++.|.        ||+  ||  |+..
T Consensus        57 Gi~~G~i~~I~--------GppGsGKSTLal~   80 (356)
T 3hr8_A           57 GYPRGRIVEIF--------GQESSGKTTLALH   80 (356)
T ss_dssp             SEETTEEEEEE--------ESTTSSHHHHHHH
T ss_pred             CccCCcEEEEE--------CCCCCCHHHHHHH
Confidence            47899999999        999  99  5544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.67  E-value=0.046  Score=52.78  Aligned_cols=58  Identities=19%  Similarity=0.305  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEecccc----------CCCHHHHHHHHHHHH-------hcCcEEEEEecCcchh
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTS----------AVSVDVEGSMYEYCR-------EVGITLFTVSHRKSLW  294 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs----------~LD~~~~~~i~~~l~-------~~~~TiIiitH~l~~~  294 (298)
                      +++++|-.+++|....|.+|++||+.+          +.|...+..+.+++.       ..+..||.+||+++.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            678899999999999999999999954          455544444444443       1367899999998643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.18  E-value=0.018  Score=53.21  Aligned_cols=30  Identities=17%  Similarity=0.258  Sum_probs=22.8

Q ss_pred             CCCChhHHHHHHHHHHH---hc--CCCEEEEeccc
Q psy11400        233 DVLSGGEKQRVAMARLF---YH--RPQFAILDECT  262 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL---~~--~P~iliLDEPT  262 (298)
                      .++|+||+||.+++|+|   +.  +++++++|||+
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            46999999999999999   77  89999999997

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.14  E-value=6.5e-05  Score=70.47  Aligned_cols=68  Identities=13%  Similarity=0.028  Sum_probs=49.2

Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCE--EEEeccccCCCHH----H-----HHHHHHHHHh--cCcEEEEEec
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQF--AILDECTSAVSVD----V-----EGSMYEYCRE--VGITLFTVSH  289 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~i--liLDEPTs~LD~~----~-----~~~i~~~l~~--~~~TiIiitH  289 (298)
                      +++.++. ....+|+|  ||+++|++++.+|++  +|+||+|++||..    .     +....+.+..  .|.|.+.++|
T Consensus       272 ~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~  349 (372)
T 2ewv_A          272 ILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAM  349 (372)
T ss_dssp             SCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTT
T ss_pred             hhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHH
Confidence            3444433 33456889  899999999999999  9999999999864    2     1123333332  4899999999


Q ss_pred             Ccch
Q psy11400        290 RKSL  293 (298)
Q Consensus       290 ~l~~  293 (298)
                      |++.
T Consensus       350 r~~~  353 (372)
T 2ewv_A          350 EASP  353 (372)
T ss_dssp             SSCS
T ss_pred             HHcC
Confidence            9863

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=94.13  E-value=0.0058  Score=61.47  Aligned_cols=43  Identities=12%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             hcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        250 YHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       250 ~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      ..++.++++| |+.++++.++..+ +.+++.+.++|++.|.++..
T Consensus        97 ~ad~~ilVvD-~~~g~~~qt~~~~-~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           97 AADAALVAVS-AEAGVQVGTERAW-TVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HCSEEEEEEE-TTTCSCHHHHHHH-HHHHHTTCCEEEEEECGGGC
T ss_pred             hcCcEEEEEc-CCcccchhHHHHH-HHHHHccCCEEEEecCCchh
Confidence            4677888899 9999999888544 44455688999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.36  E-value=0.6  Score=42.32  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             cCCCEEEEeccccCCCHHHHHHHHHHHHh------cCcEEEEEecCcch
Q psy11400        251 HRPQFAILDECTSAVSVDVEGSMYEYCRE------VGITLFTVSHRKSL  293 (298)
Q Consensus       251 ~~P~iliLDEPTs~LD~~~~~~i~~~l~~------~~~TiIiitH~l~~  293 (298)
                      .+|.++++||+... |......+.+.+.+      .+.++|+++|+.+.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~  171 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  171 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence            45889999999886 88888878777642      37889999998853

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.26  E-value=0.01  Score=56.02  Aligned_cols=44  Identities=20%  Similarity=0.018  Sum_probs=38.9

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCccccee--------------eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFF--------------DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~--------------~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      +.+.|+||++.||..+.        .++              |+++.+.+|+.++|+        |++  ||  |++.
T Consensus       132 ~ri~Fe~ltp~yP~er~--------~Le~~~~~~~~tGiraID~~~pi~rGQr~~Iv--------G~sG~GKTtLl~~  193 (422)
T 3ice_A          132 NKILFENLTPLHANSRL--------RMERGNGSTEDLTARVLDLASPIGRGQRGLIV--------APPKAGKTMLLQN  193 (422)
T ss_dssp             TSCCTTTSCEESCCSBC--------CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEE--------CCSSSSHHHHHHH
T ss_pred             CCceeccccccCCCCcc--------ccccCCCCcccccceeeeeeeeecCCcEEEEe--------cCCCCChhHHHHH
Confidence            46889999999997665        788              899999999999999        999  99  7766

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.10  E-value=0.00097  Score=62.98  Aligned_cols=40  Identities=18%  Similarity=0.127  Sum_probs=31.3

Q ss_pred             CC--CEEEEeccccCCCHHHHHHHHHHHHhc----CcEEEEEecCcch
Q psy11400        252 RP--QFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSHRKSL  293 (298)
Q Consensus       252 ~P--~iliLDEPTs~LD~~~~~~i~~~l~~~----~~TiIiitH~l~~  293 (298)
                      +|  ++.++|||++.+|+...+..++.+++.    |.|++  +|.+..
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~  184 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKE  184 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHH
Confidence            89  999999999999999888777766543    55643  887654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=92.74  E-value=0.32  Score=44.61  Aligned_cols=56  Identities=14%  Similarity=0.135  Sum_probs=35.5

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHH--HHHHHHHhcC-cEEEEEec
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEG--SMYEYCREVG-ITLFTVSH  289 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~--~i~~~l~~~~-~TiIiitH  289 (298)
                      +.++.++|+..+++..+.+|+.+||.-..+..|.....  .+.+.+...+ .++++++.
T Consensus       154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeC
Confidence            36788999999999999999988887433334433222  2233333334 46666654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=92.26  E-value=0.51  Score=43.09  Aligned_cols=52  Identities=12%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             HHHHHHHHHh----cCCCEEEEeccccCCCHH-------H-----HHH----HHHHHHhcCcEEEEEecCcc
Q psy11400        241 QRVAMARLFY----HRPQFAILDECTSAVSVD-------V-----EGS----MYEYCREVGITLFTVSHRKS  292 (298)
Q Consensus       241 QRlaiARaL~----~~P~iliLDEPTs~LD~~-------~-----~~~----i~~~l~~~~~TiIiitH~l~  292 (298)
                      +.+..++.++    .+++++|+|+.++-....       .     ...    +..+.++.+++||+++|-..
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence            4555566666    679999999999866332       1     112    22334456999999998543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=92.00  E-value=0.43  Score=43.13  Aligned_cols=52  Identities=12%  Similarity=0.098  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHh---cCCCEEEEeccccCCCHH--------H----HHH----HHHHHHhcCcEEEEEecCc
Q psy11400        240 KQRVAMARLFY---HRPQFAILDECTSAVSVD--------V----EGS----MYEYCREVGITLFTVSHRK  291 (298)
Q Consensus       240 kQRlaiARaL~---~~P~iliLDEPTs~LD~~--------~----~~~----i~~~l~~~~~TiIiitH~l  291 (298)
                      .+.+..++.++   .+|+++|+|+.++-....        .    ...    +..+.++.+++||++.|-.
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~  258 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM  258 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence            35677778887   679999999999865321        1    112    2233345699999998854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=91.73  E-value=0.0053  Score=53.51  Aligned_cols=47  Identities=11%  Similarity=-0.046  Sum_probs=35.7

Q ss_pred             eEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec-------------------cC
Q psy11400        109 MFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK-------------------PP  165 (298)
Q Consensus       109 sl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~-------------------~~  165 (298)
                      +|++.+ ++++|+        |||  ||  |+++       +    +|+.+|++|.|..                   ..
T Consensus        22 ~~~~~~-~~~~i~--------GpnGsGKSTll~~-------i----~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   81 (227)
T 1qhl_A           22 TFDLDE-LVTTLS--------GGNGAGKSTTMAA-------F----VTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL   81 (227)
T ss_dssp             EECHHH-HHHHHH--------SCCSHHHHHHHHH-------H----HHHHSCCTTTC------------------CGGGB
T ss_pred             EEEEcC-cEEEEE--------CCCCCCHHHHHHH-------H----hcccccCCCeEEECCEEcccCCccccccchhhHh
Confidence            455566 899999        999  99  9999       8    8888888887531                   01


Q ss_pred             CCcEEEEcCc
Q psy11400        166 RGKLFYVPQR  175 (298)
Q Consensus       166 r~~i~~v~Q~  175 (298)
                      +..++|++|+
T Consensus        82 ~~~i~~v~~~   91 (227)
T 1qhl_A           82 KAGVCYSMLD   91 (227)
T ss_dssp             CSSEEEEEEE
T ss_pred             hcCcEEEEEe
Confidence            4579999985

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=91.69  E-value=0.24  Score=45.47  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=46.2

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCEEEEe-ccccCCCHHHHHHHHHHHHh-c-CcEEEEEe--cCcc
Q psy11400        232 IDVLSGGEKQRVAMARLFYHRPQFAILD-ECTSAVSVDVEGSMYEYCRE-V-GITLFTVS--HRKS  292 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARaL~~~P~iliLD-EPTs~LD~~~~~~i~~~l~~-~-~~TiIiit--H~l~  292 (298)
                      ...+|+|++|++. +.+...++-++++| ++++++|......+.+.+.+ . ++.+|+|.  ||+.
T Consensus       229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            4578999999876 55556777789999 99999998877766665554 2 78888888  7764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=90.96  E-value=0.06  Score=43.98  Aligned_cols=24  Identities=8%  Similarity=-0.123  Sum_probs=21.6

Q ss_pred             eeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400        106 FDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus       106 ~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      ++++|.+.+| +++|+        |+|  ||  |+++
T Consensus        18 ~~~~~~~~~g-~~~i~--------G~NGsGKStll~a   45 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIV--------GANGSGKSNIGDA   45 (182)
T ss_dssp             SCEEEECCSS-EEEEE--------ECTTSSHHHHHHH
T ss_pred             ccEEEecCCC-cEEEE--------CCCCCCHHHHHHH
Confidence            6788999999 99999        999  99  7777

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=89.83  E-value=0.034  Score=46.25  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=16.9

Q ss_pred             EEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400        110 FGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus       110 l~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      +++++|++++|+        |+|  ||  +.++
T Consensus         1 m~i~~g~~i~l~--------G~~GsGKSTl~~~   25 (207)
T 2j41_A            1 MDNEKGLLIVLS--------GPSGVGKGTVRKR   25 (207)
T ss_dssp             ---CCCCEEEEE--------CSTTSCHHHHHHH
T ss_pred             CCCCCCCEEEEE--------CCCCCCHHHHHHH
Confidence            467899999999        999  99  8887

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=89.10  E-value=0.17  Score=41.60  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        241 QRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       241 QRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      +.+.+|++++.+|+++++|  ||++|......+++.+.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            4478899999999999999  999999988888887654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=88.10  E-value=0.18  Score=41.97  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=15.5

Q ss_pred             ceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeec
Q psy11400        104 SFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYV  138 (298)
Q Consensus       104 ~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~  138 (298)
                      +++|+||++++|++++|+        |++  ||  +.+.
T Consensus        14 ~~~~~~~~~~~~~~i~l~--------G~~GsGKsTl~~~   44 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLT--------GYMGAGKTTLGKA   44 (199)
T ss_dssp             ----------CCCEEEEE--------CCTTSCHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEE--------cCCCCCHHHHHHH
Confidence            899999999999999999        999  99  7666

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=87.10  E-value=0.01  Score=54.45  Aligned_cols=126  Identities=12%  Similarity=0.059  Sum_probs=66.9

Q ss_pred             ceeeeeEEEeCCc------EEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeeccCCCcEEEEc
Q psy11400        104 SFFDYMFGVRGAL------NLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTKPPRGKLFYVP  173 (298)
Q Consensus       104 ~l~~isl~i~~g~------~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~~~r~~i~~v~  173 (298)
                      .+++++..+.+++      +++|+        |||  ||  ++++       +    .++.....      ....+++++
T Consensus        75 ~l~~~~~~~l~~~~~~~p~iigI~--------GpsGSGKSTl~~~-------L----~~ll~~~~------~~~~v~~i~  129 (321)
T 3tqc_A           75 TLQQATYQFLGKPEPKVPYIIGIA--------GSVAVGKSTTSRV-------L----KALLSRWP------DHPNVEVIT  129 (321)
T ss_dssp             HHHHHHHHHHTCCCCCCCEEEEEE--------CCTTSSHHHHHHH-------H----HHHHTTST------TCCCEEEEE
T ss_pred             HHHHHHHHHhccCCCCCCEEEEEE--------CCCCCCHHHHHHH-------H----HHHhcccC------CCCeEEEEe
Confidence            6777777777776      89999        999  99  8888       6    66654210      123478899


Q ss_pred             CcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400        174 QRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR  252 (298)
Q Consensus       174 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~  252 (298)
                      ++.+.......+....... .+. ....+.+.+.+.++.+.-.. -+..|           .+|.+..+|+..+...+..
T Consensus       130 ~D~f~~~~~~l~~~~~~~~-~g~-P~~~D~~~l~~~L~~L~~g~~~v~~P-----------~yd~~~~~r~~~~~~~v~~  196 (321)
T 3tqc_A          130 TDGFLYSNAKLEKQGLMKR-KGF-PESYDMPSLLRVLNAIKSGQRNVRIP-----------VYSHHYYDIVRGQYEIVDQ  196 (321)
T ss_dssp             GGGGBCCHHHHHHTTCGGG-TTS-GGGBCHHHHHHHHHHHHTTCSSEEEE-----------EEETTTTEEEEEEEEEECS
T ss_pred             ecccccchhhhhhHHHHhh-ccC-cccccHHHHHHHHHhhhccccccccc-----------hhhhhccccccCceeeccC
Confidence            9886544332222110000 000 01223444555554432211 11111           2333333443323345678


Q ss_pred             CCEEEEeccccCCCH
Q psy11400        253 PQFAILDECTSAVSV  267 (298)
Q Consensus       253 P~iliLDEPTs~LD~  267 (298)
                      |+++|++.+..-.|.
T Consensus       197 ~dIVIvEGi~lL~~~  211 (321)
T 3tqc_A          197 PDIVILEGLNILQTG  211 (321)
T ss_dssp             CSEEEEECTTTTCCC
T ss_pred             CCEEEEEcccccccc
Confidence            999999987765543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=86.92  E-value=0.37  Score=44.61  Aligned_cols=45  Identities=11%  Similarity=0.017  Sum_probs=32.4

Q ss_pred             cCCCCChhHHHHHHHH----HHH-hcCCCEEEEeccccCCCHHHHHHHHHHHHh
Q psy11400        231 WIDVLSGGEKQRVAMA----RLF-YHRPQFAILDECTSAVSVDVEGSMYEYCRE  279 (298)
Q Consensus       231 ~~~~LSgGqkQRlaiA----RaL-~~~P~iliLDEPTs~LD~~~~~~i~~~l~~  279 (298)
                      +...+|+|++|++.++    +++ ..+|++    +|+|++|......+.+.+.+
T Consensus       301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          301 KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence            4556888899988877    665 444454    89999998777777665543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=84.98  E-value=2.5  Score=36.90  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             ChhHHHHHHHHHHHhcCCCEEEEeccccCCCH----------HHHHHHHHHHHhc-------CcEEEEEecCcc
Q psy11400        236 SGGEKQRVAMARLFYHRPQFAILDECTSAVSV----------DVEGSMYEYCREV-------GITLFTVSHRKS  292 (298)
Q Consensus       236 SgGqkQRlaiARaL~~~P~iliLDEPTs~LD~----------~~~~~i~~~l~~~-------~~TiIiitH~l~  292 (298)
                      +++++.|..++++...+|.++++||+.+-++.          .....+...+...       +..+|.+|+++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            46778888888888899999999999887643          2223344444331       345777888764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=84.31  E-value=0.79  Score=41.27  Aligned_cols=54  Identities=11%  Similarity=0.094  Sum_probs=40.2

Q ss_pred             CChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcE--EEEEec
Q psy11400        235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGIT--LFTVSH  289 (298)
Q Consensus       235 LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~T--iIiitH  289 (298)
                      ||.+++||+..|...+.++++++.|+|...++. ....+.++.++.+..  +|+|-|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~-i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNY-IWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH-HHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence            999999999999999999999999998744322 233344444455777  888866

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=81.18  E-value=0.71  Score=37.87  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH
Q psy11400        243 VAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC  277 (298)
Q Consensus       243 laiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l  277 (298)
                      ...|++++.+|++.++|  |||+|......+++.+
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNI  162 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHH
Confidence            45689999999999999  9999987666666544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=80.84  E-value=2.3  Score=40.13  Aligned_cols=41  Identities=12%  Similarity=0.328  Sum_probs=31.0

Q ss_pred             cCCCEEEEeccccCCCH-HHHHHHHHHHH---hcCcEEEEEecCc
Q psy11400        251 HRPQFAILDECTSAVSV-DVEGSMYEYCR---EVGITLFTVSHRK  291 (298)
Q Consensus       251 ~~P~iliLDEPTs~LD~-~~~~~i~~~l~---~~~~TiIiitH~l  291 (298)
                      .+|++|++||+..-.+. .....++..+.   +.++.+|++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            48999999999887763 45556666553   4578999999984

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=80.04  E-value=1.6  Score=41.36  Aligned_cols=50  Identities=10%  Similarity=0.099  Sum_probs=30.5

Q ss_pred             hhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCcEEEEEec
Q psy11400        237 GGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSH  289 (298)
Q Consensus       237 gGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~~~TiIiitH  289 (298)
                      .-+.+...+++++...+-++++| ++++.|...  .+..+....+.+-|++|+
T Consensus       197 ~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~--~a~~f~~~l~i~GVIlTK  246 (425)
T 2ffh_A          197 PLMGELARLKEVLGPDEVLLVLD-AMTGQEALS--VARAFDEKVGVTGLVLTK  246 (425)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHH--HHHHHHHHTCCCEEEEES
T ss_pred             HHHHHHHHhhhccCCceEEEEEe-ccchHHHHH--HHHHHHhcCCceEEEEeC
Confidence            34667777888886666678888 556655432  222332334667777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-18
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-16
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-15
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	5e-15
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-13
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-13
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-10
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	4e-10
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	7e-10
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-09
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	9e-09
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-08
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-08
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	6e-08
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-07
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-07
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	4e-05
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-04
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-04
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	0.001

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
           R ++  V Q   +   T+++ ++         +   TD ++ E  +      +I+N  +G
Sbjct: 91  RNQIGLVQQDNILFSDTVKENILLG-------RPTATDEEVVEAAKMANAHDFIMNLPQG 143

Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
           +DT V +    LSGG+KQR+++AR+F + P   ILDE TSA+ ++ E  + E    +   
Sbjct: 144 YDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 203

Query: 282 ITLFTVSHRKS 292
            T   V+HR S
Sbjct: 204 RTTLIVAHRLS 214

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKG 224
           R ++  V Q  ++   T+ + + Y  T+E       +   + E  +      +I   + G
Sbjct: 88  RNQVALVSQNVHLFNDTVANNIAYARTEE------YSREQIEEAARMAYAMDFINKMDNG 141

Query: 225 WDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--G 281
            DT + +   +LSGG++QR+A+AR         ILDE TSA+  + E ++     E+   
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 201

Query: 282 ITLFTVSHRKSL 293
            T   ++HR S 
Sbjct: 202 RTSLVIAHRLST 213

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 153 LWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQK 212
                 G +     G++ +  Q  ++  GT+++ +I+  +          +      ++ 
Sbjct: 85  ELEASEGIIKH--SGRVSFCSQFSWIMPGTIKENIIFGVS--------YDEYRYKSVVKA 134

Query: 213 VQL-GYILNREKGWDT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVE 270
            QL   I    +  +T + +    LSGG++ R+++AR  Y      +LD     + V  E
Sbjct: 135 CQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194

Query: 271 GSMYEYCRE---VGITLFTVSHRKS 292
             ++E C        T   V+ +  
Sbjct: 195 EQVFESCVCKLMANKTRILVTSKME 219

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 5e-15
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
             ++  V Q P +   +L++ + Y  T++  +++    A  +         +I    +G+
Sbjct: 87  HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHS-----FISGLPQGY 141

Query: 226 DT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVD----VEGSMYEYCREV 280
           DT V +    LSGG++Q VA+AR    +P   ILD+ TSA+  +    VE  +YE     
Sbjct: 142 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201

Query: 281 GITLFTVSHRKSL 293
             ++  ++   SL
Sbjct: 202 SRSVLLITQHLSL 214

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R ++ +V Q   +  GT+R+ + Y    +   +      DL          ++ N     
Sbjct: 75  RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF-----ARSFVENMPDQL 129

Query: 226 DT-VADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GI 282
           +T V +    +SGG++QR+A+AR F   P+  +LDE T+++  + E  + +    +  G 
Sbjct: 130 NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGR 189

Query: 283 TLFTVSHRKS 292
           T   ++HR S
Sbjct: 190 TTLVIAHRLS 199

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 171 YVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL-GYILNREKGWDTVA 229
            V Q   +   ++ D +            G++   +    +      +I    +G++T+ 
Sbjct: 81  VVLQDNVLLNRSIIDNISLA-------NPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133

Query: 230 DWIDV-LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV--GITLFT 286
                 LSGG++QR+A+AR   + P+  I DE TSA+  + E  +     ++  G T+  
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 193

Query: 287 VSHRKSL 293
           ++HR S 
Sbjct: 194 IAHRLST 200

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 161 VTKPPRGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL 219
           +TK  R K+ +V Q+  +  L T  + V  P     +I K        E  ++      L
Sbjct: 77  LTKIRRDKIGFVFQQFNLIPLLTALENVELP-----LIFKYRGAMSGEERRKRAL--ECL 129

Query: 220 NREKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEY-- 276
              +  +  A+   + LSGG++QRVA+AR   + P   + D+ T A+       + +   
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189

Query: 277 --CREVGITLFTVSH 289
               E G T+  V+H
Sbjct: 190 KLNEEDGKTVVVVTH 204

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 151 DQLWPLFGGTVTKPPRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEY 209
            +   ++ G      +GK+F++P+   +    ++ D +        +    +   ++ + 
Sbjct: 54  LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV---ASLYGVKVNKNEIMDA 110

Query: 210 LQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDV 269
           L+ V++            +   +  LS G  +RV +A       +  +LD+   A+  D 
Sbjct: 111 LESVEV----------LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160

Query: 270 EGSMY----EYCREVGITLFTVSH 289
           +  +     E  +E GI + +   
Sbjct: 161 KHKVLKSILEILKEKGIVIISSRE 184

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 15/124 (12%)

Query: 171 YVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVA 229
            V Q   +    T+ + + +P   +   +  I D  +    + +Q+  +LNR        
Sbjct: 82  MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI-DKRVRWAAELLQIEELLNR-------- 132

Query: 230 DWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLF 285
            +   LSGG++QRVA+AR     P   ++DE  S +   +  +M    +++     +T  
Sbjct: 133 -YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191

Query: 286 TVSH 289
            V+H
Sbjct: 192 YVTH 195

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 144 MTLGTLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLG-TLRDQVIYPHTKEDMIQKGIT 202
           + L   +D    +      +  R +L  V Q   +    T+ + V+    +   + K   
Sbjct: 66  INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA 125

Query: 203 DADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECT 262
                +YL KV +      +        +   LSGG++QRV++AR     P   + DE T
Sbjct: 126 RERALKYLAKVGIDERAQGK--------YPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177

Query: 263 SAVSVDVEGSMYEYCREV---GITLFTVSH 289
           SA+  ++ G +    +++   G T+  V+H
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTH 207

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (126), Expect = 9e-09
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 163 KPPRGKLFYVPQRPY-MTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221
              R ++  + Q    ++  T+   V  P   ++  +  +    +TE L  V LG   + 
Sbjct: 78  TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV-KRRVTELLSLVGLGDKHDS 136

Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV- 280
                    +   LSGG+KQRVA+AR     P+  + DE TSA+      S+ E  +++ 
Sbjct: 137 ---------YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187

Query: 281 ---GITLFTVSH 289
              G+T+  ++H
Sbjct: 188 RRLGLTILLITH 199

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           E  + + L  +LNR             LSGG++QRVA+ R    +PQ  ++DE  S +  
Sbjct: 122 EVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172

Query: 268 DVEGSMYEYCREV----GITLFTVSH 289
            +   M    +++    G+T   V+H
Sbjct: 173 KLRVRMRAELKKLQRQLGVTTIYVTH 198

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 218 ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC 277
           IL   K           LSGG+ + V + R     P+  ++DE  + V+  +   ++ + 
Sbjct: 134 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193

Query: 278 REV---GITLFTVSH 289
            E+   GIT   + H
Sbjct: 194 LELKAKGITFLIIEH 208

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 235 LSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSH 289
           LSGGE+Q +A+ R    RP+  ++DE +  ++  +   ++E  +++   G T+  V  
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 166 RGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW 225
           R  + Y+P+           + +              +  +    +   L          
Sbjct: 74  RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL---------G 124

Query: 226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLF 285
           + + D +   S G  +++ +AR     P+ AILDE TS + V     + +  ++      
Sbjct: 125 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 184

Query: 286 TV 287
           T+
Sbjct: 185 TI 186

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 13/132 (9%)

Query: 162 TKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR 221
           T P    +  V Q   +       + +    K    +K + +  + +  + +QL ++L+R
Sbjct: 67  TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR 126

Query: 222 EKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV- 280
                        LSGG++QRVA+ R     P   +LDE  S +   +   M      + 
Sbjct: 127 ---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177

Query: 281 ---GITLFTVSH 289
              G T+  V+H
Sbjct: 178 KRLGRTMIYVTH 189

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 20/145 (13%)

Query: 156 LFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQL 215
             G  +      KL       +    + +    +       +     D   TE L  V  
Sbjct: 57  FAGQPLEAWSATKL-----ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 111

Query: 216 GYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYH-------RPQFAILDECTSAVSVD 268
              L      D +    + LSGGE QRV +A +            Q  +LDE  +++ V 
Sbjct: 112 ALAL-----DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166

Query: 269 VEGSMYEYCREV---GITLFTVSHR 290
            + ++ +    +   G+ +   SH 
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHD 191

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 191 HTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFY 250
                 ++K      + +  + +++ ++L+R             LSGGE+QRVA+AR   
Sbjct: 93  LEFGMRMKKIKDPKRVLDTARDLKIEHLLDR---------NPLTLSGGEQQRVALARALV 143

Query: 251 HRPQFAILDECTSAVSVDVEGSMYEYCREV----GITLFTVSH 289
             P+  +LDE  SA+    + +  E    +     +T+  ++H
Sbjct: 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 148 TLRDQLWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLT 207
              D+L    G  +  P   K+  V Q   +       + I        + K      + 
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122

Query: 208 EYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSV 267
           E  + + + ++LN          +   LSG ++QRVA+AR     P   +LDE  S +  
Sbjct: 123 EVAKILDIHHVLNH---------FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173

Query: 268 DVEGSMYEYCREV----GITLFTVSH 289
            +  S     +EV    G+TL  VSH
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSH 199

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREV-- 280
           G   + D     LSGGE+QRVA+AR    +P+  +LDE  SAV +  +G + E  R V  
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174

Query: 281 --GITLFTVSH 289
              + +  V+H
Sbjct: 175 EFDVPILHVTH 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.49
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.13
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.86
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.71
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.05
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.09
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.83
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.01

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.8e-47  Score=341.22  Aligned_cols=189  Identities=22%  Similarity=0.304  Sum_probs=168.6

Q ss_pred             cCCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         77 RNNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        77 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      .++.|+|+||+|+|+++..+       +|+||||+|++||+++|+        |+|  ||  |+++       +    .|
T Consensus        13 ~~g~I~~~nvsf~Y~~~~~~-------vL~~isl~i~~Ge~vaiv--------G~sGsGKSTLl~l-------l----~g   66 (255)
T d2hyda1          13 KQGRIDIDHVSFQYNDNEAP-------ILKDINLSIEKGETVAFV--------GMSGGGKSTLINL-------I----PR   66 (255)
T ss_dssp             CSCCEEEEEEEECSCSSSCC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHTT-------T----TT
T ss_pred             CCCEEEEEEEEEEeCCCCCc-------ceeceEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----Hh
Confidence            35679999999999876544       999999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +++|++|+|...           .|++|+||||+|++|++||+|||.++.       ...+++++.++++.+++.+++..
T Consensus        67 l~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~-------~~~~~~~~~~al~~~~l~~~i~~  139 (255)
T d2hyda1          67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-------PTATDEEVVEAAKMANAHDFIMN  139 (255)
T ss_dssp             SSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-------SSCCHHHHHHHHHHTTCHHHHHT
T ss_pred             cCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccC-------cCCCHHHHHHHHHHhCCHHHHHh
Confidence            999999998631           357899999999999999999999875       24567889999999999887755


Q ss_pred             -cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhc
Q psy11400        222 -EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHH  297 (298)
Q Consensus       222 -~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~  297 (298)
                       +.|+++..+ .+.+|||||||||+|||||+++|+++|||||||+||+.++..+++.+++  .++|+|+||||++.+++.
T Consensus       140 lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~  219 (255)
T d2hyda1         140 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA  219 (255)
T ss_dssp             STTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTC
T ss_pred             ccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhC
Confidence             789999876 7889999999999999999999999999999999999999999998875  489999999999988765


Q ss_pred             C
Q psy11400        298 E  298 (298)
Q Consensus       298 ~  298 (298)
                      |
T Consensus       220 D  220 (255)
T d2hyda1         220 D  220 (255)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-47  Score=337.42  Aligned_cols=185  Identities=19%  Similarity=0.233  Sum_probs=165.1

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      |+|+||||+|+.+..+       +|+||||+|++||+++|+        |+|  ||  |+++       +    .|+++|
T Consensus         2 I~~~nvsf~Y~~~~~~-------vL~~isl~i~~Ge~vaIv--------G~sGsGKSTLl~l-------l----~gl~~p   55 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPV-------ILDNINLSIKQGEVIGIV--------GRSGSGKSTLTKL-------I----QRFYIP   55 (241)
T ss_dssp             EEEEEEEEESSTTSCE-------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSCC
T ss_pred             eEEEEEEEEeCCCCcc-------eEeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HhcCCC
Confidence            7899999999765543       999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCC
Q psy11400        157 FGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKG  224 (298)
Q Consensus       157 ~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g  224 (298)
                      ++|+|...           .|++|+||||+|++|++|++|||.++.       ...+.+++.++++.+++.+++.. +.|
T Consensus        56 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~  128 (241)
T d2pmka1          56 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN-------PGMSVEKVIYAAKLAGAHDFISELREG  128 (241)
T ss_dssp             SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTS-------TTCCHHHHHHHHHHHTCHHHHTTSTTG
T ss_pred             CCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccC-------ccccHHHHHHHHHHHhhHHHHHhhhcc
Confidence            99998642           256899999999999999999999874       34567889999999999887765 788


Q ss_pred             cccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        225 WDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       225 ~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      +++..+ .+.+|||||||||+|||||+++|++||||||||+||+.++..+++.+++  .++|+|+||||++.++..|
T Consensus       129 ~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D  205 (241)
T d2pmka1         129 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNAD  205 (241)
T ss_dssp             GGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSS
T ss_pred             hhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCC
Confidence            898776 7789999999999999999999999999999999999999999998876  4899999999999887643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=5.7e-47  Score=337.12  Aligned_cols=186  Identities=23%  Similarity=0.342  Sum_probs=162.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||||+|++++.        +|+||||+|++||+++|+        |||  ||  |+++       +    .|+++
T Consensus         1 mle~knvsf~Y~~~~~--------vL~~isl~i~~Ge~vaiv--------G~sGsGKSTLl~l-------l----~gl~~   53 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQ--------ILRDISFEAQPNSIIAFA--------GPSGGGKSTIFSL-------L----ERFYQ   53 (242)
T ss_dssp             CEEEEEEEECSSSSSC--------SEEEEEEEECTTEEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             CEEEEEEEEECCCCCc--------eeeeeEEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----HHhhC
Confidence            4899999999986555        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec-----------cCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cC
Q psy11400        156 LFGGTVTK-----------PPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EK  223 (298)
Q Consensus       156 ~~~G~i~~-----------~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~  223 (298)
                      |++|+|..           ..|++|+||||+|++|++|++||+.++..      ....++.+.++++.+++.++... +.
T Consensus        54 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (242)
T d1mv5a_          54 PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE------GDYTDEDLWQVLDLAFARSFVENMPD  127 (242)
T ss_dssp             CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT------SCSCHHHHHHHHHHHTCTTTTTSSTT
T ss_pred             CCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccc------cccchhhHHHHHHHHHhhhhhccCcc
Confidence            99999853           24678999999999999999999988642      23567778888998888776544 77


Q ss_pred             Ccccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        224 GWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       224 g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      ++++..+ .+.+|||||||||+|||||+++|++||||||||+||+.++..+++.+++  .++|+|+||||++.+++.|
T Consensus       128 ~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D  205 (242)
T d1mv5a_         128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDAD  205 (242)
T ss_dssp             GGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCS
T ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCC
Confidence            8888765 6789999999999999999999999999999999999999988888776  4899999999999887643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.8e-46  Score=333.82  Aligned_cols=189  Identities=20%  Similarity=0.261  Sum_probs=167.7

Q ss_pred             CCcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQL  153 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l  153 (298)
                      .+.|+|+||+|+|++...+       +|+|+||+|++||++||+        |||  ||  |+++       +    .|+
T Consensus        11 ~g~I~~~nvsf~Y~~~~~~-------~L~~isl~i~~Ge~iaiv--------G~sGsGKSTLl~l-------l----~gl   64 (253)
T d3b60a1          11 TGDLEFRNVTFTYPGREVP-------ALRNINLKIPAGKTVALV--------GRSGSGKSTIASL-------I----TRF   64 (253)
T ss_dssp             CCCEEEEEEEECSSSSSCC-------SEEEEEEEECTTCEEEEE--------ECTTSSHHHHHHH-------H----TTT
T ss_pred             ceEEEEEEEEEEeCCCCCc-------eeeceEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hcc
Confidence            3569999999999865543       999999999999999999        999  99  9999       8    999


Q ss_pred             cccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-
Q psy11400        154 WPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-  221 (298)
Q Consensus       154 ~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-  221 (298)
                      ++|++|+|...           .+++|+||||+|++|.+|+++|+.++..      ...+++++.++++.+++.+++++ 
T Consensus        65 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~------~~~~~~~i~~a~~~~~l~~~i~~l  138 (253)
T d3b60a1          65 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART------EEYSREQIEEAARMAYAMDFINKM  138 (253)
T ss_dssp             TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT------SCCCHHHHHHHHHTTTCHHHHHHS
T ss_pred             cCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCc------ccCCHHHHHHHHHHHhHHHHHHhc
Confidence            99999998632           2567999999999999999999998642      24567889999999999888766 


Q ss_pred             cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhhcC
Q psy11400        222 EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       222 ~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      |.|+++..+ .+.+|||||||||+|||||+++|++||||||||+||+.++..+++.+++  .++|+|+||||++.+++.|
T Consensus       139 ~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D  218 (253)
T d3b60a1         139 DNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQAD  218 (253)
T ss_dssp             TTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCS
T ss_pred             cccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCC
Confidence            789999876 7889999999999999999999999999999999999999999998875  3899999999999887653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-45  Score=329.19  Aligned_cols=189  Identities=22%  Similarity=0.273  Sum_probs=163.5

Q ss_pred             CCcEEEeeeeEecCCCC-CCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccc
Q psy11400         78 NNLRGRLGITLGLRSGG-LGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQ  152 (298)
Q Consensus        78 ~~~i~~~~v~~~~~~~~-~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~  152 (298)
                      ++.|+|+||+|+||+.. ..       +|+|+||+|++||+++|+        |||  ||  |+++       +    .|
T Consensus         9 ~g~I~~~nvsf~Y~~~~~~~-------vL~~isl~i~~Ge~vaiv--------G~sGsGKSTLl~l-------i----~g   62 (251)
T d1jj7a_           9 EGLVQFQDVSFAYPNRPDVL-------VLQGLTFTLRPGEVTALV--------GPNGSGKSTVAAL-------L----QN   62 (251)
T ss_dssp             CCCEEEEEEEECCTTSTTCC-------SEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TT
T ss_pred             cceEEEEEEEEECCCCCCCE-------eEeceEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hc
Confidence            45799999999998542 22       899999999999999999        999  99  9999       8    99


Q ss_pred             ccccCCceeecc-----------CCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh
Q psy11400        153 LWPLFGGTVTKP-----------PRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR  221 (298)
Q Consensus       153 l~~~~~G~i~~~-----------~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~  221 (298)
                      +++|++|+|...           .|++|+||||+|++|++|++||+.++..      ......++.++++..++.+++..
T Consensus        63 l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~------~~~~~~~~~~~~~~~~~~~~i~~  136 (251)
T d1jj7a_          63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLT------QKPTMEEITAAAVKSGAHSFISG  136 (251)
T ss_dssp             SSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCS------SCCCHHHHHHHHHHHTCHHHHHT
T ss_pred             ccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhc------ccchHHHHHHHHHHHHHHHHHHh
Confidence            999999998532           2567999999999999999999999752      23456677777888888777655


Q ss_pred             -cCCcccccc-cCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        222 -EKGWDTVAD-WIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       222 -~~g~d~~~~-~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                       +.|+++..+ .+.+|||||||||+|||||+++|+++|||||||+||+.++..+.+.+++    .++|+|+||||+++++
T Consensus       137 l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~  216 (251)
T d1jj7a_         137 LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE  216 (251)
T ss_dssp             STTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH
T ss_pred             ccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH
Confidence             678888765 7889999999999999999999999999999999999999999998864    3899999999999887


Q ss_pred             hcC
Q psy11400        296 HHE  298 (298)
Q Consensus       296 ~~~  298 (298)
                      +.|
T Consensus       217 ~aD  219 (251)
T d1jj7a_         217 QAD  219 (251)
T ss_dssp             TCS
T ss_pred             hCC
Confidence            643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1e-43  Score=314.67  Aligned_cols=181  Identities=22%  Similarity=0.223  Sum_probs=151.6

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||++.|+.+...       +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         3 ~i~v~nlsk~y~~g~~~-------aL~~vsl~i~~Ge~~~ii--------G~sGsGKSTll~~-------i----~gl~~   56 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVV-------ALDNVNINIENGERFGIL--------GPSGAGKTTFMRI-------I----AGLDV   56 (242)
T ss_dssp             CEEEEEEEEEEGGGTEE-------EEEEEEEEECTTCEEEEE--------CSCHHHHHHHHHH-------H----HTSSC
T ss_pred             EEEEEeEEEEECCCCEE-------EEeceEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----HcCcC
Confidence            48999999999765543       899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec--------------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTK--------------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~--------------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|..              ..+++||||||++.+|+ .|++|||.++...... .....++++.++++.+++.++.+
T Consensus        57 p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~  135 (242)
T d1oxxk2          57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM-SKEEIRKRVEEVAKILDIHHVLN  135 (242)
T ss_dssp             CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC-CHHHHHHHHHHHHHHTTCGGGTT
T ss_pred             CCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcC-CHHHHHHHHHHHHhhcChHhhhh
Confidence            99999752              12567999999998875 6999999987532211 01112456889999999987776


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      +.         +.+|||||||||+|||||+++|++|||||||++||+.+...+.+++++    .|+|+|+|||+++.+..
T Consensus       136 ~~---------p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~  206 (242)
T d1oxxk2         136 HF---------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA  206 (242)
T ss_dssp             SC---------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             CC---------hhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHH
Confidence            63         789999999999999999999999999999999999988888776543    49999999999997754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.2e-43  Score=309.89  Aligned_cols=183  Identities=21%  Similarity=0.208  Sum_probs=147.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||++.|+.+...     ..+|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         1 mI~i~nlsk~y~~~~~~-----~~al~~isl~i~~Ge~~~ii--------G~sGsGKSTLl~~-------i----~gl~~   56 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEI-----IYALKNVNLNIKEGEFVSIM--------GPSGSGKSTMLNI-------I----GCLDK   56 (230)
T ss_dssp             CEEEEEEEEEEEETTEE-----EEEEEEEEEEECTTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSC
T ss_pred             CEEEEeEEEEeCCCCee-----EEEEeceEEEEcCCCEEEEE--------CCCCCCcchhhHh-------c----cCCCC
Confidence            48999999999754311     12799999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC---------------CCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCC----HHHHHHHHHHcCC
Q psy11400        156 LFGGTVTKPP---------------RGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGIT----DADLTEYLQKVQL  215 (298)
Q Consensus       156 ~~~G~i~~~~---------------r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l  215 (298)
                      |++|+|....               +++||||||++.++ ..|++||+.++.....  ....+    .+++.+.++.+++
T Consensus        57 p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~L  134 (230)
T d1l2ta_          57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY--RGAMSGEERRKRALECLKMAEL  134 (230)
T ss_dssp             CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCC--SSCCCHHHHHHHHHHHHHHTTC
T ss_pred             CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhc--cCCCCHHHHHHHHHHHHHhhch
Confidence            9999986321               24699999999876 4699999987642110  01112    3456777888888


Q ss_pred             ch-hhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecC
Q psy11400        216 GY-ILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHR  290 (298)
Q Consensus       216 ~~-~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~  290 (298)
                      .+ +.++         ++.+|||||||||+|||||+++|++||||||||+||+.+...+++++++    .|+|+|+|||+
T Consensus       135 ~~~~~~~---------~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  205 (230)
T d1l2ta_         135 EERFANH---------KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD  205 (230)
T ss_dssp             CGGGTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             hhhhhcC---------ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCC
Confidence            64 3443         3789999999999999999999999999999999999999999887664    48999999999


Q ss_pred             cchhhhc
Q psy11400        291 KSLWTHH  297 (298)
Q Consensus       291 l~~~~~~  297 (298)
                      ++.+++.
T Consensus       206 ~~~a~~~  212 (230)
T d1l2ta_         206 INVARFG  212 (230)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHhC
Confidence            9987643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-43  Score=310.47  Aligned_cols=178  Identities=20%  Similarity=0.234  Sum_probs=119.9

Q ss_pred             EEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccccc
Q psy11400         81 RGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPL  156 (298)
Q Consensus        81 i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~  156 (298)
                      |+++||+++|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+|
T Consensus         1 Iev~nv~k~yg~-~~--------~l~~isl~i~~Gei~~li--------GpsGsGKSTLl~~-------i----~Gl~~p   52 (232)
T d2awna2           1 VQLQNVTKAWGE-VV--------VSKDINLDIHEGEFVVFV--------GPSGCGKSTLLRM-------I----AGLETI   52 (232)
T ss_dssp             EEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSCC
T ss_pred             CEEEEEEEEECC-EE--------EEeeeEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCCC
Confidence            689999999952 33        999999999999999999        999  99  9999       8    999999


Q ss_pred             CCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcc
Q psy11400        157 FGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWD  226 (298)
Q Consensus       157 ~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d  226 (298)
                      ++|+|..         +.+++||||||++.+++ .|++||+.++...... .....++++.++++.+++.++.+++    
T Consensus        53 ~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~l~~~~~~~----  127 (232)
T d2awna2          53 TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK----  127 (232)
T ss_dssp             SEEEEEESSSCCTTSCGGGTCEEEECSSCCC----------------------CHHHHHHHHHHHHC-------------
T ss_pred             CCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCChhhhhCC----
Confidence            9999853         23567999999998874 6999999998643221 1122346789999999998877664    


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        227 TVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       227 ~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                           +.+|||||||||+|||||+++|++|||||||+|||+.+...+++.+++    .|+|+|+|||+++.+..
T Consensus       128 -----~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~  196 (232)
T d2awna2         128 -----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT  196 (232)
T ss_dssp             -----------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred             -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence                 789999999999999999999999999999999999999888876653    59999999999987754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=6.4e-43  Score=307.40  Aligned_cols=175  Identities=18%  Similarity=0.224  Sum_probs=151.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++|||++|+  ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+.+
T Consensus         1 mi~v~nlsk~y~--~~--------aL~~vs~~i~~Ge~~~li--------GpsGaGKSTll~~-------l----~Gl~~   51 (229)
T d3d31a2           1 MIEIESLSRKWK--NF--------SLDNLSLKVESGEYFVIL--------GPTGAGKTLFLEL-------I----AGFHV   51 (229)
T ss_dssp             CEEEEEEEEECS--SC--------EEEEEEEEECTTCEEEEE--------CCCTHHHHHHHHH-------H----HTSSC
T ss_pred             CEEEEEEEEEeC--CE--------EEeeeEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hcCcC
Confidence            479999999995  34        899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTKP---------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~~---------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|...         .+++||||||++.+|+ .||+||+.++....    .....+++.++++.+++.++.+++   
T Consensus        52 p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~---  124 (229)
T d3d31a2          52 PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK----KIKDPKRVLDTARDLKIEHLLDRN---  124 (229)
T ss_dssp             CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH----CCCCHHHHHHHHHHTTCTTTTTSC---
T ss_pred             CCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhc----cccHHHHHHHHHHHhcchhhHhCC---
Confidence            999998632         2457999999999885 69999999875321    223567899999999998877664   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                            +.+|||||||||+|||||+++|++|||||||||||+.+...+++++++    .|+|+|+|||+++.+..
T Consensus       125 ------~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~  193 (229)
T d3d31a2         125 ------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI  193 (229)
T ss_dssp             ------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ------hhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHH
Confidence                  689999999999999999999999999999999999999888877643    48999999999987764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.9e-43  Score=309.47  Aligned_cols=179  Identities=20%  Similarity=0.195  Sum_probs=146.0

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||+++|++ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++
T Consensus         6 ~I~v~nlsk~yg~-~~--------al~~vsl~v~~Ge~~~li--------GpsGaGKSTLl~~-------i----~Gl~~   57 (239)
T d1v43a3           6 EVKLENLTKRFGN-FT--------AVNKLNLTIKDGEFLVLL--------GPSGCGKTTTLRM-------I----AGLEE   57 (239)
T ss_dssp             CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----HTSSC
T ss_pred             eEEEEEEEEEECC-EE--------EEcceeEEECCCCEEEEE--------CCCCChHHHHHHH-------H----HcCCC
Confidence            4899999999952 33        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeec---------cCCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCc
Q psy11400        156 LFGGTVTK---------PPRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGW  225 (298)
Q Consensus       156 ~~~G~i~~---------~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~  225 (298)
                      |++|+|..         +.+++||||||++.+|+ .|++||+.++...... .+...++++.++++.+++.++.+++   
T Consensus        58 p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~---  133 (239)
T d1v43a3          58 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNRY---  133 (239)
T ss_dssp             CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTSC---
T ss_pred             CCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhcCC---
Confidence            99999853         23567999999998874 6999999987643211 0111245678899999998877664   


Q ss_pred             ccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        226 DTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       226 d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                            +.+|||||||||+|||||+.+|++|||||||||||+.+...+++++++    .|+|+|+|||+++.+..
T Consensus       134 ------~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~  202 (239)
T d1v43a3         134 ------PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT  202 (239)
T ss_dssp             ------TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred             ------hhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence                  789999999999999999999999999999999999999988877654    49999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.6e-43  Score=309.96  Aligned_cols=183  Identities=24%  Similarity=0.244  Sum_probs=151.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +|+++||++.|+.+..     ...+|+|+||+|++||+++|+        |||  ||  |+++       +    .|+.+
T Consensus         1 mi~v~nlsk~y~~~~~-----~~~al~~vsl~i~~Ge~~~ii--------G~sGsGKSTLl~~-------i----~Gl~~   56 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTR-----TIQALNNVSLHVPAGQIYGVI--------GASGAGKSTLIRC-------V----NLLER   56 (240)
T ss_dssp             CEEEEEEEEEEECSSC-----EEEEEEEEEEEECSSCEEEEE--------ESTTSSHHHHHHH-------H----TTSSC
T ss_pred             CEEEEeEEEEeCCCCe-----eEEEeeceeEEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----cCCcc
Confidence            4899999999975431     012899999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc--------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhh
Q psy11400        156 LFGGTVTKP--------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILN  220 (298)
Q Consensus       156 ~~~G~i~~~--------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~  220 (298)
                      |++|+|...              .|++||||||++.+++ .|++||+.++...... ......+++.++++.++|.+..+
T Consensus        57 p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~-~~~~~~~~v~~~L~~vgL~~~~~  135 (240)
T d3dhwc1          57 PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHD  135 (240)
T ss_dssp             CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTC-CTTHHHHHHHHHHHHHSTTTTTS
T ss_pred             ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhh
Confidence            999998531              1357999999998775 6999999986432211 11112467889999999987665


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      ++         +.+|||||||||+|||||+.+|++|||||||++||+.+...+++++++    .|+|+|+|||+++.+..
T Consensus       136 ~~---------~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~  206 (240)
T d3dhwc1         136 SY---------PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR  206 (240)
T ss_dssp             SC---------BSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHH
T ss_pred             CC---------hhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHH
Confidence            53         789999999999999999999999999999999999999998887654    49999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.2e-42  Score=307.76  Aligned_cols=179  Identities=20%  Similarity=0.220  Sum_probs=150.1

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||++.|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+.+
T Consensus         3 ~i~v~nl~k~yg~-~~--------al~~vsl~i~~Ge~~~li--------G~sGaGKSTll~~-------i----~gl~~   54 (240)
T d1g2912           3 GVRLVDVWKVFGE-VT--------AVREMSLEVKDGEFMILL--------GPSGCGKTTTLRM-------I----AGLEE   54 (240)
T ss_dssp             EEEEEEEEEEETT-EE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----HTSSC
T ss_pred             cEEEEeEEEEECC-EE--------EEcceeeEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hcCCC
Confidence            4899999999952 33        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc---------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhh
Q psy11400        156 LFGGTVTKP---------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYIL  219 (298)
Q Consensus       156 ~~~G~i~~~---------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~  219 (298)
                      |++|+|...               .+++||||||+|.+++ .|++||+.++...... .....++++.++++.+++.++.
T Consensus        55 p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~-~~~e~~~~v~~~l~~~~l~~~~  133 (240)
T d1g2912          55 PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELL  133 (240)
T ss_dssp             CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGT
T ss_pred             CCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCC-CHHHHHHHHHHHHHHcCChhHh
Confidence            999998521               2467999999998875 5999999987532110 0111235688999999998776


Q ss_pred             hhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhh
Q psy11400        220 NREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWT  295 (298)
Q Consensus       220 ~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~  295 (298)
                      +++         +.+|||||||||+|||||+++|++|||||||+|||+.+...+++++++    .|+|+|+|||+++.+.
T Consensus       134 ~~~---------p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~  204 (240)
T d1g2912         134 NRK---------PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM  204 (240)
T ss_dssp             TCC---------GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred             cCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHH
Confidence            653         789999999999999999999999999999999999999988887654    4999999999998875


Q ss_pred             h
Q psy11400        296 H  296 (298)
Q Consensus       296 ~  296 (298)
                      .
T Consensus       205 ~  205 (240)
T d1g2912         205 T  205 (240)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.5e-40  Score=297.91  Aligned_cols=180  Identities=21%  Similarity=0.211  Sum_probs=146.8

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||+++|. +..        +|+||||+|++||+++|+        |||  ||  |+++       +    .|+.+
T Consensus         2 ~Lev~nl~k~yg-~~~--------al~~vs~~i~~GEi~~ii--------G~sGsGKSTLl~~-------i----~Gl~~   53 (258)
T d1b0ua_           2 KLHVIDLHKRYG-GHE--------VLKGVSLQARAGDVISII--------GSSGSGKSTFLRC-------I----NFLEK   53 (258)
T ss_dssp             CEEEEEEEEEET-TEE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEEEEEEEEC-CEE--------EEcceeeEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----HcCcc
Confidence            489999999994 233        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------------------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHH
Q psy11400        156 LFGGTVTKP------------------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYL  210 (298)
Q Consensus       156 ~~~G~i~~~------------------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l  210 (298)
                      |++|+|...                        .+++||||||+|.+++ .|+.||+.++.............+++.+++
T Consensus        54 p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l  133 (258)
T d1b0ua_          54 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL  133 (258)
T ss_dssp             CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             CCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHH
Confidence            999998521                        1356999999998775 699999987521100000111245678889


Q ss_pred             HHcCCchh-hhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEE
Q psy11400        211 QKVQLGYI-LNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFT  286 (298)
Q Consensus       211 ~~~~l~~~-~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIi  286 (298)
                      +.+++.+. .++         .+.+|||||||||+|||||+.+|++|||||||+|||+.+...+++++++   .|+|+|+
T Consensus       134 ~~~~l~~~~~~~---------~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~  204 (258)
T d1b0ua_         134 AKVGIDERAQGK---------YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV  204 (258)
T ss_dssp             HHTTCCHHHHTS---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHcCCchhhhcc---------CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEE
Confidence            99999764 343         2679999999999999999999999999999999999999988887664   5899999


Q ss_pred             EecCcchhhh
Q psy11400        287 VSHRKSLWTH  296 (298)
Q Consensus       287 itH~l~~~~~  296 (298)
                      |||+++.+..
T Consensus       205 vtHdl~~~~~  214 (258)
T d1b0ua_         205 VTHEMGFARH  214 (258)
T ss_dssp             ECSCHHHHHH
T ss_pred             EeCCHHHHHH
Confidence            9999998764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-40  Score=298.12  Aligned_cols=180  Identities=18%  Similarity=0.259  Sum_probs=150.1

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      ..+.|+|+++.   +.+        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|++
T Consensus        37 ~~i~~~~~~~~---g~p--------vL~~isl~i~~Ge~vaiv--------G~nGsGKSTLl~~-------i----~Gl~   86 (281)
T d1r0wa_          37 NNVSFSHLCLV---GNP--------VLKNINLNIEKGEMLAIT--------GSTGSGKTSLLML-------I----LGEL   86 (281)
T ss_dssp             ---CHHHHHHT---TCE--------EEEEEEEEECTTCEEEEE--------ESTTSSHHHHHHH-------H----HTSS
T ss_pred             CcEEEEEcCCC---CCe--------EEeCeEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hCCC
Confidence            34666666643   344        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeeccCCCcEEEEcCcCCCCCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhh-cCCcccccc-cC
Q psy11400        155 PLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNR-EKGWDTVAD-WI  232 (298)
Q Consensus       155 ~~~~G~i~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~d~~~~-~~  232 (298)
                      +|++|+|...  .+|+|+||++++|++|++||+.++.        ........++++.+++...+.. +.++++..+ .+
T Consensus        87 ~p~~G~I~~~--g~i~~v~Q~~~l~~~tv~eni~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~  156 (281)
T d1r0wa_          87 EASEGIIKHS--GRVSFCSQFSWIMPGTIKENIIFGV--------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG  156 (281)
T ss_dssp             CCSEEEEECC--SCEEEECSSCCCCSEEHHHHHTTTS--------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC
T ss_pred             cCCCcEEEEC--CEEEEEeccccccCceeeccccccc--------cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhc
Confidence            9999999765  3699999999999999999999874        2345667788888888765544 566777655 67


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHH-Hh--cCcEEEEEecCcchhhhcC
Q psy11400        233 DVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYC-RE--VGITLFTVSHRKSLWTHHE  298 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l-~~--~~~TiIiitH~l~~~~~~~  298 (298)
                      .+|||||||||+|||||+++|++||||||||+||+.++..+++.+ ..  .++|+|+||||++.+++.|
T Consensus       157 ~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aD  225 (281)
T d1r0wa_         157 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD  225 (281)
T ss_dssp             TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCS
T ss_pred             cCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCC
Confidence            899999999999999999999999999999999999999988753 32  4899999999999877543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=2.4e-39  Score=287.34  Aligned_cols=179  Identities=17%  Similarity=0.141  Sum_probs=142.6

Q ss_pred             CcEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCcccccccccccc
Q psy11400         79 NLRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLW  154 (298)
Q Consensus        79 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~  154 (298)
                      .+++++||++.|. +..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|++
T Consensus         5 ~~Lev~~l~k~yg-~~~--------al~~vs~~i~~Gei~~li--------GpnGaGKSTl~~~-------i----~Gl~   56 (240)
T d1ji0a_           5 IVLEVQSLHVYYG-AIH--------AIKGIDLKVPRGQIVTLI--------GANGAGKTTTLSA-------I----AGLV   56 (240)
T ss_dssp             EEEEEEEEEEEET-TEE--------EEEEEEEEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSS
T ss_pred             eEEEEeeEEEEEC-CEE--------EEeeeeEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC
Confidence            3689999999995 233        999999999999999999        999  99  9999       8    9999


Q ss_pred             ccCCceeecc------------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHc-CCchhhh
Q psy11400        155 PLFGGTVTKP------------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKV-QLGYILN  220 (298)
Q Consensus       155 ~~~~G~i~~~------------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~  220 (298)
                      +|++|+|...            .+..|+|+||++.+|+ .|++||+.++.....  ......+++.++++.+ ++.+..+
T Consensus        57 ~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~  134 (240)
T d1ji0a_          57 RAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK--DKEGIKRDLEWIFSLFPRLKERLK  134 (240)
T ss_dssp             CCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC--CSSHHHHHHHHHHHHCHHHHTTTT
T ss_pred             CCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhChHHHHh
Confidence            9999998632            1345999999998875 699999987542110  0111123445555554 3444443


Q ss_pred             hcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        221 REKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       221 ~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                      +         .+.+|||||||||+|||||+++|++|||||||+|||+.+...+++++++   .|+|||+|||+++.+..
T Consensus       135 ~---------~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~  204 (240)
T d1ji0a_         135 Q---------LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALK  204 (240)
T ss_dssp             S---------BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred             C---------chhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            3         3689999999999999999999999999999999999999998887664   48999999999987643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.8e-39  Score=288.42  Aligned_cols=180  Identities=18%  Similarity=0.185  Sum_probs=146.3

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      +++++||+++|. +..        +|+||||+|++||+++|+        |||  ||  |+++       +    .|+++
T Consensus         4 iL~v~nlsk~yg-~~~--------aL~~vs~~v~~Gei~~li--------G~nGaGKSTLl~~-------i----~Gl~~   55 (254)
T d1g6ha_           4 ILRTENIVKYFG-EFK--------ALDGVSISVNKGDVTLII--------GPNGSGKSTLINV-------I----TGFLK   55 (254)
T ss_dssp             EEEEEEEEEEET-TEE--------EEEEECCEEETTCEEEEE--------CSTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEEEEEEEEC-CeE--------EEcceEEEECCCCEEEEE--------CCCCCcHHHHHHH-------H----HCCCc
Confidence            589999999995 233        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeeccC------------CCcEEEEcCcCCCC-CCCHHHHHccCCcchh------hh-h-c-CCC---HHHHHHHH
Q psy11400        156 LFGGTVTKPP------------RGKLFYVPQRPYMT-LGTLRDQVIYPHTKED------MI-Q-K-GIT---DADLTEYL  210 (298)
Q Consensus       156 ~~~G~i~~~~------------r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~------~~-~-~-~~~---~~~i~~~l  210 (298)
                      |++|+|....            +..|+|+||+|.++ ..|++||+.++.....      .. . . ...   .+++.+++
T Consensus        56 p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (254)
T d1g6ha_          56 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL  135 (254)
T ss_dssp             CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred             CCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHH
Confidence            9999986321            23599999999876 5699999987532110      00 0 0 111   24566778


Q ss_pred             HHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEE
Q psy11400        211 QKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTV  287 (298)
Q Consensus       211 ~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIii  287 (298)
                      +.+++.+..+++         +.+|||||||||+|||||+++|++|||||||+|||+.....+++++++   .|+|||+|
T Consensus       136 ~~~~l~~~~~~~---------~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~v  206 (254)
T d1g6ha_         136 EFLKLSHLYDRK---------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII  206 (254)
T ss_dssp             HHTTCGGGTTSB---------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HhcCcchhccCc---------hhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            888887766553         679999999999999999999999999999999999999988887654   59999999


Q ss_pred             ecCcchhhh
Q psy11400        288 SHRKSLWTH  296 (298)
Q Consensus       288 tH~l~~~~~  296 (298)
                      ||+++.+..
T Consensus       207 sHdl~~~~~  215 (254)
T d1g6ha_         207 EHRLDIVLN  215 (254)
T ss_dssp             CSCCSTTGG
T ss_pred             eCcHHHHHH
Confidence            999997753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.6e-39  Score=283.34  Aligned_cols=179  Identities=17%  Similarity=0.132  Sum_probs=147.4

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|.++|++++|.+ ..        +|+|+||+|++||+++|+        |||  ||  |+++       +    .|+++
T Consensus         2 aI~v~nl~k~yg~-~~--------vl~~vs~~v~~Gei~glv--------G~nGaGKSTLl~~-------l----~G~~~   53 (238)
T d1vpla_           2 AVVVKDLRKRIGK-KE--------ILKGISFEIEEGEIFGLI--------GPNGAGKTTTLRI-------I----STLIK   53 (238)
T ss_dssp             CEEEEEEEEEETT-EE--------EEEEEEEEECTTCEEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             CEEEEeEEEEECC-EE--------EEccceeEEcCCCEEEEE--------CCCCCCHHHHHHH-------H----hcCCC
Confidence            5899999999953 33        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc----------CCCcEEEEcCcCCCC-CCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCC
Q psy11400        156 LFGGTVTKP----------PRGKLFYVPQRPYMT-LGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKG  224 (298)
Q Consensus       156 ~~~G~i~~~----------~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g  224 (298)
                      |++|+|...          .++.++||||++.++ +.|+.||+.+....... ......+.++++++.+++.+..+++  
T Consensus        54 p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~--  130 (238)
T d1vpla_          54 PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDR--  130 (238)
T ss_dssp             CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSB--
T ss_pred             CCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHHhhh--
Confidence            999998632          246799999999776 46999999764321100 0001134567788888888766653  


Q ss_pred             cccccccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcchhhh
Q psy11400        225 WDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       225 ~d~~~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~~~~  296 (298)
                             +.+||||||||++|||||+++|++|||||||+|||+.++..+++++++   .|+|||++||+++.+..
T Consensus       131 -------~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~  198 (238)
T d1vpla_         131 -------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF  198 (238)
T ss_dssp             -------GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred             -------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence                   679999999999999999999999999999999999999998888754   58999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.4e-38  Score=278.58  Aligned_cols=158  Identities=25%  Similarity=0.333  Sum_probs=134.1

Q ss_pred             eeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccccCCceeec---------cCCCcEEEEc
Q psy11400        107 DYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWPLFGGTVTK---------PPRGKLFYVP  173 (298)
Q Consensus       107 ~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~~~~G~i~~---------~~r~~i~~v~  173 (298)
                      |+||+++ +|+++|+        |||  ||  |+++       +    +|+.+|++|+|..         +.+++|||||
T Consensus        17 ~vs~~~~-~e~~~li--------GpnGaGKSTll~~-------i----~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~   76 (240)
T d2onka1          17 NVDFEMG-RDYCVLL--------GPTGAGKSVFLEL-------I----AGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             EEEEEEC-SSEEEEE--------CCTTSSHHHHHHH-------H----HTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             EEEEEeC-CEEEEEE--------CCCCChHHHHHHH-------H----HcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence            8999995 6899999        999  99  9999       8    9999999999853         2367899999


Q ss_pred             CcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccccccCCCCChhHHHHHHHHHHHhcC
Q psy11400        174 QRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHR  252 (298)
Q Consensus       174 Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~~~~~~~LSgGqkQRlaiARaL~~~  252 (298)
                      |++.+|+ .||+||+.|+.....   ....++++.++++.+++.++.++.         +.+|||||||||+|||||+++
T Consensus        77 Q~~~l~~~ltV~enl~~~l~~~~---~~~~~~~v~~~l~~~gl~~~~~~~---------~~~LSGG~kQRvaiAral~~~  144 (240)
T d2onka1          77 QDYALFPHLSVYRNIAYGLRNVE---RVERDRRVREMAEKLGIAHLLDRK---------PARLSGGERQRVALARALVIQ  144 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCTTSC---HHHHHHHHHHHHHTTTCTTTTTCC---------GGGSCHHHHHHHHHHHHHTTC
T ss_pred             cchhhcccchhhHhhhhhhcccC---HHHHHHHHHHHHHhcCcHhhhhCC---------hhhCCHHHHHHHHHHHHHhcc
Confidence            9998875 699999999863211   111245688999999998777663         789999999999999999999


Q ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHh----cCcEEEEEecCcchhhh
Q psy11400        253 PQFAILDECTSAVSVDVEGSMYEYCRE----VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       253 P~iliLDEPTs~LD~~~~~~i~~~l~~----~~~TiIiitH~l~~~~~  296 (298)
                      |++|||||||||||+.+...+++.+++    .|+|+|+|||+++.+..
T Consensus       145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~  192 (240)
T d2onka1         145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM  192 (240)
T ss_dssp             CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred             CCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            999999999999999999988887654    48999999999987654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=8e-36  Score=257.84  Aligned_cols=171  Identities=16%  Similarity=0.226  Sum_probs=138.5

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .|+++||+++|.  ++        +|+|+||+|++||+++|+        |||  ||  |+++       +    +|+++
T Consensus         2 ~lev~~ls~~y~--~~--------vl~~is~~i~~Gei~~l~--------G~NGsGKSTLl~~-------i----~gl~~   52 (200)
T d1sgwa_           2 KLEIRDLSVGYD--KP--------VLERITMTIEKGNVVNFH--------GPNGIGKTTLLKT-------I----STYLK   52 (200)
T ss_dssp             EEEEEEEEEESS--SE--------EEEEEEEEEETTCCEEEE--------CCTTSSHHHHHHH-------H----TTSSC
T ss_pred             eEEEEEEEEEeC--Ce--------EEeceEEEEcCCCEEEEE--------CCCCChHHHHHHH-------H----hcccc
Confidence            489999999993  34        999999999999999999        999  99  9999       8    99999


Q ss_pred             cCCceeecc------CCCcEEEEcCcCCCCC-CCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcCCcccc
Q psy11400        156 LFGGTVTKP------PRGKLFYVPQRPYMTL-GTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTV  228 (298)
Q Consensus       156 ~~~G~i~~~------~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~d~~  228 (298)
                      |++|+|...      .+.+++|+||++.++. .|+.+++.+.....   .....++++.++++.+++.++.+        
T Consensus        53 p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--------  121 (200)
T d1sgwa_          53 PLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNEIMDALESVEVLDLKK--------  121 (200)
T ss_dssp             CSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT---TCCCCHHHHHHHHHHTTCCCTTS--------
T ss_pred             cCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhc---CCccCHHHHHHHHHHcCCccccc--------
Confidence            999998642      3567999999998764 59999986532111   12345677888888887754322        


Q ss_pred             cccCCCCChhHHHHHHHHHHHhcCCCEEEEeccccCCCHHHHHHHHHHHH----hcCcEEEEEecCcc
Q psy11400        229 ADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCR----EVGITLFTVSHRKS  292 (298)
Q Consensus       229 ~~~~~~LSgGqkQRlaiARaL~~~P~iliLDEPTs~LD~~~~~~i~~~l~----~~~~TiIiitH~l~  292 (298)
                        ++.+||||||||++|||||+++|+++||||||+|||+.++..+++.+.    +.+.++|+++|+++
T Consensus       122 --~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~  187 (200)
T d1sgwa_         122 --KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS  187 (200)
T ss_dssp             --BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred             --ccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh
Confidence              256899999999999999999999999999999999998887776554    34677777777765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-33  Score=248.04  Aligned_cols=169  Identities=18%  Similarity=0.154  Sum_probs=137.9

Q ss_pred             cEEEeeeeEecCCCCCCCCCCcccceeeeeEEEeCCcEEEEeccCCcccCCCC--cc--eeecCccCccccccccccccc
Q psy11400         80 LRGRLGITLGLRSGGLGFDSRWGRSFFDYMFGVRGALNLLWPLFGGTVTKPPR--GK--LFYVPQRPYMTLGTLRDQLWP  155 (298)
Q Consensus        80 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~i~~~~~~~~~G~s--GK--L~~~~~~~~~~l~~~~~~l~~  155 (298)
                      .++++||+++|             +|+||||+|++||+++|+        |||  ||  |+++       +    .|+. 
T Consensus         3 il~~~dv~~~~-------------~l~~isl~I~~Gei~~ii--------G~nGaGKSTLl~~-------l----~Gl~-   49 (231)
T d1l7vc_           3 VMQLQDVAEST-------------RLGPLSGEVRAGEILHLV--------GPNGAGKSTLLAR-------M----AGMT-   49 (231)
T ss_dssp             EEEEEEECCTT-------------TSCSEEEEEETTCEEECB--------CCTTSSHHHHHHH-------H----HTSC-
T ss_pred             EEEEECcccCc-------------eecCEEEEEcCCCEEEEE--------CCCCCcHHHHHHH-------H----hCCC-
Confidence            47899997554             799999999999999999        999  99  9998       8    8876 


Q ss_pred             cCCceeeccC-----------CCcEEEEcCcCCC-CCCCHHHHHccCCcchhhhhcCCCHHHHHHHHHHcCCchhhhhcC
Q psy11400        156 LFGGTVTKPP-----------RGKLFYVPQRPYM-TLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREK  223 (298)
Q Consensus       156 ~~~G~i~~~~-----------r~~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~  223 (298)
                      |++|+|....           +...+|++|+... +..++.+++.+...      .....+.+.++++.+++.+.++++ 
T Consensus        50 ~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~-  122 (231)
T d1l7vc_          50 SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH------DKTRTELLNDVAGALALDDKLGRS-  122 (231)
T ss_dssp             CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS------CTTCHHHHHHHHHHTTCTTTTTSB-
T ss_pred             CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccc------hhhHHHHHHHHHHhcCCHhHhCcC-
Confidence            5789985321           2358999998865 45689988876432      223456788899999998766553 


Q ss_pred             CcccccccCCCCChhHHHHHHHHHHHhc-------CCCEEEEeccccCCCHHHHHHHHHHHHh---cCcEEEEEecCcch
Q psy11400        224 GWDTVADWIDVLSGGEKQRVAMARLFYH-------RPQFAILDECTSAVSVDVEGSMYEYCRE---VGITLFTVSHRKSL  293 (298)
Q Consensus       224 g~d~~~~~~~~LSgGqkQRlaiARaL~~-------~P~iliLDEPTs~LD~~~~~~i~~~l~~---~~~TiIiitH~l~~  293 (298)
                              +.+||||||||++|||||++       +|+++||||||+|||+.....+.+++++   .|+|||++||+++.
T Consensus       123 --------~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~  194 (231)
T d1l7vc_         123 --------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNH  194 (231)
T ss_dssp             --------GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHH
T ss_pred             --------hhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                    67999999999999999997       7799999999999999998888877654   59999999999987


Q ss_pred             hhh
Q psy11400        294 WTH  296 (298)
Q Consensus       294 ~~~  296 (298)
                      +..
T Consensus       195 ~~~  197 (231)
T d1l7vc_         195 TLR  197 (231)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.86  E-value=1.3e-10  Score=94.89  Aligned_cols=61  Identities=10%  Similarity=0.005  Sum_probs=51.8

Q ss_pred             CCChhHHHHHHHHHHHhcCCCEEEEeccccCC--CHHHHHHHHHHHHhcCcEEEEEecCcchh
Q psy11400        234 VLSGGEKQRVAMARLFYHRPQFAILDECTSAV--SVDVEGSMYEYCREVGITLFTVSHRKSLW  294 (298)
Q Consensus       234 ~LSgGqkQRlaiARaL~~~P~iliLDEPTs~L--D~~~~~~i~~~l~~~~~TiIiitH~l~~~  294 (298)
                      .+|+|+++|.++++++..+|+++++|||....  +......+.+.+++.+.|+|+++|+.+..
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~  143 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH  143 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHH
Confidence            58999999999999999999999999986554  55667777788877789999999997643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1e-08  Score=93.88  Aligned_cols=64  Identities=30%  Similarity=0.551  Sum_probs=53.3

Q ss_pred             CCCChhHHHHHHHHHHH----hcCCCEEEEeccccCCCHHHHHHHHHHHHhc---CcEEEEEecCcchhhh
Q psy11400        233 DVLSGGEKQRVAMARLF----YHRPQFAILDECTSAVSVDVEGSMYEYCREV---GITLFTVSHRKSLWTH  296 (298)
Q Consensus       233 ~~LSgGqkQRlaiARaL----~~~P~iliLDEPTs~LD~~~~~~i~~~l~~~---~~TiIiitH~l~~~~~  296 (298)
                      ..||||||.++++|-.+    ..++++++||||+++||+.....+.+++++.   +.-+|+|||++.++..
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~  401 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK  401 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh
Confidence            56899999998877544    4677899999999999999999999988652   4569999999987654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=5.9e-06  Score=72.19  Aligned_cols=65  Identities=26%  Similarity=0.347  Sum_probs=55.0

Q ss_pred             CCCCChhHHHHHHHHHH----HhcCCCEEEEeccccCCCHHHHHHHHHHHHh--cCcEEEEEecCcchhhh
Q psy11400        232 IDVLSGGEKQRVAMARL----FYHRPQFAILDECTSAVSVDVEGSMYEYCRE--VGITLFTVSHRKSLWTH  296 (298)
Q Consensus       232 ~~~LSgGqkQRlaiARa----L~~~P~iliLDEPTs~LD~~~~~~i~~~l~~--~~~TiIiitH~l~~~~~  296 (298)
                      ...+|+|||+.+.++..    ...+|.++++|||-++|+|.....+.+.+++  .+.-+|++||++.++..
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~  287 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA  287 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh
Confidence            35799999999877665    3466789999999999999999999999876  36789999999988764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.83  E-value=0.2  Score=41.24  Aligned_cols=57  Identities=19%  Similarity=0.067  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeccccCCCHHHH----HHHHHHHHhcCcEEEEEecCcchhh
Q psy11400        239 EKQRVAMARLFYHRPQFAILDECTSAVSVDVE----GSMYEYCREVGITLFTVSHRKSLWT  295 (298)
Q Consensus       239 qkQRlaiARaL~~~P~iliLDEPTs~LD~~~~----~~i~~~l~~~~~TiIiitH~l~~~~  295 (298)
                      |-+++.-+.--+.+..++++||...|=++..-    ..+.+.+.+.+..++++||..++..
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            33444333334566779999999999998533    3455666666889999999876543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.79  Score=37.60  Aligned_cols=47  Identities=13%  Similarity=-0.004  Sum_probs=32.1

Q ss_pred             HhcCCCEEEEeccccCCCHHHHH----HHHHHH-HhcCcEEEEEecCcchhh
Q psy11400        249 FYHRPQFAILDECTSAVSVDVEG----SMYEYC-REVGITLFTVSHRKSLWT  295 (298)
Q Consensus       249 L~~~P~iliLDEPTs~LD~~~~~----~i~~~l-~~~~~TiIiitH~l~~~~  295 (298)
                      -..+..++++||+..|=++..-.    .+.+.+ .+.+..+|++||...+..
T Consensus       117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            35556799999999999875332    234444 334678899999876544