Psyllid ID: psy11415

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLRHI
Secondary Structure (PSIPRED)
ccccccccccHHHHEcccccccccHHHHHHHHHHHccccccEEEccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEccccccccHHHHHHHHHcccEEEEEcccccccEEEEccccccEccccccccc
Coil and Loop (DISEMBL)
mvkcdprhgkymaccmlyrgdvvpkdvNSAIATIktkrtiqfvdwcptgfkvginyqpptvvpggdlrhi
Flexible Loop (DISEMBL)
mvkcdprhgKYMACCMLYRGDVVPKDVNSAIAtiktkrtiqfvDWCPTGfkvginyqpptvvpggdlrhi
Low Complexity Region (SEG)
MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLRHI
Disordered region (IsUnstruct)
********GKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV*********
Disordered Region (DISOPRED)
MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLRH*
Disordered Region (DISEMBL)
MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLRHI
Disordered Region (DISPRO)
*VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLRHI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q68FR8	450	Tubulin alpha-3 chain OS=	yes	N/A	1.0	0.155	0.942	2e-37
P05214	450	Tubulin alpha-3 chain OS=	yes	N/A	1.0	0.155	0.942	2e-37
Q32KN8	450	Tubulin alpha-3 chain OS=	yes	N/A	1.0	0.155	0.942	2e-37
Q13748	450	Tubulin alpha-3C/D chain	yes	N/A	1.0	0.155	0.942	2e-37
P02552	412	Tubulin alpha-1 chain (Fr	yes	N/A	1.0	0.169	0.928	2e-37
P18288	450	Tubulin alpha chain, test	N/A	N/A	1.0	0.155	0.942	2e-37
Q6PEY2	450	Tubulin alpha-3E chain OS	yes	N/A	1.0	0.155	0.942	2e-37
P06603	450	Tubulin alpha-1 chain OS=	yes	N/A	1.0	0.155	0.942	2e-37
Q6AYZ1	449	Tubulin alpha-1C chain OS	yes	N/A	1.0	0.155	0.928	3e-37
P52273	450	Tubulin alpha chain OS=Bo	N/A	N/A	1.0	0.155	0.942	3e-37

>sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Rattus norvegicus (taxid: 10116)

>sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Mus musculus (taxid: 10090)

>sp|Q32KN8|TBA3_BOVIN Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Bos taurus (taxid: 9913)

>sp|Q13748|TBA3C_HUMAN Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Homo sapiens (taxid: 9606)

>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/70 (92%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 263 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 322

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 323 VVPGGDLAKV 332

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Gallus gallus (taxid: 9031)

>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Oncorhynchus mykiss (taxid: 8022)

>sp|Q6PEY2|TBA3E_HUMAN Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Homo sapiens (taxid: 9606)

>sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Drosophila melanogaster (taxid: 7227)

>sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1

 Score =  153 bits (387), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/70 (92%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLARV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Rattus norvegicus (taxid: 10116)

>sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1

 Score =  153 bits (387), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Bombyx mori (taxid: 7091)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
432094860	791	Tubulin alpha-3 chain [Myotis davidii]	1.0	0.088	0.942	1e-36
357613203	1068	Moesin [Danaus plexippus]	1.0	0.065	0.942	1e-36
344295288	758	PREDICTED: tubulin alpha-3 chain-like [L	1.0	0.092	0.942	1e-36
195157178	1216	GL12416 [Drosophila persimilis] gi|19411	1.0	0.057	0.942	1e-36
405955095	427	Tubulin alpha-1C chain [Crassostrea giga	1.0	0.163	0.942	2e-36
126306763	449	PREDICTED: tubulin alpha-1C chain-like [	1.0	0.155	0.942	2e-36
338727446	506	PREDICTED: tubulin alpha-3 chain-like [E	1.0	0.138	0.942	2e-36
395531101	449	PREDICTED: tubulin alpha-1C chain-like [	1.0	0.155	0.942	2e-36
444515377	1188	Protein LMBR1L [Tupaia chinensis]	1.0	0.058	0.928	3e-36
449271034	453	Tubulin alpha-3 chain, partial [Columba	1.0	0.154	0.942	3e-36

>gi|432094860|gb|ELK26268.1| Tubulin alpha-3 chain [Myotis davidii]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 643 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 702

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 703 VVPGGDLAKV 712

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357613203|gb|EHJ68371.1| Moesin [Danaus plexippus]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 310 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 369

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 370 VVPGGDLAKV 379

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344295288|ref|XP_003419344.1| PREDICTED: tubulin alpha-3 chain-like [Loxodonta africana]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 610 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 669

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 670 VVPGGDLAKV 679

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195157178|ref|XP_002019473.1| GL12416 [Drosophila persimilis] gi|194116064|gb|EDW38107.1| GL12416 [Drosophila persimilis]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1    MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
            MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 1068 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 1127

Query: 61   VVPGGDLRHI 70
            VVPGGDL  +
Sbjct: 1128 VVPGGDLAKV 1137

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405955095|gb|EKC22338.1| Tubulin alpha-1C chain [Crassostrea gigas]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 278 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 337

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 338 VVPGGDLAKV 347

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|126306763|ref|XP_001369340.1| PREDICTED: tubulin alpha-1C chain-like [Monodelphis domestica]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAEV 371

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338727446|ref|XP_001496291.3| PREDICTED: tubulin alpha-3 chain-like [Equus caballus]

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 358 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 417

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 418 VVPGGDLAKV 427

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395531101|ref|XP_003767621.1| PREDICTED: tubulin alpha-1C chain-like [Sarcophilus harrisii]

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444515377|gb|ELV10876.1| Protein LMBR1L [Tupaia chinensis]

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/70 (92%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 200 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 259

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 260 VVPGGDLAKV 269

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449271034|gb|EMC81649.1| Tubulin alpha-3 chain, partial [Columba livia]

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0003884	450	alphaTub84B "alpha-Tubulin at	1.0	0.155	0.942	2.2e-34
UNIPROTKB|F1N9J7	450	LOC100859737 "Uncharacterized	1.0	0.155	0.942	2.2e-34
UNIPROTKB|F2Z4K0	450	TUBA3E "Uncharacterized protei	1.0	0.155	0.942	2.2e-34
UNIPROTKB|F6RP72	449	F6RP72 "Uncharacterized protei	1.0	0.155	0.942	2.2e-34
UNIPROTKB|Q32KN8	450	TUBA3 "Tubulin alpha-3 chain"	1.0	0.155	0.942	2.2e-34
UNIPROTKB|F1PE21	450	TUBA3C "Uncharacterized protei	1.0	0.155	0.942	2.2e-34
UNIPROTKB|J9NXT1	450	LOC608051 "Uncharacterized pro	1.0	0.155	0.942	2.2e-34
UNIPROTKB|Q13748	450	TUBA3C "Tubulin alpha-3C/D cha	1.0	0.155	0.942	2.2e-34
UNIPROTKB|Q6PEY2	450	TUBA3E "Tubulin alpha-3E chain	1.0	0.155	0.942	2.2e-34
UNIPROTKB|F1RK98	450	LOC100510930 "Uncharacterized	1.0	0.155	0.942	2.2e-34

FB|FBgn0003884 alphaTub84B "alpha-Tubulin at 84B" [Drosophila melanogaster (taxid:7227)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0045298 "tubulin complex" evidence=NAS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0005874 "microtubule" evidence=ISS;NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;ISS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA

GO:0009987 "cellular process" evidence=IMP

GO:0005819 "spindle" evidence=IDA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0000235 "astral microtubule" evidence=IDA

UNIPROTKB|F1N9J7 LOC100859737 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F2Z4K0 TUBA3E "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F6RP72 F6RP72 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   301 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 360

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   361 VVPGGDLAKV 370

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q32KN8 TUBA3 "Tubulin alpha-3 chain" [Bos taurus (taxid:9913)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1PE21 TUBA3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|J9NXT1 LOC608051 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q13748 TUBA3C "Tubulin alpha-3C/D chain" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007017 "microtubule-based process" evidence=NAS

GO:0005525 "GTP binding" evidence=NAS

GO:0005874 "microtubule" evidence=NAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|Q6PEY2 TUBA3E "Tubulin alpha-3E chain" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1RK98 LOC100510930 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query:     1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
             MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct:   302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query:    61 VVPGGDLRHI 70
             VVPGGDL  +
Sbjct:   362 VVPGGDLAKV 371

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P68365	TBA1C_CRIGR	No assigned EC number	0.9285	1.0	0.1559	yes	N/A
P36220	TBA_TORMA	No assigned EC number	0.9142	1.0	0.1552	N/A	N/A
P68361	TBA1B_CRIGR	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
P68360	TBA1B_MERUN	No assigned EC number	0.9142	1.0	0.1552	N/A	N/A
P68363	TBA1B_HUMAN	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
Q6PEY2	TBA3E_HUMAN	No assigned EC number	0.9428	1.0	0.1555	yes	N/A
P18258	TBA1_PARLI	No assigned EC number	0.9285	1.0	0.1548	N/A	N/A
P06605	TBA3_DROME	No assigned EC number	0.9285	1.0	0.1555	yes	N/A
P68369	TBA1A_MOUSE	No assigned EC number	0.9285	1.0	0.1552	yes	N/A
Q71U36	TBA1A_HUMAN	No assigned EC number	0.9285	1.0	0.1552	yes	N/A
Q6P9V9	TBA1B_RAT	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
P09645	TBA8_CHICK	No assigned EC number	0.9285	1.0	0.2160	no	N/A
Q2HJ86	TBA1D_BOVIN	No assigned EC number	0.9285	1.0	0.1548	yes	N/A
Q8T6A5	TBA1_APLCA	No assigned EC number	0.9285	1.0	0.1552	N/A	N/A
P02552	TBA1_CHICK	No assigned EC number	0.9285	1.0	0.1699	yes	N/A
P02550	TBA1A_PIG	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
P41383	TBA2_PATVU	No assigned EC number	0.9285	1.0	0.1548	N/A	N/A
P68362	TBA1A_CRIGR	No assigned EC number	0.9285	1.0	0.1552	yes	N/A
P52273	TBA_BOMMO	No assigned EC number	0.9428	1.0	0.1555	N/A	N/A
A5A6J1	TBA1A_PANTR	No assigned EC number	0.9285	1.0	0.1552	yes	N/A
Q6AY56	TBA8_RAT	No assigned EC number	0.9285	1.0	0.1559	no	N/A
Q32KN8	TBA3_BOVIN	No assigned EC number	0.9428	1.0	0.1555	yes	N/A
Q3ZCJ7	TBA1C_BOVIN	No assigned EC number	0.9285	1.0	0.1559	yes	N/A
Q06331	TBA_ENTDO	No assigned EC number	0.9285	1.0	0.1552	N/A	N/A
Q2XVP4	TBA1B_PIG	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
Q6AYZ1	TBA1C_RAT	No assigned EC number	0.9285	1.0	0.1559	yes	N/A
P68373	TBA1C_MOUSE	No assigned EC number	0.9285	1.0	0.1559	yes	N/A
P68370	TBA1A_RAT	No assigned EC number	0.9285	1.0	0.1552	yes	N/A
Q4R538	TBA1B_MACFA	No assigned EC number	0.9142	1.0	0.1552	N/A	N/A
Q68FR8	TBA3_RAT	No assigned EC number	0.9428	1.0	0.1555	yes	N/A
P05214	TBA3_MOUSE	No assigned EC number	0.9428	1.0	0.1555	yes	N/A
P06603	TBA1_DROME	No assigned EC number	0.9428	1.0	0.1555	yes	N/A
Q9NY65	TBA8_HUMAN	No assigned EC number	0.9285	1.0	0.1559	no	N/A
P06604	TBA2_DROME	No assigned EC number	0.9142	1.0	0.1559	yes	N/A
P05213	TBA1B_MOUSE	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
Q9JJZ2	TBA8_MOUSE	No assigned EC number	0.9285	1.0	0.1559	no	N/A
P81947	TBA1B_BOVIN	No assigned EC number	0.9142	1.0	0.1552	yes	N/A
Q13748	TBA3C_HUMAN	No assigned EC number	0.9428	1.0	0.1555	yes	N/A
Q9BQE3	TBA1C_HUMAN	No assigned EC number	0.9285	1.0	0.1559	yes	N/A
P18288	TBAT_ONCMY	No assigned EC number	0.9428	1.0	0.1555	N/A	N/A
P08537	TBA_XENLA	No assigned EC number	0.9142	1.0	0.1559	N/A	N/A
Q2HJB8	TBA8_BOVIN	No assigned EC number	0.9285	1.0	0.1559	no	N/A
P30436	TBA_ONCKE	No assigned EC number	0.9142	1.0	0.1555	N/A	N/A
Q5R1W4	TBA1B_PANTR	No assigned EC number	0.9142	1.0	0.1552	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
PLN00221	450	PLN00221, PLN00221, tubulin alpha chain; Provision	2e-52
cd02186	434	cd02186, alpha_tubulin, The tubulin superfamily in	4e-52
PTZ00335	448	PTZ00335, PTZ00335, tubulin alpha chain; Provision	2e-51
pfam03953	126	pfam03953, Tubulin_C, Tubulin C-terminal domain	8e-39
COG5023	443	COG5023, COG5023, Tubulin [Cytoskeleton]	3e-30
cd00286	328	cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ	1e-18
cd06059	382	cd06059, Tubulin, The tubulin superfamily includes	3e-15
cd02187	425	cd02187, beta_tubulin, The tubulin superfamily inc	3e-12
PTZ00387	465	PTZ00387, PTZ00387, epsilon tubulin; Provisional	8e-12
cd02190	379	cd02190, epsilon_tubulin, The tubulin superfamily	8e-12
PLN00220	447	PLN00220, PLN00220, tubulin beta chain; Provisiona	2e-11
PTZ00010	445	PTZ00010, PTZ00010, tubulin beta chain; Provisiona	7e-10
smart00865	120	smart00865, Tubulin_C, Tubulin/FtsZ family, C-term	8e-08
cd02188	431	cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit	3e-07
PLN00222	454	PLN00222, PLN00222, tubulin gamma chain; Provision	1e-04

>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional

 Score =  167 bits (425), Expect = 2e-52
 Identities = 61/67 (91%), Positives = 65/67 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKRTIQFVDWCPTGFK GINYQPPT
Sbjct: 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT 361

Query: 61  VVPGGDL 67
           VVPGGDL
Sbjct: 362 VVPGGDL 368

Length = 450

>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score =  166 bits (423), Expect = 4e-52
 Identities = 64/67 (95%), Positives = 67/67 (100%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+A+ATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 301 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPT 360

Query: 61  VVPGGDL 67
           VVPGGDL
Sbjct: 361 VVPGGDL 367

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434

>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional

 Score =  165 bits (420), Expect = 2e-51
 Identities = 62/67 (92%), Positives = 65/67 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M KCDPRHGKYMACC++YRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFK GINYQPPT
Sbjct: 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPT 361

Query: 61  VVPGGDL 67
           VVPGGDL
Sbjct: 362 VVPGGDL 368

Length = 448

>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain

 Score =  124 bits (313), Expect = 8e-39
 Identities = 35/67 (52%), Positives = 45/67 (67%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MV CDPRHGKY++C +L RGDV PK+V+ AI  I+ K +  FV+W P   KV I   PP 
Sbjct: 40  MVACDPRHGKYLSCALLIRGDVSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPY 99

Query: 61  VVPGGDL 67
            +PG D+
Sbjct: 100 GLPGSDV 106

This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family). Length = 126

>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton]

 Score =  109 bits (273), Expect = 3e-30
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           MV CDPR G+YMA C+L+RGDV P+DV+ A+  +++KRTIQFV+WCPTGFKV I  +PP
Sbjct: 300 MVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPP 358

Length = 443

>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

 Score = 76.7 bits (189), Expect = 1e-18
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MV CDP HG Y+A  +L RG V P +V   IA +  +     + W P G KVG++  PP 
Sbjct: 258 MVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRT--SHLSWSPPGIKVGVSPTPPA 315

Query: 61  V 61
            
Sbjct: 316 S 316

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts. Length = 328

>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
              CDP  G+Y+A  +++RGDV   ++  AI  +K K  IQ   W P GFKV    +PP
Sbjct: 259 FFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPP 315

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Also included in this group is the mitochondrial Misato/DML1 protein family, involved in mitochondrial fusion and in mitochondrial distribution and morphology. Length = 382

>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M  CDPRHG+Y+    ++RG V  K+V+  +  ++ K +  FV+W P   K  +   PP 
Sbjct: 299 MAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR 358

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425

>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional

 Score = 57.8 bits (140), Expect = 8e-12
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           MV   P  GKY+A  ++ RG     DV   I   + K  +  + W   GFK G+    P
Sbjct: 327 MVAATPEAGKYLATALIVRGPQNVSDVTRNIL--RLKEQLNMIYWNEDGFKTGLCNVSP 383

Length = 465

>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 57.7 bits (140), Expect = 8e-12
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           +++ DP+HG Y+AC +L RG+V   D+   I  +K K  ++FV W   G+K+G+   PP
Sbjct: 256 LIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPP 312

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis. Length = 379

>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP 
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK 359

Length = 447

>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M   DPRHG+Y+    L+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP 
Sbjct: 300 MCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPK 359

Query: 61  VVP 63
            + 
Sbjct: 360 GLK 362

Length = 445

>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain

 Score = 44.8 bits (107), Expect = 8e-08
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 1  MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRT-IQFVDWCP-TGFKVG 53
          M          +        D+  K+VN A+  I+ K     F+ W P    ++G
Sbjct: 50 MGAKGVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEELG 98

This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain. Length = 120

>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 1   MVKCDP-RHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           MV     ++G Y++   + +G+V P  V+ ++  I+ +R   F+ W P   +V ++ + P
Sbjct: 302 MVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSP 361

Query: 60  TVVPG 64
            V   
Sbjct: 362 YVPTA 366

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping. Length = 431

>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 31/57 (54%)

Query: 5   DPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 61
           +    KY++   + +G+V P  V+ ++  I+ ++   F++W P   +V ++ + P V
Sbjct: 313 EASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYV 369

Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PF03953	126	Tubulin_C: Tubulin C-terminal domain; InterPro: IP	99.9
COG5023	443	Tubulin [Cytoskeleton]	99.8
PTZ00335	448	tubulin alpha chain; Provisional	99.57
PLN00221	450	tubulin alpha chain; Provisional	99.55
cd02188	431	gamma_tubulin Gamma-tubulin is a ubiquitous phylog	99.55
PTZ00010	445	tubulin beta chain; Provisional	99.54
cd02186	434	alpha_tubulin The tubulin superfamily includes fiv	99.54
PLN00222	454	tubulin gamma chain; Provisional	99.52
cd02187	425	beta_tubulin The tubulin superfamily includes five	99.5
PLN00220	447	tubulin beta chain; Provisional	99.49
PTZ00387	465	epsilon tubulin; Provisional	99.49
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	99.46
KOG1375|consensus	369		99.24
cd06059	382	Tubulin The tubulin superfamily includes five dist	99.16
KOG1376|consensus	407		98.86
cd02189	446	delta_tubulin The tubulin superfamily includes fiv	98.81
cd00286	328	Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin	98.77
KOG1374|consensus	448		98.68
smart00865	120	Tubulin_C Tubulin/FtsZ family, C-terminal domain.	96.5

>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins

Probab=99.90  E-value=4.3e-24  Score=122.00  Aligned_cols=65  Identities=68%  Similarity=1.210  Sum_probs=58.7

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG   65 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~   65 (70)
                      |+++|+++|+|||++++|||+++++||++++.+++++.+++|++|+|+|||+++|++||.+.+.+
T Consensus        40 m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~Fv~W~p~~~kv~~~~~~p~~~~~s  104 (126)
T PF03953_consen   40 MVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQFVDWIPTGFKVGICKVPPYGQPNS  104 (126)
T ss_dssp             SSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTSB-SSSTTCEEEEEESS-STSTTTS
T ss_pred             ccccccccchhhhhhhccccccccchhhhHHHhhhhccccceeeecCchhhcccccCCCcccCCC
Confidence            67899999999999999999999999999999999999999999999999999999999988877

These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....

>COG5023 Tubulin [Cytoskeleton]

Probab=99.80  E-value=4.4e-20  Score=120.05  Aligned_cols=60  Identities=63%  Similarity=1.313  Sum_probs=58.3

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT   60 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~   60 (70)
                      |++|||+.|+|++++++|||+++++||.+++.++|+|+.++|++|+|++||+++|+.||.
T Consensus       300 mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~  359 (443)
T COG5023         300 MVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS  359 (443)
T ss_pred             eeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc
Confidence            688999999999999999999999999999999999999999999999999999999993

>PTZ00335 tubulin alpha chain; Provisional

Probab=99.57  E-value=4.5e-15  Score=99.17  Aligned_cols=64  Identities=92%  Similarity=1.657  Sum_probs=58.4

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG   64 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~   64 (70)
                      |++++|+.|+||++++++||+++..|+.+++.++++++.+.|++|+|+++++++|+++|...+.
T Consensus       302 ~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~  365 (448)
T PTZ00335        302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG  365 (448)
T ss_pred             eEecCCCccchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCC
Confidence            3467888999999999999999999999999999999999999999999999999999875543

>PLN00221 tubulin alpha chain; Provisional

Probab=99.55  E-value=6.3e-15  Score=98.54  Aligned_cols=65  Identities=91%  Similarity=1.661  Sum_probs=58.8

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG   65 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~   65 (70)
                      |++++|+.|+||++++++||+++.+|+.+++.+++.++.+.|++|+|+++++++|+++|...+.+
T Consensus       302 l~~~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~  366 (450)
T PLN00221        302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG  366 (450)
T ss_pred             eeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCc
Confidence            45678889999999999999999999999999999899999999999999999999998755543

>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

Probab=99.55  E-value=9.9e-15  Score=97.18  Aligned_cols=61  Identities=26%  Similarity=0.620  Sum_probs=56.5

Q ss_pred             CccccC-CCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          1 MVKCDP-RHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         1 ~~~~~~-~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      |+.+++ +.|+|||+++++||+++++|+.+++.+++++..++|++|+|++|++++|+++|..
T Consensus       302 m~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~  363 (431)
T cd02188         302 MVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYV  363 (431)
T ss_pred             eeecCCCccchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCcc
Confidence            456788 8899999999999999999999999999998889999999999999999998864

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.

>PTZ00010 tubulin beta chain; Provisional

Probab=99.54  E-value=7.3e-15  Score=98.11  Aligned_cols=66  Identities=30%  Similarity=0.660  Sum_probs=59.3

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      |+++||+.|+|||+++++||+++.+|+.+++.++++++.+.|++|+|++|++++|+++|...+.+.
T Consensus       300 ~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~  365 (445)
T PTZ00010        300 MCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSV  365 (445)
T ss_pred             EeecCCCcchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceE
Confidence            346788899999999999999999999999999999999999999999999999999987655443

>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.54  E-value=1.1e-14  Score=97.00  Aligned_cols=64  Identities=95%  Similarity=1.694  Sum_probs=58.5

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG   64 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~   64 (70)
                      |+.++++.|+||++++++||+++.+|+.+++.++++++.+.|++|+|+++++++|++||...+.
T Consensus       301 m~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~  364 (434)
T cd02186         301 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG  364 (434)
T ss_pred             eeecCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCC
Confidence            4567889999999999999999999999999999989999999999999999999999875554

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino

>PLN00222 tubulin gamma chain; Provisional

Probab=99.52  E-value=1.4e-14  Score=97.01  Aligned_cols=60  Identities=25%  Similarity=0.609  Sum_probs=55.1

Q ss_pred             ccccCCC-----CchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          2 VKCDPRH-----GKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         2 ~~~~~~~-----g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      +.++|+.     |+|||+++++||+++++|+.+++.++++++.+.|++|+|+++++++|+++|..
T Consensus       305 ~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~  369 (454)
T PLN00222        305 VSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYV  369 (454)
T ss_pred             eecCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCC
Confidence            4567776     99999999999999999999999999998889999999999999999999864

>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.50  E-value=2.5e-14  Score=95.08  Aligned_cols=65  Identities=31%  Similarity=0.710  Sum_probs=58.5

Q ss_pred             ccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         2 ~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      +.++|+.|+||++++++||+++++|+.+++.++++++.+.|++|+|+++++++|+++|...+.+.
T Consensus       300 ~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~  364 (425)
T cd02187         300 AACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSA  364 (425)
T ss_pred             eccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeE
Confidence            45778899999999999999999999999999999999999999999999999999987555443

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-

>PLN00220 tubulin beta chain; Provisional

Probab=99.49  E-value=3.9e-14  Score=94.65  Aligned_cols=65  Identities=28%  Similarity=0.661  Sum_probs=58.6

Q ss_pred             ccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         2 ~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      +++++..|+||++++++||+++..|+.+++.+++.++.+.|++|+|++|++++|+++|...+.+.
T Consensus       301 ~~~~~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~  365 (447)
T PLN00220        301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAS  365 (447)
T ss_pred             cccCCCCchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceee
Confidence            45678889999999999999999999999999988899999999999999999999987655443

>PTZ00387 epsilon tubulin; Provisional

Probab=99.49  E-value=3.1e-14  Score=95.60  Aligned_cols=64  Identities=31%  Similarity=0.554  Sum_probs=57.1

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      |+.++|..|+|||+++++||+++..|+.+.+.+++++  +.|++|+|+++++++|+++|...+.+.
T Consensus       327 m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~--~~f~~W~p~~~~~~~~~~~~~~~~~s~  390 (465)
T PTZ00387        327 MVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQ--LNMIYWNEDGFKTGLCNVSPLGQPYSL  390 (465)
T ss_pred             eeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhcc--ccccccCCCceEEEeeccCCCCCceeE
Confidence            4567889999999999999999999999999999654  999999999999999999997766554

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.46  E-value=7.1e-14  Score=91.84  Aligned_cols=63  Identities=37%  Similarity=0.812  Sum_probs=55.6

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG   65 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~   65 (70)
                      |+.++++.|+||++++++||++++.|+.+++.+++++  +.|++|+|+++++++|+++|...+.+
T Consensus       256 m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s  318 (379)
T cd02190         256 LIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYS  318 (379)
T ss_pred             eeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCccee
Confidence            4457888999999999999999999999999999776  78999999999999999998655443

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>KOG1375|consensus

Probab=99.24  E-value=4.3e-12  Score=82.58  Aligned_cols=56  Identities=23%  Similarity=0.539  Sum_probs=52.8

Q ss_pred             chhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCCC
Q psy11415         10 KYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL   67 (70)
Q Consensus        10 ~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~l   67 (70)
                      .||+++.++||  +.+|+++++..+++|+..+|++|+|+++|+++|.+||.+.+++.+
T Consensus       235 dyLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glkms~t  290 (369)
T KOG1375|consen  235 DYLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLKMSST  290 (369)
T ss_pred             hhhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcccccccc
Confidence            39999999999  999999999999999999999999999999999999998888773

>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.16  E-value=5.6e-11  Score=78.12  Aligned_cols=62  Identities=39%  Similarity=0.831  Sum_probs=53.4

Q ss_pred             ccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCc-cccCC
Q psy11415          2 VKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT-VVPGG   65 (70)
Q Consensus         2 ~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~-~~~~~   65 (70)
                      +.++++.|+||++++++||+....++.+.+.+++.+..+.  +|+|+++++++|+++|. ..+.+
T Consensus       260 ~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s  322 (382)
T cd06059         260 FSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKS  322 (382)
T ss_pred             eecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCccee
Confidence            4567889999999999999999999999999998776555  89999999999999986 44433

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi

>KOG1376|consensus

Probab=98.86  E-value=1.2e-09  Score=71.64  Aligned_cols=44  Identities=95%  Similarity=1.566  Sum_probs=42.4

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVD   44 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~   44 (70)
                      |++|||+.|+|++++++|||++.++|+..++..++.++.++|++
T Consensus       294 mvkcDP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd  337 (407)
T KOG1376|consen  294 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD  337 (407)
T ss_pred             ccccCCccchHHHHHHhccCCcCcccchHHHHhhhhccccccce
Confidence            68899999999999999999999999999999999999999987

>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=98.81  E-value=4e-09  Score=70.78  Aligned_cols=53  Identities=17%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             ccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          4 CDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         4 ~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      +++..++||++++++||+...+++.+.+     ++.+.|++|+|+++++++|+.+|..
T Consensus       328 ~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~  380 (446)
T cd02189         328 KSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSF  380 (446)
T ss_pred             cCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCc
Confidence            5678899999999999998888887543     3569999999999999999998863

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.

>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

Probab=98.77  E-value=1.4e-08  Score=65.60  Aligned_cols=56  Identities=41%  Similarity=0.879  Sum_probs=49.6

Q ss_pred             cccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCc
Q psy11415          3 KCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT   60 (70)
Q Consensus         3 ~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~   60 (70)
                      .++++.++|+++++++||+.+.+++.+.+..++++..+.  +|+|+++++++|..||.
T Consensus       260 ~~~~~~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~  315 (328)
T cd00286         260 VCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPA  315 (328)
T ss_pred             ccCCCccchHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCC
Confidence            356778999999999999999999999999998875555  89999999999998875

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.

>KOG1374|consensus

Probab=98.68  E-value=1.3e-08  Score=67.22  Aligned_cols=58  Identities=21%  Similarity=0.511  Sum_probs=53.6

Q ss_pred             CchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          9 GKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         9 g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      .+|+++.++..|.+++.+|.+.+.++++++..+|++|.|.++++++.+.+|+..+..+
T Consensus       316 ~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~  373 (448)
T KOG1374|consen  316 PCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHR  373 (448)
T ss_pred             cchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccc
Confidence            3899999999999999999999999999999999999999999999999998776543

>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain

Probab=96.50  E-value=0.0015  Score=35.90  Aligned_cols=38  Identities=26%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             hhhhhhhhcccCChHHHHHHHHHhhhhcc-ccccccCC-cceeE
Q psy11415         11 YMACCMLYRGDVVPKDVNSAIATIKTKRT-IQFVDWCP-TGFKV   52 (70)
Q Consensus        11 ~ls~~~~~rG~~~~~~i~~~i~~~~~~~~-~~f~~W~p-~~~kv   52 (70)
                      ||++..    +++.+|+.+.+.+++++.. ..|+.|+| .++++
T Consensus        58 ~l~~~~----~~~~~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~   97 (120)
T smart00865       58 NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEEL   97 (120)
T ss_pred             EEEcCC----CCCHHHHHHHHHHHHHhcCCCceEEEccccCCcC
Confidence            555543    7899999999999988766 88999999 55554

This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
3du7_A	449	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		3e-38
3hkb_A	451	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		4e-38
1z2b_A	448	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		5e-38
4i4t_A	450	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		9e-38
4drx_A	437	Gtp-Tubulin In Complex With A Darpin Length = 437		9e-38
3ryc_A	451	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		9e-38
1ffx_A	451	Tubulin:stathmin-Like Domain Complex Length = 451		1e-37
2xrp_B	452	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		1e-37
1jff_A	451	Refined Structure Of Alpha-Beta Tubulin From Zinc-I		1e-37
1sa0_A	451	Tubulin-Colchicine: Stathmin-Like Domain Complex Le		1e-37
1tub_A	440	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		1e-37
4ffb_A	447	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		1e-25
3ryc_B	445	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		9e-09
4i4t_B	445	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		1e-08
4drx_B	431	Gtp-Tubulin In Complex With A Darpin Length = 431		1e-08
4f61_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		1e-08
1z2b_B	445	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		2e-08
1tub_B	427	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		2e-08
1ffx_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		2e-08
2xrp_A	445	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		2e-08
3du7_B	445	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		2e-08
4ffb_B	463	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		2e-05
2bto_A	473	Structure Of Btuba From Prosthecobacter Dejongeii L		9e-05

>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449

Iteration: 1
 Score =  152 bits (385), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/70 (92%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score =  152 bits (384), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/70 (92%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448

Iteration: 1
 Score =  152 bits (383), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450

Iteration: 1
 Score =  151 bits (381), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437

Iteration: 1
 Score =  151 bits (381), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score =  151 bits (381), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 361
Query: 61  VVPGGDLRHI 70
           VVPGGDL  +
Sbjct: 362 VVPGGDLAKV 371

>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPR GKYMA C+LYRGDVV +DV  A+  +K K+T+Q VDWCPTGFK+GI Y+PPT
Sbjct: 303 MVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPT 362
Query: 61  VVPGGDL 67
             P   L
Sbjct: 363 ATPNSQL 369

>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 59
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP
Sbjct: 300 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358

>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGI 54
           M   DPR+G+Y+     +RG V  K+V   +  +++K +  FV+W P   +  +
Sbjct: 300 MAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV 353

>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 4   CDPRHGKYMACCMLYRGDVVPKDV-NSAIATIKTKRTIQFVDWCPTGFKVGINYQP 58
           C P  G++++  +LYRG +  K + ++A+A ++ K  + +  W PT FK+G   QP
Sbjct: 309 CSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVEQP 362

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	1e-41
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	9e-36
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	2e-35
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	1e-32
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	1e-32

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451

 Score =  139 bits (351), Expect = 1e-41
 Identities = 64/67 (95%), Positives = 67/67 (100%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPT 361

Query: 61  VVPGGDL 67
           VVPGGDL
Sbjct: 362 VVPGGDL 368

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475

 Score =  124 bits (312), Expect = 9e-36
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 1   MVKCDPRHGK---YMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQ 57
           MV           Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +V ++ +
Sbjct: 304 MVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRK 363

Query: 58  PPTVVPGGDL 67
            P +     +
Sbjct: 364 SPYLPSAHRV 373

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445

 Score =  122 bits (308), Expect = 2e-35
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M  CDPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +   PP 
Sbjct: 300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR 359

Query: 61  VVP 63
            + 
Sbjct: 360 GLK 362

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473

 Score =  115 bits (290), Expect = 1e-32
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
              C P  G++++  +LYRG +  K +  A A    +  +    W PT FK+G   QP  
Sbjct: 306 FAACSPMEGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGI 364

Query: 61  VVP 63
              
Sbjct: 365 SHR 367

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426

 Score =  115 bits (289), Expect = 1e-32
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPT--GFKVGINYQP 58
               D + G Y+A   L+RGDV  KDV+  +ATI  ++++ +  + P   G K+G     
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETA 357

Query: 59  PTVVPGGDL 67
           P       L
Sbjct: 358 PEGFASSGL 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	99.86
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	99.8
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	99.76
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	99.66
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	99.55
1w5f_A	353	Cell division protein FTSZ; complete proteome, GTP	97.5
2vap_A	364	FTSZ, cell division protein FTSZ homolog 1; polyme	97.49
1ofu_A	320	FTSZ, cell division protein FTSZ; bacterial cell d	97.43
2vaw_A	394	FTSZ, cell division protein FTSZ; bacterial cell d	97.42
2vxy_A	382	FTSZ, cell division protein FTSZ; GTP-binding, nuc	97.17
1rq2_A	382	Cell division protein FTSZ; cell cycle, tubulin, G	97.13
2r75_1	338	Cell division protein FTSZ; GTPase, tubulin-like,	96.86

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...

Probab=99.86  E-value=1.9e-22  Score=133.32  Aligned_cols=69  Identities=93%  Similarity=1.644  Sum_probs=65.4

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCCCcC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLRH   69 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~l~~   69 (70)
                      |++|||+.|+|||++++|||+++++||++++.++|.|+.++|++|+|+|||+++|++||...|.++|+.
T Consensus       302 m~~~dp~~gky~a~~~~~RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~  370 (451)
T 3ryc_A          302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAK  370 (451)
T ss_dssp             SSCCCGGGSCEEEEEEEEEESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCC
T ss_pred             eEecCCCCCchheehhhcccCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccc
Confidence            678999999999999999999999999999999999999999999999999999999999998877653

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...

Probab=99.80  E-value=1.3e-20  Score=124.41  Aligned_cols=65  Identities=32%  Similarity=0.727  Sum_probs=61.1

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG   65 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~   65 (70)
                      |++|||+.|+|||++++|||+++++||.+++.+++.|+.++|++|+|++||+++|++||...+.+
T Consensus       300 m~~~dp~~gky~a~~~~~RG~v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp~~~~~s  364 (445)
T 3ryc_B          300 MAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS  364 (445)
T ss_dssp             SSSCCGGGSCEEEEEEEEEESCCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCCTTCSEE
T ss_pred             eeecCCCCCcceeeeeeeecCCChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCCccccee
Confidence            67899999999999999999999999999999999999999999999999999999999866544

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*

Probab=99.76  E-value=6e-19  Score=117.33  Aligned_cols=63  Identities=22%  Similarity=0.521  Sum_probs=58.1

Q ss_pred             CccccCC---CCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcccc
Q psy11415          1 MVKCDPR---HGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP   63 (70)
Q Consensus         1 ~~~~~~~---~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~   63 (70)
                      |++|||+   .|+|||++++|||+++++||.+++.++++|+.++|++|+|+++|+++|++||...+
T Consensus       304 m~~~dp~~~~~gkyla~~~~~RG~v~~~dv~~~i~~ik~k~~~~fv~W~p~~~k~~i~~~~p~~~~  369 (475)
T 3cb2_A          304 MVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS  369 (475)
T ss_dssp             SSCCCCC--CCCCEEEEEEEEESSCCHHHHHHHHHHHHHTTCSCBCTTSCCCEEEEEECCCCC---
T ss_pred             eEecCcccccccchhhhHHhhcCCCCHHHHHHHHHHhhcccCCccceecCCCceeeeeccCCccCC
Confidence            6789999   99999999999999999999999999999999999999999999999999998654

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}

Probab=99.66  E-value=2e-17  Score=108.81  Aligned_cols=64  Identities=31%  Similarity=0.616  Sum_probs=55.4

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCC--cceeEEEeccCCccccCCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCP--TGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p--~~~kv~~~~~~p~~~~~~~   66 (70)
                      |++|||+.|+|||+++++||+++++||++++.++  |+.++|++|+|  +++|+++|++||...+.+.
T Consensus       300 m~~~dp~~g~yla~~~i~rG~v~~~~v~~~~~~i--k~~~~fv~W~p~~~~~k~~i~~~~p~~~~~s~  365 (426)
T 2btq_B          300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETAPEGFASSG  365 (426)
T ss_dssp             SSCCCTTTCCEEEEEEEEECC----CTTTTHHHH--HTTSCBCTTSCSSCSEEEEEESCCCTTCSSBC
T ss_pred             eEecCCCCchHHHHHHHHcCCCCHHHHHHHHHHH--hcCCCCcccCCCCCceeeeeeccCCCCCccee
Confidence            6789999999999999999999999999999998  77899999999  9999999999998777655

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*

Probab=99.55  E-value=9.3e-16  Score=102.04  Aligned_cols=62  Identities=31%  Similarity=0.693  Sum_probs=53.6

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHH-HHHHHHhhhhccccccccCCcceeEEEeccCCccccC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDV-NSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG   64 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i-~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~   64 (70)
                      |++|||+.|+||++++++||+++++|| ++++.++++++.++|  |+|+++|+++|++||.+.+.
T Consensus       306 m~~~dp~~gkyla~~~i~RG~v~~~dv~~~~i~~ik~k~~~~F--W~p~~~kv~i~~~pp~g~~~  368 (473)
T 2bto_A          306 FAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVEQPGISHRK  368 (473)
T ss_dssp             SSSSCGGGSCEEEEEEEEEEC----CCHHHHHHHHHTTSCBCS--SSCCCEEEEEESSCCSSCSE
T ss_pred             eeecCCCCchHHHHHHhhcCCCChHHhhHHHHHHHHhhcccce--ecCCcceecccccCCcCcce
Confidence            578999999999999999999999999 999999999999999  99999999999999986443

>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1

Probab=97.50  E-value=6.7e-05  Score=48.54  Aligned_cols=55  Identities=9%  Similarity=0.190  Sum_probs=46.0

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      |+.|+++.++|+.++++++|+++.+|+++++..++++...      |.+++.|.|..|+..
T Consensus       261 ll~~d~~~ak~~l~~i~~~~dl~~~ev~~a~~~I~~~~~~------~~~i~~G~~~d~~~~  315 (353)
T 1w5f_A          261 LIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSE------DADVKFGLIFDDEVP  315 (353)
T ss_dssp             TCCSCGGGCSEEEEEEEECTTCCHHHHHHHHHHHHTTSCT------TSEEEEEEEECTTSC
T ss_pred             CcCCChhhcceeEEEEEeCCCCCHHHHHHHHHHHHHhhCC------CCcEEEEEEeCCCCC
Confidence            3458899999999999999999999999999999876332      678999999887653

>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*

Probab=97.49  E-value=8.8e-05  Score=48.20  Aligned_cols=54  Identities=11%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCC-cceeEEEeccCCcc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCP-TGFKVGINYQPPTV   61 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p-~~~kv~~~~~~p~~   61 (70)
                      |+.||++.++|+.++++++|+++.+|+++++..++++..       | .+++.|.|..||..
T Consensus       274 ll~~d~~~ak~~l~~i~~~~dl~~~ev~~a~~~I~~~~~-------~~a~ii~G~~~~~~~~  328 (364)
T 2vap_A          274 LLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLD-------PNATIIWGATIDENLE  328 (364)
T ss_dssp             TCCSCGGGCCEEEEEEEECTTCCHHHHHHHHHHHHHHSC-------TTCEEEEEEEECTTCS
T ss_pred             CcCcChhhcceEEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CCCCEEEEEEecCCCC
Confidence            456889999999999999999999999999999987633       4 67899999887754

>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=97.43  E-value=9.1e-05  Score=47.29  Aligned_cols=52  Identities=10%  Similarity=0.010  Sum_probs=44.9

Q ss_pred             ccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          4 CDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         4 ~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      ||++.++|+.++++++|+++.+|+++++..++++...      +.+++.|.|..||..
T Consensus       253 ~d~~~ak~~l~~i~~~~d~~~~ev~~a~~~i~~~~~~------~~~ii~G~~~~~~~~  304 (320)
T 1ofu_A          253 VNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASE------HATVKVGTVIDADMR  304 (320)
T ss_dssp             CCGGGCSEEEEEEEECTTCCHHHHHHHHHHHHHHSCT------TSEEEEEEEECTTCC
T ss_pred             CCccccceEEEEEEeCCCCCHHHHHHHHHHHHHhcCC------CCcEEEEEEcCCCCC
Confidence            8899999999999999999999999999999876432      578999999888753

>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=97.42  E-value=0.00016  Score=47.44  Aligned_cols=53  Identities=9%  Similarity=0.013  Sum_probs=44.9

Q ss_pred             cccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          3 KCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         3 ~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      .||++.++|+.++++++|+++.+|+++++..++++...      +.+|+.|.|..||..
T Consensus       252 ~~d~~~ak~~lv~i~~~~dl~~~ev~~a~~~I~~~~~~------~a~i~~G~~~d~~~~  304 (394)
T 2vaw_A          252 DVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASE------HATVKVGTVIDADMR  304 (394)
T ss_dssp             TCCTTTCSEEEEEEEECTTCCHHHHHHHHHHHHHHSCT------TSEEEEEEEECSSCC
T ss_pred             CCCccccceeEEEEEeCCCCCHHHHHHHHHHHHHhcCC------CCCEEEEeecCCCCC
Confidence            47899999999999999999999999999999876432      577899999887754

>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*

Probab=97.17  E-value=0.00031  Score=45.92  Aligned_cols=55  Identities=5%  Similarity=-0.013  Sum_probs=43.7

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      |+.||++.++|+.+.+..+++++.+|+++++..++++..      .+.+|+.|.|..++..
T Consensus       249 ll~~d~~~ak~~l~~i~gg~dl~~~ev~~a~~~I~~~~~------~~a~ii~G~~~d~~~~  303 (382)
T 2vxy_A          249 LLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASD------QDVNMIFGSVINENLK  303 (382)
T ss_dssp             TSCSCGGGCSEEEEEEEECTTCCHHHHHHHHHHHHHHSC------TTCEEEEEEEECTTCS
T ss_pred             CcCCChhhcceeEEEEEeCCCCCHHHHHHHHHHHHHhcC------CCCCEEEEeecCCCCC
Confidence            456889999999776655568999999999999987643      3677899998887653

>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*

Probab=97.13  E-value=0.00022  Score=46.59  Aligned_cols=55  Identities=7%  Similarity=0.033  Sum_probs=44.1

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCcc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV   61 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~   61 (70)
                      |+.||++.++|+.+.+..+++++.+|+++++..++++..      .+.+|++|+|..||..
T Consensus       249 ll~~d~~~ak~~l~~i~gg~dl~~~ev~~a~~~I~~~~~------~~a~ii~G~~~d~~~~  303 (382)
T 1rq2_A          249 LLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAH------PDANIIFGTVIDDSLG  303 (382)
T ss_dssp             GGTTCGGGCSEEEEEEEECTTCCHHHHHHHHHHHHHHSC------TTCEEEEEEEECGGGT
T ss_pred             CcCCChhchheEEEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCCEEEEEEeCCCCC
Confidence            456889999999876655568999999999999987633      4788999999887653

>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*

Probab=96.86  E-value=0.00079  Score=43.26  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=37.0

Q ss_pred             hhhhhcc--cCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccc
Q psy11415         14 CCMLYRG--DVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVV   62 (70)
Q Consensus        14 ~~~~~rG--~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~   62 (70)
                      +++++||  +++.+|+++++..++++.     + .|.+|++|+|..||...
T Consensus       257 ~l~~i~G~~dl~~~ev~~a~~~I~~~~-----~-~~~~i~~G~~~~~~~~~  301 (338)
T 2r75_1          257 LLVTIWTSEDIPYDIVDEVMERIHSKV-----H-PEAEIIFGAVLEPQEQD  301 (338)
T ss_dssp             EEEEEEECTTSCTTHHHHHHHHHHHHS-----C-TTCEEEEEEEECTTCCS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhc-----C-CCCcEEEEEEeCCCCCC
Confidence            6678999  899999999999998763     3 78999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1tuba2	195	d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S	6e-31
d1tubb2	184	d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su	7e-23
d2btoa2	180	d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth	1e-16

>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  104 bits (261), Expect = 6e-31
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 57  MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 116

Query: 61  VVPGGDLRH 69
           VVPGGDL  
Sbjct: 117 VVPGGDLAK 125

>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 83.5 bits (206), Expect = 7e-23
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP 
Sbjct: 57  MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR 116

Query: 61  VVP 63
            + 
Sbjct: 117 GLK 119

>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

 Score = 67.3 bits (164), Expect = 1e-16
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
              C P  G++++  +LYRG +  K +  A A    +  +    W PT FK+G   QP  
Sbjct: 54  FAACSPMEGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGI 112

Query: 61  VVP 63
              
Sbjct: 113 SHR 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1tuba2	195	Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98	99.79
d1tubb2	184	Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982	99.75
d2btoa2	180	Tubulin alpha-subunit {Prosthecobacter dejongeii [	99.61

>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=3.2e-20  Score=110.20  Aligned_cols=68  Identities=94%  Similarity=1.665  Sum_probs=62.8

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCCCc
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLR   68 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~l~   68 (70)
                      |++++++.|+||++++++||+++++||.+++.+++.++.++|++|+|+++|+++|++||...+.++++
T Consensus        57 ~~~~~~~~~~yls~~~~~RG~~~~~ei~~~i~~ik~~~~~~fv~W~~~~~kv~~~~~~p~~~~~~~l~  124 (195)
T d1tuba2          57 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLA  124 (195)
T ss_dssp             SSCCCTTSSCEEEEEEEEESSCCHHHHHHHHHHHTTSSTTCCCSSCSSCCEEEEESSCCCCCTGGGCC
T ss_pred             hcccCCCccHHHHHHHHHhCCCCcchHHHHHHHHHHhCCcchhhhhccceeeeecCCCCccCCCcchh
Confidence            56789999999999999999999999999999999999999999999999999999999877765543

>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.75  E-value=4.2e-19  Score=104.53  Aligned_cols=66  Identities=30%  Similarity=0.704  Sum_probs=62.3

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHHHHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      |++++++.|+||++++++||++.+.|+.+++.++++|+.++|++|+|+++++++|++||...+.++
T Consensus        57 ~~~~~~~~~~~ls~~~~~rg~i~~~ei~~~~~~~~~~~~~~f~~W~p~~~kv~~~~~~~~~~~~s~  122 (184)
T d1tubb2          57 MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSA  122 (184)
T ss_dssp             SSSSCTTSSCEEEEEEECCSSCCTTHHHHHHHHHHTSCGGGBCSSCSSCCEEECCSCCCTTTSSCC
T ss_pred             eeccCCCccHHHHHHHHHcCCCCcchHHHHHHHHHhhCcccccccCCCceeEeeccCcccCcccee
Confidence            567899999999999999999999999999999999999999999999999999999998877776

>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

Probab=99.61  E-value=3.8e-17  Score=95.71  Aligned_cols=64  Identities=28%  Similarity=0.608  Sum_probs=50.8

Q ss_pred             CccccCCCCchhhhhhhhcccCChHHHH-HHHHHhhhhccccccccCCcceeEEEeccCCccccCCC
Q psy11415          1 MVKCDPRHGKYMACCMLYRGDVVPKDVN-SAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD   66 (70)
Q Consensus         1 ~~~~~~~~g~~ls~~~~~rG~~~~~~i~-~~i~~~~~~~~~~f~~W~p~~~kv~~~~~~p~~~~~~~   66 (70)
                      |++++++.|+||++++++||++...++. +.+.++++  .++|++|+|+++++++|++||...+.+.
T Consensus        54 ~~~~~~~~g~yls~~~~~RG~~~~~~~~~~~~~~~k~--~~~f~~W~p~~~kv~~~~~pp~~~~~s~  118 (180)
T d2btoa2          54 FAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMRE--KLPLTYWIPTAFKIGYVEQPGISHRKSM  118 (180)
T ss_dssp             SSSSCGGGSCEEEEEEEEEEC----CCHHHHHHHHHT--TSCBCSSSCCCEEEEEESSCCSSCSEEE
T ss_pred             hcCcCCCCchhHHHHHHHhCCCCCccHHHHHHHHHHh--cccccccCCcceeeeecccCccccceee
Confidence            5678999999999999999999998875 45666644  4899999999999999999998766654